chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	5669473	5674431	3	gain	-	-1	somatic	0	0.0143228124963385	0.0366682186548097
1	16611779	16881990	7	gain	-	-1	somatic	0	4.59791070102559e-06	1.66440791637967e-06
1	16881990	16943965	3	gain	-	-1	germline	1	2.42159219604611e-08	2.59122377999077e-08
1	31431241	31433720	6	gain	-	-1	germline	1	0.0832808814889709	0.270065323757171
1	55660987	55668424	1	loss	A	-1	somatic	0	0.00390850995223023	0.00950349046817489
1	125080424	125082903	9	gain	-	-1	germline	1	0.0832730016699137	0.270051638620094
1	125082903	125085382	6	gain	-	-1	germline	1	0.0832839123494347	0.270070587406223
1	125085382	125087861	1	loss	A	-1	somatic	0	0.108279571789752	0.311087095800543
1	125149836	125157273	3	gain	-	-1	germline	1	0.00270299454351675	0.00496244659498257
1	125162231	125164710	5	gain	-	-1	germline	1	0.0832839123494347	0.270070587406223
1	151035554	151040512	2	neutral	AA	100	somatic	0	0.16747823126922	0.187129490136885
1	153472411	153507117	2	neutral	AA	100	somatic	0	0.0216899474115375	0.0168265329505279
1	154116951	154129346	2	neutral	AA	100	somatic	0	0.332291683172999	0.636139082330546
1	162674459	162696770	2	neutral	AA	100	somatic	0	0.602401254821674	0.866294672701891
1	164151943	164164338	2	neutral	AA	100	germline	1	0.400244559903587	0.210468095982223
1	172897855	172902813	2	neutral	AA	100	somatic	0	0.143230738339952	0.223754754236729
1	173710967	173715925	2	neutral	AA	27.2839	somatic	0	0.717131740261388	0.936551972957517
1	177558375	177615392	2	neutral	AA	100	somatic	0	0.238092997440246	0.349264605781173
1	180431536	180540612	2	neutral	AA	63.8169	somatic	0	0.512735308500687	0.696129660992541
1	181601624	181628893	2	neutral	AA	100	germline	1	0.900623444933636	0.913953350432818
1	183738522	183758354	2	neutral	AA	36.3786	germline	1	0.0327017352916802	0.0588256251447775
1	193989187	194031330	2	neutral	AA	54.8585	somatic	0	0.426100977738847	0.317023536032638
1	195568310	195722008	2	neutral	AA	36.8946	somatic	0	0.885320514291773	0.947901106148125
1	196093858	196123606	2	neutral	AA	100	somatic	0	0.68008065892356	0.739555777575553
1	197192055	197229240	2	neutral	AA	100	somatic	0	0.0916246644836559	0.123878705717685
1	201307195	201329506	2	neutral	AA	16.3105	germline	1	0.869019314070614	0.978249388272836
1	201701356	201745978	2	neutral	AA	27.459	somatic	0	0.0285524420268836	0.0266407999395049
1	205090149	205290948	2	neutral	AA	90.4681	germline	1	0.933360400385059	0.633219333104051
1	207368350	207373308	0	loss	-	-1	somatic	0	0.0144011106601081	0.0369177056516616
1	209901888	209983695	2	neutral	AA	100	somatic	0	0.431435300839135	0.49455941110951
1	219822846	219855073	2	neutral	AA	21.933	somatic	0	0.190854025805422	0.283226833397601
1	220301293	220318646	2	neutral	AA	62.2102	somatic	0	0.781335608692145	0.942450532669047
1	223675212	223744624	2	neutral	AA	26.1888	somatic	0	0.352013877028532	0.18258015587589
1	224012356	224014835	8	gain	AAAAAAAA	2.79986	germline	1	0.0832790630155803	0.270062165603684
1	225519588	225529504	2	neutral	AA	40.2668	somatic	0	0.719429996631918	0.824977437042355
1	228191950	228266320	2	neutral	AA	12.674	germline	1	0.762730889020912	0.998300699300265
1	231055195	231062632	2	neutral	AA	100	somatic	0	0.743570507857973	0.974142867798605
1	231332843	231342759	2	neutral	AA	100	germline	1	0.460479492145529	0.514763555716931
1	234766258	234776174	2	neutral	AA	100	somatic	0	0.120730652138869	0.166516770659844
1	234776174	234783611	9	gain	AAAAAABBB	100	germline	1	0.00270069336286849	0.00495852746396952
1	234820796	234840628	2	neutral	AA	100	germline	1	0.450982934026459	0.865784781688453
1	236062775	236095002	2	neutral	AA	20.5515	somatic	0	0.182764834620599	0.325409983857604
1	236095002	236097481	7	gain	AAAAABB	20.4934	germline	1	0.0832808814889709	0.270065323757171
1	237592318	237609671	2	neutral	AA	100	somatic	0	0.962415282294611	0.866228453424701
1	240182873	240185352	4	gain	AABB	100	somatic	0	0.0832869432992491	0.270075851130159
1	240777833	240800144	2	neutral	AA	54.5682	somatic	0	0.369343994797202	0.348802341767209
1	244550871	244570703	2	neutral	AA	88.7283	somatic	0	0.44849918166127	0.619722025160909
1	245867220	245916800	2	neutral	AA	89.9357	somatic	0	6.44049080320647e-08	1.59576138969442e-08
1	248772608	248913911	3	gain	AAB	5.56995	somatic	0	4.39947439980139e-36	0
1	248913911	248926306	3	gain	-	-1	somatic	0	0.00279393458454874	0.00510526040520065
1	248926306	248956422	3	gain	AAB	-1	somatic	0	NA	NA
2	0	14874	3	gain	AAB	-1	somatic	0	NA	NA
2	14874	29748	3	gain	-	-1	somatic	0	2.44504403292858e-05	1.5071202637329e-05
2	29748	153698	3	gain	AAB	19.857	somatic	0	1.31827948418623e-30	0
2	1822065	1827023	3	gain	-	-1	somatic	0	0.0154338740792327	0.0398839314695962
2	3178078	3183036	4	gain	AAAA	3.30115	somatic	0	0.0143218552937277	0.0366687951306752
2	13617147	13627063	2	neutral	AA	36.3787	somatic	0	0.441036646134822	0.39217560065069
2	18292541	18297499	1	loss	A	-1	somatic	0	0.0215586104252361	0.0591461269915731
2	18329726	18409054	2	neutral	AA	100	somatic	0	0.377903661399959	0.631311207612599
2	24782563	24822227	2	neutral	AA	54.5678	somatic	0	0.566296369749319	0.675037801041964
2	26587275	26664124	2	neutral	AA	33.8208	somatic	0	0.184387392786606	0.204249783861864
2	26728578	26740973	2	neutral	AA	100	somatic	0	0.653953422785191	0.862836789963769
2	33067381	33074818	2	neutral	AA	100	somatic	0	0.585032314158328	0.586365738282511
2	33830913	33860661	2	neutral	AA	2.97691	somatic	0	0.801458521841393	0.712951883179047
2	35752138	35767012	1	loss	A	-1	somatic	0	4.95189885403794e-05	2.8540049099357e-05
2	40229212	40246565	2	neutral	AA	100	somatic	0	0.320893676949308	0.495454248432563
2	54193419	54213251	2	neutral	AA	29.6961	somatic	0	0.292546067172552	0.150670386453632
2	68108046	68286534	2	neutral	AA	92.744	somatic	0	0.121545936833851	0.222836049960272
2	74751766	74764161	2	neutral	AA	100	somatic	0	0.260139741868962	0.369046435963318
2	89772027	89789380	5	gain	-	-1	germline	1	4.59966559331444e-06	1.66486594554982e-06
2	89789380	89796817	3	gain	AAA	52.3036	germline	1	0.00552519813623065	0.0177319699609014
2	89796817	89806733	4	gain	AABB	4.7703	germline	1	0.000532522473934252	0.000671368465062439
2	89809212	89824086	5	gain	AAAAA	1.05813	germline	1	2.21241853938431e-05	1.23061163128657e-05
2	89824086	89829044	14	gain	AAAAAAAAABBBBB	56.1075	germline	1	0.0143081734680985	0.036636812709685
2	89829044	89841439	27	gain	AAAAAAAAAAAAAAAAAABBBBBBBBB	6.74378	germline	1	0.000107526628618101	9.08096754383969e-05
2	89841439	89851355	4	gain	AABB	14.4932	germline	1	0.000532579757274757	0.000671442359959973
2	91410646	91415604	5	gain	-	-1	germline	1	0.0143123820320633	0.0366408451830731
2	104779893	104824515	2	neutral	AA	12.1267	somatic	0	0.279622875462917	0.275881774382547
2	112754836	112801937	2	neutral	AA	18.1893	somatic	0	0.00610179558997614	0.00746199589733132
2	117041027	117045985	0	loss	-	-1	somatic	0	0.0143393810367552	0.0367311012147067
2	120962805	120972721	2	neutral	AA	13.6706	somatic	0	0.139753861255733	0.0586230378251004
2	125620846	125628283	1	loss	A	-1	somatic	0	0.00661777803093636	0.00966353425387112
2	125685300	125695216	1	loss	A	-1	somatic	0	0.00110491789405824	0.00162568633600302
2	125891057	125898494	1	loss	A	-1	somatic	0	0.0213838187299457	0.0585921807834022
2	129475691	129515355	2	neutral	AA	100	somatic	0	0.509482325757928	0.46322835370858
2	131493597	132242255	2	neutral	AA	81.6869	somatic	0	0.0176491655798909	0.0218009949335731
2	132242255	132247213	3	gain	AAB	0.887315	somatic	0	0.0143195582376868	0.0366552500439534
2	132252171	132279440	2	neutral	AA	1.07226	somatic	0	0.3886976534856	0.908544665460306
2	134577473	134664238	2	neutral	AA	16.3694	somatic	0	0.00832438195852601	0.00976892564783693
2	137946434	137951392	2	neutral	AA	100	somatic	0	0.662408923386848	0.962387363188439
2	150185257	150232358	2	neutral	AA	58.2513	somatic	0	0.412696093564261	0.580740594602547
2	151003327	151134714	2	neutral	AA	41.5789	somatic	0	0.0384651796144999	0.0550801120267559
2	151677615	151781733	2	neutral	AA	100	somatic	0	0.177280522529994	0.595051388625054
2	169464440	169469398	1	loss	A	-1	somatic	0	0.0205885774047136	0.0533947051599024
2	169593348	169690029	2	neutral	AA	79.637	somatic	0	0.499316100452253	0.599456875924077
2	174533995	174600928	2	neutral	AA	39.6432	somatic	0	0.751635592316358	0.979974096153571
2	176400682	176408119	0	loss	-	-1	germline	1	0.0143458022949029	0.0367510240565954
