chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	16604860	16635566	9	gain	-	-1	germline	1	0.000107569438217197	9.08415251947847e-05
1	16720598	16725322	5	gain	-	-1	germline	1	0.0143114366248173	0.0366398334249386
1	16904834	16942626	3	gain	-	-1	germline	1	4.36029231680894e-08	4.21122803295759e-09
1	31431134	31433496	6	gain	-	-1	germline	1	0.08327953044315	0.270063002214892
1	54625974	54630698	0	loss	-	-1	germline	1	0.0143131682773826	0.0366420288921437
1	125079710	125082072	12	gain	-	-1	germline	1	0.0832697133320416	0.270045952320127
1	125162380	125164742	5	gain	-	-1	germline	1	0.0832818404878943	0.27006701406903
1	143543464	143737148	1	loss	A	-1	germline	1	9.64834995401536e-38	0
1	151397114	151493956	2	neutral	AA	100	somatic	0	2.30921635038964e-08	3.72578357055176e-09
1	152108076	152157678	2	neutral	AA	57.3285	somatic	0	0.0376888879274174	0.109139613632828
1	158683884	158695694	2	neutral	AA	54.5678	somatic	0	0.245525541395078	0.230594917037491
1	163053584	163060670	2	neutral	AA	100	somatic	0	0.349293387934503	0.700661868951947
1	164952632	164978614	2	neutral	AA	100	somatic	0	0.87160369608938	0.899182951667439
1	172180352	172213420	2	neutral	AA	100	somatic	0	0.00066928456687036	0.00399344251239719
1	173401506	173418040	2	neutral	AA	100	somatic	0	0.525406060657653	0.441399953630842
1	178194004	178215262	2	neutral	AA	100	somatic	0	0.770217548248698	0.867783644469702
1	179327764	179389176	2	neutral	AA	100	somatic	0	2.67113222992867e-06	2.27018298936121e-05
1	179922988	179946608	2	neutral	AA	100	germline	1	0.0863849679729578	0.128679632518327
1	181129970	181141780	2	neutral	AA	73.8237	somatic	0	0.639672715417928	0.858068775956424
1	182726682	182745578	2	neutral	AA	54.5678	somatic	0	0.805549121380366	0.488465838882189
1	188657664	188711990	2	neutral	AA	37.0142	somatic	0	0.781651728925356	0.807777964795224
1	189793786	189812682	2	neutral	AA	27.2901	somatic	0	0.950890668628262	0.999463064317555
1	190651192	190658278	2	neutral	AA	54.5678	somatic	0	0.787965142506555	0.957726499683999
1	197928514	197940324	2	neutral	AA	54.5678	somatic	0	0.857775416077502	0.46681278065147
1	201969896	201988792	2	neutral	AA	54.5678	somatic	0	0.00238580862866803	0.0172229644677255
1	202810768	202834388	2	neutral	AA	36.3786	somatic	0	0.960251433394178	0.905851692547125
1	203004452	203013900	2	neutral	AA	100	somatic	0	0.1559598043157	0.239140350763232
1	205765630	205786888	2	neutral	AA	18.1968	somatic	0	0.292814502894308	0.365179264561053
1	220008490	220060454	2	neutral	AA	19.1367	somatic	0	6.77352028401222e-06	4.32283334284023e-06
1	224012080	224014442	8	gain	AAAAAAAA	2.26208	germline	1	0.0832754879897432	0.270055981574827
1	230984704	231013048	2	neutral	AA	2.02825	germline	1	0.434782945057539	0.587160286677117
1	234775714	234782800	7	gain	AAAAABB	2.31175	germline	1	0.00270104943326191	0.00495909193172295
1	236096072	236098434	5	gain	AAABB	100	germline	1	0.0832818404878943	0.27006701406903
