chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	1175868	1429098	2	neutral	AA	7.06699	somatic	0	0.265653572469759	0.173756838073164
1	4216830	4430424	2	neutral	AA	16.2806	somatic	0	7.95462736316647e-05	0.000222007012144143
1	5670150	5672352	6	gain	AAAABB	2.23414	somatic	0	0.0832903978891617	0.270081908657654
1	5672352	5676756	3	gain	AAB	1.50115	somatic	0	0.0143185575761948	0.0366528332324391
1	11001192	11113494	2	neutral	AA	12.8402	somatic	0	0.0117079286324825	0.0227581294736778
1	16605282	16631706	9	gain	AAAAAABBB	2.18671	germline	1	2.21034038841547e-05	1.22943558713562e-05
1	16882734	16933380	4	gain	AAAB	21.8757	germline	1	4.33380554141875e-08	4.13212053462786e-09
1	16935582	16944390	4	gain	AAAB	27.0722	germline	1	0.00270226885379873	0.00496039135311066
1	23057142	23121000	2	neutral	AA	48.0467	somatic	0	0.553808309461821	0.409485109665897
1	26133336	26139942	1	loss	A	-1	somatic	0	0.0207112115005055	0.0564619264292129
1	31431348	31433550	5	gain	AAABB	3.86826	germline	1	0.0832909371570274	0.270082845157033
1	43423440	43998162	2	neutral	AA	10.8843	somatic	0	0.640611496317119	0.433709327641678
1	44077434	44361492	2	neutral	AA	25.718	somatic	0	0.999196825411222	0.606133970949195
1	45350190	45473502	1	loss	A	-1	germline	1	9.21899113190587e-36	0
1	53708982	53779446	2	neutral	AA	95.1869	somatic	0	0.931629429197059	0.303853886680475
1	55662156	55668762	1	loss	A	-1	somatic	0	0.00382182486110887	0.0088627868380482
1	72300468	72346710	1	loss	A	-1	germline	1	4.71826058674371e-14	1.11022302462516e-16
1	103361880	103366284	1	loss	A	-1	somatic	0	0.0200390015327724	0.0543298672762018
1	103414728	103458768	2	neutral	AA	36.9794	somatic	0	0.776979621578077	0.718016986884461
1	105473598	105480204	1	loss	A	-1	somatic	0	0.00346329428016566	0.00617048941701104
1	125069196	125073600	3	gain	-	-1	somatic	0	0.0144118704642295	0.0369370128334944
1	125080206	125082408	10	gain	-	-1	germline	1	0.0832699078059368	0.270046323437627
1	125082408	125157276	4	gain	-	-1	germline	1	2.21487580311232e-05	1.23382800791827e-05
1	125161680	125163882	4	gain	-	-1	germline	1	0.083293094256773	0.270086591178252
1	125163882	125166084	6	gain	-	-1	germline	1	0.0832839268953775	0.270070670849988
1	152583186	152614014	1	loss	A	-1	somatic	0	9.21336608362765e-10	2.77817768790101e-11
1	158896320	158900724	1	loss	A	-1	somatic	0	0.0184729208773235	0.0494061134553645
1	177527442	177542856	2	neutral	AA	100	somatic	0	0.201716866097727	0.0436549261054971
1	183052260	183404580	2	neutral	AA	87.6073	somatic	0	0.0276810477578036	0.0428878355147352
1	187493694	187498098	1	loss	A	-1	somatic	0	0.0209738885290301	0.0572602102566486
1	200161800	200608806	2	neutral	AA	49.4329	somatic	0	0.00191783547587265	0.00934247527323528
1	224011662	224013864	9	gain	AAAAAAAAA	2.22826	germline	1	0.0832731428107422	0.270051941929033
1	226817010	226880868	2	neutral	AA	21.8272	somatic	0	0.6600813804001	0.853416890263746
1	228067746	228072150	0	loss	-	-1	somatic	0	0.0143150676703497	0.0366464260196495
1	229677408	229686216	1	loss	A	-1	somatic	0	0.00132610262170272	0.00162952777397696
1	234775038	234777240	4	gain	AAAB	20.5274	germline	1	0.0832947121112797	0.270089400719055
1	234777240	234781644	7	gain	AAAAABB	5.03153	germline	1	0.0143105574405443	0.0366387386578566
1	242515068	242858580	2	neutral	AA	47.7673	somatic	0	0.634585583634099	0.151621097433935
1	246199014	246293700	2	neutral	AA	8.96179	somatic	0	0.936948740021862	0.933650019213997
1	248627820	248777556	2	neutral	AA	36.595	somatic	0	0.0412027281438684	0.0645478546282447
2	3179688	3181890	6	gain	-	-1	somatic	0	0.0832839268953775	0.270070670849988
2	4163982	4177194	1	loss	A	-1	somatic	0	8.70171365753731e-05	5.23981609770185e-05
2	16147266	16149468	1	loss	A	-1	somatic	0	0.0837221754148182	0.270830927420634
2	34472310	34505340	1	loss	A	-1	germline	1	7.83130132312719e-10	2.70649058720096e-11
2	35751672	35767086	1	loss	A	-1	somatic	0	1.03869152094803e-05	4.61275606056244e-06
2	41010048	41023260	1	loss	A	-1	somatic	0	7.85846776766849e-05	4.58852302801516e-05
2	48622362	48631170	1	loss	A	-1	somatic	0	0.00178191184092978	0.00258175650971537
2	68953428	68973246	2	neutral	AA	100	somatic	0	0.479820579377876	0.654614363563467
2	86071776	86177472	2	neutral	AA	100	somatic	0	0.348089275360415	0.297817645563961
2	89773338	89782146	6	gain	-	-1	germline	1	0.000532462356997352	0.000671394621334254
2	89782146	89790954	5	gain	-	-1	germline	1	0.00270217579502149	0.0049602872875969
2	89793156	89795358	2	neutral	AA	100	somatic	0	0.139116350675994	0.356596618090533
2	89795358	89826186	4	gain	AAAA	1.96807	germline	1	4.25445992331998e-10	1.02574615468143e-11
2	89826186	89841600	33	gain	AAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBB	21.8999	germline	1	4.59360066913654e-06	1.66336276774537e-06
2	89841600	89850408	4	gain	AABB	18.4435	germline	1	0.000532630213243937	0.000671450965884612
2	91411626	91416030	5	gain	-	-1	germline	1	0.0143143868006051	0.0366438634089348
2	104542152	104579586	2	neutral	AA	53.1451	somatic	0	0.175826478659728	0.245132200584765
2	109197180	109201584	10	gain	AAAAAAAAAB	100	germline	1	0.014308430408786	0.0366374575680719
2	117040704	117045108	0	loss	-	-1	somatic	0	0.0143159187977043	0.0366505265229333
2	124619988	124648614	2	neutral	AA	55.0709	somatic	0	0.639764253063808	0.896606766402564
2	126916674	126921078	1	loss	A	-1	somatic	0	0.0207626907541209	0.056617225289004
2	132243312	132245514	4	gain	AABB	1.76859	somatic	0	0.0832914764277213	0.270083781658782
2	134632482	135966894	2	neutral	AA	6.0603	somatic	0	0.248466071755785	0.0288204962499635
2	145677714	145904520	2	neutral	AA	92.0009	somatic	0	0.982528922573989	0.704650856232726
2	160734990	160873716	2	neutral	AA	100	somatic	0	0.0117535324287934	0.0184912594847897
2	171731778	171863898	2	neutral	AA	54.5678	somatic	0	0.506314046597834	0.490489070115624
2	176400018	176408826	1	loss	A	-1	somatic	0	0.00156102614839696	0.00174438681405253
2	179203164	179211972	1	loss	A	-1	somatic	0	0.00104911131299774	0.00132442990489956
2	180189660	180271134	2	neutral	AA	31.3027	somatic	0	0.196658943777004	0.441283551420059
2	194042442	194110704	2	neutral	AA	100	somatic	0	0.681951348957271	0.658575203661531
2	207512076	207655206	2	neutral	AA	29.7751	somatic	0	0.155967402228403	0.175499377247799
2	227376318	227393934	3	gain	AAB	3.25645	somatic	0	9.74883493073223e-07	2.32945026823472e-07
2	241590228	241592430	4	gain	AABB	9.54253	somatic	0	0.0832925549775942	0.270085654669392
3	20062422	20214360	2	neutral	AA	39.1417	somatic	0	0.0236369813368931	0.00788276242317276
3	28614990	28648020	2	neutral	AA	100	somatic	0	0.291129538316684	0.4323004609694
3	45004476	45092556	2	neutral	AA	100	somatic	0	0.168502642070465	0.5211323407462
3	46951044	47023710	2	neutral	AA	72.2167	somatic	0	0.330731727206483	0.625090938615392
3	52993332	53004342	1	loss	A	-1	somatic	0	0.000190493609929301	0.000189116966814562
3	65203422	65229846	1	loss	A	-1	germline	1	2.3542808169742e-07	3.52790991975382e-08
3	68691390	68697996	1	loss	A	-1	somatic	0	0.00437384764562499	0.00691586002355138
3	75733386	75865506	2	neutral	AA	0.578131	germline	1	0.117455218437305	0.100220355783429
3	76231038	76299300	2	neutral	AA	38.0159	somatic	0	0.335019680486652	0.0572803936392341
3	77779044	77787852	3	gain	AAB	0.804425	somatic	0	0.000913722150561627	0.00187021976776813
3	90354666	90669552	2	neutral	AA	1.59243	somatic	0	1.61084628511341e-24	0
3	90669552	90713592	1	loss	A	-1	germline	1	7.25002219458359e-10	1.05249142734465e-12
3	98088090	98143140	2	neutral	AA	5.74443	germline	1	0.205204398408046	0.157124606155704
3	98687034	98693640	1	loss	A	-1	somatic	0	0.00460174476939059	0.0127925590614182
3	99224322	99230928	1	loss	A	-1	somatic	0	0.00668093666741783	0.00936130160142901
3	106442478	106462296	2	neutral	AA	100	somatic	0	0.578084942436074	0.506981335646121
3	111524694	111526896	0	loss	-	-1	germline	1	0.0832650554896121	0.270037895860503
3	131990082	131994486	1	loss	A	-1	somatic	0	0.0213985162300133	0.0516316932531959
3	132745368	133106496	2	neutral	AA	100	somatic	0	6.89171659041635e-06	6.08860021509283e-05
3	139113552	139117956	1	loss	A	-1	somatic	0	0.0208018753776511	0.0564030387524244
3	141993768	142051020	2	neutral	AA	64.4678	somatic	0	0.799944617560228	0.730695697551727
3	146666412	146673018	1	loss	A	-1	somatic	0	0.00603977823952279	0.0097235070916285
3	151805880	152114160	2	neutral	AA	100	germline	1	0.00335745782373397	0.0622975578244969