2	179546533	179558928	1	loss	A	-1	somatic	0	0.000425875194508025	0.000273737737348623
2	189182406	189192322	2	neutral	AA	100	somatic	0	0.832085391824401	0.728178756298107
2	195114653	195119611	1	loss	A	-1	somatic	0	0.0194223422158162	0.0460305938200396
2	198711682	198719119	2	neutral	AA	100	somatic	0	0.299782343916054	0.709736457062315
2	212304039	212333787	2	neutral	AA	54.5678	somatic	0	0.976257946216696	0.792929612139092
2	217227333	217284350	2	neutral	AA	81.9684	somatic	0	0.158809445954077	0.523679459744291
2	218097462	218362715	2	neutral	AA	37.6748	somatic	0	0.356523424827869	0.120595058993537
2	226300473	226307910	1	loss	A	-1	somatic	0	0.00578492912278813	0.00945713846788676
3	0	19832	3	gain	AAB	-1	somatic	0	NA	NA
3	19832	133866	3	gain	AAB	1.91555	somatic	0	1.84899361705052e-24	0
3	4690268	4700184	2	neutral	AA	100	somatic	0	0.441874346868313	0.801551121467482
3	10213480	10220917	2	neutral	AA	54.5679	somatic	0	0.402081414835423	0.832629502290293
3	11066256	11073693	2	neutral	AA	100	somatic	0	0.814059646557913	0.616135620310453
3	12000839	12132226	2	neutral	AA	88.6199	somatic	0	0.0176789083581284	0.0235736032699869
3	14368284	14390595	2	neutral	AA	36.4129	germline	1	0.227944765682013	0.341321013860032
3	14777319	14784756	2	neutral	AA	100	somatic	0	0.325761810431662	0.654427878274738
3	25977441	26002231	2	neutral	AA	100	somatic	0	0.250501696098079	0.275111396239916
3	27789590	27886271	2	neutral	AA	54.6835	somatic	0	0.911216382575354	0.982185592164637
3	42150437	42160353	2	neutral	AA	54.5678	somatic	0	0.234151197161601	0.530882691166139
3	45502045	45511961	1	loss	A	-1	somatic	0	0.0013816394038848	0.00168914843002599
3	49986556	50016304	2	neutral	AA	36.3832	somatic	0	0.000863117983408658	0.00037273215527367
3	52993583	53005978	1	loss	A	-1	somatic	0	0.000303551257514796	0.000256767959942561
3	53553837	53573669	2	neutral	AA	54.6067	somatic	0	0.60085226988501	0.331472864023581
3	62046891	62071681	2	neutral	AA	100	germline	1	0.105436223090733	0.0541627597220549
3	62418741	62475758	2	neutral	AA	36.3786	somatic	0	0.880691611911419	0.433363080839458
3	63363240	63412820	2	neutral	AA	100	somatic	0	0.161125097306846	0.246755490546945
3	68690611	68698048	1	loss	A	-1	somatic	0	0.00501050791068056	0.00904626937552166
3	69310361	69374815	2	neutral	AA	36.5182	somatic	0	0.466463347520739	0.584007868821394
3	88076391	88088786	2	neutral	AA	100	somatic	0	0.724709725107689	0.833879942331026
3	89353076	89367950	1	loss	A	-1	somatic	0	0.000245264717070533	0.000227709184030922
3	90394256	90416567	2	neutral	AA	1.24977	somatic	0	0.000989693431466727	0.00229055172298931
3	90701652	90714047	1	loss	A	-1	somatic	0	0.000511895428204978	0.000269411231305861
3	94561455	94643262	2	neutral	AA	13.65	germline	1	0.417785385263071	0.78614117711353
3	95136583	95198558	2	neutral	AA	25.2094	somatic	0	0.125614004099872	0.148370688076285
3	99516976	99720254	2	neutral	AA	27.4014	somatic	0	0.0197132036985362	0.0564807794842596
3	102719844	102774382	2	neutral	AA	32.7508	germline	1	0.933794924096043	0.867117129318851
3	102841315	102885937	2	neutral	AA	30.3417	somatic	0	0.8031537484813	0.648425174269774
3	106708555	106720950	2	neutral	AA	100	somatic	0	0.175619819715622	0.34693593066582
3	117355860	117368255	2	neutral	AA	36.5209	somatic	0	0.677720382148945	0.844952270971005
3	117849181	117938425	2	neutral	AA	54.5679	somatic	0	0.599947971423455	0.793072201698517
3	124946558	124951516	2	neutral	AA	100	somatic	0	0.048867133561582	0.0813729807761997
3	128608041	128637789	2	neutral	AA	4.577	somatic	0	0.982937022921674	0.875219571778149
3	128684890	128694806	3	gain	-	-1	somatic	0	0.000535207465110962	0.000678166836096783
3	129800440	129941743	2	neutral	AA	63.9871	somatic	0	0.018537020894374	0.0270490754076197
3	130328467	130482165	2	neutral	AA	32.2183	somatic	0	0.00380201970814065	0.0225014878279681
3	137418407	137443197	2	neutral	AA	100	somatic	0	0.792785250139549	0.589161016607385
3	140824553	140829511	1	loss	A	-1	somatic	0	0.0173292344996276	0.0457400933765385
3	144486036	144543053	2	neutral	AA	54.6196	somatic	0	0.0890297799770716	0.184025212786453
3	152104003	152158541	2	neutral	AA	40.3394	somatic	0	0.0283787514585513	0.121183904885779
3	159739323	159828567	2	neutral	AA	36.558	somatic	0	0.453928131301791	0.0374031086001516
3	162706686	162800888	2	neutral	AA	49.3081	germline	1	0.95789284042485	0.915992858491864
3	162999208	163001687	0	loss	-	-1	germline	1	0.083265122454824	0.270037953989224
3	166246698	166554094	2	neutral	AA	54.5679	somatic	0	0.979500313333322	0.678048669494674
3	176789885	176804759	2	neutral	AA	100	somatic	0	0.091022698389489	0.115139246801583
3	183381546	183391462	2	neutral	AA	100	somatic	0	0.161499981505961	0.096702186033341
3	185300292	185344914	2	neutral	AA	100	somatic	0	0.0372414865280404	0.0747931095069838
3	189536903	189554256	2	neutral	AA	100	somatic	0	0.134618959291707	0.316710703838119
3	189645979	189653416	1	loss	A	-1	somatic	0	0.00478439998146084	0.00827825829292272
3	195107216	195156796	2	neutral	AA	13.6502	somatic	0	0.00106993387336577	0.00358228492570445
3	197772141	197801889	2	neutral	AA	32.7176	somatic	0	0.000590935012909446	0.00139495778020482
3	198037394	198042352	2	neutral	AA	54.5678	somatic	0	0.0595170103427355	0.127486122738889
4	0	69412	3	gain	AAB	-1	somatic	0	NA	NA
4	69412	126429	3	gain	AAB	12.983	somatic	0	1.53769391641484e-16	0
4	126429	133866	0	loss	-	-1	germline	1	0.0143125733563683	0.036641421282397
4	2079881	2102192	2	neutral	AA	54.571	somatic	0	6.21048105295807e-05	0.00177617996032298
4	11668653	11710796	2	neutral	AA	36.3786	somatic	0	0.150415510177535	0.121829864950165
4	21862301	21894528	2	neutral	AA	54.5678	somatic	0	0.883825623093853	0.401394499372333
4	31329602	31351913	2	neutral	AA	100	somatic	0	0.926862425643759	0.9947394328321
4	38295592	38300550	2	neutral	AA	100	somatic	0	0.71107390207716	0.87845456158767
4	40293666	40296145	5	gain	AAABB	5.26373	germline	1	0.0832851247186383	0.270072692886811
4	44966581	45006245	2	neutral	AA	100	somatic	0	0.637023350219605	0.761521086976903
4	49047015	49089158	2	neutral	AA	100	somatic	0	0.646938183974396	0.684142949287393
4	51816058	51823495	2	neutral	AA	100	somatic	0	0.201518970333813	0.611766099285423
4	58876250	58878729	0	loss	-	-1	somatic	0	0.083265122454824	0.270037953989224
4	61072644	61077602	1	loss	A	-1	somatic	0	0.0143427351090005	0.0367357201624712
4	68517081	68621199	1	loss	A	-1	germline	1	2.66623281551399e-18	0
4	78252114	78440518	2	neutral	AA	100	somatic	0	0.17998159593773	0.214850055527432
4	86703025	86958362	2	neutral	AA	62.6533	somatic	0	0.947326923643342	0.607383869833601
4	86980673	87057522	2	neutral	AA	36.3915	somatic	0	0.920420223707193	0.987671538438103
4	91301570	91331318	2	neutral	AA	100	somatic	0	0.76125778580779	0.924419080091753
4	106135906	106143343	1	loss	A	-1	somatic	0	0.00675119156770508	0.00960941813238869
4	110144449	110171718	2	neutral	AA	58.0998	somatic	0	0.378608780186657	0.573400246502312
4	114492615	114497573	2	neutral	AA	100	somatic	0	0.843734903091809	0.904541267756109
4	118268132	118310275	2	neutral	AA	54.5679	somatic	0	0.619858761513644	0.61617758050736
4	119582002	119651414	2	neutral	AA	45.305	somatic	0	0.716669574790146	0.949044829707889
4	129478170	129512876	2	neutral	AA	36.714	somatic	0	0.0554546263245759	0.16529715301698
4	132259608	132262087	0	loss	-	-1	somatic	0	0.0832663346024506	0.2700400592841
4	139309884	139317321	1	loss	A	-1	somatic	0	0.00415481559766595	0.0088611106933858
4	151967658	151992448	2	neutral	AA	71.3397	somatic	0	0.158805865718788	0.357788507916681
4	156987633	157064482	2	neutral	AA	100	somatic	0	0.801518121814915	0.678330066633222
4	161050714	161127563	2	neutral	AA	100	somatic	0	0.157653518524024	0.142404112238867
4	164030472	164037909	2	neutral	AA	100	somatic	0	0.280026001028512	0.181676386619157
4	165081568	165084047	0	loss	-	-1	somatic	0	0.083265122454824	0.270037953989224
4	172503694	172513610	1	loss	A	-1	germline	1	0.0195714858853662	0.0528644642715167
4	172513610	172553274	2	neutral	AA	35.5959	somatic	0	0.0193709257776702	0.0248707279397017
4	181405783	181447926	2	neutral	AA	100	somatic	0	0.124026509877931	0.265433646836919
4	184906131	184933400	2	neutral	AA	100	somatic	0	0.778961790431803	0.475996857921733
4	185518444	185523402	1	loss	A	-1	somatic	0	0.0235606941756604	0.0655599718926413
4	186762902	186790171	2	neutral	AA	100	somatic	0	0.000141204802731237	0.000129663935172442
