chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	5666616	5676744	3	gain	-	-1	germline	1	0.000543721702451176	0.000694576519053025
1	16604856	16635240	6	gain	-	-1	germline	1	0.000532148378428667	0.000671043930731585
1	16721328	16723860	4	gain	-	-1	germline	1	0.0832744330372551	0.270054112732607
1	39716952	39846084	3	gain	-	-1	germline	1	1.19737161698771e-26	0
1	72288600	72346836	1	loss	A	-1	germline	1	1.05661755818202e-16	0
1	125080800	125083332	7	gain	-	-1	germline	1	0.0832707141670757	0.270047653908412
1	125083332	125161824	3	gain	-	-1	germline	1	0.00143076912076748	0.000742450443283471
1	125161824	125166888	5	gain	-	-1	germline	1	0.0143087143265174	0.0366363538331941
1	146022972	146028036	2	neutral	AA	100	somatic	0	0.025109606731367	0.0527560153179413
1	151259148	151476900	2	neutral	AA	37.1132	somatic	0	3.83479031365615e-12	1.01189112644562e-09
1	159650196	159670452	2	neutral	AA	3.43852	somatic	0	0.786606254942686	0.870230618007995
1	160369284	160392072	2	neutral	AA	45.7614	somatic	0	0.457881796144163	0.709035417627356
1	160964304	160997220	2	neutral	AA	100	germline	1	0.000232917108196142	0.00116695547400958
1	169912392	169922520	2	neutral	AA	100	somatic	0	0.0675758064895442	0.0887396738534156
1	170345364	170433984	2	neutral	AA	100	somatic	0	0.0368108990190644	0.12367842465403
1	176991864	177001992	2	neutral	AA	36.3851	germline	1	0.0938172587169321	0.287590860108608
1	192753564	192791544	2	neutral	AA	100	somatic	0	0.0146076775530205	0.0158620612050895
1	194080332	194115780	2	neutral	AA	18.1959	somatic	0	0.926755910786803	0.907441628628348
1	195827412	195837540	2	neutral	AA	54.5787	somatic	0	0.290092751987743	0.710155209612574
1	196999728	197045304	2	neutral	AA	40.6799	somatic	0	0.103546219546482	0.340577855412821
1	201111696	201119292	2	neutral	AA	36.3789	somatic	0	0.866779050428921	0.918677245740462
1	203858916	203866512	2	neutral	AA	100	germline	1	0.56925788165922	0.920952307123075
1	224307348	224337732	2	neutral	AA	100	somatic	0	0.300557187410441	0.333388210079936
1	233151624	233171880	2	neutral	AA	100	somatic	0	0.863209312647938	0.952108790735121
1	234777168	234782232	7	gain	AAAAABB	3.96387	germline	1	0.0143078341385027	0.0366339976942354
1	236096340	236098872	4	gain	AABB	100	germline	1	0.0832756726905454	0.270056265699063
1	237934572	238000404	2	neutral	AA	54.6927	somatic	0	0.00772489245944328	0.000963069550353857
1	246783912	246786444	4	gain	AAAB	19.2569	somatic	0	0.0832769123587844	0.270058418678049
1	248586696	248632272	1	loss	A	-1	germline	1	2.16276531849254e-13	5.55111512312578e-16
1	248667720	248915856	3	gain	AAB	0.818044	somatic	0	2.4583098153962e-53	0
1	248915856	248925984	3	gain	-	-1	somatic	0	0.0027364166836011	0.00505750808205663
1	248925984	248956422	3	gain	AAB	-1	somatic	0	NA	NA
2	0	162048	3	gain	-	-1	somatic	0	3.32255451870012e-33	0
2	3180192	3182724	7	gain	-	-1	germline	1	0.0832700943684589	0.270046577448676
2	6375576	6388236	1	loss	A	-1	germline	1	0.000108508263592146	9.20017828048847e-05
2	35751840	35767032	1	loss	A	-1	germline	1	2.22673507571437e-05	1.24000487731202e-05
2	89772060	89789784	5	gain	-	-1	germline	1	2.21037946330718e-05	1.229465011654e-05
2	89789784	89794848	3	gain	-	-1	germline	1	0.0147766554784574	0.0380129792041806
2	89794848	89807508	5	gain	-	-1	germline	1	0.000107577835959848	9.08464071084358e-05
2	89810040	89815104	6	gain	-	-1	germline	1	0.0143083231259475	0.0366354702655477
2	89815104	89817636	3	gain	-	-1	germline	1	0.0832992289434617	0.270097174442281
2	89817636	89827764	5	gain	-	-1	germline	1	0.00053217936923439	0.000671108670829756
2	89827764	89842956	34	gain	-	-1	germline	1	2.20959548533045e-05	1.22913888099818e-05
2	89842956	89850552	4	gain	-	-1	germline	1	0.00270080274437723	0.00495872997707014
2	91410264	91415328	4	gain	-	-1	germline	1	0.0143109639128974	0.036639888290229
2	114775560	114785688	1	loss	A	-1	germline	1	0.000540102235469682	0.000683955327588248
2	125620116	125627712	1	loss	A	-1	germline	1	0.00271019140580998	0.00497280053433202
2	136345668	136348200	0	loss	-	-1	somatic	0	0.0832657558827784	0.270040118756024
2	179202300	179212428	1	loss	A	-1	germline	1	0.000534722887159655	0.000674385670634159
2	183929544	183939672	1	loss	A	-1	germline	1	0.000534325257299994	0.000673995540342087
2	193824600	193827132	0	loss	-	-1	germline	1	0.0832663756552361	0.270040118756024
2	239111952	239114484	2	neutral	AA	100	somatic	0	0.0869703023593554	0.276416128312725
2	239122080	239127144	2	neutral	AA	19.1814	somatic	0	0.0834749345121459	0.269622508228217
2	239372748	239375280	2	neutral	AA	100	somatic	0	0.490096201257663	0.712559842291996
2	240069048	240094368	2	neutral	AA	54.5683	somatic	0	8.26466312512832e-05	0.00226235240483663
2	240669132	240671664	2	neutral	AA	27.7576	somatic	0	0.126096647874073	0.337970203910611
2	240785604	240793200	2	neutral	AA	98.3776	somatic	0	0.00468564244156419	0.0092512549314494
2	241013484	241053996	2	neutral	AA	13.4629	germline	1	8.94186991625811e-05	0.00303467978157801
2	241279344	241307196	2	neutral	AA	54.5685	germline	1	1.73854926942855e-06	1.35086043018262e-06
3	0	20256	3	gain	AAB	-1	somatic	0	NA	NA
3	20256	169644	3	gain	AAB	23.8713	somatic	0	6.94896519553368e-32	0
3	15675612	15898428	2	neutral	AA	52.3027	somatic	0	1.54653412383798e-05	0.000122648612451592
3	32060184	32067780	1	loss	A	-1	germline	1	0.0143355340344478	0.0367186071630199
3	34703592	34706124	45	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBBBB	2.406	somatic	0	0.0832676152113624	0.270042271641053
3	42157800	42162864	2	neutral	AA	100	somatic	0	0.299970370938918	0.749834234528885
3	48001656	48090276	2	neutral	AA	52.9725	somatic	0	4.06847191021281e-05	0.000923920608447037
3	52992228	53004888	1	loss	A	-1	germline	1	0.000110403213581346	9.7885205740722e-05
3	58041036	58073952	2	neutral	AA	36.8942	germline	1	0.365686092153265	0.716716757475583
3	63056928	63107568	2	neutral	AA	61.5028	germline	1	0.113680271247011	0.0225012060444595
3	68690628	68698224	1	loss	A	-1	germline	1	0.00270813620816417	0.00496992357750448
3	70141464	70247808	2	neutral	AA	27.8435	somatic	0	0.202076609471233	0.28139258619021
3	90394932	90458232	2	neutral	AA	3.11978	germline	1	0.0282270502098583	0.222393198543132
3	90668388	90713964	1	loss	A	-1	germline	1	3.51690329649338e-13	3.31956684362922e-14
3	101644608	101664864	2	neutral	AA	54.5678	somatic	0	0.646876282674588	0.758007596441348
3	110392668	110450904	2	neutral	AA	54.5777	somatic	0	0.89350927658606	0.996702439527836