3	155608734	155705622	2	neutral	AA	77.8823	somatic	0	0.361543826241822	0.0287226072977425
3	163723104	163769346	2	neutral	AA	100	somatic	0	0.452778030227009	0.554669519741967
3	183404580	183411186	1	loss	A	-1	somatic	0	0.004106971460219	0.00842259334471829
3	185452440	185456844	1	loss	A	-1	somatic	0	0.0162185936680265	0.0413552444018539
3	189035094	189059316	2	neutral	AA	54.579	somatic	0	0.704786080702629	0.815436882593462
3	190019388	190023792	0	loss	-	-1	somatic	0	0.0144829160824766	0.0371641856183739
3	192133308	192139914	1	loss	A	-1	somatic	0	0.0061136895301131	0.0094961637626374
3	193157238	193168248	1	loss	A	-1	somatic	0	0.000395647853549231	0.000262549882458774
4	554904	557106	3	gain	AAB	4.91824	somatic	0	0.0832963299912417	0.27009221028119
4	557106	590136	2	neutral	AA	49.9908	somatic	0	0.364552017700044	0.758184334513847
4	10210674	10232694	1	loss	A	-1	germline	1	2.19549234112324e-07	3.3427070444958e-08
4	10391238	10400046	1	loss	A	-1	germline	1	0.00117619689845057	0.00159857805031705
4	26287476	26294082	1	loss	A	-1	somatic	0	0.00520363735796889	0.0105210966794527
4	31814496	31818900	0	loss	-	-1	germline	1	0.0143083453333167	0.0366379699992809
4	37799532	37828158	2	neutral	AA	100	somatic	0	0.53948486010838	0.276658433314414
4	40294398	40296600	5	gain	AAABB	6.20423	germline	1	0.0832914764277213	0.270083781658782
4	43148190	43165806	2	neutral	AA	54.5684	somatic	0	0.0761738211354812	0.109460352133577
4	45024294	45026496	0	loss	-	-1	somatic	0	0.0832688294936251	0.270044450626114
4	46200162	46204566	1	loss	A	-1	somatic	0	0.0208849419184042	0.0570029440546516
4	49089186	49091388	4	gain	AAAB	19.8105	somatic	0	0.0832925549775942	0.270085654669392
4	49146438	49155246	91	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB	100	somatic	0	0.0026999432626761	0.0049576863000772
4	49652898	49657302	15	gain	AAAAAAAAAAABBBB	100	somatic	0	0.0143065588515361	0.0366323336008432
4	51815262	51817464	2	neutral	AA	100	somatic	0	0.22782641464049	0.468192747945707
4	62803242	62812050	1	loss	A	-1	germline	1	0.0208348544561474	0.0568497366856435
4	65868426	65936688	2	neutral	AA	36.5193	somatic	0	0.379666612650588	0.549952580858606
4	68517432	68623128	1	loss	A	-1	germline	1	7.06794307043756e-23	0
4	70620342	70624746	1	loss	A	-1	somatic	0	0.0209001190765416	0.0570578543848258
4	74559720	74564124	1	loss	A	-1	somatic	0	0.015083863929348	0.0387775697723629
4	76215624	76418208	2	neutral	AA	90.0513	somatic	0	0.00958171638256175	0.0051358288490837
4	76856406	76968708	2	neutral	AA	54.5679	somatic	0	0.40151378778282	0.536970012380197
4	91010862	91015266	1	loss	A	-1	somatic	0	0.0203195649782362	0.0461187438173485
4	95897100	95923524	2	neutral	AA	100	somatic	0	0.17223367321506	0.191955266445792
4	106136400	106143006	1	loss	A	-1	somatic	0	0.00615620282930705	0.00997208162848007
4	118066836	118159320	2	neutral	AA	85.7457	somatic	0	0.211593506722138	0.314726857051916
4	121361028	121369836	1	loss	A	-1	somatic	0	0.00102283787496525	0.00159168853419012
4	123133638	123334020	2	neutral	AA	64.6505	somatic	0	0.031443867867352	0.0650472431467611
4	137492880	137578758	2	neutral	AA	36.3786	somatic	0	0.640875411970081	0.893279383694613
4	151387500	151519620	2	neutral	AA	35.7879	somatic	0	0.0139513725164487	0.0203222648322829
4	154197252	154318362	2	neutral	AA	9.94015	somatic	0	0.0879361499350533	0.138665233974708
4	159347730	159719868	2	neutral	AA	22.2389	somatic	0	0.0954762921455048	0.0321217005598108
4	161032260	161082906	3	gain	AAB	100	germline	1	4.61011548018728e-16	0
4	167803410	168600534	2	neutral	AA	15.4904	somatic	0	0.57669115669147	0.0522643825046109
4	169078368	169362426	2	neutral	AA	28.0949	somatic	0	0.585474254064415	0.406477711406101
4	172498074	172513488	1	loss	A	-1	somatic	0	0.00083348285818825	0.00499130635626777
4	172575144	172630194	2	neutral	AA	36.3786	somatic	0	0.00561376413092085	0.00749794333717735
4	175792266	175827498	2	neutral	AA	54.6331	somatic	0	0.137520003459051	0.128364080918047
4	175930992	176047698	2	neutral	AA	100	somatic	0	0.576591713636492	0.0934147657513515
4	178661472	178734138	2	neutral	AA	100	somatic	0	0.726478090213684	0.347681031163258
4	189268506	189279516	1	loss	A	-1	somatic	0	0.00208900766520499	0.0078163556337536
5	413976	416178	5	gain	-	-1	germline	1	0.0832914764277213	0.270083781658782
5	757488	777306	3	gain	-	-1	germline	1	0.000533074070710349	0.000671901881900916
5	3956994	3972408	1	loss	A	-1	germline	1	1.73473626249756e-05	7.70079575940219e-06
5	9266016	9272622	1	loss	A	-1	somatic	0	0.00613147855040218	0.00958334805065053
5	12811236	12820044	1	loss	A	-1	somatic	0	0.00117128185643488	0.00141166344671761
5	46404948	46409352	1	loss	A	-1	somatic	0	0.0162279059958446	0.04247171682022
5	52909656	52914060	1	loss	A	-1	somatic	0	0.020672998199854	0.0562515902016716
5	60704736	60709140	1	loss	A	-1	somatic	0	0.0196459500888332	0.0513994613057175
5	118538064	118544670	1	loss	A	-1	somatic	0	0.018192716725672	0.048533824731792
5	120044232	120048636	1	loss	A	-1	somatic	0	0.0220409799782209	0.0480723461222342
5	137517102	137521506	1	loss	A	-1	somatic	0	0.0207421799445541	0.056482064711884
5	140144088	140161704	2	neutral	AA	100	somatic	0	0.635124920365204	0.727786771573294
5	142445178	142456188	2	neutral	AA	73.9913	somatic	0	0.132502704518065	0.255066320143413
5	145431090	145461918	2	neutral	AA	100	somatic	0	0.365297182407181	0.517257152262307
5	145739370	145743774	1	loss	A	-1	somatic	0	0.0205697197729646	0.0557303540472421
5	145959570	146043246	2	neutral	AA	100	somatic	0	0.213388436896488	0.629254816465634
5	146071872	146362536	2	neutral	AA	46.236	somatic	0	0.00934740462147918	0.0175636680929955
5	146981298	147053964	2	neutral	AA	28.1835	somatic	0	0.740082074913288	0.830877949968501
5	150823788	150843606	1	loss	A	-1	germline	1	9.79861532192273e-07	1.64960369253286e-07
5	154254504	154280928	2	neutral	AA	100	somatic	0	0.700162641119035	0.704862794318065
5	154690500	154697106	2	neutral	AA	100	somatic	0	0.499773700787697	0.362852814158561
5	157068660	157079670	2	neutral	AA	100	somatic	0	0.0255331332219112	0.0245222905683089
5	160409094	160411296	2	neutral	AA	100	somatic	0	0.766204212959971	0.882554525287632
5	160818666	160873716	2	neutral	AA	36.3786	somatic	0	0.174487499082441	0.414516007616766
5	163031676	163033878	2	neutral	AA	100	somatic	0	0.14118232840542	0.359492009920253
5	163269492	163302522	2	neutral	AA	100	somatic	0	0.413112840339938	0.632134043388154
5	163804578	163833204	2	neutral	AA	100	somatic	0	0.0542714704227159	0.153597299346948
5	164736024	164740428	2	neutral	AA	100	germline	1	0.711408059012922	0.951790246972879
5	165722520	165724722	3	gain	AAA	72.2082	somatic	0	0.0833966882741809	0.270266444797854
5	167889288	167895894	2	neutral	AA	72.6236	somatic	0	0.697083764298954	0.765325033974067
5	170337912	170340114	2	neutral	AA	54.5678	somatic	0	0.3434412760222	0.587875138949819
5	171498366	171507174	2	neutral	AA	100	somatic	0	0.457786612561748	0.527103064488216
5	172407792	172599366	2	neutral	AA	39.4647	somatic	0	0.00565244638592963	0.00619921832693282
5	172956090	172980312	2	neutral	AA	72.8843	somatic	0	0.0258968124072619	0.0565239542735532
5	176307534	176336160	2	neutral	AA	38.7332	somatic	0	0.691763073876315	0.280583654279051
5	178584402	178586604	8	gain	AAAAABBB	58.8433	germline	1	0.083274221168301	0.270053814778464
5	178681290	178692300	1	loss	A	-1	somatic	0	0.00523585731651894	0.00797533211409673
5	181165146	181171752	2	neutral	AA	54.5678	somatic	0	0.930785438151491	0.673113603799502
6	257634	383148	3	gain	AAB	0.46811	germline	1	4.27324419244627e-37	0
6	515268	570318	2	neutral	AA	21.8271	somatic	0	0.350668299300724	0.551475014417917
6	9184542	9199956	2	neutral	AA	37.1868	somatic	0	0.0773188035952692	0.0921017359504985
6	10221684	10292148	2	neutral	AA	28.7415	somatic	0	0.885765314898581	0.566421965732149
6	21495924	21511338	2	neutral	AA	55.0709	somatic	0	0.148050499745489	0.175502857776893
6	25697340	25725966	2	neutral	AA	100	somatic	0	0.312024799017325	0.269550274252958
6	32486106	32565378	0	loss	-	-1	germline	1	4.25252876603332e-10	1.03164143894219e-11
6	32565378	32666670	1	loss	A	-1	somatic	0	3.65795623885754e-07	2.21241172049247e-08
6	33481410	33532056	2	neutral	AA	77.5089	somatic	0	0.0679122685025056	0.195289325275564
6	35786904	35797914	5	gain	AAAAB	16.8254	germline	1	0.000107662478923994	9.088165187221e-05
6	35797914	35800116	3	gain	AAB	71.6675	germline	1	0.0832963299912417	0.27009221028119