1	248586328	248631206	1	loss	A	-1	germline	1	3.94187533354342e-12	3.5527136788005e-15
2	3179252	3181614	7	gain	-	-1	germline	1	0.0832777979436544	0.270059993352836
2	17216618	17226066	2	neutral	AA	70.3225	somatic	0	0.431592779155229	0.430316246374197
2	29692702	29697426	2	neutral	AA	54.5678	somatic	0	0.149040593967294	0.356761818889183
2	33056190	33084534	2	neutral	AA	25.2179	somatic	0	0.442334849809231	0.365418098057863
2	34468666	34504096	1	loss	A	-1	germline	1	3.23367026665479e-09	1.92706806068088e-09
2	35746508	35767766	1	loss	A	-1	germline	1	5.83883770660081e-05	4.36437366643228e-05
2	49271320	49283130	2	neutral	AA	100	somatic	0	0.692852021094266	0.922231344714971
2	55388900	55419606	2	neutral	AA	54.5678	somatic	0	0.00642318044025263	0.0167240399224008
2	56737602	56815548	2	neutral	AA	44.7876	somatic	0	0.018117746443302	0.0117310738111861
2	67836640	67857898	2	neutral	AA	54.5707	somatic	0	0.438108242261708	0.557277414145208
2	73158226	73222000	2	neutral	AA	13.5978	somatic	0	0.0184356909487981	0.0404339592728699
2	75210804	75250958	2	neutral	AA	27.392	somatic	0	0.838229520656364	0.62988182003725
2	75921766	75943024	2	neutral	AA	36.3786	somatic	0	0.728348227559006	0.515700239212707
2	88943472	88955282	2	neutral	AA	0.777104	somatic	0	0.00979837979815096	0.0117985843636245
2	88955282	89004884	2	neutral	AA	14.15	somatic	0	0.00120592112088909	0.00467902809633303
2	89772534	89793792	4	gain	AAAB	64.5622	germline	1	2.03857922806332e-07	3.05283078816387e-08
2	89793792	89824498	4	gain	AAAA	0.954086	somatic	0	1.97790803143428e-09	7.56453788497424e-11
2	89824498	89843394	25	gain	AAAAAAAAAAAAAAAAABBBBBBBB	38.1651	germline	1	9.63753384783133e-07	2.25225496253145e-07
2	89843394	89850480	4	gain	AAAB	5.61768	germline	1	0.00270156422469435	0.00495953767274104
2	91411762	91414124	5	gain	-	-1	germline	1	0.083280685459034	0.270065008136523
2	97881280	97945054	2	neutral	AA	100	somatic	0	0.209984534213243	0.266895947714313
2	101069980	101079428	2	neutral	AA	83.4783	somatic	0	0.131495877733228	0.300079173253484
2	104669668	105168050	2	neutral	AA	57.2794	somatic	0	0.000112135547887984	0.00385844233747035
2	105923890	105938062	2	neutral	AA	63.6866	somatic	0	0.54447143553562	0.531689286824968
2	117887420	118071656	2	neutral	AA	36.3795	somatic	0	0.00512593927270813	0.00579119677293816
2	124444332	124519916	2	neutral	AA	54.5696	somatic	0	0.089548992767617	0.166012082670558
2	124661636	124682894	2	neutral	AA	70.2665	somatic	0	0.241950108871624	0.574609032868797
2	129425790	129503736	2	neutral	AA	100	somatic	0	0.00127934160573648	0.0102556733803268
2	131487816	132564888	2	neutral	AA	1.70871	somatic	0	0.00334090191157475	0.0291662068657893
2	134560778	134815874	2	neutral	AA	21.8271	somatic	0	0.412693701258487	0.248218514426832
2	134815874	135874050	2	neutral	AA	100	somatic	0	1.29932889996534e-11	1.0769163338864e-14
2	137971506	137978592	2	neutral	AA	100	somatic	0	0.436858732018626	0.725089063788173