3	113317128	113334852	2	neutral	AA	54.5678	somatic	0	0.413141881759859	0.762900176216072
3	151793400	151833912	1	loss	A	-1	germline	1	4.40519718613186e-12	2.95319324550292e-14
3	152742900	152791008	2	neutral	AA	37.4499	somatic	0	0.00473466123861598	0.0566512392833807
3	162412608	162425268	1	loss	A	-1	germline	1	0.000107904832057435	9.12544374049862e-05
3	184641036	184714464	2	neutral	AA	22.961	germline	1	0.0916258925793664	0.0419470367381001
3	185299356	185367720	2	neutral	AA	54.5678	germline	1	0.776427441120265	0.668271352272348
4	0	146856	3	gain	-	-1	somatic	0	4.13175439930458e-20	0
4	12665064	12667596	72	gain	-	-1	somatic	0	0.0832657558827784	0.270039042318225
4	12713172	12715704	5	gain	-	-1	somatic	0	0.0832744330372551	0.270054112732607
4	31814580	31837368	1	loss	A	-1	somatic	0	0.0027380854289457	0.00503078237621257
4	35237844	35242908	0	loss	-	-1	germline	1	0.0143081275292006	0.036636648359883
4	40294248	40296780	4	gain	-	-1	germline	1	0.0832750528620317	0.270055189214269
4	60464160	60466692	0	loss	-	-1	germline	1	0.0832669954314308	0.270041195196967
4	62803728	62811324	1	loss	A	-1	germline	1	0.00271943054262807	0.00500484948979907
4	68518452	68622264	1	loss	A	-1	germline	1	1.05861587604376e-18	0
4	70620012	70622544	0	loss	-	-1	germline	1	0.0832657558827784	0.270040118756024
4	107141580	107154240	1	loss	A	-1	germline	1	0.000108079383064832	9.14177691423435e-05
4	118203888	118208952	1	loss	A	-1	germline	1	0.0143328892484931	0.0366879275554145
4	137168568	137181228	1	loss	A	-1	germline	1	0.000113967347785992	0.000106420125818185
4	172067124	172072188	1	loss	A	-1	germline	1	0.0143221186427761	0.0366622801136219
4	172502628	172512756	1	loss	A	-1	germline	1	0.000536826253608706	0.000677612332617761
4	185519640	185524704	1	loss	A	-1	germline	1	0.0143775163248839	0.0368412541861228
4	186170364	186177960	1	loss	A	-1	germline	1	0.0144784003088667	0.0371409449027036
4	189269532	189279660	1	loss	A	-1	germline	1	0.000575718790715142	0.000791947656458736
5	757068	764664	5	gain	AAAAB	11.5666	germline	1	0.00270066018076993	0.00495861038442258
5	6210996	6238848	2	neutral	AA	100	germline	1	0.307464953219763	0.0626209064189389
5	17321412	17394840	2	neutral	AA	36.3786	somatic	0	0.37019961391252	0.634312323523587
5	26945544	27034164	2	neutral	AA	100	somatic	0	0.0770008304513925	0.207683703504525
5	40965228	40985484	2	neutral	AA	36.3786	somatic	0	0.583372203001635	0.828779219809098
5	46269768	46277364	1	loss	A	-1	germline	1	0.0143406289092181	0.0367318889487006
5	46368516	46403964	2	neutral	AA	100	germline	1	0.940420266581536	0.713466591170743
5	46403964	46411560	1	loss	A	-1	germline	1	0.00278392499125562	0.00518686392975787
5	49599348	49601880	206	gain	-	-1	germline	1	0.0832651361140577	0.270037965883546
5	50151324	50265264	2	neutral	AA	5.0723	somatic	0	5.85196620748896e-05	0.00178448470367576
5	84338388	84563736	2	neutral	AA	62.9325	somatic	0	0.0182474234539918	0.0433203404873352
5	86918496	86923560	1	loss	A	-1	germline	1	0.0143268176651653	0.036691761279493
5	91281132	91316580	2	neutral	AA	56.0518	somatic	0	0.929005974527694	0.843492377958647
5	92342040	92347104	1	loss	A	-1	germline	1	0.0144047448733602	0.0369283581969027
5	99008796	99011328	0	loss	-	-1	germline	1	0.083268234995031	0.270043348088249
5	123346380	123361572	2	neutral	AA	100	somatic	0	0.544019396182268	0.596644011481763
5	133798476	133801008	0	loss	-	-1	germline	1	0.0832688547824366	0.270044424538589
5	135778500	135786096	1	loss	A	-1	germline	1	0.00274297975503728	0.00507195737353627
5	156176292	156237060	2	neutral	AA	27.8378	somatic	0	0.650592416573282	0.385066268594539
5	178584492	178587024	6	gain	AAAABB	20.3652	germline	1	0.0832707141670757	0.270047653908412
5	180949380	181002552	1	loss	A	-1	germline	1	2.19543620751283e-15	0
6	250668	255732	3	gain	-	-1	germline	1	0.0148250207762253	0.0375672235830797
6	255732	296244	3	gain	AAB	1.88195	germline	1	1.97958104620524e-11	1.88626891883814e-13
6	296244	377268	4	gain	AABB	15.7214	germline	1	2.39187009921827e-21	0
6	377268	382332	4	gain	AAAB	100	germline	1	0.0143092033404978	0.0366363538331941
6	19040640	19048236	1	loss	A	-1	germline	1	0.00270593961641584	0.00497010334259917
6	22514544	22663932	2	neutral	AA	100	somatic	0	0.672439154157452	0.568081832939434
6	23793204	23884356	2	neutral	AA	100	somatic	0	0.079847266976862	0.194990268469498
6	32488092	32566584	0	loss	-	-1	germline	1	4.2463881129965e-10	1.02697850223876e-11
6	32581776	32591904	1	loss	A	-1	germline	1	0.00270224658824968	0.00496423409785063
6	34161744	34182000	2	neutral	AA	54.5873	somatic	0	0.070039012003763	0.139919484470753
6	35658156	35663220	1	loss	A	-1	germline	1	0.0143208462248637	0.0366743648840562
6	35787288	35799948	4	gain	AAAB	21.5967	germline	1	0.000107617713731927	9.08792778777645e-05
6	50908392	50915988	2	neutral	AA	100	somatic	0	0.948127628929001	0.990775285116396
6	53594844	53670804	2	neutral	AA	12.552	somatic	0	0.57878830831013	0.284354303119788
6	54063264	54070860	1	loss	A	-1	germline	1	0.0143098879848377	0.0366395937407453
6	60231216	60238812	3	gain	-	-1	germline	1	0.00271205124638598	0.00498336244129516
6	60238812	60241344	4	gain	-	-1	germline	1	0.0832756726905454	0.270056265699063
6	61413660	61421256	0	loss	-	-1	germline	1	0.0143090077331366	0.0366395937407453
6	61509876	61557984	2	neutral	AA	18.1893	somatic	0	0.636996749323562	0.684419944156209
6	64214052	64257096	2	neutral	AA	100	somatic	0	0.0275647701395463	0.0407357560935309
6	65690208	65695272	1	loss	A	-1	somatic	0	0.0143379832941536	0.0367006096727431
6	66457404	66543492	2	neutral	AA	100	somatic	0	0.365087575347995	0.449366333615018
6	67571484	67586676	2	neutral	AA	100	somatic	0	0.118973592149556	0.215752274715173
6	73349508	73354572	2	neutral	AA	36.3786	somatic	0	0.328565107560458	0.811477497751754
6	78256524	78327420	1	loss	A	-1	germline	1	5.13663210880913e-20	0
6	78811032	78818628	1	loss	A	-1	germline	1	0.00271029867261951	0.00498023973977391
6	98583420	98621400	2	neutral	AA	54.5686	somatic	0	0.361652857965829	0.681467005014742
6	103290408	103315728	1	loss	A	-1	germline	1	2.06404219972444e-07	3.14579190474618e-08
6	118254528	118287444	2	neutral	AA	100	somatic	0	0.686034703586675	0.339170532056424
6	119895264	119953500	2	neutral	AA	100	germline	1	0.504863105785753	0.907402118790909
6	123693264	123728712	2	neutral	AA	100	somatic	0	0.835253651122113	0.998305335722304
6	135013836	135049284	2	neutral	AA	100	somatic	0	0.00499632487112569	0.0019278099097908