6	54063504	54070110	0	loss	-	-1	germline	1	0.0143070692548232	0.0366343831124883
6	57020790	57038406	2	neutral	AA	100	somatic	0	0.24808702047914	0.526840109227425
6	60235710	60240114	4	gain	-	-1	somatic	0	0.0143152378922496	0.036645657219973
6	72855372	72943452	2	neutral	AA	92.7197	somatic	0	0.13899962213821	0.0747353854203858
6	73881504	73892514	1	loss	A	-1	somatic	0	0.000383523453133634	0.000280060052156528
6	76151766	76330128	2	neutral	AA	18.8466	somatic	0	0.820168547089762	0.635568327945741
6	76728690	76741902	1	loss	A	-1	somatic	0	0.000297438702470814	0.000251667457268567
6	78256878	78327342	1	loss	A	-1	germline	1	3.08386198771451e-20	0
6	92114064	92169114	2	neutral	AA	100	somatic	0	0.281140166214245	0.355623757242979
6	103289214	103315638	1	loss	A	-1	germline	1	6.66889398306706e-08	6.17982731654365e-09
6	104156802	104183226	2	neutral	AA	100	somatic	0	0.00929316169282663	0.0825186059408937
6	134176668	134183274	2	neutral	AA	100	somatic	0	0.59712819962425	0.98040397563085
6	134319798	134335212	2	neutral	AA	54.568	germline	1	0.0222544487119839	0.115071253895905
6	136444728	136493172	2	neutral	AA	54.5678	somatic	0	0.438227141997284	0.16966372206488
6	154483512	154505532	2	neutral	AA	100	somatic	0	0.180432159202755	0.360152055216007
6	156297960	156308970	2	neutral	AA	100	germline	1	0.211589585926096	0.288653326864671
6	157308678	157315284	9	gain	AAAAAABBB	3.21344	germline	1	0.0143086856378711	0.0366379699992827
6	157876794	157916430	2	neutral	AA	22.9392	germline	1	0.415554511508235	0.296881301407215
6	159131934	160072188	2	neutral	AA	26.0628	somatic	0	0.000132387506539511	0.00116718663083193
6	163751730	163786962	2	neutral	AA	100	germline	1	0.117193424582732	0.132955607996073
6	165310746	165319554	0	loss	-	-1	germline	1	0.0143401947000711	0.0367305666119474
6	165676278	165759954	2	neutral	AA	12.0149	somatic	0	0.200357955915225	0.297853019874025
7	43584186	43592994	1	loss	A	-1	somatic	0	0.00156672319936024	0.00162125186159212
7	51526800	51531204	1	loss	A	-1	somatic	0	0.0259924122806731	0.0557041805102291
7	57485412	57496422	3	gain	-	-1	somatic	0	0.000107774441346267	9.10008921467531e-05
7	58060134	58066740	3	gain	-	-1	somatic	0	0.00270338578756456	0.00496268130080457
7	61046046	61057056	3	gain	-	-1	somatic	0	0.000107773243306213	9.10279405966774e-05
7	62296782	62378256	3	gain	AAB	0.656266	germline	1	5.00117596808057e-12	3.58462259875125e-10
7	62402478	62406882	5	gain	-	-1	germline	1	0.0143143868006051	0.0366438634089348
7	62437710	62455326	3	gain	AAB	4.06277	germline	1	2.13327128422717e-06	2.11003406047627e-06
7	65225442	65229846	1	loss	A	-1	somatic	0	0.0143365296956989	0.0366984809264502
7	65795760	65822184	3	gain	AAB	0.152609	somatic	0	1.99287492948648e-09	7.63916707668955e-11
7	67301928	67478088	2	neutral	AA	12.058	somatic	0	0.00015001302698819	0.00128291044798623
7	69318960	69633846	2	neutral	AA	100	somatic	0	1.73246076647228e-06	0.000110511675687541
7	69633846	70419960	2	neutral	AA	64.5439	somatic	0	0.0149843919870364	0.00617949766630443
7	70955046	70961652	1	loss	A	-1	somatic	0	0.0143253693095327	0.0366777024979039
7	72249822	72254226	2	neutral	AA	100	somatic	0	0.536656098713238	0.930693170513464
7	89852610	89861418	3	gain	AAB	10.0848	somatic	0	0.000533341150920269	0.000672343678896237
7	92014974	92041398	2	neutral	AA	36.6632	somatic	0	0.755027714688556	0.594630972626795
7	92624928	92660160	2	neutral	AA	37.0511	somatic	0	0.804447254564709	0.532051229476696
7	96868182	96881394	2	neutral	AA	100	somatic	0	0.74053175135245	0.561880840926876
7	100730490	100739298	1	loss	A	-1	somatic	0	0.00073496721855091	0.00119898933299867
7	100948488	100957296	3	gain	AAB	1.43352	germline	1	0.00053387268104314	0.000673877979388449
7	100957296	100959498	14	gain	AAAAAAAAAAAAAB	14.0912	germline	1	0.0832666729029362	0.27004070503155
7	100959498	100972710	4	gain	AABB	0.229103	germline	1	2.21552269822829e-05	1.23364684704308e-05
7	101322828	101490180	3	gain	AAB	10.2699	somatic	0	1.27145725067084e-49	0
7	101490180	101492382	3	gain	-	-1	somatic	0	0.0833184435687139	0.270130609768406
7	108162240	108340602	2	neutral	AA	100	somatic	0	0.0235517438731003	0.0794731045679158
7	117007674	117058320	2	neutral	AA	84.6245	somatic	0	0.730785080172302	0.411539277199707
7	118817718	119106180	2	neutral	AA	22.5848	somatic	0	0.336557151857984	0.187468729594843
7	132511956	132553794	2	neutral	AA	100	somatic	0	0.0480619639761401	0.0960748988364545
7	143497734	143506542	2	neutral	AA	100	somatic	0	0.988689481596206	0.85770352725633
7	143847852	143850054	4	gain	AAAB	82.4381	somatic	0	0.0832941728236158	0.270088464203084
7	144649380	144735258	2	neutral	AA	21.8272	somatic	0	0.457959056646139	0.119327683365984
7	149066592	149070996	2	neutral	AA	100	somatic	0	0.0938389600551074	0.150340298480245
7	152400420	152402622	3	gain	AAB	3.22992	germline	1	0.0832979478966593	0.270095019864658
7	152402622	152407026	8	gain	AAAAAABB	1.13018	germline	1	0.0143091961080895	0.0366364327244624
7	152407026	152409228	4	gain	AAAB	6.14582	germline	1	0.0832947121112797	0.270089400719055
7	155326878	155335686	3	gain	AAB	6.85401	somatic	0	0.0308198720244058	0.138977557008169
7	158594646	158596848	4	gain	AABB	32.1194	germline	1	0.0832914764277213	0.270083781658782
8	642984	649590	1	loss	A	-1	germline	1	0.0207888853857104	0.0567081104871288
8	5736210	5747220	1	loss	A	-1	somatic	0	0.000193002995916724	0.000267528276019946
8	6112752	6114954	0	loss	-	-1	somatic	0	0.0832650554896121	0.270037895860503
8	25113810	25133628	1	loss	A	-1	germline	1	1.03880210260514e-06	2.20315079180189e-07
8	25208496	25215102	1	loss	A	-1	somatic	0	0.00703230452161358	0.0123330973296067
8	38072580	38076984	1	loss	A	-1	somatic	0	0.0221751886276069	0.0560860310028174
8	39376164	39528102	1	loss	A	-1	germline	1	1.78119128442195e-39	0
8	42326844	42337854	1	loss	A	-1	germline	1	0.00480550635977125	0.0242192081492946
8	43236270	43242876	8	gain	-	-1	somatic	0	0.00270073375838289	0.00495872654502394
8	46493028	46497432	1	loss	A	-1	somatic	0	0.023454763426309	0.055001845618767
8	59222790	59224992	4	gain	AAAA	14.6345	somatic	0	0.0832941728236158	0.270088464203084
8	74449620	74456226	1	loss	A	-1	somatic	0	0.0214098993871629	0.0574506913907179
8	76087908	76127544	2	neutral	AA	54.5678	somatic	0	0.90546193771538	0.922376257336095
8	81053418	81308850	2	neutral	AA	36.8692	somatic	0	2.82040962600273e-06	0.000107641903058564
8	82357002	82383426	1	loss	A	-1	germline	1	2.18583867916397e-08	9.78349734559458e-10
8	96414570	96418974	1	loss	A	-1	somatic	0	0.0219900980784612	0.0566235794372951
8	104546556	104550960	1	loss	A	-1	somatic	0	0.0588332441764009	0.184872183167561
8	120918426	120920628	1	loss	A	-1	somatic	0	0.0833092739473599	0.270114687546249
8	121149636	121292766	2	neutral	AA	15.4875	somatic	0	0.00206414994076915	0.019239906677846
8	126179004	126183408	1	loss	A	-1	somatic	0	0.015752904935893	0.0407547497526948
8	127982442	128044098	2	neutral	AA	27.286	somatic	0	0.450133990506465	0.633452985269743
8	136147458	136151862	0	loss	-	-1	somatic	0	0.0143102170967204	0.0366402760173313
8	142218372	142229382	2	neutral	AA	65.6368	somatic	0	0.58909288055669	0.564592817723192
8	144087870	144125304	2	neutral	AA	100	somatic	0	0.577398551804297	0.454369643038998
8	144125304	144127506	8	gain	AAAAAAAB	11.5657	germline	1	0.0832758387258491	0.270056624070387
8	144211182	144244212	2	neutral	AA	69.5988	somatic	0	0.034111219729412	0.180738562147384
9	8169420	8228874	2	neutral	AA	100	somatic	0	0.599661960004225	0.915500187198905
9	10188654	10243704	2	neutral	AA	36.5167	somatic	0	0.0230250017488167	0.0590252227935752
9	15151962	15162972	1	loss	A	-1	somatic	0	0.000294544900570175	0.000271433459870796
9	16862916	16931178	2	neutral	AA	12.8635	somatic	0	0.207230492134342	0.0455486121507164
9	32080938	32107362	2	neutral	AA	54.5788	somatic	0	0.787918048373268	0.756343527979085
9	33794094	33802902	3	gain	AAA	13.6411	somatic	0	0.000596696047977694	0.000880359795885077
9	40869120	40913160	4	gain	AABB	3.48314	germline	1	0.000107663675802237	9.08848296856668e-05
9	40913160	40915362	7	gain	-	-1	germline	1	0.0832812307681655	0.270065988530864
9	40921968	40924170	5	gain	AAABB	1.999	germline	1	0.0832914764277213	0.270083781658782
9	40924170	40928574	7	gain	AAAAABB	2.04439	germline	1	0.0143112381496132	0.0366402760173331
9	69122982	69129588	1	loss	A	-1	germline	1	0.0188450820777977	0.0505849175363043