4	189269171	189279087	1	loss	A	-1	somatic	0	0.00196928639415166	0.0027698217580272
5	0	24790	3	gain	AAB	-1	somatic	0	NA	NA
5	47101	128908	3	gain	AAB	23.769	somatic	0	1.18333878846128e-15	0
5	413993	416472	4	gain	AABB	25.0552	somatic	0	0.0832936117033638	0.270087431586414
5	1767527	1846855	2	neutral	AA	25.12	somatic	0	4.94297864770465e-15	1.91457960596608e-12
5	3321860	3324339	4	gain	AAAA	7.34922	germline	1	0.0832899743384159	0.27008111492898
5	9901126	9925916	1	loss	A	-1	germline	1	2.69018919143799e-07	3.09071959136986e-08
5	26793032	26802948	1	loss	A	-1	somatic	0	0.00156915031563121	0.00168969806817287
5	27440051	27474757	2	neutral	AA	100	somatic	0	0.175751088799104	0.0452503709926634
5	29802538	29886824	2	neutral	AA	36.5253	somatic	0	0.278472642215223	0.32550386128861
5	32348471	32378219	2	neutral	AA	100	somatic	0	0.104633975891032	0.402279451607163
5	32551749	32618682	2	neutral	AA	100	somatic	0	0.663849271462579	0.670404366786096
5	35390204	35414994	2	neutral	AA	100	somatic	0	0.156917827296378	0.096384966805534
5	46322594	46431670	2	neutral	AA	9.53741	somatic	0	0.0239751341490427	0.0104613236444735
5	46431670	50152649	2	neutral	AA	-1	somatic	0	0.0143060695955175	0.0366313406882959
5	50152649	50244372	2	neutral	AA	12.1168	somatic	0	1.01458688534997e-05	0.00030286515544653
5	58025953	58038348	1	loss	A	-1	somatic	0	0.000351577878618125	0.000287459299161852
5	60705752	60708231	0	loss	-	-1	somatic	0	0.0832742139104563	0.270053743992841
5	91202410	91207368	1	loss	A	-1	somatic	0	0.0221387185957884	0.0518705580680583
5	102062909	102100094	2	neutral	AA	100	somatic	0	0.0595298352989534	0.0193775435673217
5	107286162	107320868	2	neutral	AA	100	somatic	0	0.859753928087819	0.560448537376703
5	116046948	116116360	2	neutral	AA	100	somatic	0	0.0407879467243348	0.115155635148896
5	118052459	118057417	1	loss	A	-1	somatic	0	0.02072861929751	0.0481001330166528
5	118538343	118545780	1	loss	A	-1	somatic	0	0.0214214568996461	0.0586939447267125
5	126944632	126974380	2	neutral	AA	100	germline	1	0.705827274338377	0.746308499244091
5	127928795	128216359	2	neutral	AA	26.8394	somatic	0	0.0699086013205054	0.0653710304086059
5	133536293	133580915	2	neutral	AA	54.5692	germline	1	0.198009970104192	0.0815678282990646
5	134674154	134679112	2	neutral	AA	100	somatic	0	0.1520321222906	0.201242619016647
5	137515088	137522525	1	loss	A	-1	somatic	0	0.0071011771903635	0.0150365481471605
5	141060058	141074932	2	neutral	AA	61.8082	somatic	0	0.598524478669357	0.36968337209757
5	156050571	156060487	1	loss	A	-1	somatic	0	0.000687066077098184	0.00081705250701769
5	156776918	156831456	2	neutral	AA	36.3786	somatic	0	0.679265527244799	0.857295399677479
5	171378228	171383186	2	neutral	AA	100	somatic	0	0.0900698138300054	0.164826436845078
5	178584681	178587160	4	gain	AABB	79.9657	somatic	0	0.0832893681234343	0.270080062163225
5	181147967	181182673	3	gain	AAB	3.00392	germline	1	4.33704697665121e-08	4.1385426197138e-09
6	255337	257816	4	gain	-	-1	germline	1	0.0832923992340843	0.270085326021954
6	257816	381766	5	gain	-	-1	germline	1	1.62808556175489e-32	0
6	8336877	8341835	0	loss	-	-1	germline	1	0.0143101819647051	0.0366376767784341
6	32487295	32561665	1	loss	A	-1	germline	1	1.30291011764073e-11	2.23154827949656e-14
6	55960946	55980778	1	loss	A	-1	germline	1	5.18456495142508e-06	1.20797592240152e-06
6	60232263	60239700	3	gain	-	-1	somatic	0	0.00270344801752402	0.00496244659498257
6	76730008	76742403	1	loss	A	-1	somatic	0	0.000707832397564188	0.00113892269046834
6	77617490	77624927	1	loss	A	-1	somatic	0	0.00562318214814116	0.00828638410514637
6	105203802	105221155	3	gain	AAB	2.67484	germline	1	4.66906854652344e-06	1.72811334375744e-06
6	105982208	106016914	2	neutral	AA	93.3801	somatic	0	0.592366895680508	0.345899860423141
6	108096795	108104232	2	neutral	AA	100	somatic	0	0.902671670905088	0.981573077160944
6	109209866	109254488	2	neutral	AA	100	somatic	0	0.585449044710413	0.531343144286092
6	114192656	114197614	2	neutral	AA	100	somatic	0	0.22478178834095	0.286450883519589
6	114733078	114738036	2	neutral	AA	100	somatic	0	0.840929202420616	0.91592869587529
6	121592471	121597429	2	neutral	AA	100	somatic	0	0.784338227663927	0.946130366466415
6	123397183	123417015	2	neutral	AA	100	somatic	0	0.910664119981318	0.594007855815925
6	132961165	133045451	2	neutral	AA	17.5387	somatic	0	0.324798591310472	0.0872007124774214
6	157312382	157314861	9	gain	AAAAAABBB	5.75178	germline	1	0.0832730016699137	0.270051638620094
6	159664953	159667432	0	loss	-	-1	somatic	0	0.083265122454824	0.270037953989224
6	159667432	159721970	2	neutral	AA	27.7892	somatic	0	0.0256604585986213	0.0822038571463597
6	163591689	163596647	2	neutral	AA	100	somatic	0	0.264011084143643	0.548431508850998
6	165309636	165319552	1	loss	A	-1	germline	1	0.0178658197869635	0.0474754489529738
6	165956655	165978966	2	neutral	AA	29.1378	somatic	0	0.0969993946428578	0.116392632054751
6	168713303	168735614	2	neutral	AA	15.6749	somatic	0	0.00972684975092357	0.0515861696328257
6	170143686	170148644	3	gain	AAB	8.18726	somatic	0	0.0143205153048726	0.0366552500439534
6	170567595	170604780	3	gain	-	-1	somatic	0	2.95019408628898e-11	1.76136882856781e-12
7	9762302	9764781	0	loss	-	-1	somatic	0	0.0832669406816243	0.270041111936031
7	19422965	19432881	1	loss	A	-1	somatic	0	0.00127641056289844	0.00156384220645056
7	57485531	57497926	3	gain	-	-1	germline	1	0.000108105283840397	9.13179059965907e-05
7	57929272	57939188	3	gain	-	-1	somatic	0	0.000535038226712153	0.000676995620550014
7	61047854	61057770	3	gain	-	-1	somatic	0	0.000533109057213258	0.000672689165006735
7	62297270	62349329	3	gain	AAB	0.560244	somatic	0	2.51019594308787e-09	1.6057119411883e-08
7	62401388	62406346	5	gain	-	-1	germline	1	0.0143129560117465	0.0366425735048267
7	62438573	62455926	3	gain	AAB	4.09262	germline	1	6.81461552068748e-06	7.29584127967531e-06
7	65487743	65490222	4	gain	AAAB	11.2199	somatic	0	0.0832960366848138	0.270091642751278
7	65730685	65752996	2	neutral	AA	100	somatic	0	0.02289867613349	0.0836495190143596
7	65797618	65822408	3	gain	AAB	0.16289	germline	1	4.38062793571552e-08	4.26281343557378e-09
7	66097577	66114930	2	neutral	AA	79.8386	somatic	0	0.00579078804867779	0.0178447566540104
7	69119478	69216159	2	neutral	AA	27.284	somatic	0	0.0130704578551437	0.00529276362937314
7	69218638	69426874	2	neutral	AA	78.9079	somatic	0	7.58852443637112e-05	2.91955668746402e-05
7	74412143	74417101	1	loss	A	-1	somatic	0	0.0206867576576961	0.0563850989617855
7	75837568	75867316	2	neutral	AA	27.4055	somatic	0	0.00870408749951534	0.0263179678469927
7	87377313	87421935	2	neutral	AA	54.5683	somatic	0	0.00602668591027248	0.0297492795352166
7	90181062	90183541	0	loss	-	-1	somatic	0	0.083265122454824	0.270037953989224
7	96316587	96430621	2	neutral	AA	100	somatic	0	0.498498154111759	0.452779025549226
7	100729207	100739123	1	loss	A	-1	somatic	0	0.000917018221460254	0.00148934740358453
7	100949838	100957275	3	gain	AAB	0.8708	germline	1	0.00270667666711093	0.00497287241105149
7	100957275	100959754	14	gain	AAAAAAAAAAAAAB	8.42321	germline	1	0.0832687589405873	0.270044269909804
7	100959754	100972149	3	gain	AAB	0.621194	germline	1	0.000107834790220047	9.11977635640326e-05
7	101259713	101272108	2	neutral	AA	3.18507	somatic	0	0.0364552124454926	0.0840636269737157
7	102913206	102930559	2	neutral	AA	100	somatic	0	0.214968207002172	0.447227918320451
7	105689686	105721913	2	neutral	AA	27.3772	somatic	0	0.784722789647488	0.735926328682171
7	106691202	106743261	2	neutral	AA	37.35	somatic	0	0.782201502482951	0.844109171273494
7	109802347	109814742	1	loss	A	-1	somatic	0	0.000375564209873615	0.000284108573575304
7	115908124	115915561	2	neutral	AA	100	somatic	0	0.354090132407123	0.67372714892821
7	117008800	117013758	2	neutral	AA	100	germline	1	0.957624601670649	0.952777285520437
7	119110992	119143219	2	neutral	AA	54.5678	somatic	0	0.368144308356711	0.279725432598466
7	119190320	119195278	0	loss	-	-1	somatic	0	0.0143131473428198	0.036646318446653
7	129530229	129621952	2	neutral	AA	100	somatic	0	0.0290892805691987	0.00461236363074291
7	129884726	129946701	2	neutral	AA	100	germline	1	0.308115903204866	0.750640817861083
7	133152048	133157006	2	neutral	AA	100	germline	1	0.95654772027537	0.967850008820296
7	133727176	133739571	2	neutral	AA	100	somatic	0	0.601230287635217	0.51032010584432
7	134099026	134113900	1	loss	A	-1	germline	1	5.97085443557639e-05	4.51404954224799e-05