6	145688748	145726728	2	neutral	AA	50.2876	somatic	0	0.0615813801643519	0.207834391259023
6	148405584	148423308	2	neutral	AA	15.3608	somatic	0	0.543247642502089	0.801417397043903
6	153421476	153431604	3	gain	AAB	0.669073	germline	1	0.000634955751383283	0.00103094168553231
6	157308096	157315692	5	gain	AAABB	3.29415	germline	1	0.0143088121281341	0.0366357647860248
6	160789596	160860492	2	neutral	AA	6.28778	somatic	0	0.683737922791408	0.523072759898779
6	165311748	165319344	1	loss	A	-1	germline	1	0.0027147178579267	0.0049834225108315
6	169474356	169580700	2	neutral	AA	43.0337	somatic	0	1.26570618862783e-14	4.77118344832661e-12
6	170168124	170170656	1	loss	A	-1	germline	1	0.0832769123587844	0.270058418678038
7	903924	906456	5	gain	-	-1	somatic	0	0.0832731933989135	0.270051959778679
7	9760860	9765924	1	loss	A	-1	germline	1	0.0143370035459811	0.0367186071630199
7	16860588	16878312	1	loss	A	-1	germline	1	4.6332289412215e-06	1.68701765934642e-06
7	23998296	24000828	0	loss	-	-1	germline	1	0.0832700943684589	0.270046577448665
7	26097324	26104920	1	loss	A	-1	germline	1	0.00270654664151248	0.00496543138665717
7	54394956	54397488	0	loss	-	-1	germline	1	0.0832657558827784	0.270040118756024
7	57486528	57496656	3	gain	-	-1	germline	1	0.00256160871597669	0.0222398083850182
7	61046520	61054116	3	gain	-	-1	germline	1	0.00270169392273482	0.00496046436760544
7	61097160	62299860	2	neutral	AA	1.81915	germline	1	3.11701705624645e-07	5.24580432297306e-05
7	62299860	62358096	3	gain	AAB	0.568224	somatic	0	5.88770761287367e-08	2.14087750183278e-06
7	62401140	62406204	4	gain	-	-1	germline	1	0.0143093011450629	0.0366366483598861
7	62436588	62530272	2	neutral	AA	27.4314	somatic	0	0.107665214932233	0.0551134497690347
7	62684724	62702448	1	loss	A	-1	germline	1	2.24059451537611e-05	1.27671940741703e-05
7	65226852	65229384	0	loss	-	-1	germline	1	0.0832657558827784	0.270040118756024
7	65229384	65750976	2	neutral	AA	6.80122	somatic	0	0.0617514611911593	0.117699550980045
7	65796552	65821872	3	gain	AAB	0.169723	germline	1	4.35726306750496e-08	4.19062662349035e-09
7	74093916	74172408	2	neutral	AA	32.9847	somatic	0	3.8970633351067e-09	9.14409548080641e-09
7	75040884	75063672	2	neutral	AA	100	germline	1	0.12940791372142	0.343043902783054
7	79259196	79302240	2	neutral	AA	100	somatic	0	0.688642531193565	0.676430654200227
7	100948308	100955904	3	gain	AAB	2.46771	germline	1	0.00270271019381856	0.00496309691860664
7	100955904	100960968	9	gain	AAAAABBBB	2.64791	germline	1	0.0143075407531117	0.0366337031861875
7	100960968	100973628	3	gain	AAB	0.812072	germline	1	0.000107830401200763	9.13333158480967e-05
7	111066180	111081372	2	neutral	AA	100	somatic	0	0.134199477876652	0.184217200519618
7	113329788	113413344	2	neutral	AA	100	somatic	0	0.169686619218828	0.186437896051073
7	125371980	125389704	2	neutral	AA	100	somatic	0	0.292839619203373	0.447009720449794
7	131653872	131777940	2	neutral	AA	67.2919	somatic	0	0.251946791919439	0.0691074877104334
7	143847984	143850516	5	gain	-	-1	germline	1	0.0832738132162157	0.270053036254077
7	158594352	158596884	6	gain	AAAABB	100	somatic	0	0.0832707141670757	0.270047653908412
7	159245076	159285588	3	gain	AAA	100	somatic	0	1.99853852640015e-11	1.91846538655227e-13
7	159285588	159331164	3	gain	-	-1	somatic	0	5.54550236399909e-08	1.46581330406903e-08
8	643128	650724	1	loss	A	-1	germline	1	0.0144502597453422	0.0370391269113046
8	5985648	5990712	2	neutral	AA	100	somatic	0	0.172003804951249	0.421255752893586
8	8396112	8441688	2	neutral	AA	34.6073	somatic	0	0.443427146267402	0.238459049706919
8	8998728	9008856	2	neutral	AA	36.3804	somatic	0	0.729550784252845	0.816416629510119
8	9568428	9677304	2	neutral	AA	100	somatic	0	0.0841271889465525	0.0419935350093571
8	25114908	25132632	1	loss	A	-1	germline	1	4.61786116050901e-06	1.67401879191953e-06
8	25208592	25213656	0	loss	-	-1	germline	1	0.0143074429591607	0.0366337031861844
8	31401864	31406928	2	neutral	AA	100	somatic	0	0.384659662008384	0.716937270189497
8	32523540	32551392	2	neutral	AA	56.5766	somatic	0	0.683048677079206	0.629393082507661
8	35956932	35964528	2	neutral	AA	27.2839	somatic	0	0.407577172408771	0.370040347830751
8	36212664	36220260	1	loss	A	-1	germline	1	0.00270638594629076	0.00496866538870977
8	39375132	39529584	1	loss	A	-1	germline	1	2.16950398704777e-38	0
8	40324632	40332228	1	loss	A	-1	germline	1	0.0027168851236821	0.0049993643500269
8	40663920	40820904	2	neutral	AA	14.1256	somatic	0	0.0943758354387353	0.123373564331457
8	42332508	42337572	0	loss	-	-1	germline	1	0.0143077363427827	0.036634881230805
8	43236432	43238964	7	gain	AAAABBB	5.08452	germline	1	0.0832707141670757	0.270047653908412
8	43238964	43241496	12	gain	AAAAAAAABBBB	2.72958	germline	1	0.0832694745735793	0.270045500992072
8	43241496	43244028	4	gain	AAAA	5.94933	germline	1	0.0832793917401092	0.270062724673607
8	61811184	61823844	2	neutral	AA	54.5678	germline	1	0.383373693216261	0.794575140910466
8	62122620	62127684	1	loss	A	-1	germline	1	0.0143693664340154	0.0367563974902639
8	62884752	63160740	2	neutral	AA	59.6204	somatic	0	0.103363983432991	0.222219680266082
8	68293104	68336148	2	neutral	AA	50.9816	germline	1	0.214110934393862	0.354655286051642
8	74344584	74425608	2	neutral	AA	61.7695	somatic	0	0.463516730260092	0.31075015725237
8	80413788	80439108	2	neutral	AA	54.5686	somatic	0	0.413994450429081	0.455790107093665
8	87184356	87617328	2	neutral	AA	100	somatic	0	0.000503647881305978	0.00862335457006336
8	87721140	88083216	2	neutral	AA	20.3353	germline	1	0.00388549023194262	0.0293603977151174
8	89131464	89139060	2	neutral	AA	100	germline	1	0.241995229809369	0.415412585681311
8	104242440	104267760	2	neutral	AA	100	germline	1	0.471296040509482	0.465782155425169
8	107772048	107777112	2	neutral	AA	100	somatic	0	0.312456089904991	0.554149382609824
8	111281400	111283932	0	loss	-	-1	germline	1	0.083268234995031	0.270043348088249
8	112582848	112618296	2	neutral	AA	100	somatic	0	0.513852062487506	0.58168265521379
8	114621108	114623640	0	loss	-	-1	germline	1	0.0832688547824366	0.270044424538589
8	120090228	120156060	2	neutral	AA	73.7541	germline	1	0.447135091454879	0.388834388835587
8	127764720	127795104	2	neutral	AA	100	somatic	0	0.158442832347	0.292917415378198
8	128217948	128255928	2	neutral	AA	55.0709	somatic	0	0.43775922564334	0.474620411631574
8	133400952	133433868	2	neutral	AA	33.3554	somatic	0	0.0959338194125308	0.113549029784648
8	144118908	144154356	2	neutral	AA	10.3296	somatic	0	0.396673391088687	0.369058160783006