9	86538600	86540802	1	loss	A	-1	somatic	0	0.0833168253408363	0.270127799914714
9	93758958	93895482	2	neutral	AA	28.7817	somatic	0	0.211643857559699	0.500983914114353
9	98546106	98550510	1	loss	A	-1	somatic	0	0.0183078771672166	0.0488946298515053
9	112898742	112905348	2	neutral	AA	100	somatic	0	0.869291219022959	0.987167849840023
9	113563746	113579160	2	neutral	AA	54.5678	somatic	0	0.519334657762822	0.619202355323154
9	127456164	127553052	2	neutral	AA	22.8797	somatic	0	0.998664472678647	0.66139958055165
9	127553052	127660950	2	neutral	AA	21.8272	somatic	0	3.10385032409992e-06	1.12682527246832e-05
9	128649648	128651850	0	loss	-	-1	somatic	0	0.0832655946245589	0.27003883224848
9	129103260	129160512	2	neutral	AA	15.5912	somatic	0	0.782721793672634	0.525022701355869
9	129424752	129437964	3	gain	AAB	0.434125	germline	1	2.2248187311097e-05	1.24544936638271e-05
9	136717776	136768422	2	neutral	AA	95.9929	somatic	0	0.886850140289219	0.981726775827359
9	136768422	136770624	1	loss	A	-1	somatic	0	0.0833572886761519	0.270198052656924
10	4247658	4249860	0	loss	-	-1	somatic	0	0.0832903978891617	0.270081908657648
10	26624382	26628786	3	gain	-	-1	somatic	0	0.0143202602416182	0.0366536021638334
10	26937066	26941470	3	gain	-	-1	somatic	0	0.0143171104509951	0.0366497576479927
10	38486556	38526192	3	gain	-	-1	somatic	0	4.54576488746271e-13	1.36113342819044e-13
10	38526192	38528394	16	gain	-	-1	germline	1	0.0832661337623336	0.270039768638833
10	38574636	38581242	4	gain	-	-1	somatic	0	0.00270472045574849	0.00496872308137586
10	39257256	39268266	1	loss	A	-1	somatic	0	0.00158175016166313	0.00158744643252462
10	39343134	39360750	1	loss	A	-1	somatic	0	5.89080709900779e-05	4.94682755473042e-05
10	39406992	39413598	1	loss	A	-1	somatic	0	0.0164485834384095	0.0399814944840904
10	41835798	41842404	2	neutral	AA	11.157	germline	1	0.288765268068132	0.704491087378608
10	41857818	41915070	35	gain	AAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBB	6.56821	germline	1	9.635433325122e-07	2.25114426322115e-07
10	42300420	42322440	3	gain	AAA	2.68948	somatic	0	4.49125013776296e-08	4.73686767588077e-09
10	42540438	42870738	2	neutral	AA	4.58613	germline	1	0.334938077799004	0.0732128266399626
10	45138798	45163020	2	neutral	AA	13.6423	somatic	0	0.0170163728445339	0.0685521680457161
10	46059234	46103274	2	neutral	AA	21.8271	somatic	0	0.433148737326935	0.564294240683854
10	46169334	46332282	3	gain	AAB	0.447412	germline	1	1.53192940881619e-30	0
10	46515048	46561290	5	gain	AAABB	0.615759	germline	1	4.38192908017394e-14	1.11022302462516e-16
10	49489950	49525182	2	neutral	AA	100	somatic	0	0.223725454207432	0.244417897277101
10	49740978	50238630	2	neutral	AA	90.1566	somatic	0	0.356982346587731	0.529309654288986
10	52389984	52425216	2	neutral	AA	36.3786	somatic	0	0.0314167891762957	0.20348465897735
10	53024160	53028564	1	loss	A	-1	somatic	0	0.020648515278413	0.0542249829392398
10	54602994	56941518	2	neutral	AA	13.0593	germline	1	0.544421829574814	0.00300651036845434
10	59951652	59967066	2	neutral	AA	100	somatic	0	0.905626665187822	0.463288092380045
10	67724712	67729116	1	loss	A	-1	somatic	0	0.0174286810520431	0.0455888263160067
10	68160708	68182728	2	neutral	AA	37.4205	germline	1	0.77419721762499	0.877418666565553
10	71362416	71428476	2	neutral	AA	10.1301	somatic	0	0.177126357004536	0.0356310233722544
10	75378864	75422904	2	neutral	AA	36.3786	somatic	0	0.563101719141882	0.821594423200176
10	76495278	76501884	1	loss	A	-1	somatic	0	0.00605388942733026	0.00949475285663759
10	76616388	76618590	1	loss	A	-1	somatic	0	0.0833168253408363	0.270127799914714
10	76618590	76794750	2	neutral	AA	100	somatic	0	0.00102080256325547	0.000298653522625147
10	80989560	80993964	1	loss	A	-1	somatic	0	0.0171223249317888	0.0437753553470465
10	83314872	83550486	2	neutral	AA	84.3593	somatic	0	0.130280244748859	0.147684329929523
10	86373450	86509974	2	neutral	AA	17.6163	somatic	0	0.00473993494777739	0.0177470712439586
10	92332062	92415738	2	neutral	AA	34.1858	somatic	0	0.0311083873277736	0.0806590839503584
10	97610256	97753386	2	neutral	AA	89.1195	somatic	0	0.415443268477181	0.600279348853818
10	98502066	98576934	2	neutral	AA	100	somatic	0	0.723575254052298	0.626203206239313
10	110630682	110665914	2	neutral	AA	54.5678	somatic	0	0.383158939039572	0.605085240351787
10	114541434	114673554	2	neutral	AA	15.5916	somatic	0	0.895569719276059	0.595644796934836
10	117639648	117648456	2	neutral	AA	100	somatic	0	0.687262609685635	0.809608556478388
10	118280430	118306854	2	neutral	AA	100	somatic	0	0.314403602266985	0.286288840913916
10	118745052	118753860	2	neutral	AA	100	somatic	0	0.749170943204587	0.747555807988784
10	120163140	120193968	2	neutral	AA	54.5678	somatic	0	0.240969149686065	0.425887122936439
10	123254748	123256950	4	gain	AAAB	12.0039	somatic	0	0.0832925549775942	0.270085654669392
10	123829470	124036458	2	neutral	AA	23.9214	somatic	0	0.00016126319191621	0.0107016733531867
10	126256074	126319932	2	neutral	AA	36.379	somatic	0	0.3597766634298	0.229862519346495
10	128462478	128464680	8	gain	AAAABBBB	50.8581	germline	1	0.0832758387258491	0.270056624070387
10	131622348	131624550	0	loss	-	-1	somatic	0	0.0832866230932937	0.270075353228363
11	4947894	4954500	1	loss	A	-1	somatic	0	0.00430706900085547	0.00883402484278051
11	5762634	5784654	1	loss	A	-1	germline	1	1.47159393955285e-07	3.10265222402961e-08
11	9501630	9506034	1	loss	A	-1	somatic	0	0.0210988965277934	0.0575552329352167
11	18923988	18941604	3	gain	AAB	2.79005	germline	1	9.67061567188967e-07	2.2607359051463e-07
11	22673994	22854558	2	neutral	AA	55.6282	somatic	0	0.143790244191348	0.0447044921762286
11	24829752	24909024	2	neutral	AA	100	somatic	0	0.968420225658635	0.938403643367257
11	27033954	27058176	2	neutral	AA	54.5678	somatic	0	0.675486828651271	0.832247229795302
11	28982724	28991532	1	loss	A	-1	somatic	0	0.00162682943171577	0.00165590012862415
11	30429438	30506508	2	neutral	AA	100	somatic	0	0.000107452756848464	0.00292263653321911
11	31371894	31376298	1	loss	A	-1	somatic	0	0.0259540254230588	0.0523768067531084
11	37742280	37746684	1	loss	A	-1	somatic	0	0.0221786856379882	0.0609134398642409
11	42947808	42950010	3	gain	AAB	6.21768	somatic	0	0.0832995658275326	0.270097829469459
11	46118688	46123092	1	loss	A	-1	somatic	0	0.0261378806082972	0.057189296833318
11	50174772	50179176	1	loss	A	-1	somatic	0	0.0144777574897466	0.0370579510368454
11	54757134	54776952	1	loss	A	-1	germline	1	6.85038749491406e-06	1.23990178801936e-06
11	55118262	55124868	1	loss	A	-1	somatic	0	0.00611050155379036	0.00938696133240446
11	55184322	55215150	1	loss	A	-1	germline	1	1.61401371884806e-08	9.92218751605378e-10
11	61341114	61391760	2	neutral	AA	54.5678	somatic	0	0.598970312135637	0.423963512975573
11	62259348	62307792	2	neutral	AA	100	germline	1	0.310100904647024	0.510482256324984
11	63426408	63430812	3	gain	AAB	5.67797	somatic	0	0.0143228145746275	0.0366594977734229
11	69913500	69928914	2	neutral	AA	54.5702	germline	1	0.387900183579621	0.424913627790391
11	71959158	71994390	2	neutral	AA	54.5678	somatic	0	0.636784803789256	0.302507016084145
11	73289166	73511568	2	neutral	AA	37.1311	germline	1	0.0108342430714142	0.00834426979121317
11	93673080	93825018	2	neutral	AA	100	somatic	0	0.629665735388756	0.269887543132212
11	94124490	94131096	1	loss	A	-1	somatic	0	0.00682736387165881	0.0135435272335874
11	95632860	95635062	1	loss	A	-1	somatic	0	0.0833626849899788	0.270207420696649
11	103652544	103670160	2	neutral	AA	100	somatic	0	0.762918488685894	0.249217209040894
11	104396820	104403426	1	loss	A	-1	somatic	0	0.0153984364450127	0.0399389288934877
11	105075036	105088248	2	neutral	AA	54.5678	germline	1	0.170246879079088	0.270386741985791
11	110179272	110333412	2	neutral	AA	74.3005	somatic	0	0.591553576926339	0.652464020466559
11	132053940	132060546	3	gain	AAB	6.56994	somatic	0	0.00270468941011647	0.00496387870454151
12	2254848	2257050	6	gain	AAAABB	11.7286	germline	1	0.0832833876642788	0.270069734381422
12	6132570	6139176	1	loss	A	-1	somatic	0	0.0045143950621399	0.00758400095706657
12	18096036	18100440	1	loss	A	-1	somatic	0	0.0226324422126439	0.0562292932310838
12	20568882	20628336	2	neutral	AA	100	somatic	0	0.713493179222592	0.271067333099708
12	25593846	25710552	2	neutral	AA	24.9106	somatic	0	0.0043769664847294	0.0292694984574983
12	34677096	34685904	2	neutral	AA	100	somatic	0	0.0145450563218781	0.0603213766841483