2	140775200	140779924	2	neutral	AA	100	somatic	0	0.469043082008677	0.866683856655222
2	146049546	146158198	2	neutral	AA	100	somatic	0	0.332021729481849	0.289879088545066
2	148085590	148137554	2	neutral	AA	100	somatic	0	0.759844247879822	0.645147517671137
2	160424678	160460108	2	neutral	AA	100	somatic	0	0.234728253484076	0.5714291250721
2	162848090	163145702	2	neutral	AA	98.0439	somatic	0	7.04818528276506e-07	3.20284070010057e-06
2	169464052	169468776	1	loss	A	-1	germline	1	0.0169424892589049	0.0446588129027535
2	174601402	174636832	2	neutral	AA	54.5679	somatic	0	0.000215849801237998	0.00234176638624806
2	187311324	187316048	1	loss	A	54.5873	somatic	0	0.0332596158907688	0.064535395757487
3	57009232	57077730	2	neutral	AA	27.3036	somatic	0	0.230167291374611	0.207118632810194
3	65262060	65269146	3	gain	AAB	3.12567	germline	1	0.00270405641763549	0.00496338371370497
3	69329424	69355406	2	neutral	AA	100	somatic	0	0.0243249965156183	0.0340332668675495
3	71752836	71776456	2	neutral	AA	100	somatic	0	0.191636331100486	0.531126585004376
3	75723358	75931214	2	neutral	AA	0.329125	germline	1	0.0178403627660131	0.0122920069737033
3	90398464	90448066	2	neutral	AA	1.15876	somatic	0	0.170087972053269	0.0889668781749917
3	90667732	90712610	1	loss	A	-1	germline	1	2.35242114359717e-12	4.20774526332934e-14
3	104535034	104553930	2	neutral	AA	56.0649	somatic	0	0.0416297617115215	0.149247153755259
3	123693216	123716836	2	neutral	AA	54.5678	germline	1	0.398908016936353	0.602550629886079
3	143919022	143956814	2	neutral	AA	54.5678	somatic	0	0.197575752075659	0.183666001458208
3	154290564	154401578	2	neutral	AA	22.9496	somatic	0	0.181941523957873	0.208097485390353
3	155762090	155795158	3	gain	AAB	4.22237	germline	1	7.22041796819875e-10	5.35024535786022e-09
3	162413482	162425292	1	loss	A	-1	germline	1	0.000191103750143118	0.000186246267592338
3	162793764	162909502	1	loss	A	-1	germline	1	8.46478611149419e-30	0
3	176169770	176195752	1	loss	A	-1	germline	1	3.46329005394259e-08	4.06783606798911e-09
3	195110648	195115372	2	neutral	AA	100	somatic	0	0.784915944205802	0.929664181686834
4	20308476	20320286	2	neutral	AA	100	somatic	0	0.735067921305377	0.962125933247234
4	36155134	36181116	2	neutral	AA	54.5873	somatic	0	0.0920672742851526	0.146294269608268
4	39667428	39676876	1	loss	A	-1	somatic	0	0.0342191500964996	0.0661863131246366
4	39676876	39771356	2	neutral	AA	62.7716	somatic	0	6.09044281614478e-14	6.21724893790088e-15
4	40293358	40295720	5	gain	AAABB	6.36567	germline	1	0.0832824180071906	0.270068017039362
4	43101776	43115948	2	neutral	AA	100	somatic	0	0.27458559918077	0.138473482407716
4	49084722	49089446	2	neutral	AA	100	somatic	0	0.226224308206012	0.4348415134399
4	70619076	70623800	1	loss	A	-1	germline	1	0.0145646491214186	0.0373851363041897
4	71030064	71046598	2	neutral	AA	54.5679	somatic	0	0.593021668564732	0.803403491682205
4	71854402	71859126	2	neutral	AA	100	somatic	0	0.331652877515746	0.505408312179366