8	144508836	144511368	3	gain	-	-1	somatic	0	0.0847240822360896	0.272563231311612
8	144511368	144615180	2	neutral	AA	82.7854	germline	1	2.07529580626371e-15	1.55431223447522e-15
9	15814872	15817404	0	loss	-	-1	germline	1	0.083268234995031	0.270043348088249
9	40912056	40914588	7	gain	-	-1	germline	1	0.0832707141670757	0.270047653908412
9	40922184	40924716	5	gain	-	-1	germline	1	0.0832731933989135	0.270051959778679
9	40924716	40929780	6	gain	-	-1	germline	1	0.0143079319348123	0.0366342922043548
9	69126132	69128664	0	loss	-	-1	germline	1	0.0832676152113624	0.270042271641042
9	69979416	70235148	2	neutral	AA	100	somatic	0	0.0382886299664702	0.0780209230654418
9	90592428	90739284	2	neutral	AA	27.284	somatic	0	0.10340981360659	0.280919267012476
9	94149888	94175208	2	neutral	AA	100	somatic	0	0.182889561683037	0.43544811292039
9	98649252	98717616	2	neutral	AA	2.32272	somatic	0	0.664202332291154	0.914251089105676
9	102751092	102781476	2	neutral	AA	67.947	somatic	0	0.0366256787278701	0.103633207603946
9	108215148	108374664	2	neutral	AA	12.2325	germline	1	9.16959078340265e-05	0.000598086622867533
9	113552604	113570328	2	neutral	AA	100	somatic	0	0.313740366862056	0.53121137996002
9	118611540	118664712	2	neutral	AA	6.63973	somatic	0	0.381614282625721	0.285512851549036
9	121158732	121163796	2	neutral	AA	54.5678	germline	1	0.678061890505938	0.717151955774746
9	125946744	125959404	2	neutral	AA	100	somatic	0	0.240104190877394	0.343749885248792
9	129035784	129063636	2	neutral	AA	54.5678	somatic	0	0.000234364386875478	0.00133849121272778
9	129425712	129438372	3	gain	AAB	0.338472	germline	1	0.000115147549299299	0.000110270096169818
9	130927188	130932252	2	neutral	AA	27.5676	somatic	0	0.10946387582816	0.139774364576851
9	133563000	133590852	2	neutral	AA	25.8737	somatic	0	0.121114664191753	0.386442572229921
9	133899756	133957992	2	neutral	AA	6.78256	somatic	0	0.00174732956501136	0.0455670694083249
9	135656964	135692412	2	neutral	AA	27.2849	somatic	0	0.190366256035754	0.23054822718834
9	136046892	136051956	2	neutral	AA	100	somatic	0	0.102714510421635	0.187592251605893
10	83556	106344	3	gain	AAB	15.6382	somatic	0	2.14087261422024e-07	3.59581059372616e-08
10	106344	119004	3	gain	-	-1	somatic	0	0.000115016052203459	0.0001040936010126
10	293712	741876	2	neutral	AA	24.3553	somatic	0	7.40412277663173e-21	1.11022302462516e-16
10	5846388	5851452	1	loss	A	-1	germline	1	0.0143213356045671	0.0366749544741921
10	19671108	19709088	2	neutral	AA	27.2839	somatic	0	0.0978777052689465	0.127763127738852
10	23109564	23152608	2	neutral	AA	27.2895	somatic	0	0.0780463435085009	0.306283577448192
10	26937948	26940480	4	gain	AAAB	19.4538	somatic	0	0.0832800115947836	0.270063801180328
10	38111664	38486400	2	neutral	AA	20.9589	germline	1	0.963807961270616	0.580714709675423
10	38486400	38493996	3	gain	AAA	4.62299	germline	1	0.00270231790745332	0.00496160099392862
10	38493996	38524380	3	gain	AAA	100	germline	1	1.38765350154985e-07	4.4410497201941e-07
10	38524380	38526912	4	gain	AAAA	2.4673	germline	1	0.0832781520419723	0.270060571669564
10	38526912	38529444	20	gain	AAAAAAAAAAAAAAAAAABB	8.07109	germline	1	0.083268234995031	0.27004334808826
10	38529444	38575020	2	neutral	AA	-1	somatic	0	NA	NA
10	38575020	38577552	2	neutral	AA	12.1262	germline	1	0.0866542733249392	0.27587564773222
10	38577552	38580084	5	gain	AAAAA	4.44934	germline	1	0.0832719537755204	0.270049806837281
10	38580084	38582616	4	gain	AAAA	2.76136	germline	1	0.0832800115947836	0.270063801180328
10	38582616	38835816	2	neutral	AA	0.501104	germline	1	1.31279072396115e-13	7.87925280576474e-12
10	39557436	39562500	1	loss	A	-1	germline	1	0.0143190845800698	0.0366510827057812
10	41838768	41843832	2	neutral	AA	2.02879	germline	1	0.0657022936603932	0.101042676824872
10	41856492	41899536	35	gain	AAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBB	20.4287	somatic	0	4.59417804045953e-06	1.66354885711151e-06
10	42299592	42322380	3	gain	AAB	13.1254	germline	1	1.13667712583802e-06	9.65262583418891e-07
10	42360360	42446448	2	neutral	AA	40.2031	somatic	0	0.747905477320627	0.917437220931711
10	46515372	46560948	4	gain	AABB	0.603796	germline	1	9.26068691232459e-13	3.44169137633799e-15
10	49842420	50242476	2	neutral	AA	100	somatic	0	0.0263697533318047	0.0551325840869721
10	56752248	56767440	1	loss	A	-1	germline	1	2.23529564099624e-05	1.24635828377961e-05
10	65545884	65556012	1	loss	A	-1	germline	1	0.000535848114869027	0.000680448894366803
10	68918508	68928636	2	neutral	AA	54.7239	somatic	0	0.168743282011842	0.127018562955261
10	71296056	71361888	2	neutral	AA	100	somatic	0	0.214383871140178	0.497123277027742
10	72253152	72321516	2	neutral	AA	21.9414	somatic	0	1.59543192583304e-06	1.93341325781526e-05
10	76494252	76501848	1	loss	A	-1	germline	1	0.0143340646557764	0.0367103450614807
10	83667408	83687664	2	neutral	AA	54.579	somatic	0	0.900319430033206	0.749758518064304
10	86417160	86470332	2	neutral	AA	100	somatic	0	0.667880823787166	0.727753003172273
10	103249896	103252428	4	gain	AAAB	30.1586	germline	1	0.0832762925227963	0.27005734218699
10	106270572	106273104	0	loss	-	-1	germline	1	0.083268234995031	0.270043348088249
10	131620956	131626020	1	loss	A	-1	somatic	0	0.0146591473734348	0.0376066805286411
10	132742632	132757824	2	neutral	AA	21.8271	somatic	0	5.95540090317815e-05	0.000204772912851925
10	133109772	133112304	4	gain	AAAB	11.2955	germline	1	0.0832793917401092	0.270062724673607
11	18924168	18941892	3	gain	-	-1	germline	1	4.60373000890415e-06	1.66729760375794e-06
11	48713148	48715680	0	loss	-	-1	germline	1	0.083268234995031	0.270043348088249
11	54754500	54777288	1	loss	A	-1	germline	1	1.01367708151111e-06	2.78758538696522e-07
11	54929208	54936804	3	gain	AAB	6.83979	germline	1	0.00270472593940678	0.0049654912580458
11	55597656	55683744	1	loss	A	-1	germline	1	1.48842270184247e-22	0
11	62672064	62682192	2	neutral	AA	36.3786	somatic	0	0.0113352532467102	0.0315425071190565
11	65097720	65105316	2	neutral	AA	55.071	somatic	0	0.212848848303753	0.671537284972088
11	65806680	65816808	2	neutral	AA	100	somatic	0	0.0271695754138644	0.0894425262830505
11	68075352	68128524	2	neutral	AA	37.0131	somatic	0	2.48520750843565e-07	5.60416043415835e-06
11	77177892	77203212	2	neutral	AA	5.37747	germline	1	0.00291215646108693	0.0217419800324113
11	81788664	81806388	1	loss	A	-1	germline	1	4.64008451133168e-06	1.67849835241984e-06
11	82439388	82469772	2	neutral	AA	54.5679	somatic	0	0.0214279173641409	0.0131428471349657