12	37616766	37625574	1	loss	A	-1	somatic	0	0.00149963275128211	0.00167844464266143
12	41223642	41272086	2	neutral	AA	100	somatic	0	0.100844743006123	0.168254759518887
12	41624406	42124260	2	neutral	AA	1.23299	somatic	0	0.0127193182278534	0.0628139010993316
12	42626316	42635124	1	loss	A	-1	somatic	0	0.00118374516054643	0.00171488014530785
12	45508734	45515340	1	loss	A	-1	somatic	0	0.00489948745023511	0.00962135588905821
12	47497140	47538978	2	neutral	AA	61.8074	somatic	0	0.0556003398738891	0.150776098604602
12	48314082	48318486	1	loss	A	-1	somatic	0	0.020623705917455	0.0561709854446537
12	54556752	54642630	2	neutral	AA	21.8281	somatic	0	0.518538624299333	0.684207590454414
12	56650854	56701500	2	neutral	AA	16.093	somatic	0	8.35247634631839e-05	3.38352044905177e-05
12	59542080	59553090	1	loss	A	-1	germline	1	0.000244872828694403	0.000239658393643483
12	59700624	60127812	2	neutral	AA	37.1021	somatic	0	0.0835755206769197	0.0177114939057231
12	60127812	60132216	0	loss	-	-1	somatic	0	0.014407076562538	0.0369354645876593
12	79760844	79769652	4	gain	AAAB	28.2645	germline	1	0.00053267518311039	0.000671516706796216
12	86032140	86038746	1	loss	A	-1	somatic	0	0.00447258603391865	0.00743700015709547
12	101653128	101681754	2	neutral	AA	54.5873	somatic	0	0.871626102347422	0.771634529987918
12	104247084	104293326	2	neutral	AA	72.6922	somatic	0	0.0246216714665667	0.0231504393507571
12	114063600	114065802	4	gain	AAAB	77.5543	somatic	0	0.0832947121112797	0.270089400719055
12	123818460	123974802	2	neutral	AA	39.9285	somatic	0	0.0346875643154445	0.0402226817152637
12	128083734	128085936	0	loss	-	-1	somatic	0	0.0832828484360083	0.270068797915221
12	131648772	131653176	1	loss	A	-1	somatic	0	0.0220709985622785	0.051645158680399
13	21377016	21379218	5	gain	-	-1	germline	1	0.0832914764277213	0.270083781658782
13	22020000	22024404	0	loss	-	-1	germline	1	0.014324006734233	0.0366848840002206
13	23057142	23063748	1	loss	A	-1	somatic	0	0.00549568119083681	0.00952442182536828
13	31957626	31964232	1	loss	A	-1	somatic	0	0.00604528387207461	0.00970564634297255
13	45422856	45427260	1	loss	A	-1	somatic	0	0.0206809885089546	0.0563378766929814
13	48959268	48963672	1	loss	A	-1	somatic	0	0.021798231330367	0.0574170153253057
13	50494062	50500668	1	loss	A	-1	somatic	0	0.00587534547835892	0.00949249580230982
13	58016094	58024902	1	loss	A	-1	germline	1	0.00113387203554209	0.00144691155867926
13	63027846	63043260	3	gain	-	-1	germline	1	2.33015770531596e-05	1.49347491272822e-05
13	63056472	63065280	3	gain	-	-1	germline	1	0.000532825108218035	0.000671723360376242
13	63065280	63067482	6	gain	-	-1	germline	1	0.0832909371570274	0.270082845157033
13	63067482	63069684	3	gain	-	-1	germline	1	0.0833162859372013	0.270126863301565
13	63769920	63776526	3	gain	-	-1	somatic	0	0.00270416168418877	0.00496330600015171
13	72232206	72238812	1	loss	A	-1	somatic	0	0.00538079748087191	0.0095415077028741
13	82590414	82599222	1	loss	A	-1	somatic	0	0.00174815026820351	0.00167884230708959
13	86754396	86875506	2	neutral	AA	21.8327	somatic	0	0.838449431691277	0.939055391820573
13	90363474	90374484	2	neutral	AA	100	germline	1	0.739601271206453	0.628854316710145
13	96976080	96980484	1	loss	A	-1	somatic	0	0.0274883891596224	0.05585805539399
13	97242522	97251330	2	neutral	AA	100	somatic	0	0.696184979948253	0.505466850380341
13	99935568	99946578	2	neutral	AA	10.923	somatic	0	0.846977695088776	0.734163566788909
13	100204212	100424412	2	neutral	AA	22.7839	somatic	0	0.553570608010467	0.138116710416346
13	103538040	103557858	2	neutral	AA	36.714	somatic	0	0.731197743183384	0.814064690302952
13	103681170	103689978	2	neutral	AA	54.5693	somatic	0	0.569646076009393	0.92294487604359
13	104720514	104733726	2	neutral	AA	100	somatic	0	0.823067325884751	0.994567969812628
13	106046118	106072542	2	neutral	AA	36.3786	somatic	0	0.800225077767494	0.527498430826126
13	107886990	107909010	2	neutral	AA	100	somatic	0	0.729567832657318	0.822929744328212
13	109216998	109219200	1	loss	A	-1	somatic	0	0.083338943325556	0.270166203094949
13	109512066	109516470	2	neutral	AA	54.5678	somatic	0	0.637467653948436	0.889127941798919
13	109782912	109787316	1	loss	A	-1	somatic	0	0.0209179170404874	0.0569841495875324
13	113207022	113218032	2	neutral	AA	100	somatic	0	0.0366724105104252	0.0511043858647079
13	113376576	113383182	1	loss	A	-1	somatic	0	0.00618009681818947	0.0101315334810135
14	0	16092216	4	gain	AAAB	-1	somatic	0	NA	NA
14	16092216	16094418	14	gain	-	-1	germline	1	0.0832666729029362	0.27004070503155
14	16094418	16096620	6	gain	-	-1	germline	1	0.0832909371570274	0.270082845157033
14	16096620	19727718	4	gain	AAAB	-1	somatic	0	0.69863778958077	0.782617748129818
14	19727718	19870848	4	gain	AAAB	1.2844	germline	1	4.28256848880558e-12	2.54241072639161e-14
14	19870848	19873050	3	gain	AAA	22.6619	germline	1	0.0834442037297511	0.270348906911391
14	19873050	19954524	4	gain	AAAB	1.03773	germline	1	5.28049884843925e-22	0
14	20236380	20238582	0	loss	-	-1	somatic	0	0.0832866230932937	0.270075353228363
14	21176634	21185442	2	neutral	AA	54.5678	somatic	0	0.142153047166576	0.10618915504602
14	23455704	23475522	2	neutral	AA	100	germline	1	0.182807120717752	0.251183953278289
14	23653884	23675904	2	neutral	AA	54.5679	somatic	0	0.308032699522859	0.292386316226323
14	23816832	23838852	1	loss	A	-1	germline	1	3.2124050252043e-06	1.17324295956234e-06
14	26476848	26503272	2	neutral	AA	100	somatic	0	0.802126307074747	0.724153971342936
14	28504890	28535718	2	neutral	AA	54.5678	somatic	0	0.702364377190094	0.831751163466401
14	30420630	30436044	2	neutral	AA	100	somatic	0	0.57569500448467	0.598778587487192
14	34346796	34351200	1	loss	A	-1	somatic	0	0.020793608200785	0.0567054906420557
14	36066558	36079770	2	neutral	AA	100	somatic	0	0.0365693557723908	0.0878177356792905
14	37290870	37293072	2	neutral	AA	100	somatic	0	0.43730970328073	0.6706410193996
14	37299678	37301880	0	loss	-	-1	somatic	0	0.0832909371570274	0.270082845157026
14	41142168	41199420	1	loss	A	-1	germline	1	2.25691886313816e-15	0
14	47237304	47248314	1	loss	A	-1	somatic	0	0.00116688852028182	0.00163773498687381
14	49564818	49591242	2	neutral	AA	54.5678	somatic	0	0.309908911993286	0.434126620117056
14	49591242	49633080	2	neutral	AA	63.6276	somatic	0	0.00116008031002683	0.00320091753499363
14	50630586	50634990	2	neutral	AA	54.5678	somatic	0	0.985621856183433	0.955902521588584
14	52253460	52288692	2	neutral	AA	15.6013	somatic	0	0.155851500848683	0.181852240566067
14	52528710	52530912	1	loss	A	-1	somatic	0	0.0833750975856345	0.270228968087609
14	53160684	53206926	2	neutral	AA	100	somatic	0	0.844359798991967	0.704864716543559
14	59749068	59751270	1	loss	A	-1	somatic	0	0.0833227589675223	0.270138102815859
14	61129722	61147338	2	neutral	AA	100	somatic	0	0.396905612406052	0.242102638224491
14	64353450	64408500	2	neutral	AA	28.8391	somatic	0	0.00561555957326875	0.00736940645203188
14	65106534	65124150	2	neutral	AA	27.284	somatic	0	0.113005788416029	0.109467508022499
14	73597446	73762596	2	neutral	AA	18.9599	somatic	0	5.69468520267037e-05	7.465945378482e-06
14	79639734	79648542	1	loss	A	-1	somatic	0	0.0012726104191848	0.00140974659287307
14	80835420	80879460	2	neutral	AA	100	somatic	0	0.0426139014249961	0.0225751818424806
14	82031106	82037712	1	loss	A	-1	germline	1	0.0208094364464573	0.0567212112729607
14	82704918	82755564	2	neutral	AA	24.7641	somatic	0	0.595851876871163	0.403269386415891
14	84829848	84836454	1	loss	A	-1	somatic	0	0.00643671102740885	0.00953839052868133
14	90444948	90515412	2	neutral	AA	49.6096	somatic	0	0.548889591318991	0.579514912482219
14	94637556	94670586	2	neutral	AA	36.8321	somatic	0	0.616578423382068	0.363438246217521
14	99926760	99928962	6	gain	AAAABB	30.0602	germline	1	0.0832866230932937	0.270075353228369
14	101723592	101725794	1	loss	A	-1	somatic	0	0.0833643039393039	0.27021023115479
14	103586484	103723008	2	neutral	AA	15.6541	somatic	0	0.00242042675322281	0.000312819600945424
14	104729322	104782170	2	neutral	AA	100	somatic	0	0.169228979090427	0.196746100401601
15	0	17080914	3	gain	-	-1	somatic	0	NA	NA
15	17080914	17083116	17	gain	-	-1	germline	1	0.0832661337623336	0.270039768638833
15	17083116	20379510	3	gain	-	-1	somatic	0	0.00202958638703601	0.000235495426370802
15	20379510	20381712	1	loss	A	-1	somatic	0	0.0921255744415833	0.285103118352369
15	20381712	20672376	3	gain	-	-1	germline	1	2.52910058320671e-13	2.22044604925031e-15