7	137373785	137517567	2	neutral	AA	40.8702	somatic	0	0.458453629510669	0.715003948230658
7	144134018	144178640	2	neutral	AA	93.5553	somatic	0	0.813253399376675	0.522716663229088
7	149659709	149664667	2	neutral	AA	100	germline	1	0.659113920537032	0.61888685824075
7	152401483	152408920	9	gain	AAAAAAABB	3.90901	germline	1	0.00270074564254216	0.00495911222870904
7	153098082	153142704	2	neutral	AA	45.3432	somatic	0	0.51825924215131	0.737700319713887
7	157240491	157265281	2	neutral	AA	21.9008	germline	1	1.23132588345553e-06	1.16537202476952e-06
7	157483433	157485912	3	gain	-	-1	somatic	0	0.0844267996769143	0.272049737106483
7	157485912	157503265	2	neutral	AA	12.8404	somatic	0	9.93472731875485e-05	0.00065465271503018
8	647019	649498	0	loss	-	-1	germline	1	0.083265122454824	0.270037953989224
8	4263880	4268838	1	loss	A	-1	somatic	0	0.0280910640299763	0.0549147150634937
8	6110735	6115693	1	loss	A	-1	germline	1	0.015188250515269	0.0392741531457048
8	11386047	11391005	1	loss	A	-1	somatic	0	0.0250458130635292	0.0586133871455505
8	18994098	19008972	1	loss	A	-1	germline	1	4.42158699451164e-05	4.4349983854719e-05
8	25114749	25132102	1	loss	A	-1	germline	1	1.38711914035575e-05	6.7198695308246e-06
8	25208951	25213909	0	loss	-	-1	germline	1	0.0143125733563683	0.0366509280655272
8	38072482	38077440	1	loss	A	-1	somatic	0	0.0265983996989196	0.0548631680229907
8	40915895	40923332	1	loss	A	-1	germline	1	0.0147965174890685	0.0378486954504839
8	43236239	43238718	7	gain	-	-1	germline	1	0.0832808814889709	0.270065323757171
8	43238718	43241197	12	gain	-	-1	germline	1	0.0832705772317134	0.270047427910528
8	43241197	43243676	5	gain	-	-1	germline	1	0.0832839123494347	0.270070587406223
8	52460598	52480430	3	gain	AAB	2.5255	germline	1	9.72398653220948e-07	2.3057017206618e-07
8	53529047	54225646	2	neutral	AA	18.2808	somatic	0	0.367136281404544	0.183408770140868
8	54614849	54751194	2	neutral	AA	21.8704	germline	1	0.354440707558071	0.179430846359197
8	57562380	57582212	2	neutral	AA	100	somatic	0	0.0295614640886912	0.0189987544940283
8	69164100	69208722	2	neutral	AA	100	somatic	0	0.585121544501448	0.850918302809562
8	79484177	79499051	2	neutral	AA	100	germline	1	0.37456023579822	0.791999881809762
8	83016752	83058895	2	neutral	AA	100	somatic	0	0.284023626498437	0.526193386386453
8	93059181	93066618	1	loss	A	-1	germline	1	0.0206354737693033	0.056204896821089
8	97318103	97389994	2	neutral	AA	100	somatic	0	0.0576103812877427	0.0151446205356812
8	99274034	99291387	2	neutral	AA	36.5863	somatic	0	0.0607081117356261	0.0197882924204896
8	99343446	99360799	2	neutral	AA	100	somatic	0	0.393980223644532	0.204367923900841
8	108339737	108364527	2	neutral	AA	54.5678	somatic	0	0.10319663357113	0.0116778007567253
8	112618491	112635844	2	neutral	AA	100	somatic	0	0.995817549037847	0.229174873705946
8	113327485	113334922	2	neutral	AA	21.8272	somatic	0	0.909113333448049	0.964977715998131
8	114066227	114068706	1	loss	A	-1	somatic	0	0.0833324182697373	0.2701548159755
8	119140740	119148177	1	loss	A	-1	somatic	0	0.00562942685795238	0.00960738745216883
8	120918183	120923141	1	loss	A	-1	somatic	0	0.0219471741746152	0.0600466446457795
8	122383272	122393188	2	neutral	AA	100	somatic	0	0.344155879730837	0.378037635477165
8	126178621	126183579	1	loss	A	-1	somatic	0	0.0218300187132276	0.0488771957282739
8	127747828	127782534	2	neutral	AA	36.4058	germline	1	0.0905061239477699	0.174201363846459
8	132227381	132254650	2	neutral	AA	100	somatic	0	0.60281177943498	0.419989060485711
8	134242808	134270077	2	neutral	AA	25.5321	somatic	0	0.732364104276179	0.831786884174873
8	136146680	136151638	1	loss	A	-1	somatic	0	0.0250370766182498	0.0596043678396052
8	136362353	136369790	2	neutral	AA	100	somatic	0	0.647838824340704	0.840171187479854
8	142517710	142522668	2	neutral	AA	22.7023	somatic	0	0.676478461026564	0.790913435632678
8	144124102	144126581	5	gain	AAABB	5.43962	germline	1	0.0832851247186383	0.270072692886811
8	144580238	144763684	2	neutral	AA	20.8464	somatic	0	1.8095994517772e-07	7.95783650420212e-07
8	144964483	145071080	3	gain	AAB	2.45669	somatic	0	3.72801824765305e-24	0
8	145071080	145138636	3	gain	AAB	-1	somatic	0	NA	NA
9	8307129	8324482	2	neutral	AA	60.2568	somatic	0	0.207937185447216	0.325745228141542
9	9182216	9207006	2	neutral	AA	100	somatic	0	0.950925250308869	0.999947168093966
9	9467301	9472259	2	neutral	AA	100	somatic	0	0.143929354183334	0.26413178377936
9	15394590	15404506	2	neutral	AA	100	somatic	0	0.0787293156545305	0.122018427657677
9	22496925	22501883	1	loss	A	-1	somatic	0	0.0196051917832864	0.0510152153699622
9	23362096	23376970	1	loss	A	-1	germline	1	4.47834343510054e-05	4.45242837040505e-05
9	29068754	29710815	2	neutral	AA	26.7813	somatic	0	0.00265421669789009	0.000319682304959712
9	33793728	33803644	2	neutral	AA	1.38739	somatic	0	0.00127712717483858	0.00350368044413085
9	40868794	40873752	4	gain	AABB	3.32314	germline	1	0.0143141997040522	0.0366443018979077
9	40910937	40913416	6	gain	-	-1	germline	1	0.0832826999945272	0.270068481937616
9	40913416	40915895	7	gain	AAAAABB	44.9207	germline	1	0.0832808814889709	0.270065323757171
9	40923332	40928290	6	gain	AAAABB	1.5671	germline	1	0.0143112341336101	0.0366394049694295
9	69099646	69121957	2	neutral	AA	54.5678	somatic	0	0.305985624635126	0.0881837310688766
9	69121957	69129394	1	loss	A	-1	germline	1	0.0150959112466266	0.038977342883141
9	69129394	69156663	2	neutral	AA	54.5678	somatic	0	0.559944155639698	0.78550943764553
9	74940170	75088910	2	neutral	AA	100	somatic	0	0.865152991871881	0.867078119314735
9	75388869	75396306	1	loss	A	-1	somatic	0	0.00626386979438983	0.00932034926613079
9	79570942	79625480	2	neutral	AA	54.5678	germline	1	0.851710212061662	0.628288336940429
9	87992105	88011937	2	neutral	AA	100	somatic	0	0.0415992871937712	0.123989684061136
9	103012366	103017324	1	loss	A	-1	somatic	0	0.0209040720746431	0.0565003365005425
9	109794910	109824658	2	neutral	AA	100	somatic	0	0.0310355714318272	0.0721496362483992
9	116641908	116743547	2	neutral	AA	54.5678	germline	1	0.36686855931071	0.343684222884737
9	119894356	119971205	2	neutral	AA	45.094	somatic	0	0.361041385100041	0.277820385054768
9	120804149	121292512	2	neutral	AA	12.9789	somatic	0	0.207825475953044	0.251932967287773
9	128650184	128652663	1	loss	A	-1	somatic	0	0.0833020993886423	0.27010217087311
9	129423632	129443464	3	gain	AAB	0.476439	germline	1	2.21823192956827e-06	5.79365513986296e-06
9	135395543	135417854	2	neutral	AA	18.7507	somatic	0	0.00173829528133904	0.0204193326707901
9	137252314	137262230	2	neutral	AA	27.2878	somatic	0	0.704963255116435	0.892441181086787
9	137326684	137329163	5	gain	AAABB	4.38432	germline	1	0.0832839123494347	0.270070587406223
9	137353953	137356432	3	gain	AAB	40.406	somatic	0	0.0832978554584315	0.270094801156378
9	137358911	137361390	0	loss	-	-1	somatic	0	0.083265122454824	0.270037953989224
10	76849	118992	3	gain	-	-1	somatic	0	6.18969355096203e-12	1.71085368094737e-13
10	24009115	24028947	1	loss	A	-1	somatic	0	5.6184796551076e-06	1.25557681607269e-06
10	38483996	38526139	3	gain	-	-1	somatic	0	1.71154881866256e-11	3.46244144466823e-11
10	38526139	38528618	16	gain	-	-1	germline	1	0.0832681528506927	0.270043217248887
10	38573240	38583156	3	gain	-	-1	germline	1	0.000542309275960467	0.000701443663496448
10	39341730	39361562	1	loss	A	-1	somatic	0	8.18506219855885e-05	4.81686960417393e-05
10	41835604	41843041	2	neutral	AA	3.78092	germline	1	0.00297960375507863	0.00542201308808055
10	41857915	41914932	22	gain	AAAAAAAAAAAAAAABBBBBBB	19.1007	germline	1	2.20951498831299e-05	1.22910334088289e-05
10	42299177	42321488	3	gain	AAA	7.64045	germline	1	3.07597692487592e-06	3.84718164758713e-06
10	46515956	46560578	4	gain	AABB	1.8777	somatic	0	4.28211677411187e-12	2.54241072639161e-14
10	65547239	65554676	1	loss	A	-1	somatic	0	0.00301960151412703	0.00545708351063723
10	67879978	67902289	2	neutral	AA	36.3786	somatic	0	0.709848778798369	0.94950439562212
10	69126915	69131873	2	neutral	AA	54.5678	somatic	0	0.788761453929271	0.888430326021345
10	71427427	71464612	2	neutral	AA	100	germline	1	0.855042185241547	0.866911605867861
10	81727672	81749983	2	neutral	AA	100	somatic	0	0.447237562513972	0.719684246844031
10	86351007	86509663	2	neutral	AA	100	somatic	0	0.0346424797720264	0.0429316510157506
10	93817755	93894604	2	neutral	AA	50.3573	somatic	0	0.0859717053189017	0.0709729128055508
10	99026134	99132731	2	neutral	AA	100	somatic	0	0.250760833759812	0.302170428848673