11	85054944	85108116	2	neutral	AA	18.1893	somatic	0	0.233657123139583	0.472644481795183
11	91238088	91271004	2	neutral	AA	100	somatic	0	0.0532976878215961	0.134722312929525
11	97398444	97408572	2	neutral	AA	100	somatic	0	0.297668160194701	0.593978931454267
11	97588344	97661772	2	neutral	AA	25.0825	somatic	0	0.00402198667301765	0.0386856886390925
11	102842244	102989100	2	neutral	AA	23.6428	somatic	0	0.111124739930141	0.0570918643178582
11	103748700	103756296	2	neutral	AA	100	somatic	0	0.993941513191654	0.936126943168969
11	105632508	105667956	2	neutral	AA	100	somatic	0	0.267117289924852	0.45057024729525
11	108632928	108645588	2	neutral	AA	100	somatic	0	0.571280560930599	0.454443860539844
11	108655716	108772188	2	neutral	AA	100	somatic	0	0.616130290827365	0.964407754007836
11	112220772	112276476	2	neutral	AA	32.6702	germline	1	0.942585903812717	0.917838118956677
11	115828872	115851660	2	neutral	AA	28.6562	somatic	0	0.788864997150511	0.659285549547902
11	121290396	121308120	2	neutral	AA	100	somatic	0	0.373914371897957	0.398427690676196
11	122974176	122991900	2	neutral	AA	18.243	somatic	0	0.962666091189421	0.872844262616347
11	123948996	124047744	2	neutral	AA	100	somatic	0	0.0151897114588076	0.116636771808974
11	126929160	126934224	2	neutral	AA	100	germline	1	0.0954638050638887	0.156469800763436
11	134963196	135074604	3	gain	AAB	2.13348	somatic	0	4.67735926124752e-23	0
11	135074604	135086622	3	gain	AAB	-1	somatic	0	NA	NA
12	2253480	2256012	6	gain	AAAABB	6.75349	germline	1	0.0832707141670757	0.270047653908412
12	33235032	33242628	1	loss	A	-1	germline	1	0.00271094235494401	0.00497280053433202
12	34678272	37615392	2	neutral	AA	2.89326	somatic	0	0.886793027113767	0.729552623323795
12	37615392	37625520	1	loss	A	-1	germline	1	0.0143189867165197	0.0366622801136219
12	37625520	37734396	2	neutral	AA	0.731677	germline	1	0.0445717008306387	0.20656219565153
12	38111664	38190156	2	neutral	AA	8.62943	somatic	0	0.165750593640661	0.127139168160614
12	41304516	41347560	2	neutral	AA	100	somatic	0	0.231951663043869	0.531146297508716
12	45510168	45517764	1	loss	A	-1	germline	1	0.00279045434930944	0.00522958410718499
12	59542512	59545044	0	loss	-	-1	germline	1	0.0832669954314308	0.270041195196967
12	60127404	60132468	1	loss	A	-1	germline	1	0.0143122355562425	0.036647841909372
12	64244436	64287480	2	neutral	AA	36.4385	somatic	0	0.55493481667486	0.772504586953048
12	71961972	71964504	1	loss	A	-1	somatic	0	0.0832781520419723	0.270060571669553
12	79760532	79768128	3	gain	-	-1	germline	1	0.0027074038299486	0.00497645886963816
12	80325168	80474556	2	neutral	AA	58.0923	somatic	0	0.280593679001167	0.327811048689786
12	81745620	81750684	1	loss	A	-1	germline	1	0.014330930425285	0.0366820302026847
12	89642928	89660652	2	neutral	AA	100	somatic	0	0.520478569921984	0.814197216953242
12	90091092	90098688	1	loss	A	-1	germline	1	0.00273292885315321	0.00502357655700791
12	121920864	121961376	2	neutral	AA	13.6925	somatic	0	0.373258584889259	0.385009327743994
12	122513352	122652612	2	neutral	AA	19.5868	somatic	0	0.000394286468807025	0.0113419307727378
12	124318668	124338924	2	neutral	AA	11.6694	somatic	0	0.868786257252916	0.455193662649431
12	131144940	131223432	2	neutral	AA	19.9311	germline	1	2.3595603067945e-10	5.68642322118507e-09
12	133142688	133241436	3	gain	AAB	1.99314	somatic	0	1.36166420475325e-25	0
12	133241436	133275309	3	gain	AAB	-1	somatic	0	NA	NA
13	21152328	21154860	3	gain	-	-1	somatic	0	0.0832893098633828	0.270079949157008
13	21375144	21377676	4	gain	-	-1	germline	1	0.0832793917401092	0.270062724673607
13	22018272	22023336	1	loss	A	-1	germline	1	0.0143644588281182	0.0368022047591587
13	63026544	63044268	3	gain	-	-1	germline	1	4.96922946880589e-06	2.27647529060793e-06
13	63059460	63067056	5	gain	-	-1	germline	1	0.0027024248894837	0.00496441367430023
13	63067056	63069588	3	gain	-	-1	germline	1	0.0833258912126946	0.270143471369854
13	72270876	72273408	0	loss	-	-1	germline	1	0.0832738132162157	0.270053036254066
13	82591308	82598904	1	loss	A	-1	germline	1	0.0027104238221335	0.00497274058216457
13	88070556	88108536	2	neutral	AA	100	somatic	0	0.101609102814683	0.381149920010852
13	88625064	88630128	2	neutral	AA	100	somatic	0	0.0883827698932032	0.197301639496615
13	89298576	89306172	2	neutral	AA	100	germline	1	0.639752627132046	0.593715497263961
13	90210096	90212628	0	loss	-	-1	germline	1	0.0832719537755204	0.27004980683727
13	91220364	91222896	2	neutral	AA	100	somatic	0	0.116713899569593	0.324016697886446
13	96119784	96127380	2	neutral	AA	60.7971	somatic	0	0.504148425650207	0.413920680066056
13	101242020	101244552	0	loss	-	-1	germline	1	0.0832694745735793	0.27004550099206
13	101396472	101416728	2	neutral	AA	27.2936	germline	1	0.0493364283117293	0.203099123085934
13	107136516	107156772	2	neutral	AA	100	somatic	0	0.40976087939204	0.69818580826449
13	108199956	108225276	2	neutral	AA	55.0709	somatic	0	0.647430810012345	0.688855001504433
13	108293640	108298704	1	loss	A	-1	germline	1	0.0144263043189726	0.0368850799735633
13	110152128	110157192	2	neutral	AA	21.8271	somatic	0	0.0354542244462968	0.0959264288550757
13	111428256	111663732	2	neutral	AA	3.13788	germline	1	2.93433924200394e-19	0
13	112162536	112177728	2	neutral	AA	7.51215	somatic	0	0.0197377280761741	0.0582447799030364
13	113296872	113317128	2	neutral	AA	54.6186	somatic	0	0.498638543147505	0.842696251431362
13	114152688	114157752	1	loss	A	-1	somatic	0	0.0145602317470795	0.0372465931714555
13	114213456	114246372	2	neutral	AA	30.0944	somatic	0	5.42322823576072e-05	3.42980502809898e-05
13	114246372	114297012	3	gain	AAB	25.0276	somatic	0	1.11976578888329e-14	0
13	114297012	114342588	3	gain	-	-1	somatic	0	2.13348971101454e-12	1.13353770814228e-13
13	114342588	114364328	3	gain	AAB	-1	somatic	0	NA	NA
14	0	16093392	3	gain	AAB	-1	germline	1	NA	NA
14	16093392	16095924	6	gain	-	-1	germline	1	0.0832713339694295	0.27004873037128
14	16095924	18488664	3	gain	AAB	-1	somatic	0	NA	NA
14	18488664	18491196	1	loss	A	-1	germline	1	0.0835089932218562	0.270461246001597
14	18491196	18658308	3	gain	AAB	-1	germline	1	NA	NA
14	18658308	18660840	6	gain	AAAAAB	100	germline	1	0.0832707141670757	0.270047653908412
14	18660840	18681096	3	gain	AAB	-1	somatic	0	NA	NA
14	18693756	19726812	3	gain	AAB	-1	somatic	0	NA	NA
14	19726812	19957224	3	gain	AAB	0.323513	germline	1	1.92388708570003e-30	0
14	21484020	21486552	1	loss	A	-1	somatic	0	0.0832973690430624	0.270093944640201