15	23438088	23455704	2	neutral	AA	31.9155	somatic	0	0.200663924096156	0.41521681278156
15	24871590	24873792	0	loss	-	-1	somatic	0	0.0832715252956137	0.270049132672658
15	25071972	25098396	2	neutral	AA	54.5678	somatic	0	0.504608524828239	0.712731864957415
15	26714664	26721270	2	neutral	AA	49.3964	somatic	0	0.00714348209104779	0.0165433504173068
15	27307002	27309204	1	loss	A	-1	somatic	0	0.0835598441762406	0.270549516385376
15	34437078	34520754	1	loss	A	-1	germline	1	1.543772402967e-20	0
15	34956750	34967760	2	neutral	AA	47.4046	somatic	0	0.652516841989174	0.462554309273231
15	36220698	36242718	2	neutral	AA	100	somatic	0	0.793050089344038	0.956395433494373
15	40076400	40085208	2	neutral	AA	100	somatic	0	0.84336263728149	0.689248826286676
15	41551740	41578164	2	neutral	AA	36.4086	somatic	0	0.0982615936542436	0.214559124411336
15	46437978	46446786	2	neutral	AA	100	somatic	0	0.298850143083748	0.219243237644015
15	47309970	47351808	2	neutral	AA	27.2839	germline	1	0.493721692131807	0.575163981902424
15	50084490	50088894	1	loss	A	-1	somatic	0	0.0254031107444993	0.0572134290980204
15	51912150	51993624	2	neutral	AA	42.9762	somatic	0	0.00622513904515707	0.0101706833166715
15	57687996	57690198	0	loss	-	-1	somatic	0	0.0832785347116564	0.270061306270991
15	64824678	64829082	1	loss	A	100	somatic	0	0.0360103186528351	0.0720244504110972
15	67099344	67112556	2	neutral	AA	100	somatic	0	0.120411684710758	0.188649137979653
15	67187424	67339362	2	neutral	AA	28.1154	somatic	0	0.100223182076897	0.0108568089948289
15	70633554	70644564	2	neutral	AA	54.5679	somatic	0	0.718640020020845	0.899608198922023
15	71415264	71421870	1	loss	A	-1	germline	1	0.0144922486534043	0.0371761212202806
15	72322488	72324690	2	neutral	AA	100	somatic	0	0.655298518499553	0.823934810148752
15	76592166	76603176	1	loss	A	-1	somatic	0	0.00121624744710413	0.00146333356270323
15	77036970	77041374	1	loss	A	-1	somatic	0	0.0193133890304455	0.0500686079566687
15	77409108	77415714	2	neutral	AA	54.5678	somatic	0	0.210412733892807	0.403560642086359
15	79769652	79967832	2	neutral	AA	100	somatic	0	0.366644851458723	0.805851479733348
15	81579696	81599514	2	neutral	AA	100	somatic	0	0.494181839859318	0.906253968414218
15	85281258	85362732	2	neutral	AA	7.34709	somatic	0	0.381346792425324	0.439040740244567
15	85453014	85488246	2	neutral	AA	100	germline	1	0.0492701565465198	0.0492628247369187
15	85602750	85657800	2	neutral	AA	54.5873	somatic	0	0.631006246706075	0.989589928796159
15	88830882	88839690	2	neutral	AA	100	somatic	0	0.421871133028038	0.463355992120652
15	91438050	91440252	0	loss	-	-1	somatic	0	0.0832720644644953	0.270050069089077
15	92131680	92133882	0	loss	-	-1	germline	1	0.0832650554896121	0.270037895860503
15	94038612	94045218	2	neutral	AA	100	germline	1	0.780715417409598	0.735486489960478
15	99030546	99032748	1	loss	A	-1	somatic	0	0.0834107246500371	0.270290806693425
15	99876114	99880518	1	loss	A	-1	germline	1	0.0265753741116786	0.0557757219718299
15	100265868	100547724	2	neutral	AA	12.2767	somatic	0	0.0339437594254433	0.205503279352041
15	100957296	100972710	2	neutral	AA	100	somatic	0	0.812837164910629	0.969218542189799
16	50646	59454	2	neutral	AA	100	somatic	0	0.732758570941445	0.942500311472201
16	845568	847770	4	gain	AAAA	20.5628	germline	1	0.0832914764277213	0.270083781658782
16	1023930	1026132	4	gain	AABB	100	somatic	0	0.0832914764277213	0.270083781658782
16	1845276	1862892	2	neutral	AA	54.5678	somatic	0	0.149948749975193	0.395560772016636
16	4939086	4947894	2	neutral	AA	21.8272	somatic	0	0.330342478591222	0.394277031699212
16	8120976	8136390	2	neutral	AA	100	somatic	0	0.743562877475829	0.831702768900047
16	10318572	10322976	1	loss	A	-1	somatic	0	0.0232636109566155	0.0566452629093361
16	11289654	11294058	2	neutral	AA	100	germline	1	0.0948652018255077	0.164816438211836
16	11893002	11954658	2	neutral	AA	74.4091	somatic	0	0.000615787339922583	0.00475068926491362
16	13414584	13460826	2	neutral	AA	27.3876	somatic	0	0.949551176959973	0.682549330463569
16	19934706	19954524	1	loss	A	-1	germline	1	6.80443998106931e-07	1.85903154537037e-07
16	21557580	21581802	3	gain	AAB	2.58298	somatic	0	9.43284721897538e-09	6.13963657691841e-10
16	22411956	22418562	2	neutral	AA	54.5683	germline	1	0.0747064256090842	0.231322755504077
16	22614540	22698216	3	gain	AAB	0.920253	germline	1	6.19533429849954e-26	0
16	23035122	23039526	1	loss	A	-1	somatic	0	0.0291304074263523	0.0563308058514783
16	24263838	24288060	2	neutral	AA	36.3786	somatic	0	0.304793977148869	0.644411390884385
16	25334010	25373646	2	neutral	AA	27.2893	somatic	0	0.234132621550728	0.0935569511235066
16	27324618	27340032	1	loss	A	-1	germline	1	1.20036464937962e-05	5.35387196110015e-06
16	30867636	30938100	2	neutral	AA	52.7009	somatic	0	7.00151051012757e-05	3.74453018814336e-05
16	31263996	31336662	2	neutral	AA	40.1129	somatic	0	0.0339970800361817	0.0517258561309781
16	31823304	31827708	2	neutral	AA	100	somatic	0	0.532942256110594	0.911652322354409
16	34062738	34064940	31	gain	AAAAAAAAAAAAAAAAAAAABBBBBBBBBBB	35.9274	germline	1	0.0832661337623336	0.270039768638833
16	34069344	34084758	3	gain	AAA	15.5916	somatic	0	0.000162464799850256	0.000305334184702466
16	34084758	34086960	14	gain	AAAAAAAAABBBBB	41.04	germline	1	0.0832666729029362	0.27004070503155
16	34095768	34100172	8	gain	AAAAABBB	1.98467	germline	1	0.0143093662683988	0.0366400197868343
16	34100172	34159626	2	neutral	AA	3.64955	germline	1	0.0958789976853929	0.17987756406887
16	34159626	34203666	2	neutral	AA	-1	somatic	0	0.000821628324126415	0.00192583208744235
16	34203666	34205868	4	gain	AABB	26.6439	somatic	0	0.083293094256773	0.270086591178252
16	34205868	34901700	2	neutral	AA	6.71728	somatic	0	1.11829026524576e-31	0
16	34901700	34903902	4	gain	-	-1	germline	1	0.0832947121112797	0.270089400719055
16	34947942	34954548	4	gain	AAAA	0.537804	germline	1	0.00270281175503331	0.004961848480456
16	34956750	34958952	2	neutral	AA	5.93362	germline	1	0.258219028802758	0.501909732460801
16	36121608	36123810	3	gain	-	-1	germline	1	0.0833152071384176	0.270124990082367
16	36123810	36126012	6	gain	-	-1	germline	1	0.0832903978891617	0.270081908657654
16	36137022	36141426	1	loss	A	-1	somatic	0	0.0293464714733437	0.0565525973315842
16	57291636	57296040	1	loss	A	-1	somatic	0	0.0207916008901137	0.05668902542625
16	57690198	57694602	2	neutral	AA	54.5678	somatic	0	0.830522165088808	0.638402237161207
16	59412162	59425374	2	neutral	AA	100	germline	1	0.254416784939336	0.436624893420629
16	62587446	62602860	2	neutral	AA	36.3786	germline	1	0.262421072222269	0.295537089803698
16	64067190	64159674	2	neutral	AA	36.3786	somatic	0	0.308703313928388	0.448165518800888
16	65320128	65324532	1	loss	A	-1	somatic	0	0.0213821772986414	0.0577887665455978
16	65905860	66000546	2	neutral	AA	100	somatic	0	0.0117067731613093	0.0863602505729333
16	69834228	69865056	2	neutral	AA	100	germline	1	0.0497370319841482	0.0425439567682623
16	70149114	70162326	4	gain	AAAB	4.34003	germline	1	2.21313130364475e-05	1.23057100944735e-05
16	70413354	70446384	2	neutral	AA	36.3786	somatic	0	0.298786904925922	0.178062004096516
16	74108310	74112714	1	loss	A	-1	somatic	0	0.0211572076544914	0.0499195348683052
16	74372550	74374752	5	gain	AAABB	38.7411	germline	1	0.0832914764277213	0.270083781658782
16	75847890	75878718	2	neutral	AA	26.1202	somatic	0	0.788991368043157	0.995316427277621
16	76504086	76510692	1	loss	A	-1	somatic	0	0.00559478559263106	0.00965720777104906
16	80943318	80949924	1	loss	A	-1	somatic	0	0.00453766865810129	0.00727921576112123
16	83598930	83603334	2	neutral	AA	54.5679	somatic	0	0.412601679410627	0.596785281548532
16	88974012	89075304	2	neutral	AA	7.90206	germline	1	0.369359395093871	0.267840310277427
16	89601582	89687460	2	neutral	AA	14.5085	somatic	0	0.0103445966799129	0.0371784209809224
17	4355556	4410606	2	neutral	AA	65.0208	somatic	0	3.07732225478969e-05	0.000237715406374628
17	16816674	16821078	3	gain	AAB	8.07391	somatic	0	0.014320771076071	0.03665924142532
17	19503114	19529538	2	neutral	AA	27.2839	somatic	0	0.145351488320297	0.136459862698532
17	21291138	21304350	4	gain	AABB	0.199609	germline	1	2.21289961545148e-05	1.23026124919656e-05
17	21850446	21859254	4	gain	-	-1	germline	1	0.000532633211124971	0.000671450965884612
17	21859254	21885678	3	gain	-	-1	somatic	0	2.0235706925718e-09	8.33467739269622e-11
17	21967152	21969354	10	gain	-	-1	germline	1	0.0832715252956137	0.270049132672664