10	101252276	101272108	2	neutral	AA	54.5678	somatic	0	0.0147429390864167	0.0286240742392669
10	102880979	102935517	2	neutral	AA	23.1641	somatic	0	1.68900194057575e-05	6.49947534847595e-06
10	121582555	121617261	2	neutral	AA	20.635	somatic	0	0.929007141914717	0.61487343194513
10	124230127	124430926	2	neutral	AA	100	somatic	0	0.455417142574425	0.187914235628036
10	127123120	127264423	2	neutral	AA	28.9	somatic	0	0.476576148248329	0.651984044365984
10	128464259	128466738	6	gain	AAAABB	70.6388	germline	1	0.0832808814889709	0.270065323757171
10	130097920	130140063	2	neutral	AA	54.5678	somatic	0	0.154487679860692	0.213941646900395
10	131377084	131387000	2	neutral	AA	13.642	somatic	0	0.650199994774025	0.905084133959282
10	132363726	132366205	5	gain	AAAAB	20.4964	germline	1	0.0832845185322495	0.270071640145019
11	5763675	5788465	1	loss	A	-1	germline	1	2.81693273828175e-07	3.66013790387143e-08
11	10094488	10114320	2	neutral	AA	54.568	somatic	0	0.474029302913186	0.333933314774794
11	18922207	18942039	3	gain	AAB	2.33034	germline	1	9.68209998379344e-07	2.27103444050414e-07
11	28984468	28991905	1	loss	A	-1	germline	1	0.0146028423745003	0.0375204234223395
11	31359350	31371745	2	neutral	AA	54.5695	somatic	0	0.199992506051313	0.201159458363357
11	31371745	31376703	0	loss	-	-1	germline	1	0.0143099906685993	0.036640845183071
11	33233474	33312802	2	neutral	AA	63.783	somatic	0	0.0856791046635745	0.0191416332788069
11	35556297	35583566	2	neutral	AA	100	somatic	0	0.169188204493374	0.62243981282375
11	54756152	54778463	1	loss	A	-1	germline	1	4.75639994529716e-06	1.1674274468243e-06
11	54922245	54934640	1	loss	A	-1	somatic	0	0.000441238523472364	0.000269811423435851
11	55115607	55123044	1	loss	A	-1	somatic	0	0.00618363882511554	0.0093977843769224
11	55189977	55204851	1	loss	A	-1	somatic	0	0.000927966212089866	0.00143902778395955
11	62324539	62331976	2	neutral	AA	13.642	somatic	0	0.632759125602312	0.90686503673346
11	77010135	77032446	2	neutral	AA	55.5724	somatic	0	0.0539434621864404	0.119141867748319
11	89229126	89234084	1	loss	A	-1	somatic	0	0.0222932532535786	0.0571710194161235
11	90567786	90609929	2	neutral	AA	100	somatic	0	0.492943581960695	0.458573459716985
11	91239595	91279259	2	neutral	AA	100	germline	1	0.197870841318774	0.341764959182929
11	96564487	96566966	0	loss	-	-1	germline	1	0.0832784568649312	0.270061112891838
11	99083151	99145126	2	neutral	AA	57.2638	somatic	0	0.873647706196048	0.830946865100082
11	102432280	102439717	1	loss	A	-1	somatic	0	0.00896623458609857	0.0149735923057663
11	104368379	104395648	2	neutral	AA	100	germline	1	0.880882863101161	0.971528708763422
11	104395648	104398127	1	loss	A	-1	germline	1	0.093867673281898	0.28799192888549
11	107913349	107918307	1	loss	A	-1	somatic	0	0.0194724892477661	0.0479539466949563
11	112214414	112549079	2	neutral	AA	41.557	somatic	0	0.00692458811466454	0.069265469078198
11	116312201	116319638	1	loss	A	-1	somatic	0	0.00573720474923325	0.00954038042554739
11	121704026	121723858	2	neutral	AA	36.5176	somatic	0	0.340214150471191	0.378788876135645
11	124170631	124349119	2	neutral	AA	94.9648	somatic	0	0.730421174508823	0.751610223667338
11	132053851	132061288	3	gain	AAB	6.97112	somatic	0	0.00270533242299544	0.00496619289388878
11	134971634	135070794	3	gain	AAB	13.7881	somatic	0	5.70666318351321e-23	0
11	135075752	135086622	3	gain	AAB	-1	somatic	0	NA	NA
12	2253411	2258369	4	gain	-	-1	germline	1	0.0143135300117348	0.0366443018979077
12	33233474	33240911	1	loss	A	-1	somatic	0	0.00456864822839598	0.00749415561861655
12	37616346	37626262	1	loss	A	-1	somatic	0	0.00139817269344992	0.00165554066484219
12	37688237	37742775	2	neutral	AA	10.5217	somatic	0	0.00183426101356345	0.00715713502138537
12	37827061	37829540	3	gain	AAB	76.71	germline	1	0.083308768775703	0.270113752153115
12	37829540	37832019	6	gain	AAAABB	100	germline	1	0.0832808814889709	0.270065323757171
12	37832019	37834498	3	gain	AAB	18.1462	germline	1	0.0832978554584315	0.270094801156378
12	39711101	39713580	0	loss	-	-1	somatic	0	0.0832766384344275	0.270057954774296
12	39713580	39745807	2	neutral	AA	46.9258	somatic	0	0.447866589121198	0.700848669974254
12	42311572	42435522	2	neutral	AA	98.8015	somatic	0	0.856688069621056	0.539350156026645
12	45514440	45516919	1	loss	A	-1	germline	1	0.0833239280821685	0.270140074591968
12	48640459	48662770	2	neutral	AA	36.3788	somatic	0	0.639223295141326	0.803088806622766
12	49118906	49131301	2	neutral	AA	100	germline	1	0.647042884243725	0.545489847996736
12	53811653	53819090	2	neutral	AA	27.2878	somatic	0	0.872488576513047	0.925282678118708
12	58717594	59580286	2	neutral	AA	36.7508	somatic	0	0.000158841290921833	9.69135428555701e-05
12	61092476	61097434	2	neutral	AA	100	somatic	0	0.0351531765464648	0.063180021871215
12	66325645	66414889	2	neutral	AA	36.5206	somatic	0	0.491406346581994	0.233959831897389
12	79761825	79766783	4	gain	-	-1	germline	1	0.0143150607776446	0.0366457422799631
12	79766783	79769262	4	gain	AAAB	96.5803	germline	1	0.0832978554584315	0.270094801156378
12	82384607	82466414	2	neutral	AA	100	germline	1	0.601234740145669	0.179990079981099
12	87367397	87389708	2	neutral	AA	100	somatic	0	0.775659594208693	0.447981499468377
12	93287249	93406241	2	neutral	AA	24.961	somatic	0	0.228605835819664	0.287694930159139
12	114063748	114066227	4	gain	AABB	99.2801	somatic	0	0.0832942179433649	0.270088484373137
12	117269095	117301322	2	neutral	AA	36.3786	somatic	0	0.775771505684782	0.748423112569919
12	123657478	123694663	2	neutral	AA	71.9162	somatic	0	0.0978231409322656	0.0759094526729194
12	125068029	125115130	2	neutral	AA	100	somatic	0	0.797614747023034	0.80910440440917
12	125610930	125717527	2	neutral	AA	13.0067	somatic	0	0.211436309033989	0.138703480400587
12	126632278	126676900	2	neutral	AA	20.7552	somatic	0	0.515975874938319	0.512398005144433
12	131647295	131652253	1	loss	A	-1	somatic	0	0.0290060179045271	0.0559760758617183
12	133149569	133241292	3	gain	AAB	1.72469	somatic	0	3.52678505250202e-24	0
12	133241292	133275309	3	gain	AAB	-1	somatic	0	NA	NA
13	21376417	21378896	4	gain	AAAB	100	germline	1	0.0832869432992491	0.270075851130159
13	22018478	22023436	1	loss	A	-1	germline	1	0.0168191804572286	0.0442902557453018
13	24351217	24442940	2	neutral	AA	6.86514	somatic	0	0.812569619818337	0.634461210276499
13	24812311	24817269	2	neutral	AA	54.5678	somatic	0	0.240428326182644	0.716301428662107
13	35997559	36004996	2	neutral	AA	100	somatic	0	0.705953820171342	0.922371990345621
13	37497354	37512228	1	loss	A	-1	germline	1	9.58954970658459e-05	4.54440531462152e-05
13	38481517	38486475	1	loss	A	-1	germline	1	0.0199845726404646	0.0541628553097231
13	45482213	45541709	2	neutral	AA	73.5357	somatic	0	0.882246449644596	0.96918610528344
13	46030072	46039988	2	neutral	AA	100	somatic	0	0.0610064258974923	0.259987959732709
13	48092600	48127306	2	neutral	AA	100	somatic	0	0.445860242887106	0.260064236917562
13	48957771	48962729	1	loss	A	-1	somatic	0	0.0224877754597141	0.0567314190345505
13	50494751	50502188	1	loss	A	-1	germline	1	0.0196024808385639	0.0529603883986436
13	55789895	55824601	2	neutral	AA	54.8597	somatic	0	0.251883493373158	0.265371256782345
13	56362544	56382376	2	neutral	AA	54.5679	somatic	0	0.0641339322710386	0.0402275870821173
13	57178135	57215320	1	loss	A	-1	germline	1	1.33902978480076e-10	4.11404244005098e-12
13	63028575	63043449	3	gain	AAB	0.778063	germline	1	0.000108074897335553	9.14993004335063e-05
13	63055844	63065760	3	gain	AAB	0.498588	germline	1	0.000553163422564885	0.000735843259616065
13	63065760	63068239	5	gain	AAABB	0.565959	germline	1	0.0832845185322495	0.270071640145019
13	63650804	63663199	1	loss	A	-1	germline	1	0.000172542514452941	0.000139266721605469
13	68670779	68693090	1	loss	A	-1	germline	1	4.16167804824314e-07	8.44061797122819e-08
13	81420276	83415871	2	neutral	AA	100	germline	1	0.23858841269326	0.00717015793155318
13	89923246	89985221	2	neutral	AA	42.4626	somatic	0	0.0827006162716326	0.113455521926979
13	98602225	98607183	1	loss	A	-1	somatic	0	0.0184609475121683	0.0488309480315364
13	104638590	104715439	2	neutral	AA	100	somatic	0	0.421043096980854	0.87751956929638
13	106274730	106368932	2	neutral	AA	100	somatic	0	0.251444386213227	0.187959254229882
13	108292636	108300073	1	loss	A	-1	somatic	0	0.00774241659587275	0.0109819850015886
13	109021462	109023941	1	loss	A	-1	somatic	0	0.0833330247385197	0.270155868953933
13	110828653	110855922	2	neutral	AA	100	somatic	0	0.000640116225587612	0.000531680083716624