4	82832978	83050282	2	neutral	AA	12.181	somatic	0	2.797103399881e-10	2.92163626625097e-10
4	87001908	87027890	2	neutral	AA	36.3786	somatic	0	0.197894171621193	0.514155837705858
4	87164886	87427068	2	neutral	AA	87.3756	somatic	0	6.15390561956838e-07	1.96832289078852e-06
4	93060438	93147832	2	neutral	AA	100	somatic	0	0.798696701367914	0.430403507842901
4	99626798	99744898	2	neutral	AA	100	somatic	0	0.0154518205032812	0.142202524641685
4	121359560	121369008	1	loss	A	-1	germline	1	0.00124929958663619	0.00168649571342716
4	159777490	159803472	2	neutral	AA	21.8272	somatic	0	0.609684668572239	0.848944149190835
4	160514434	160634896	2	neutral	AA	49.2681	somatic	0	0.94891901963738	0.714899760882326
4	167704362	167905132	2	neutral	AA	49.2872	somatic	0	0.068782068294518	0.171312883383116
4	177757034	177837342	2	neutral	AA	37.5839	somatic	0	0.00251647943755993	0.0129833879938139
4	179979676	180010382	2	neutral	AA	100	somatic	0	0.0610264892015637	0.204876291055521
4	180107224	180196980	2	neutral	AA	100	somatic	0	0.609291199051915	0.68497330286173
5	413350	415712	5	gain	AAABB	13.6911	germline	1	0.0832824180071906	0.270068017039362
5	415712	427522	2	neutral	AA	100	somatic	0	0.937671454173334	0.780184135647353
5	3186338	3202872	2	neutral	AA	40.8328	somatic	0	0.000461075970897011	0.000474894120295444
5	3323334	3325696	4	gain	AABB	46.4625	somatic	0	0.0832853056523343	0.270073031931805
5	6011290	6016014	2	neutral	AA	100	somatic	0	0.670618373063248	0.697097324729618
5	6538016	6547464	2	neutral	AA	54.5678	somatic	0	0.0583273362965275	0.0979805476760284
5	8701608	8748848	1	loss	A	-1	germline	1	1.51830789252896e-09	2.84573475894945e-11
5	9502326	9507050	2	neutral	AA	100	somatic	0	0.770762299211849	0.94850363378783
5	12809126	12820936	1	loss	A	-1	germline	1	0.000549004924337031	0.000359507064158326
5	14967994	15005786	2	neutral	AA	100	somatic	0	0.775516785849054	0.644563908510445
5	15780522	15815952	2	neutral	AA	54.8448	somatic	0	0.147935669718928	0.434736624220452
5	22670476	22698820	2	neutral	AA	71.4936	germline	1	0.839178871189827	0.784597547608861
5	24536456	24545904	2	neutral	AA	100	somatic	0	0.471054422215147	0.830708220903597
5	25925312	26057584	2	neutral	AA	100	somatic	0	0.689841735904407	0.61340447683032
5	46321182	50768828	2	neutral	AA	100	somatic	0	0.0664541495211616	0.0114839916322945
5	51085336	51224694	2	neutral	AA	27.6865	somatic	0	1.3389246038023e-07	9.22932049440828e-06
5	51397120	51404206	2	neutral	AA	100	somatic	0	0.751395843730076	0.979236419387698
5	51430188	51654578	2	neutral	AA	40.0374	somatic	0	6.85621040951836e-05	0.00112049312999452
5	52023050	52039584	2	neutral	AA	100	germline	1	0.689674450596521	0.821132579670854
5	67368964	67383136	2	neutral	AA	100	somatic	0	0.226496167412809	0.390126279257664
5	83673850	83789588	2	neutral	AA	60.2407	somatic	0	0.153335187971091	0.151212352033552
5	92344752	92347114	0	loss	-	-1	germline	1	0.0832876158268444	0.270077043894685
5	99385874	99546490	2	neutral	AA	100	somatic	0	0.390386044012816	0.562653061041642