14	24210984	24248964	2	neutral	AA	15.6068	germline	1	0.829153290614218	0.586327828736063
14	37663500	37668564	1	loss	A	-1	germline	1	0.0143348483078679	0.0366964801902667
14	45662088	45869712	2	neutral	AA	47.7241	somatic	0	0.8493837200711	0.784874659148539
14	52202244	52331376	2	neutral	AA	76.1956	somatic	0	7.47565432788418e-05	2.37320068459113e-05
14	53025144	53030208	2	neutral	AA	100	somatic	0	0.281598679266632	0.514183961790361
14	54491172	54529152	2	neutral	AA	27.2839	somatic	0	0.539809724464916	0.964305200347578
14	65601588	65611716	1	loss	A	-1	germline	1	0.000539181275409966	0.00068485657334616
14	79638996	79649124	0	loss	-	-1	germline	1	0.0143093989502178	0.0366395937407453
14	82031736	82036800	1	loss	A	-1	somatic	0	0.0143744228141068	0.0367720550059917
14	99925380	99927912	3	gain	AAB	44.2622	germline	1	0.0832930294062835	0.270086408545016
14	99927912	99930444	9	gain	AAAAAABBB	23.2067	germline	1	0.0832694745735793	0.270045500992072
14	100165920	100168452	1	loss	A	-1	somatic	0	0.0833147294217104	0.270124090555839
14	101723100	101725632	1	loss	A	-1	somatic	0	0.0832806314531952	0.270064877690169
14	106865592	106880784	3	gain	-	-1	somatic	0	2.32126236991115e-05	1.35293997161057e-05
15	17025168	17027700	5	gain	-	-1	germline	1	0.0832719537755204	0.270049806837281
15	17080872	17083404	14	gain	-	-1	germline	1	0.0832694745735793	0.270045500992072
15	20271192	20273724	5	gain	AAAAB	28.3272	germline	1	0.0832738132162157	0.270053036254077
15	20339556	20342088	12	gain	AAAAAAAABBBB	21.1648	germline	1	0.0832694745735793	0.270045500992072
15	20342088	20362344	5	gain	AAABB	3.4867	germline	1	4.59597120310634e-06	1.66387654765288e-06
15	20380068	20382600	3	gain	AAB	64.3544	germline	1	0.0837176288523269	0.27082351804573
15	20390196	20420580	5	gain	AAABB	73.6454	germline	1	0.000532196587075362	0.000671097880406757
15	20645928	20668716	4	gain	AAAB	4.34191	germline	1	9.6438022691429e-07	2.25258607211565e-07
15	23886888	23891952	2	neutral	AA	100	germline	1	0.0416521834917711	0.0801614409238786
15	34437732	34521288	1	loss	A	-1	germline	1	5.42488757054917e-22	0
15	40853820	40861416	2	neutral	AA	100	somatic	0	0.997758116780192	0.986661367697418
15	47069880	47705412	2	neutral	AA	97.5115	somatic	0	0.00580467665087202	0.00172321964662348
15	52579512	52599768	2	neutral	AA	41.6291	somatic	0	0.448553031007993	0.703021145533313
15	58722144	58732272	2	neutral	AA	54.5678	germline	1	0.0702066708250435	0.195011284383265
15	67401840	67417032	2	neutral	AA	100	somatic	0	0.226454028663056	0.278809792040598
15	76590468	76603128	1	loss	A	-1	germline	1	0.000110319414191213	9.6995331735017e-05
15	86612124	86827344	2	neutral	AA	12.7642	germline	1	0.878691131209323	0.294512995221817
15	91050720	91063380	2	neutral	AA	36.3796	somatic	0	0.789958526341271	0.638986409165686
16	0	35448	3	gain	AAB	-1	somatic	0	NA	NA
16	35448	40512	3	gain	-	-1	somatic	0	0.0143950081524431	0.0367844669923739
16	40512	93684	3	gain	AAB	6.98712	somatic	0	3.92866421011268e-14	7.21644966006352e-15
16	845688	848220	4	gain	AABB	18.8222	germline	1	0.0832762925227963	0.27005734218699
16	914052	957096	2	neutral	AA	44.6076	somatic	0	5.26637770907315e-07	5.3894492900719e-06
16	1022928	1025460	5	gain	AAAAA	7.49376	germline	1	0.0832744330372551	0.270054112732607
16	2830776	2891544	2	neutral	AA	68.2205	somatic	0	0.226648987490812	0.269464012373483
16	4924740	4947528	2	neutral	AA	36.3786	somatic	0	0.956312090024927	0.855464250965958
16	7436484	7441548	2	neutral	AA	100	germline	1	0.709522796786226	0.758270563785823
16	10036848	10214088	2	neutral	AA	22.9113	somatic	0	0.121379342880585	0.0758430990614229
16	21557448	21582768	4	gain	AABB	4.75483	germline	1	4.32777722881363e-08	4.12993650389382e-09
16	22615824	22676592	4	gain	AAAB	3.24848	somatic	0	9.88207907033714e-17	0
16	22676592	22699380	4	gain	AABB	4.75614	germline	1	2.0370947143582e-07	3.04935874329004e-08
16	29786448	29804172	2	neutral	AA	54.5678	somatic	0	0.0929376012271061	0.103447419296986
16	34062996	34065528	24	gain	AAAAAAAAAAAAAAAABBBBBBBB	62.3357	germline	1	0.083268234995031	0.27004334808826
16	34083252	34085784	13	gain	AAAAAAAABBBBB	100	germline	1	0.0832694745735793	0.270045500992072
16	34085784	34095912	2	neutral	AA	21.2977	germline	1	0.215098191747425	0.348496923069297
16	34095912	34098444	10	gain	AAAAAAABBB	3.33605	germline	1	0.0832694745735793	0.270045500992072
16	34098444	34100976	4	gain	AAAB	8.13251	germline	1	0.0832800115947836	0.270063801180328
16	34100976	34161744	2	neutral	AA	5.3798	germline	1	0.248536931438776	0.464891181589497
16	34161744	34192128	2	neutral	AA	-1	germline	1	0.0143093011450629	0.0366369428886498
16	34192128	34954260	2	neutral	AA	0.932723	germline	1	1.04475119208448e-14	1.00067731878539e-11
16	36124044	36126576	5	gain	-	-1	germline	1	0.0832719537755204	0.270049806837281
16	46401432	46403964	18	gain	AAAAAAAAAAAAAAAAAA	8.18174	germline	1	0.0832694745735793	0.270045500992072
16	46403964	46477392	2	neutral	AA	0.528013	somatic	0	1.61143564530673e-05	0.000328448905426937
16	48315624	48366264	2	neutral	AA	54.5686	somatic	0	0.207935223998511	0.338643912790516
16	53832852	53858172	2	neutral	AA	100	somatic	0	0.879743074902597	0.782412486285427
16	66730860	66743520	2	neutral	AA	100	somatic	0	0.420630129848552	0.641468072793574
16	70149060	70161720	4	gain	AAAB	26.8171	germline	1	0.000107583335513154	9.08464071084358e-05
16	74109108	74111640	4	gain	AABB	100	somatic	0	0.0832769123587844	0.270058418678049
16	74372436	74374968	4	gain	AAAB	9.87404	germline	1	0.0832769123587844	0.270058418678049
16	75438408	75458664	2	neutral	AA	100	somatic	0	0.0105509655115276	0.0236673060708487
16	76504380	76511976	1	loss	A	-1	germline	1	0.0143751593110377	0.036835631203156
16	78337548	78350208	1	loss	A	-1	germline	1	0.000107979311387724	9.11792879991769e-05
16	78917376	78924972	2	neutral	AA	100	somatic	0	0.37486711380737	0.213029698085882
16	80942976	80950572	1	loss	A	-1	germline	1	0.00271654470462997	0.00497993957455278
16	83163540	83176200	1	loss	A	-1	germline	1	0.000108012428879434	9.11463141516355e-05
16	87186888	87224868	2	neutral	AA	7.29865	somatic	0	0.403105888799022	0.129488021324453
16	89037780	89075760	2	neutral	AA	8.19786	somatic	0	0.00243562966735131	0.0246636618458466
17	21289056	21304248	4	gain	AABB	0.256975	germline	1	2.21175206187539e-05	1.23130475412347e-05
17	21673920	21858756	4	gain	-	-1	somatic	0	2.04154736878899e-07	3.08742577059817e-08
17	21858756	21967632	3	gain	-	-1	somatic	0	1.29576841123641e-27	0