13	113260552	113263031	3	gain	AAB	100	somatic	0	0.0832978554584315	0.270094801156378
13	114152992	114157950	1	loss	A	-1	somatic	0	0.0300051743541127	0.0575952059603078
13	114172824	114175303	3	gain	-	-1	somatic	0	0.0840395502533211	0.271380397983465
13	114175303	114331480	3	gain	AAB	10.3174	somatic	0	6.27576257400376e-36	0
13	114331480	114341396	3	gain	-	-1	somatic	0	0.0050312545622555	0.014469741707651
13	114341396	114364328	3	gain	AAB	-1	somatic	0	NA	NA
14	16093668	16096147	5	gain	-	-1	germline	1	0.0832845185322495	0.270071640145019
14	20236077	20238556	1	loss	A	-1	somatic	0	0.0834307128459635	0.270325437547563
14	21483014	21487972	1	loss	A	-1	somatic	0	0.0211247191965914	0.0543796031117417
14	30434683	30442120	2	neutral	AA	100	somatic	0	0.245361677021381	0.219628199264981
14	31825402	31832839	2	neutral	AA	21.8271	somatic	0	0.728619083433536	0.968777938983507
14	34346545	34351503	1	loss	A	-1	somatic	0	0.022107125617953	0.0565880523754396
14	34507680	34601882	2	neutral	AA	54.5678	somatic	0	0.00225073334891276	0.00495840745388598
14	44460865	44465823	2	neutral	AA	100	germline	1	0.516624158303024	0.908384517559949
14	46964655	46972092	2	neutral	AA	100	somatic	0	0.294465543057945	0.348014241622592
14	49019746	49024704	1	loss	A	-1	somatic	0	0.0202895181565294	0.0549663037847069
14	52222614	52267236	2	neutral	AA	24.9834	somatic	0	0.176688677867473	0.0518860907340052
14	59748858	59751337	1	loss	A	-1	somatic	0	0.0833675993692941	0.270215893676275
14	60011632	60095918	2	neutral	AA	54.5792	germline	1	0.707953688708124	0.730709630649504
14	60708231	60956131	2	neutral	AA	51.8827	somatic	0	0.114610650493676	0.26338853380495
14	72798314	72805751	2	neutral	AA	32.149	germline	1	0.8731488982908	0.955425663536592
14	73698191	73779998	2	neutral	AA	51.153	somatic	0	0.294440400296663	0.235141776068985
14	76764714	76779588	2	neutral	AA	100	somatic	0	0.263176120505088	0.593088546114906
14	77017572	77034925	2	neutral	AA	36.3921	germline	1	0.00104207030391344	0.000632371640004958
14	79640354	79650270	1	loss	A	-1	somatic	0	0.00159993208536504	0.00178122910913492
14	81849143	81854101	2	neutral	AA	70.8255	somatic	0	0.799638899377437	0.693889139680513
14	82032589	82037547	1	loss	A	-1	somatic	0	0.0213336109771245	0.0543248394029092
14	82674650	82677129	1	loss	A	-1	somatic	0	0.0833245345009	0.270141127528463
14	83943898	84043058	2	neutral	AA	58.5303	somatic	0	0.143741252381829	0.0640734312158324
14	92610482	92642709	2	neutral	AA	27.2949	somatic	0	0.127370775103633	0.190088001447571
14	94395362	94400320	2	neutral	AA	100	somatic	0	0.0630377173901764	0.110773825672314
14	99926011	99928490	7	gain	AAAAABB	27.3464	germline	1	0.0832808814889709	0.270065323757171
14	101723286	101725765	1	loss	A	-1	somatic	0	0.0833142258686478	0.270123228015422
14	104353505	104375816	2	neutral	AA	36.384	somatic	0	0.000119981386226061	0.00136406756276586
15	0	17080310	3	gain	-	-1	somatic	0	NA	NA
15	17080310	17082789	18	gain	-	-1	germline	1	0.0832681528506927	0.270043217248887
15	17082789	20379859	3	gain	-	-1	somatic	0	0.00115793184221007	0.000765192461165576
15	20379859	20382338	1	loss	A	-1	germline	1	0.0842782755533986	0.271793702578419
15	20382338	20672381	3	gain	-	-1	germline	1	2.00716970958324e-11	1.9773072068574e-13
15	24871807	24874286	1	loss	A	-1	somatic	0	0.0832936117033638	0.270087431586406
15	25387439	25412229	2	neutral	AA	100	somatic	0	0.124445259333534	0.0254638837931934
15	26745931	26755847	2	neutral	AA	100	germline	1	0.0933675690875996	0.173193272366301
15	27524337	27526816	2	neutral	AA	100	somatic	0	0.355106330337648	0.598750860889694
15	33925115	33932552	2	neutral	AA	100	somatic	0	0.819531238626271	0.941914049223891
15	35519112	35521591	2	neutral	AA	100	germline	1	0.15418112632001	0.377294213862535
15	38211306	38238575	2	neutral	AA	54.5873	somatic	0	0.40427504245237	0.450356562158789
15	40501902	40516776	2	neutral	AA	100	somatic	0	0.216089065757591	0.325949631845067
15	40848962	40851441	2	neutral	AA	100	somatic	0	0.278530936331571	0.523440151166386
15	42576825	42591699	2	neutral	AA	100	somatic	0	0.685580173021551	0.970657508523532
15	47938902	47990961	2	neutral	AA	36.3786	somatic	0	0.54186548478365	0.285986439449251
15	49252772	49255251	1	loss	A	-1	somatic	0	0.0861399718371193	0.274996095434239
15	51900344	51902823	2	neutral	AA	100	somatic	0	0.777566377070183	0.887765510288658
15	52225093	52227572	2	neutral	AA	100	somatic	0	0.205679562411606	0.442376825323984
15	53734804	53737283	2	neutral	AA	100	germline	1	0.871482808198926	0.926111392828791
15	54071948	54091780	2	neutral	AA	100	germline	1	0.0882438483833146	0.23217381085491
15	55405650	55425482	2	neutral	AA	58.0841	somatic	0	0.147678421103441	0.184861335103896
15	57391329	57418598	2	neutral	AA	19.1044	somatic	0	0.130641569659745	0.182346072654797
15	58633308	58700241	2	neutral	AA	100	germline	1	0.804376507728216	0.598375987906816
15	61816344	61818823	2	neutral	AA	100	somatic	0	0.599361401561469	0.789470917460693
15	62626977	62631935	2	neutral	AA	100	somatic	0	0.142145507942996	0.194300882442252
15	68323719	68440232	2	neutral	AA	33.6069	germline	1	0.507569925713978	0.311169988874187
15	68844309	68846788	2	neutral	AA	100	somatic	0	0.827220927440367	0.909209053543201
15	71415032	71422469	1	loss	A	-1	somatic	0	0.00697633171045299	0.0104602864829364
15	72882600	72885079	2	neutral	AA	100	somatic	0	0.406003988371474	0.644252870990485
15	76591184	76593663	1	loss	A	-1	germline	1	0.083303311972301	0.270104276533423
15	76620932	76633327	2	neutral	AA	100	somatic	0	0.157930486811901	0.425013431268084
15	78500014	78507451	2	neutral	AA	100	germline	1	0.869276493268868	0.932592235980884
15	78916486	78921444	1	loss	A	-1	somatic	0	0.0281884671382158	0.0561264488029065
15	78921444	78946234	2	neutral	AA	48.5757	somatic	0	0.137054750718108	0.175121731829174
15	79385017	79389975	2	neutral	AA	100	somatic	0	0.27052645583607	0.336175051243255
15	79992372	80002288	2	neutral	AA	54.5678	somatic	0	0.0908685392804169	0.0992704564891027
15	80503046	80505525	2	neutral	AA	100	germline	1	0.320122679511279	0.565450839481771
15	83839780	83872007	2	neutral	AA	54.5678	germline	1	0.606095726117891	0.742585866198323
15	85810585	85842812	2	neutral	AA	54.5681	germline	1	0.361381429726441	0.705043483841388
15	89077907	89353076	2	neutral	AA	71.8603	somatic	0	0.00375348300661971	0.011350465081436
15	91856866	91861824	2	neutral	AA	54.5678	somatic	0	0.905507327941917	0.875159882920636
15	93336829	93339308	2	neutral	AA	54.5678	germline	1	0.734248839806909	0.866951547781532
15	93458300	93473174	2	neutral	AA	51.4888	somatic	0	0.740876569910057	0.749701171546939
15	99031092	99033571	1	loss	A	-1	somatic	0	0.0914972422409948	0.284056834083988
15	99876431	99881389	1	loss	A	-1	somatic	0	0.0265001861673973	0.0541648775406289
15	101138242	101140721	3	gain	-	-1	somatic	0	0.0835284936838538	0.270495083795717
15	101487781	101492739	2	neutral	AA	36.3839	somatic	0	0.877750240784332	0.704218455842284
16	845339	847818	5	gain	AAABB	5.36732	germline	1	0.0832863371021381	0.270074798379381
16	1023827	1026306	5	gain	AAABB	7.04694	germline	1	0.0832863371021381	0.270074798379381
16	2290596	2315386	2	neutral	AA	54.5678	somatic	0	0.196469536995657	0.473336117115922
16	6433005	6519770	2	neutral	AA	13.6602	somatic	0	0.0987522195982925	0.0361379646189508
16	12057856	12062814	2	neutral	AA	37.9702	somatic	0	0.066071474795358	0.106128962579962
16	21557384	21582174	4	gain	AABB	2.65475	germline	1	4.33354077000369e-08	4.1320410426593e-09
16	21582174	22425034	2	neutral	AA	47.1816	somatic	0	0.0100066396724368	0.00809222321561642
16	22613438	22700203	4	gain	AABB	1.08017	germline	1	2.55218005730002e-23	0
16	23736425	23984325	2	neutral	AA	37.1797	somatic	0	1.21558496267143e-05	0.000134386955665811
16	28602702	28605181	4	gain	AAAB	40.9821	somatic	0	0.0832923992340843	0.270085326021954
16	34061460	34066418	15	gain	AAAAAAAAABBBBBB	13.3754	germline	1	0.0143071214976943	0.0366330686177924
16	34068897	34083771	2	neutral	AA	14.921	somatic	0	0.00527871163417527	0.00555907362525043
16	34083771	34086250	12	gain	AAAAAAABBBBB	31.2512	germline	1	0.0832693650340556	0.270045322573717
16	34096166	34098645	11	gain	AAAAAAAABBB	14.4438	germline	1	0.0832711833359029	0.270048480583427
16	34210200	34212679	4	gain	AAAB	2.42986	somatic	0	0.0832942179433649	0.270088484373137
16	34247385	34958858	2	neutral	AA	0.495938	somatic	0	8.58234219254345e-23	0
16	35231548	35524070	4	gain	AAAB	100	germline	1	1.0079762062353e-73	0