5	101072342	101242406	2	neutral	AA	46.0034	somatic	0	0.801501056542627	0.716978717407379
5	120759612	120771422	2	neutral	AA	57.1973	germline	1	0.0975760761818267	0.081561130282892
5	121694964	121706774	2	neutral	AA	36.3786	somatic	0	0.538438141775343	0.491271434289178
5	129217934	129267536	2	neutral	AA	100	somatic	0	0.0406952429122284	0.0370330937116647
5	131657880	131667328	2	neutral	AA	100	somatic	0	0.55855882348152	0.568590591119472
5	137518002	137520364	0	loss	-	-1	germline	1	0.0833084097333738	0.270113153518377
5	140718512	140725598	1	loss	A	-1	germline	1	0.00404411045190616	0.00947718661528973
5	141174378	141176740	4	gain	AAAA	56.8646	somatic	0	0.0832853056523343	0.270073031931805
5	141800308	141819204	2	neutral	AA	36.4047	somatic	0	0.217767090422275	0.448454088964821
5	143482052	143486776	1	loss	A	-1	germline	1	0.020122982604595	0.0473614561375942
5	145740124	145742486	0	loss	-	-1	germline	1	0.0832749105093753	0.270054978637107
5	145759020	145801536	2	neutral	AA	100	somatic	0	0.369056919452281	0.811983856406465
5	150357834	150388540	2	neutral	AA	100	somatic	0	0.0676725923894439	0.153347292864031
5	152696214	152698576	0	loss	-	-1	somatic	0	0.0833130311725327	0.270121178357736
5	153707150	153782734	2	neutral	AA	100	somatic	0	0.000545208451976278	9.05110089849392e-05
5	156050254	156062064	1	loss	A	-1	germline	1	0.000287371492050031	0.000250124203881041
5	161806448	161952892	2	neutral	AA	76.0084	somatic	0	0.143448694277772	0.0606620241553953
5	164236946	164253480	2	neutral	AA	15.4173	somatic	0	0.595438053076195	0.445249543907542
5	168975118	169060150	2	neutral	AA	63.2441	somatic	0	1.81667965236216e-06	5.70542181447253e-05
5	171214294	171226104	2	neutral	AA	54.5678	somatic	0	0.492377519695965	0.788973140204252
5	174067590	174119554	2	neutral	AA	17.2692	somatic	0	0.20899490887523	0.746937348049191
5	178293208	178314466	2	neutral	AA	100	somatic	0	0.120743687592788	0.417965253815294
6	255096	382644	3	gain	AAB	0.355582	germline	1	3.97136816576679e-35	0
6	968420	994402	2	neutral	AA	100	somatic	0	0.528937457649656	0.84431520026075
6	5000354	5012164	2	neutral	AA	21.8631	somatic	0	0.762207896105054	0.725569617458312
6	18919620	18940878	2	neutral	AA	21.8277	somatic	0	0.15724291314766	0.0741213308212155
6	32486948	32529464	0	loss	-	-1	germline	1	9.22657098550007e-09	5.58963320074213e-10
6	35786662	35798472	5	gain	AAABB	6.44546	germline	1	0.000107614916739672	9.08568355139083e-05
6	36228356	36233080	2	neutral	AA	100	somatic	0	0.0239839693171657	0.052051210167243
6	51201074	51203436	0	loss	-	-1	germline	1	0.0832858831910955	0.270074034918435
6	60231000	60240448	3	gain	-	-1	germline	1	0.000563984744425911	0.000770868027655025
6	63388994	63544886	2	neutral	AA	14.5437	somatic	0	3.72779203579714e-16	2.99760216648792e-15
6	76221740	76242998	2	neutral	AA	54.5678	somatic	0	0.935165817679216	0.842998009171467
6	76729570	76743742	1	loss	A	-1	germline	1	0.000851785169840344	0.00135892318473485