17	21975960	21978162	32	gain	-	-1	germline	1	0.0832661337623336	0.270039768638833
17	21978162	22158726	6	gain	AAAABB	0.248693	germline	1	2.01200505916878e-13	4.44089209850063e-16
17	26774118	26809350	3	gain	-	-1	germline	1	2.01480876221764e-09	8.48501269246071e-11
17	26809350	26820360	4	gain	-	-1	germline	1	0.000532639206934209	0.000671450965884612
17	26820360	26822562	3	gain	-	-1	germline	1	0.0833675419143546	0.270215852135082
17	26822562	26826966	5	gain	-	-1	germline	1	0.0143143868006051	0.0366438634089348
17	26826966	26842380	3	gain	-	-1	somatic	0	4.75428454039049e-06	1.88845618331879e-06
17	26842380	26846784	1	loss	A	-1	somatic	0	0.0308225150040128	0.0604940353163013
17	26846784	26864400	3	gain	-	-1	somatic	0	2.39039037895085e-06	1.09590561867545e-05
17	26864400	26866602	5	gain	-	-1	germline	1	0.0832914764277213	0.270083781658782
17	26866602	26868804	7	gain	-	-1	germline	1	0.0832796131257758	0.270063179167833
17	26868804	26877612	3	gain	-	-1	somatic	0	0.000535819821479004	0.000679953033311032
17	29484780	29489184	3	gain	AAB	69.7508	somatic	0	0.0143184724476115	0.0366515517114778
17	31827708	31860738	2	neutral	AA	100	somatic	0	0.0136056148942251	0.00987262238498088
17	47316576	47602836	2	neutral	AA	27.2882	somatic	0	0.623339698625413	0.807044453442001
17	57610926	57613128	0	loss	-	-1	somatic	0	0.0832871623413615	0.270076289711149
17	65883840	66099636	2	neutral	AA	29.4202	somatic	0	0.577769652364856	0.190093386651036
18	2356140	2380362	2	neutral	AA	100	somatic	0	0.767118151676162	0.946721970882809
18	5306820	5309022	1	loss	A	-1	somatic	0	0.0833092739473599	0.270114687546249
18	5324436	5326638	0	loss	-	-1	somatic	0	0.0832839268953775	0.270070670849982
18	11972274	12093384	2	neutral	AA	2.36674	somatic	0	0.883703732046562	0.88262026809872
18	21084150	21092958	2	neutral	AA	100	somatic	0	0.702495543198979	0.781807802496975
18	22722438	22735650	2	neutral	AA	100	somatic	0	0.506630016819396	0.294015343206575
18	23962164	24012810	2	neutral	AA	46.3722	somatic	0	0.244407623915907	0.182657875564861
18	29594880	29597082	0	loss	-	-1	somatic	0	0.0832887801025345	0.270079099173732
18	39151560	39155964	2	neutral	AA	100	somatic	0	0.953377075882694	0.999027007713508
18	40963806	40972614	2	neutral	AA	100	somatic	0	0.114990897072498	0.101218840551648
18	41283096	41289702	1	loss	A	-1	germline	1	0.0290740008609005	0.0560374823075847
18	41346954	41351358	1	loss	A	-1	somatic	0	0.0292638972707658	0.0569965533383107
18	44542056	44546460	1	loss	A	-1	somatic	0	0.0293994272860529	0.0604892881043022
18	45766368	45828024	2	neutral	AA	100	somatic	0	0.0419082084486244	0.139449708297782
18	46191354	46193556	1	loss	A	-1	somatic	0	0.12636726799845	0.338339061771968
18	47849460	47853864	1	loss	A	-1	somatic	0	0.0325824807228947	0.0742442123257052
18	51449730	51451932	1	loss	A	-1	somatic	0	0.0851743558568905	0.273338278467441
18	53394096	53427126	2	neutral	AA	97.1497	somatic	0	0.853069709839901	0.820209719134547
18	53427126	53429328	1	loss	A	-1	somatic	0	0.0838863890650876	0.271115369194588
18	56261100	56263302	1	loss	A	-1	somatic	0	0.0896099557674532	0.280889175331395
18	57278424	57282828	1	loss	A	-1	somatic	0	0.020379880970887	0.055237788986203
18	57463392	57476604	2	neutral	AA	85.4169	germline	1	0.404307713515821	0.209721621821045
18	64542822	64547226	1	loss	A	-1	somatic	0	0.0269418376175986	0.0688533906751314
18	71978976	71996592	2	neutral	AA	36.8793	somatic	0	0.171029545391193	0.421831876059079
18	79520826	79523028	1	loss	A	-1	somatic	0	0.0837579225334508	0.270892866487695
19	1374048	1422492	2	neutral	AA	21.4842	somatic	0	0.792940568436466	0.792934246013824
19	7449366	7451568	8	gain	AAAAABBB	4.14492	germline	1	0.0832758387258491	0.270056624070387
19	8856444	8918100	2	neutral	AA	2.63941	germline	1	0.877844974578144	0.829719499520454
19	15933672	15935874	4	gain	AAAB	11.1382	somatic	0	0.083293094256773	0.270086591178252
19	17763534	17792160	2	neutral	AA	68.2852	somatic	0	0.045528857328599	0.126834055083429
19	18974634	19047300	2	neutral	AA	21.8677	somatic	0	0.289372471207352	0.552086927483681
19	21209664	21586206	2	neutral	AA	0.313297	somatic	0	0.000278560101058097	0.000151095032632997
19	23279544	23283948	1	loss	A	-1	somatic	0	0.0999788900801186	0.327785214014081
19	24329898	24387150	4	gain	AABB	0.24814	germline	1	1.03874536620081e-18	0
19	24387150	27243144	4	gain	AABB	-1	somatic	0	2.04192121489903e-07	3.06701143371058e-08
19	27291588	27324618	2	neutral	AA	5.72587	somatic	0	9.19756133749135e-05	0.000202287887858144
19	27324618	27331224	4	gain	AABB	-1	somatic	0	NA	NA
19	27337830	27340032	5	gain	AAABB	1.93028	somatic	0	0.0832914764277213	0.270083781658782
19	27344436	27397284	6	gain	AAAABB	0.0824509	germline	1	4.53993141436772e-16	0
19	27397284	27399486	5	gain	AAABB	1.97287	germline	1	0.0832914764277213	0.270083781658782
19	33893184	33930618	2	neutral	AA	27.2839	somatic	0	0.117432606662922	0.272594023534182
19	39100914	39127338	2	neutral	AA	100	germline	1	0.000782879525616431	0.00453709407934566
19	41932686	42126462	2	neutral	AA	38.9789	somatic	0	0.000153862361006545	5.86919410757725e-05
19	50170368	50194590	2	neutral	AA	16.0026	somatic	0	0.00186953612481008	0.00129726509380501
20	63858	66060	8	gain	-	-1	germline	1	0.0832758387258491	0.270056624070387
20	66060	68262	3	gain	-	-1	germline	1	0.083298487204122	0.270095956397222
20	1272756	1279362	2	neutral	AA	100	somatic	0	0.9490410984213	0.992565656808366
20	1583238	1614066	1	loss	A	-1	germline	1	3.52742887436566e-07	3.76046545014219e-08
20	1838670	1847478	2	neutral	AA	100	somatic	0	0.848550464618026	0.900644307668809
20	5031570	5038176	1	loss	A	-1	somatic	0	0.0143248583303975	0.036672573606478
20	6154590	6205236	2	neutral	AA	36.5314	somatic	0	0.658182442149943	0.838373160630681
20	7451568	7482396	2	neutral	AA	36.5684	somatic	0	0.893861574946991	0.902789970182541
20	13403574	13575330	2	neutral	AA	100	somatic	0	0.00490321550194853	0.0101893223916998
20	18307428	18439548	2	neutral	AA	100	somatic	0	0.296039147491156	0.556212664600333
20	21304350	21308754	1	loss	A	-1	somatic	0	0.0146092023629272	0.0375344428980455
20	22671792	22689408	2	neutral	AA	64.8986	somatic	0	0.160517637505599	0.273399653930375
20	23598834	23631864	2	neutral	AA	54.5687	somatic	0	0.509568557766857	0.814556595143706
20	26285274	26309496	2	neutral	AA	4.25067	somatic	0	0.0564262286004564	0.0144952572931503
20	26316102	26322708	1	loss	A	-1	somatic	0	0.0143486785185742	0.0367174726895565
20	28773534	28788948	7	gain	-	-1	germline	1	0.00053234548623075	0.000671404011784782
20	28804362	28881432	10	gain	-	-1	somatic	0	4.32441473352744e-08	4.13009837441081e-09
20	28883634	28896846	10	gain	-	-1	somatic	0	NA	NA
20	28896846	28899048	13	gain	-	-1	germline	1	0.0832672120463666	0.270041641426637
20	28899048	29205126	10	gain	-	-1	somatic	0	0.014314557015363	0.0366443759185349
20	29205126	29260176	1	loss	A	-1	germline	1	0.0106498569659883	0.00417434973555642
20	29262378	29264580	17	gain	-	-1	germline	1	0.0832661337623336	0.270039768638833
20	29264580	29279994	3	gain	-	-1	somatic	0	0.00411998533114024	0.000518244976251858
20	29279994	29286600	1	loss	A	-1	somatic	0	0.00732597531605314	0.0102355555935686
20	29328438	29330640	9	gain	-	-1	germline	1	0.0832726036362048	0.270051005507873
20	29407710	29412114	5	gain	-	-1	germline	1	0.0143143868006051	0.0366438634089348
20	29889948	29894352	5	gain	-	-1	germline	1	0.0143143868006051	0.0366438634089348
20	30138774	30169602	1	loss	A	-1	germline	1	3.03570675491447e-06	3.71217501571319e-06
20	30812586	30814788	8	gain	-	-1	germline	1	0.0832758387258491	0.270056624070387
20	30940302	30942504	6	gain	-	-1	germline	1	0.0832866230932937	0.270075353228369
20	31072422	31074624	37	gain	-	-1	germline	1	0.0832661337623336	0.270039768638833
20	31164906	31167108	5	gain	-	-1	somatic	0	0.0832914764277213	0.270083781658782
20	31167108	31184724	3	gain	-	-1	somatic	0	1.20959006012025e-06	5.76484489478446e-07
20	31184724	31186926	39	gain	-	-1	germline	1	0.0832661337623336	0.270039768638833
20	31186926	31191330	5	gain	-	-1	germline	1	0.0143143016938956	0.0366438634089348
20	31191330	31239774	3	gain	AAA	3.46241	somatic	0	4.80067758081217e-06	1.97978680749333e-06
20	31239774	31241976	63	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBBBBBBBB	100	germline	1	0.0832661337623336	0.270039768638833
20	31241976	31246380	3	gain	AAA	3.94447	germline	1	0.0143232403358675	0.0366671889458293
20	35584320	35588724	2	neutral	AA	100	somatic	0	0.740963819821065	0.717085366762184