16	35992601	36123988	2	neutral	AA	2.26	germline	1	0.293701653174426	0.201285615391641
16	36123988	36126467	5	gain	-	-1	germline	1	0.0832839123494347	0.270070587406223
16	57292169	57294648	0	loss	-	-1	somatic	0	0.0832693650340556	0.270045322573709
16	59667051	59686883	2	neutral	AA	100	germline	1	0.239518592509099	0.490040992089144
16	65321650	65324129	1	loss	A	-1	somatic	0	0.0833190768610133	0.270131651207839
16	75517777	75532651	2	neutral	AA	54.5678	somatic	0	0.816834506050786	0.920350142625812
16	78336400	78351274	1	loss	A	-1	germline	1	6.78332299442695e-05	4.45351990997489e-05
16	80941829	80951745	1	loss	A	-1	somatic	0	0.00163289488403532	0.00161959808381285
16	87466557	87605381	2	neutral	AA	13.3086	somatic	0	0.0458963304552518	0.0148868121059925
17	2268285	2285638	2	neutral	AA	100	somatic	0	0.579029302033603	0.914244709268021
17	10215959	10220917	2	neutral	AA	100	germline	1	0.277154398681504	0.483269021276764
17	11993402	12000839	2	neutral	AA	54.5678	somatic	0	0.298020527073735	0.561181355210043
17	14569083	14578999	2	neutral	AA	100	somatic	0	0.394323510726594	0.370272887643372
17	17618253	17724850	2	neutral	AA	45.8146	germline	1	0.663780658341604	0.607842105603665
17	17881027	17908296	2	neutral	AA	54.5704	somatic	0	0.712420931349667	0.716845981682821
17	21289652	21304526	4	gain	AABB	0.239628	germline	1	2.21288454102956e-05	1.23052456634243e-05
17	21852385	21859822	4	gain	-	-1	germline	1	0.00270200063216888	0.00496034044043192
17	21859822	21884612	3	gain	-	-1	somatic	0	1.94175852137523e-07	2.87067942306152e-07
17	21884612	21968898	1	loss	A	-1	germline	1	2.40593085388452e-10	1.64313007644523e-14
17	21976335	21978814	23	gain	-	-1	germline	1	0.0832669406816243	0.270041111936039
17	22122596	22127554	5	gain	-	-1	germline	1	0.0143128603470559	0.0366417093350342
17	22127554	22154823	5	gain	AAABB	0.525164	germline	1	9.23617200286496e-09	5.58823098906203e-10
17	22157302	22159781	4	gain	AABB	2.48182	germline	1	0.0832893681234343	0.270080062163225
17	22710119	22717556	2	neutral	AA	26.4931	somatic	0	0.0298512105551783	0.037810546105374
17	26783116	26805427	3	gain	-	-1	somatic	0	2.15197475124674e-07	3.8058096452076e-08
17	26807906	26815343	4	gain	-	-1	somatic	0	0.01431343434366	0.0366440138274409
17	26815343	26864923	3	gain	-	-1	somatic	0	3.36648081661092e-14	3.44169137633799e-15
17	26864923	26867402	8	gain	-	-1	germline	1	0.0832790630155803	0.270062165603684
17	26867402	26877318	3	gain	-	-1	somatic	0	0.00086914319888324	0.00219150596500139
17	26877318	26879797	5	gain	-	-1	germline	1	0.0832845185322495	0.270071640145019
17	26936814	26939293	13	gain	AAAAAAAABBBBB	59.3892	germline	1	0.0832687589405873	0.270044269909804
17	31413888	31458510	2	neutral	AA	100	somatic	0	0.337198531249932	0.579344590410052
17	32276580	32316244	2	neutral	AA	72.817	somatic	0	0.490281747278738	0.596625211827746
17	34361419	34366377	2	neutral	AA	100	somatic	0	0.682619208503186	0.915316058850757
17	41139005	41176190	2	neutral	AA	28.2149	germline	1	0.00653309334990328	0.0155616700781515
17	42936280	42978423	2	neutral	AA	22.8653	somatic	0	0.000116173822993612	0.000941103263595089
17	49946892	49974161	2	neutral	AA	54.5678	somatic	0	0.0363321546805711	0.136791022172816
17	56082417	56094812	1	loss	A	-1	germline	1	0.000277624634088972	0.000260747476705125
17	58496963	58519274	2	neutral	AA	100	germline	1	0.0583496536086632	0.159896366571933
17	65403457	65440642	2	neutral	AA	100	somatic	0	0.851031347032333	0.677741291302895
17	65772828	65837282	2	neutral	AA	36.3786	germline	1	0.0133833639579077	0.0151245651199736
17	74776556	74791430	2	neutral	AA	54.5777	germline	1	0.161537782565294	0.255499719968144
17	79370143	79397412	3	gain	AAB	1.4291	germline	1	9.29686520152425e-09	5.63919799745349e-10
17	79585816	79618043	2	neutral	AA	100	somatic	0	0.373908640742036	0.143910889551914
17	81221956	81229393	2	neutral	AA	54.5678	germline	1	0.882915927467558	0.884999232279023
17	82585406	82587885	5	gain	AAABB	22.1191	germline	1	0.0832839123494347	0.270070587406223
18	29594302	29596781	1	loss	A	-1	somatic	0	0.0835910977924613	0.270603655980904
18	33768938	33771417	1	loss	A	-1	somatic	0	0.0850297960976793	0.273089428230505
18	47743061	47849658	2	neutral	AA	100	somatic	0	0.0244379430651396	0.0833672867850954
18	50167523	50172481	1	loss	A	-1	somatic	0	0.0285625512384136	0.0577912034653792
18	50854206	51141770	2	neutral	AA	14.0161	somatic	0	0.207350150485941	0.203243155151502
18	53677787	53685224	1	loss	A	-1	somatic	0	0.00732701954909399	0.0108116716138792
18	54659471	54674345	2	neutral	AA	100	germline	1	0.0446430458618561	0.233435244854408
18	56260905	56263384	1	loss	A	-1	somatic	0	0.0867788360236651	0.276087809462667
18	57024437	57026916	4	gain	AABB	34.8286	germline	1	0.0832893681234343	0.270080062163225
18	57279774	57282253	1	loss	A	-1	germline	1	0.0832960366848138	0.27009164275127
18	66055434	66065350	1	loss	A	-1	germline	1	0.00157440879259891	0.00160832025987445
18	73542014	73574241	2	neutral	AA	45.6918	germline	1	0.0378908157009863	0.15509996052859
18	74783993	74791430	2	neutral	AA	54.5678	germline	1	0.0375403609976875	0.0595577363056956
18	79518883	79523841	1	loss	A	100	somatic	0	0.0306758211189997	0.0588227739524936
18	80118801	80260104	3	gain	AAB	1.37408	somatic	0	1.60309449971742e-34	0
18	80260104	80373285	3	gain	AAB	-1	somatic	0	NA	NA
19	4350645	4420057	2	neutral	AA	100	somatic	0	0.00012725004532008	0.000246281117020075
19	7449395	7451874	9	gain	AAAAAABBB	7.60518	germline	1	0.0832748200360884	0.27005479668372
19	8887215	8921921	2	neutral	AA	1.72281	somatic	0	0.523527193177481	0.706096485511839
19	11713275	11842183	2	neutral	AA	100	germline	1	0.000421098913854381	5.44461611897695e-05
19	17035688	17127411	2	neutral	AA	36.3786	germline	1	6.91733242346353e-06	4.72797806017056e-06
19	24331385	24368570	4	gain	AABB	0.438855	germline	1	1.97868530361887e-11	1.87738713464114e-13
19	24368570	24405755	5	gain	AAABB	0.592855	germline	1	1.97815507971249e-09	7.56417151137612e-11
19	24415671	24420629	4	gain	AAAA	2.11989	germline	1	0.0143143910497908	0.0366454541995891
19	27244210	27323538	2	neutral	AA	1.87307	germline	1	1.31010773307014e-05	0.000668028063496862
19	27330975	27338412	2	neutral	AA	10.083	germline	1	0.648446467524725	0.854851907797063
19	27338412	27340891	5	gain	AAABB	1.8595	germline	1	0.0832839123494347	0.270070587406223
19	27345849	27370639	6	gain	AAAABB	0.173529	germline	1	4.32829977295346e-08	4.12814482597668e-09
19	27375597	27380555	5	gain	AAABB	0.889505	germline	1	0.0143125733563683	0.0366417093350342
19	27380555	27383034	3	gain	AAB	7.10665	germline	1	0.0833873181751868	0.270250649279812
19	27383034	27397908	6	gain	AAAABB	0.299406	germline	1	2.21150051539475e-05	1.22985726450642e-05
19	27397908	27407824	4	gain	AABB	14.9676	germline	1	0.000532508996335577	0.000671368465062439
19	34391167	34393646	5	gain	AAABB	1.76295	germline	1	0.0832839123494347	0.270070587406223
19	46270535	46359779	2	neutral	AA	38.7621	somatic	0	0.00658719809238464	0.00591328807304425
19	51630133	51645007	1	loss	A	-1	germline	1	5.8412999078922e-05	4.27749401538113e-05
19	53015894	53048121	3	gain	AAB	1.85938	germline	1	1.99465813630136e-09	7.69804220368542e-11
20	64454	66933	8	gain	-	-1	germline	1	0.0832754261652943	0.270055849377586
20	66933	86765	3	gain	-	-1	somatic	0	1.69299892199161e-06	1.01852985301409e-06
20	1611350	1613829	0	loss	-	-1	germline	1	0.0832772445743549	0.270059007477148
20	3839971	3844929	1	loss	A	-1	somatic	0	0.0244835575804164	0.0540682876075226
20	9060745	9100409	2	neutral	AA	44.7702	somatic	0	0.56299128432399	0.482022010869574
20	20000572	20065026	2	neutral	AA	21.9317	somatic	0	0.288293926317343	0.32689421841435
20	20250951	20273262	2	neutral	AA	36.384	somatic	0	0.608692577204635	0.791599360569536
20	24755294	24767689	2	neutral	AA	100	somatic	0	0.248374855914788	0.164812537370061
20	25221346	26339375	2	neutral	AA	0.859929	somatic	0	0.00616766631196503	0.0422198199031979
20	28801022	28838207	9	gain	-	-1	somatic	0	1.00066946367864e-07	1.84510114853431e-07
20	29254679	29366234	3	gain	-	-1	somatic	0	5.00481219434312e-14	1.11022302462516e-16
20	29408377	29410856	6	gain	-	-1	germline	1	0.0832826999945272	0.270068481937616
20	29891782	29894261	6	gain	-	-1	germline	1	0.0832808814889709	0.270065323757171
20	30149598	30152077	3	gain	-	-1	somatic	0	0.0833099814380015	0.270115857879328
20	30940399	30942878	6	gain	-	-1	germline	1	0.0832808814889709	0.270065323757171