6	90585062	90670094	2	neutral	AA	28.1519	somatic	0	0.00789880543284379	0.0141088044625246
6	114037360	114086962	2	neutral	AA	100	somatic	0	0.000980582687952735	0.0029563947495459
6	120454914	120504516	2	neutral	AA	100	somatic	0	0.475285879931524	0.874637286625102
6	127399194	127458244	2	neutral	AA	39.56	somatic	0	0.0301578622688428	0.0172837592318241
6	133786042	133927762	2	neutral	AA	100	somatic	0	0.00486270314193087	0.0163006470014508
6	137815614	137825062	3	gain	AAB	10.9091	germline	1	0.000533143611751798	0.000672021622329266
6	143564722	143576532	3	gain	AAB	1.09093	germline	1	0.000107962046532326	9.13378024810507e-05
6	155986480	156003014	2	neutral	AA	54.5745	germline	1	0.647207857668689	0.81229466876724
6	156262834	156307712	2	neutral	AA	100	somatic	0	0.0788058481065896	0.0119327709698696
6	157231254	157309200	2	neutral	AA	8.21094	germline	1	0.00713662070017829	0.0266605501825099
6	157313924	157316286	4	gain	AAAB	18.4877	germline	1	0.0832835730555157	0.270070022988182
6	167260306	167295736	2	neutral	AA	17.0779	somatic	0	0.0577757155286356	0.0702941190536824
7	9762146	9766870	1	loss	A	-1	germline	1	0.0160446166250062	0.0419019251504812
7	31275242	31279966	1	loss	A	-1	germline	1	0.0143303581089769	0.0366790947645116
7	52663152	52672600	3	gain	-	-1	germline	1	0.000533124330063811	0.000672001490393925
7	58031978	61069510	3	gain	-	-1	somatic	0	5.34716997256568e-31	0
7	61100216	62297750	2	neutral	AA	1.2749	germline	1	0.674300050344313	0.28604343948555
7	62297750	62359162	3	gain	AAB	0.502625	germline	1	2.47369339771987e-12	9.53681578153009e-13
7	62401678	62406402	5	gain	-	-1	germline	1	0.0143116188953316	0.0366398334249386
7	62437108	62456004	3	gain	AAB	4.13918	germline	1	1.13310655780074e-06	4.47610152720657e-07
7	62519778	62569380	2	neutral	AA	5.34486	somatic	0	2.55680505623927e-06	1.54881993075229e-06
7	62807942	62826838	2	neutral	AA	100	somatic	0	0.0623966065542857	0.0698416515880956
7	63117364	63136260	2	neutral	AA	54.8514	somatic	0	0.507914765887184	0.695730240134348
7	74299072	74332140	2	neutral	AA	36.3786	somatic	0	2.17899119910461e-06	3.22140046937758e-06
7	91747166	91751890	2	neutral	AA	100	somatic	0	0.818050910837806	0.593828525680342
7	96539664	96570370	2	neutral	AA	54.5678	somatic	0	0.213976761619321	0.234818340339925
7	100949518	100956604	3	gain	AAB	1.24087	germline	1	0.0027038735854657	0.00496461056232789
7	100956604	100958966	14	gain	AAAAAAAAAAAAAB	28.1658	germline	1	0.083268558439428	0.270043946501814
7	100958966	100973138	3	gain	AAB	0.964127	germline	1	2.21662396604757e-05	1.23401646605625e-05
7	102806050	103363482	2	neutral	AA	24.2121	somatic	0	0.0686488729583078	0.0300707643385342
7	107459190	107532412	2	neutral	AA	100	somatic	0	0.245239639821898	0.273037020549569
7	109351152	109431460	2	neutral	AA	36.3786	somatic	0	0.154395144337032	0.277373616521821
7	109802294	109814104	1	loss	A	-1	germline	1	0.000383203053358478	0.000218227711256347