20	38929158	39063480	2	neutral	AA	19.8619	somatic	0	0.0689291069239396	0.0509502699762351
20	39992724	40168884	2	neutral	AA	100	somatic	0	0.0010532556060087	0.0257395386019202
20	43128372	43156998	2	neutral	AA	100	somatic	0	0.0952015321609457	0.0824901380623146
20	43678872	43696488	2	neutral	AA	12.1263	somatic	0	0.893420836995711	0.729593003599919
20	47349606	47391444	2	neutral	AA	54.5678	somatic	0	0.000163737360497166	0.00121055078182586
20	49754190	49809240	2	neutral	AA	100	germline	1	0.694438379864578	0.783786395098622
20	51896736	51927564	2	neutral	AA	27.2839	germline	1	0.000151872917571601	0.000251032029932707
20	53121048	53138664	2	neutral	AA	100	somatic	0	0.19740396859986	0.505221330633844
20	53867526	53874132	2	neutral	AA	100	somatic	0	0.250102052980677	0.55343506186166
20	54030474	54041484	1	loss	A	-1	somatic	0	0.000326956470644505	0.000266320472563253
20	57009780	57018588	2	neutral	AA	21.8419	somatic	0	0.0282992867914148	0.0313230626448868
20	59084064	59097276	2	neutral	AA	55.0709	somatic	0	0.962748303352273	0.804733182362772
20	61534890	61587738	2	neutral	AA	100	somatic	0	0.000758528325084239	0.0173635908834268
20	61862988	61867392	2	neutral	AA	54.5678	germline	1	0.324908383663574	0.313489258019876
20	62195490	62204298	2	neutral	AA	100	somatic	0	0.384688801573646	0.561981055474824
20	62605062	62609466	2	neutral	AA	100	germline	1	0.541662801249691	0.768032415407865
20	63677436	63728082	2	neutral	AA	5.77082	somatic	0	0.491518876195678	0.623028132961244
21	10690710	10692912	51	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBBBB	100	germline	1	0.0832661337623336	0.270039768638833
21	10692912	10739154	7	gain	AAAAABB	0.326877	germline	1	2.07393547828349e-15	0
21	16325628	16338840	2	neutral	AA	54.5678	somatic	0	0.481894648999789	0.72683398904542
21	20287026	20289228	1	loss	A	-1	somatic	0	0.0833443386773892	0.270175570328726
21	20471994	20483004	2	neutral	AA	100	somatic	0	0.769843977355174	0.868460648840369
21	20586498	20588700	0	loss	-	-1	germline	1	0.0832903978891617	0.270081908657648
21	24576522	24587532	2	neutral	AA	100	somatic	0	0.5380591440071	0.824118001923948
21	24922236	24931044	2	neutral	AA	100	somatic	0	0.620514516181647	0.903566280356153
21	31906980	31929000	2	neutral	AA	27.3183	somatic	0	0.105100857748336	0.0948176311664773
21	31929000	31948818	2	neutral	AA	18.1893	somatic	0	0.363234220001066	0.414119274459868
21	32501520	32527944	2	neutral	AA	36.3786	somatic	0	0.85079088844289	0.864361365550944
21	36004902	36161244	2	neutral	AA	33.2461	somatic	0	0.00184089557650374	0.00060854382109421
21	38046156	38076984	2	neutral	AA	100	somatic	0	0.153868953637401	0.451071959498357
21	39259458	39305700	2	neutral	AA	100	germline	1	0.0995757866254842	0.0125475117839423
21	41804970	41807172	4	gain	AAAA	11.2457	germline	1	0.0832947121112797	0.270089400719055
21	43335360	43337562	4	gain	AAAB	19.7624	germline	1	0.0832941728236158	0.270088464203084
21	45425058	45497724	2	neutral	AA	57.7192	somatic	0	0.00956645519565539	0.0366710024563162
21	45966750	45971154	1	loss	A	-1	somatic	0	0.0256485495942067	0.0560567492183506
22	11619954	11630964	4	gain	AABB	24.2836	germline	1	0.0027024239582684	0.0049607035616599
22	12692328	12694530	12	gain	AAAAAAAAABBB	100	germline	1	0.0832677511926249	0.270042577824094
22	16559040	16589868	2	neutral	AA	3.61475	germline	1	0.0323526297613518	0.0255947577553999
22	17875836	17878038	3	gain	AAB	4.41844	somatic	0	0.0832990265144131	0.270096892932155
22	29119248	29121450	5	gain	AAABB	8.48689	germline	1	0.0832914764277213	0.270083781658782
22	32144796	32146998	1	loss	A	-1	somatic	0	0.0855699116643701	0.274018139872988
22	32690892	32708508	2	neutral	AA	54.5678	somatic	0	0.0786605704945279	0.15741522329561
22	34467906	34470108	1	loss	A	-1	somatic	0	0.0833346272477905	0.270158709478597
22	40175490	40252560	2	neutral	AA	100	somatic	0	0.168497224894059	0.102158977315153
22	42509610	42551448	3	gain	AAB	2.07191	germline	1	2.25086644850524e-07	5.05840589415385e-08
22	42632922	42698982	2	neutral	AA	45.8044	somatic	0	0.0210366120917744	0.0818048413941282
22	45554976	45574794	2	neutral	AA	100	germline	1	0.928015207656161	0.751270859428565
22	46799106	46807914	2	neutral	AA	54.5678	somatic	0	0.399508630451119	0.443664801469748
22	49721160	49804836	2	neutral	AA	13.7052	somatic	0	0.0800767119346241	0.0987043342962346
22	50641596	50646000	4	gain	AAAA	12.3163	germline	1	0.014314557015363	0.0366443759185349
X	3523200	3525402	2	gain	-	-1	somatic	0	0.859661960490437	0.92177935183566
X	26082690	26087094	0	loss	-	-1	somatic	0	0.0143352514001959	0.0367179860997662
X	56443866	56472492	3	gain	AAB	24.0873	germline	1	4.61444609344721e-06	1.67095226244474e-06
X	56472492	56487906	2	gain	AA	100	germline	1	0.457146897390786	0.432991528077467
X	58487322	58491726	2	gain	AA	36.7117	somatic	0	0.040575250476959	0.0929730582056386
X	78267888	78270090	2	gain	-	-1	germline	1	0.0854534016973701	0.27381944424345
X	108772194	108776598	0	loss	-	-1	somatic	0	0.0143080050359019	0.0366366889330115
X	126775746	126780150	0	loss	-	-1	somatic	0	0.0143177914350174	0.0366623177060662
X	127462770	127469376	0	loss	-	-1	germline	1	0.0143128549481258	0.0366418134332473
Y	10655478	10657680	9	gain	-	-1	germline	1	0.0832731428107422	0.270051941929033
Y	10659882	10754568	3	gain	-	-1	germline	1	9.92550818236599e-07	2.3659161396683e-07
Y	10754568	10756770	6	gain	-	-1	germline	1	0.0832903978891617	0.270081908657654
Y	10756770	10758972	2	gain	-	-1	germline	1	0.229393166558728	0.469995621757185
Y	10758972	10763376	8	gain	-	-1	germline	1	0.0143111530594176	0.0366433509056062
Y	10763376	10774386	3	gain	-	-1	germline	1	0.00430750087184141	0.00351752861944332
Y	10774386	10776588	6	gain	-	-1	germline	1	0.0832903978891617	0.270081908657654
Y	10776588	10794204	3	gain	-	-1	germline	1	1.27908584427188e-05	5.3285146583093e-05
Y	10794204	10803012	5	gain	-	-1	germline	1	0.000532648200765988	0.000671526098847575
Y	10803012	10825032	2	gain	-	-1	germline	1	0.118096921348181	0.0604322697616734
Y	10825032	10827234	4	gain	-	-1	germline	1	0.0832914764277213	0.270083781658782
Y	10827234	10921920	2	gain	-	-1	somatic	0	0.0163205111863275	7.34650850686691e-06
Y	10924122	10928526	4	gain	-	-1	germline	1	0.0143148123408477	0.036645144694694
Y	10928526	10935132	2	gain	-	-1	germline	1	0.534219898809508	0.373957863334856
Y	10935132	10939536	4	gain	-	-1	germline	1	0.0143154932284472	0.0366471948334408
Y	10939536	10985778	2	gain	-	-1	germline	1	0.0262593537606579	0.0018854444647709
Y	10985778	10990182	10	gain	-	-1	germline	1	0.0143103872677398	0.0366438634089348
Y	10990182	10998990	2	gain	-	-1	germline	1	0.221021800732472	0.27720531008782
Y	10998990	11001192	9	gain	-	-1	germline	1	0.0832731428107422	0.270051941929033
Y	11003394	11005596	3	gain	-	-1	germline	1	0.0833092739473599	0.270114687546256
Y	11005596	11012202	2	gain	-	-1	germline	1	0.00986446121670627	0.0124851329687498
Y	11014404	11016606	5	gain	-	-1	germline	1	0.0832914764277213	0.270083781658782
Y	11016606	11040828	2	gain	AA	20.7453	germline	1	0.981289602938376	0.38516153717429
Y	11291856	11307270	33	gain	AAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBB	4.71205	germline	1	4.59355036649899e-06	1.66328134121319e-06
Y	11307270	11333694	10	gain	AAAAAAABBB	1.12062	germline	1	2.21015769432335e-05	1.22987415396292e-05
Y	11529672	11534076	16	gain	AAAAAAAAAAABBBBB	6.74952	germline	1	0.0143066439176351	0.0366325897843126
Y	11686014	11688216	3	gain	AAA	16.0595	germline	1	0.083298487204122	0.270095956397222
Y	11688216	11690418	8	gain	AAAAABBB	100	germline	1	0.0832758387258491	0.270056624070387
Y	11716842	11719044	5	gain	AAAAA	4.72205	germline	1	0.0832914764277213	0.270083781658782
Y	11721246	11723448	47	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBB	100	germline	1	0.0832661337623336	0.270039768638833
Y	11723448	11745468	2	gain	AA	4.46957	germline	1	0.841542907738539	0.103702555366379
Y	11745468	11749872	8	gain	AAAAABBB	6.50144	germline	1	0.0143099618435383	0.0366379699992827
Y	26637594	26639796	6	gain	AAAABB	6.9595	germline	1	0.0832866230932937	0.270075353228369
Y	26639796	26655210	2	gain	AA	7.19081	somatic	0	0.134966445401981	0.211508659687104
Y	56827014	56838024	31	gain	AAAAAAAAAAAAAAAAAAAABBBBBBBBBBB	100	germline	1	0.000107523726209773	9.08117666760244e-05
Y	56838024	56851236	6	gain	AAAABB	2.38745	germline	1	0.000532423397418938	0.000671404011784782