20	31066828	31074265	41	gain	-	-1	germline	1	0.0143066433518835	0.03663220464413
20	31170946	31178383	1	loss	A	-1	germline	1	0.00461978023269631	0.00945608500538453
20	31180862	31190778	12	gain	-	-1	germline	1	0.000536939943660194	0.000685944624368662
20	31225484	31240358	3	gain	AAA	6.79806	somatic	0	2.33396276944552e-05	1.41154090571582e-05
20	31240358	31242837	53	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBB	64.8444	germline	1	0.0832663346024506	0.270040059284108
20	31242837	31245316	3	gain	AAA	71.4791	germline	1	0.0833718461775458	0.270223265804427
20	36619788	36622267	1	loss	A	-1	somatic	0	0.126045436930837	0.337868895441172
20	36622267	36642099	2	neutral	AA	54.5789	somatic	0	0.0831376118478842	0.242435297498509
20	43642795	43645274	0	loss	-	-1	somatic	0	0.0832663346024506	0.2700400592841
20	43851031	43855989	1	loss	A	-1	germline	1	0.0170421452029221	0.0449716966307283
20	43868384	43880779	2	neutral	AA	100	somatic	0	0.318995558289601	0.644924533233403
20	44634395	44669101	2	neutral	AA	100	somatic	0	0.551563038793994	0.337510423593976
20	44738513	45013682	2	neutral	AA	14.9954	somatic	0	0.521099731808418	0.197727734700123
20	49929539	49969203	2	neutral	AA	34.2329	somatic	0	1.34237452096918e-07	4.04234790085667e-09
20	50665802	50700508	2	neutral	AA	100	somatic	0	0.000254648299663081	0.000114798410384198
20	51927613	51940008	2	neutral	AA	54.5681	germline	1	0.241270062914541	0.282190892134086
20	56193972	56201409	2	neutral	AA	54.5678	somatic	0	0.79370272984651	0.982973367693203
20	57492968	57500405	2	neutral	AA	36.3789	somatic	0	0.773987976245953	0.971366194508959
20	58695283	58881208	2	neutral	AA	94.6453	somatic	0	0.00539310681104527	0.0366743121191203
20	61325502	61392435	2	neutral	AA	6.07263	germline	1	0.000176190088054195	0.000108112122249371
20	62064244	62066723	1	loss	A	-1	somatic	0	0.083296642939112	0.270092695549975
20	63692947	63715258	2	neutral	AA	7.95905	somatic	0	0.00688041738761036	0.015669777099935
21	8988854	8996291	9	gain	AAAAAABBB	0.749692	germline	1	0.00270072821588152	0.00495870288675415
21	10652263	10691927	6	gain	AAAABB	8.20915	somatic	0	1.97610146216359e-11	1.87627691161651e-13
21	10691927	10694406	54	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	32.5272	germline	1	0.0832663346024506	0.270040059284108
21	10694406	10704322	5	gain	AAAAB	5.04566	germline	1	0.000532451720087101	0.000671284023086582
21	10704322	10739028	6	gain	AAAAAB	2.60068	somatic	0	9.15065417305148e-11	1.38589140163958e-12
21	14088157	14090636	1	loss	A	-1	somatic	0	0.0865559723759146	0.275708238066326
21	17952918	17957876	1	loss	A	-1	germline	1	0.0174529959942577	0.0453466780650734
21	20585616	20590574	1	loss	A	-1	somatic	0	0.0221804589830168	0.057310134364409
21	21135954	21148349	2	neutral	AA	48.278	somatic	0	0.791796856261793	0.934778460487268
21	36632183	36649536	2	neutral	AA	48.206	somatic	0	0.107625821065818	0.247790598486953
21	37365967	37368446	1	loss	A	-1	somatic	0	0.121041102146315	0.330492840242004
21	41473670	41476149	1	loss	A	-1	germline	1	0.0835935297862435	0.270607873017638
21	42314051	42321488	2	neutral	AA	100	somatic	0	0.0864770898755811	0.305829265430725
21	43335399	43337878	4	gain	AAAA	3.98094	somatic	0	0.0832942179433649	0.270088484373137
21	46548183	46677091	3	gain	AAB	1.59646	somatic	0	4.16528614550974e-32	0
21	46679570	46709983	3	gain	AAB	-1	somatic	0	NA	NA
22	11619073	11628989	4	gain	AABB	30.2759	germline	1	0.0143145823977858	0.0366448780447856
22	17876069	17878548	4	gain	AAAA	7.71084	germline	1	0.0832923992340843	0.270085326021954
22	18731324	18733803	8	gain	AAAAABBB	37.0819	germline	1	0.0832778507178561	0.270060060183003
22	29118334	29120813	4	gain	AAAB	81.6106	germline	1	0.0832869432992491	0.270075851130159
22	36746217	36748696	1	loss	A	-1	germline	1	0.0832996742642183	0.270097959588429
22	50735214	50740172	3	gain	-	-1	somatic	0	0.0145821638315536	0.0372764402410937
X	49138738	49146175	2	gain	AB	1.50283	somatic	0	0.00816009831043484	0.0107320200127934
X	58519274	58524232	0	loss	-	-1	somatic	0	0.0143080778316059	0.0366373887535358
X	70916753	70921711	0	loss	-	-1	somatic	0	0.0143099906685993	0.0366431496279261
X	78266988	78271946	2	gain	-	-1	somatic	0	0.0793747679502222	0.149890534303489
X	104259303	104308883	2	gain	-	-1	germline	1	0.0610504740428995	0.0913920354413457
X	126776060	126781018	0	loss	-	-1	somatic	0	0.0143140083605698	0.0366491993990028
X	129364136	129369094	0	loss	-	-1	somatic	0	0.014343597696565	0.0367435157890861
X	155559729	155562208	0	loss	-	-1	germline	1	0.0832675467643717	0.270042164590958
Y	10622515	10657221	2	gain	AB	3.54652	somatic	0	0.19870677911639	0.363294709839102
Y	10659700	10679532	3	gain	-	-1	germline	1	0.00298853721619638	0.00587077294990002
Y	10746465	10748944	5	gain	-	-1	germline	1	0.0832845185322495	0.270071640145019
Y	10748944	10753902	2	gain	-	-1	germline	1	0.0151415413704322	0.0386468676206211
Y	10753902	10756381	5	gain	-	-1	germline	1	0.0832851247186383	0.270072692886811
Y	10756381	10758860	2	gain	-	-1	germline	1	0.917743462221658	0.941647123614203
Y	10758860	10761339	8	gain	-	-1	germline	1	0.0832778507178561	0.270060060183003
Y	10761339	10763818	4	gain	-	-1	germline	1	0.0832887619120268	0.270079009400466
Y	10763818	10768776	2	gain	-	-1	germline	1	0.0182147435140579	0.0477732971302788
Y	10768776	10778692	4	gain	-	-1	germline	1	0.000543525451681061	0.000706010913820942
Y	10778692	10788608	2	gain	-	-1	germline	1	0.635859173136477	0.277563154435085
Y	10788608	10791087	4	gain	-	-1	germline	1	0.0832923992340843	0.270085326021954
Y	10791087	10796045	2	gain	-	-1	germline	1	0.0233747320937862	0.0634060793694149
Y	10796045	10798524	6	gain	-	-1	germline	1	0.0832808814889709	0.270065323757171
Y	10798524	10803482	4	gain	-	-1	germline	1	0.0143170701270531	0.0366509280655294
Y	10803482	10820835	2	gain	-	-1	germline	1	0.252866944234101	0.294181854660151
Y	10820835	10825793	3	gain	-	-1	germline	1	0.0143196539418663	0.0366592842927879
Y	10825793	10887768	2	gain	-	-1	germline	1	0.0209040589111067	0.000514184577688259
Y	10887768	10895205	3	gain	-	-1	germline	1	0.0169256557605938	0.0445973587907099
Y	10924953	10927432	5	gain	-	-1	germline	1	0.0832845185322495	0.270071640145019
Y	10927432	10934869	2	gain	-	-1	germline	1	0.476713504694787	0.573543845457855
Y	10934869	10939827	4	gain	-	-1	germline	1	0.0143176442725793	0.0366526568033928
Y	10939827	10981970	2	gain	-	-1	germline	1	0.8415525820235	0.535160063228138
Y	10981970	10986928	3	gain	-	-1	germline	1	0.0143199410577903	0.0366526568033928
Y	10986928	10989407	13	gain	-	-1	germline	1	0.0832687589405873	0.270044269909804
Y	10989407	10999323	2	gain	-	-1	germline	1	0.708612461484917	0.272383794438542
Y	10999323	11001802	8	gain	-	-1	germline	1	0.0832790630155803	0.270062165603684
Y	11004281	11011718	2	gain	-	-1	germline	1	0.114548411280363	0.229619725792541
Y	11014197	11016676	16	gain	-	-1	germline	1	0.0832681528506927	0.270043217248887
Y	11016676	11041466	2	gain	AA	4.18212	germline	1	0.475163915817372	0.321387551188476
Y	11291845	11306719	30	gain	AAAAAAAAAAAAAAAAAAAABBBBBBBBBB	5.90634	germline	1	2.20944655213403e-05	1.22901637821249e-05
Y	11306719	11309198	5	gain	AAABB	1.5995	germline	1	0.0832869432992491	0.270075851130159
Y	11314156	11333988	7	gain	AAAAABB	1.52627	germline	1	0.000532290029900396	0.000671220698139074
Y	11524871	11529829	2	gain	AA	36.9037	germline	1	0.726360240155871	0.818155636001578
Y	11529829	11532308	17	gain	AAAAAAAAAAAAAAAAB	3.22604	germline	1	0.0832681528506927	0.270043217248887
Y	11686006	11688485	3	gain	AAA	100	germline	1	0.0833384831184451	0.270165345894636
Y	11688485	11690964	7	gain	AAAAABB	100	germline	1	0.0832808814889709	0.270065323757171
Y	11715754	11718233	4	gain	AAAA	7.92548	germline	1	0.0832923992340843	0.270085326021954
Y	11720712	11725670	22	gain	AAAAAAAAAAAAAAABBBBBBB	21.2865	germline	1	0.0143069302376784	0.0366330686177924
Y	11725670	11745502	2	gain	AA	2.973	germline	1	0.815161308000735	0.781842639788595
Y	11745502	11747981	9	gain	AAAAAABBB	8.84175	germline	1	0.0832730016699137	0.270051638620094
Y	26636855	26641813	4	gain	AABB	12.4108	germline	1	0.0143144867235063	0.0366451661211967
Y	26641813	26656687	2	gain	AB	100	germline	1	0.233309627531711	0.473116034846679
Y	56826117	56838512	23	gain	AAAAAAAAAAAAAAABBBBBBBB	2.24421	germline	1	0.000107528644437587	9.0815030000746e-05
Y	56838512	56850907	8	gain	AAAAAABB	16.0532	germline	1	0.000532266453904533	0.000671189037765529