17	21967632	21977760	24	gain	-	-1	germline	1	0.0143072473730276	0.0366334086802113
17	21977760	22155000	6	gain	AAAABB	0.434149	germline	1	4.26773921734161e-12	2.53130849614536e-14
17	22157532	22160064	4	gain	AABB	4.69922	germline	1	0.0832769123587844	0.270058418678049
17	26783496	26803752	3	gain	-	-1	germline	1	2.84827244352212e-06	1.17016532230618e-05
17	26803752	26824008	4	gain	-	-1	germline	1	2.21232655296917e-05	1.2323147649318e-05
17	26824008	26836668	5	gain	-	-1	germline	1	0.000107566837649016	9.08336270820653e-05
17	26836668	26877180	3	gain	-	-1	somatic	0	6.10899656485185e-10	5.7372218087437e-11
17	53777148	53782212	1	loss	A	-1	somatic	0	0.0143237827243665	0.0366581544046641
17	64320396	64338120	2	neutral	AA	54.5678	somatic	0	0.674369028733979	0.711013118996511
17	74939604	74964924	2	neutral	AA	100	somatic	0	0.880730916668645	0.973315030026732
17	74964924	75030756	2	neutral	AA	45.7571	somatic	0	1.47848972198722e-05	0.000913010489540733
17	78218544	78228672	2	neutral	AA	100	germline	1	0.0412051249232167	0.166186349224381
17	80742948	80745480	3	gain	AAB	2.2622	somatic	0	0.0832893098633828	0.270079949157008
17	82586244	82588776	5	gain	AAABB	41.3772	germline	1	0.0832738132162157	0.270053036254077
18	40679112	40686708	1	loss	A	-1	germline	1	0.00271235536965504	0.00498408331954181
18	41284260	41289324	0	loss	-	-1	germline	1	0.0143098879848377	0.0366410665088667
18	47036964	47052156	2	neutral	AA	49.3064	somatic	0	0.83648279696909	0.981369542621334
18	48123192	48151044	2	neutral	AA	100	somatic	0	0.381958512918785	0.380874276876663
18	51164124	51257808	2	neutral	AA	100	somatic	0	0.741868712556524	0.76006069120827
18	53678400	53683464	1	loss	A	-1	germline	1	0.0144199024289928	0.0369488270551346
18	54711456	54726648	2	neutral	AA	100	somatic	0	0.0664117970571533	0.344722519574258
18	60342624	60380604	2	neutral	AA	54.5903	somatic	0	0.121002523723722	0.180101429775566
18	65272428	65305344	2	neutral	AA	100	somatic	0	0.210580325454376	0.457619945998445
18	67120788	67186620	2	neutral	AA	43.1154	somatic	0	0.448932595153634	0.682157717119277
18	69078024	69090684	1	loss	A	-1	germline	1	0.000108601167911193	9.22997508272516e-05
18	72653208	72693720	2	neutral	AA	62.319	somatic	0	0.0879751957743366	0.231412408892869
18	74615508	74618040	3	gain	-	-1	germline	1	0.0832893098633828	0.270079949157008
18	77972940	77990664	2	neutral	AA	54.5678	germline	1	5.91114703814939e-05	0.000282583237298351
18	78907248	78912312	2	neutral	AA	54.5678	somatic	0	0.120042644998918	0.227874270771454
18	79198428	79200960	4	gain	AABB	12.2284	germline	1	0.0832781520419723	0.270060571669564
18	79519992	79522524	1	loss	A	-1	germline	1	0.0832905496960662	0.270082102273804
18	79831428	79899792	2	neutral	AA	19.0548	germline	1	2.45353102225811e-10	4.1245570292503e-09
18	80135268	80160588	3	gain	AAB	28.4757	somatic	0	4.81866791305014e-08	5.28070631666822e-09
18	80160588	80165652	3	gain	-	-1	somatic	0	0.0153079890081481	0.0394254818324139
18	80165652	80175780	3	gain	AAA	72.2681	somatic	0	0.000581118501804995	0.00081466424528609
18	80175780	80244144	3	gain	AAB	21.8339	somatic	0	6.63668136522654e-17	0
18	80244144	80259336	2	neutral	AA	6.01863	germline	1	0.00146352155462702	0.0100542437433589
18	80259336	80373285	3	gain	AAB	-1	somatic	0	NA	NA
19	7449144	7451676	11	gain	AAAAAAABBBB	9.22748	germline	1	0.0832694745735793	0.270045500992072
19	8884788	8943024	2	neutral	AA	1.82822	germline	1	5.10740309769483e-05	0.000386440546045419
19	15911088	15959196	2	neutral	AA	8.69005	somatic	0	0.000654048628141465	0.000664300022413133
19	19726812	19729344	0	loss	-	-1	germline	1	0.083268234995031	0.270043348088249
19	22957644	22960176	0	loss	-	-1	germline	1	0.083268234995031	0.270043348088249
19	24329988	24907284	4	gain	AABB	0.285096	somatic	0	1.13032473599726e-20	0
19	27338004	27340536	5	gain	AAABB	2.82379	germline	1	0.0832738132162157	0.270053036254077
19	27345600	27378516	6	gain	AAAABB	0.159881	germline	1	9.22374995673791e-09	5.58300738973116e-10
19	27378516	27383580	4	gain	AAAB	2.486	germline	1	0.0143100836028137	0.0366384155635431
19	27383580	27398772	6	gain	AAAABB	0.697979	germline	1	2.21015544258779e-05	1.229465011654e-05
19	29510460	29515524	1	loss	A	-1	germline	1	0.0143443530969247	0.0367292322553714
19	34146552	34695996	2	neutral	AA	20.277	somatic	0	0.000678316179335826	0.000941184768653902
19	48637188	48756192	2	neutral	AA	11.8536	germline	1	4.54658649507106e-13	7.51424034106662e-10
20	60768	63300	9	gain	-	-1	germline	1	0.0832694745735793	0.270045500992072
20	65832	70896	3	gain	-	-1	germline	1	0.0143170295694135	0.0366555023777008
20	3613164	3623292	2	neutral	AA	100	somatic	0	0.273473296631966	0.198729456317294
20	18174696	18212676	2	neutral	AA	19.0564	somatic	0	0.382773348673911	0.814474853256301
20	25573200	28763520	2	neutral	AA	0.793134	somatic	0	0.216714747162012	0.451813995207973
20	28773648	28788840	7	gain	-	-1	germline	1	0.000532144935109617	0.000671054720341346
20	28804032	28872396	8	gain	-	-1	germline	1	2.03576074923074e-07	3.04748395407728e-08
20	29262324	29264856	13	gain	-	-1	germline	1	0.0832694745735793	0.270045500992072
20	29264856	29376264	3	gain	-	-1	somatic	0	9.95266976918933e-14	1.65423230669148e-14
20	29409180	29411712	6	gain	-	-1	germline	1	0.0832713339694295	0.27004873037128
20	29885196	29892792	7	gain	-	-1	germline	1	0.0143078341385027	0.0366339976942354
20	29892792	29895324	4	gain	-	-1	germline	1	0.0832769123587844	0.270058418678049
20	30976488	30979020	4	gain	-	-1	somatic	0	0.0832750528620317	0.270055189214269
20	31072704	31075236	45	gain	-	-1	germline	1	0.0832676152113624	0.270042271641053
20	31161324	31166388	3	gain	-	-1	germline	1	0.014325055372424	0.0366649325696171
20	31166388	31168920	5	gain	-	-1	germline	1	0.0832713339694295	0.27004873037128
20	31168920	31184112	3	gain	-	-1	germline	1	3.16963597240892e-05	2.76547029322005e-05
20	31184112	31189176	21	gain	-	-1	germline	1	0.0143072473730276	0.0366334086802113
20	31189176	31239816	3	gain	AAA	13.6295	germline	1	1.11871331390206e-06	3.58603806205338e-07
20	31239816	31242348	62	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	23.2295	germline	1	0.0832657558827784	0.270039042318225
20	31242348	31247412	3	gain	AAA	3.72449	germline	1	0.0169827230290659	0.0447570692862896
20	34652952	34658016	1	loss	A	-1	somatic	0	0.0143343095429956	0.0367068046587431
20	58517052	58522116	2	neutral	AA	54.5678	somatic	0	0.552555608474242	0.782736794041192
20	64087452	64089984	4	gain	AAAA	29.8486	germline	1	0.0832793917401092	0.270062724673607
20	64092516	64095048	1	loss	A	-1	somatic	0	0.0832818711812305	0.270067030719272
21	0	10692636	7	gain	AAAAABB	-1	somatic	0	1.08829283020788e-20	0
21	10692636	10695168	55	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBBBBBB	100	germline	1	0.0832669954314308	0.270041195196978
21	10695168	10755936	7	gain	AAAAABB	0.367097	germline	1	2.00781429787801e-13	4.44089209850063e-16
21	10763532	10766064	6	gain	AAAABB	3.80815	germline	1	0.0832707141670757	0.270047653908412
21	14660280	14672940	2	neutral	AA	100	somatic	0	0.506780885005884	0.799133043256045
21	15956664	15971856	2	neutral	AA	37.4335	somatic	0	0.849045461517464	0.987846040313623
21	17832876	17939220	2	neutral	AA	54.6578	somatic	0	0.457750923021107	0.738227268676896
21	21722028	21790392	2	neutral	AA	36.3841	somatic	0	0.0463909623852794	0.128825064313066
21	24469248	24494568	2	neutral	AA	51.2188	somatic	0	0.846022797247983	0.838572880823491
21	24522420	24527484	2	neutral	AA	100	somatic	0	0.106944069427512	0.1895426620878
21	27621588	27679824	2	neutral	AA	10.7387	germline	1	0.957691052025778	0.341467461369316
21	31784196	31786728	3	gain	AAB	14.3338	germline	1	0.0832930294062835	0.270086408545016
21	32283000	32462772	2	neutral	AA	4.72011	somatic	0	0.000523086177640612	0.00240528326095846
21	35430276	35437872	2	neutral	AA	54.5678	somatic	0	0.817130155961873	0.9889760719526
21	39747336	39752400	2	neutral	AA	36.3813	germline	1	0.610716179094959	0.547879135693697
21	41805852	41808384	4	gain	AAAA	9.63807	somatic	0	0.0832812513153442	0.270065954203165
21	41856492	41861556	2	neutral	AA	54.5678	somatic	0	0.0462842040155632	0.0831734446088794
21	43335180	43337712	4	gain	AAAA	100	germline	1	0.0832837308013135	0.270070260286428
21	44337852	44368236	2	neutral	AA	11.2472	germline	1	0.0169532618174805	0.12389333993704
21	45553212	45555744	1	loss	A	-1	germline	1	0.0833097690144887	0.270115477186496
21	46593864	46662228	3	gain	AAB	16.6865	somatic	0	2.3368970655301e-18	0
21	46664760	46677420	2	neutral	AA	100	somatic	0	0.00151499666990963	0.00527304514875426
21	46679952	46709983	3	gain	AAB	-1	somatic	0	NA	NA
22	10728084	10730616	8	gain	-	-1	germline	1	0.0832700943684589	0.270046577448676
22	10781256	10783788	5	gain	-	-1	germline	1	0.0832738132162157	0.270053036254077
22	11211696	11214228	9	gain	-	-1	germline	1	0.0832694745735793	0.270045500992072
22	11619348	11629476	4	gain	AAAB	31.624	germline	1	0.0143116486315442	0.0366428338989851
22	17875920	17878452	3	gain	AAB	8.14266	somatic	0	0.0832855904550329	0.270073489881764
22	19174836	19481208	2	neutral	AA	58.4808	somatic	0	0.000292113676189424	0.000484945831954131
22	21038388	21040920	1	loss	A	-1	somatic	0	0.0846518247329504	0.272438619488636
22	21094092	21099156	2	neutral	AA	54.5681	somatic	0	0.183491589128961	0.437569743355696
22	21668856	21691644	2	neutral	AA	54.5755	somatic	0	0.00852232244871381	0.0521392922704231
22	22347432	22352496	2	neutral	AA	1.4039	germline	1	0.0504838173076004	0.0882994984962993
22	23170332	23172864	2	neutral	AA	100	somatic	0	0.24455902116695	0.486955678023473
22	23527344	23529876	2	neutral	AA	100	somatic	0	0.283048092253221	0.528139613693099
22	23719776	23757756	2	neutral	AA	100	somatic	0	8.60982699670464e-07	1.14017375471009e-05
22	28897716	28900248	2	neutral	AA	100	somatic	0	0.841795497172085	0.914972485138753
22	29118000	29120532	4	gain	AAAA	34.2085	germline	1	0.0832781520419723	0.270060571669564
22	29495268	29497800	2	neutral	AA	100	germline	1	0.0876290468347418	0.277536723287655
22	34194660	34214916	2	neutral	AA	100	somatic	0	0.0250676998048221	0.00796375636582503
22	35247972	35250504	1	loss	A	-1	somatic	0	0.0833265113477077	0.27014454811149
22	36425352	36432948	2	neutral	AA	58.0998	somatic	0	0.043997749594173	0.0815934286352124
22	36726660	36731724	2	neutral	AA	54.6578	somatic	0	0.411193516739828	0.875979771638654
22	36746916	36751980	1	loss	A	-1	germline	1	0.014317910256408	0.0366563863680345
22	37311552	37316616	2	neutral	AA	100	somatic	0	0.309721094808172	0.366940407334486
22	37347000	37354596	1	loss	A	-1	germline	1	0.00271754815685239	0.00499177863705258
22	37805292	37860996	2	neutral	AA	55.2954	somatic	0	1.82093956986121e-06	7.43638611799824e-06
22	38861136	38883924	2	neutral	AA	32.2175	somatic	0	0.00157154958989046	0.00343442806136218
22	39408048	39418176	2	neutral	AA	54.5678	somatic	0	0.0124135197013776	0.0746319966585522
22	40218288	40228416	2	neutral	AA	54.5873	somatic	0	0.00267107836031206	0.00416090963419991
22	43195920	43198452	2	neutral	AA	100	germline	1	0.113166132491537	0.318628894346514
22	43836516	43839048	2	neutral	AA	54.5678	somatic	0	0.140856198468235	0.359025239318412
22	45140496	45181008	2	neutral	AA	70.4203	somatic	0	0.100267415474301	0.146255100874534
22	45327864	45330396	3	gain	AAB	9.28796	somatic	0	0.0832893098633828	0.270079949157008
22	46545756	46548288	2	neutral	AA	100	somatic	0	0.425861322017668	0.661106398502206
22	47616792	47624388	2	neutral	AA	54.5678	somatic	0	0.0113967588253764	0.0389234907319862
22	48637188	48665040	2	neutral	AA	18.5245	somatic	0	0.00178573703102896	0.0190955786220991
22	48697956	48703020	2	neutral	AA	100	somatic	0	0.481442503876905	0.733675820555955
22	50163984	50222220	2	neutral	AA	42.6761	somatic	0	0.00972519957492263	0.0256093409231967
22	50310840	50407056	2	neutral	AA	44.4755	somatic	0	0.039919901105616	0.0778938520394115
X	5134896	5139960	1	loss	A	-1	somatic	0	0.0146582482036871	0.0376917413223239
X	26791092	26861988	2	neutral	AA	100	somatic	0	0.000284552737157057	0.00103080803546041
X	28639452	28738200	2	neutral	AA	56.9194	germline	1	0.0931467491292496	0.193482048026727
X	58443624	62687256	2	neutral	AA	0.843233	somatic	0	0.203299098113828	0.19038083179102
X	75129504	75448536	2	neutral	AA	28.3094	somatic	0	0.0395212585740144	0.00513281621056627
X	77864064	77869128	1	loss	A	-1	germline	1	0.0143416088759168	0.0367304129872079
X	82728036	82733100	1	loss	A	-1	germline	1	0.0143314201089477	0.0366846839087707
X	100100088	100403928	2	neutral	AA	66.2538	somatic	0	0.000196988883293649	0.000120612189025038
X	126777240	126779772	0	loss	-	-1	germline	1	0.0832657558827784	0.270040118756024
X	141381816	141386880	1	loss	A	-1	germline	1	0.0147178983240031	0.03787024951508
X	143478312	143496036	2	neutral	AA	100	germline	1	0.325946935674066	0.231698777165758
X	145339332	145344396	1	loss	A	-1	germline	1	0.0143246637777834	0.0366649325696141
X	155561016	155566080	1	loss	A	-1	germline	1	0.0144726695439216	0.0370114818148255