7	124574242	124602586	2	neutral	AA	100	somatic	0	0.723542773935855	0.966688507495052
7	129052594	129071490	2	neutral	AA	36.3812	somatic	0	0.904129092497397	0.74112555144303
7	129532080	129536804	2	neutral	AA	100	somatic	0	0.36197883327529	0.719939354036148
7	131886994	131934234	2	neutral	AA	20.892	somatic	0	0.125708039407139	0.0465570607295217
7	132520010	132649920	2	neutral	AA	54.7472	germline	1	3.239690004172e-05	4.42868182330969e-05
7	134100188	134114360	1	loss	A	-1	germline	1	4.92300768429373e-05	4.5043515839116e-05
7	136979466	136986552	2	neutral	AA	100	somatic	0	0.138105983335538	0.246586670429846
7	139409964	139426498	2	neutral	AA	36.3786	somatic	0	0.00382648261514559	0.00513100907063102
7	143848162	143850524	4	gain	-	-1	germline	1	0.0832835730555157	0.270070022988182
7	149030390	149049286	2	neutral	AA	27.2844	somatic	0	0.000527082198182499	9.66043079860812e-05
7	149611442	149656320	2	neutral	AA	100	somatic	0	0.102493808217743	0.0231936662264123
7	152400964	152408050	8	gain	AAAAAABB	3.12633	germline	1	0.00270091659841145	0.00495886907498511
7	154599986	154609434	1	loss	A	-1	germline	1	0.000978170572438455	0.00154105468250743
7	157297390	157351716	2	neutral	AA	60.3944	somatic	0	1.49944267254653e-06	1.39784097474838e-06
7	158150072	158152434	5	gain	AAABB	9.0062	germline	1	0.0832829955297311	0.270069020012413
7	158152434	158166606	2	neutral	AA	47.734	somatic	0	0.329911610984049	0.701799680987002
7	158698056	158705142	2	neutral	AA	100	somatic	0	0.24824916249292	0.524846200967295
8	25115146	25134042	1	loss	A	-1	germline	1	1.68240867025632e-06	8.50672174701472e-07
8	25722180	25729266	3	gain	-	-1	germline	1	0.00270487098909323	0.00496438747826811
8	27486594	27519662	2	neutral	AA	36.3786	somatic	0	0.156931397282808	0.284648015388535
8	27774758	27921202	2	neutral	AA	34.6497	somatic	0	0.918506572444496	0.41237714430975
8	30042278	30290288	2	neutral	AA	100	somatic	0	2.97638388212551e-08	3.15505241932357e-08
8	30486334	30550108	2	neutral	AA	19.1477	somatic	0	0.373273021996292	0.296090893324374
8	31015422	31055576	2	neutral	AA	100	somatic	0	0.0500366431631259	0.172700573205439
8	31993290	32016910	2	neutral	AA	100	somatic	0	0.585752272475983	0.948893838243263
8	37782552	37792000	2	neutral	AA	54.568	somatic	0	0.0637831707855721	0.0895585650171368
8	42615204	42622290	2	neutral	AA	100	somatic	0	0.0473971292826989	0.0566691467129066
8	43234048	43243496	5	gain	AAABB	1.12938	germline	1	0.00430605934636655	0.0222260767143027
8	48224954	48345416	2	neutral	AA	71.5639	somatic	0	7.50188123193395e-08	3.94060123820594e-06
8	50119278	50126364	1	loss	A	-1	germline	1	0.00548324839540697	0.00948956342060092
8	61574978	61582064	2	neutral	AA	100	somatic	0	0.586057390960652	0.910452414555354
8	65311662	65325834	2	neutral	AA	100	germline	1	0.486310263520968	0.239630638047776
8	77086232	77237400	2	neutral	AA	59.8829	somatic	0	0.286380995311663	0.3898621277892
8	81840938	81871644	2	neutral	AA	62.232	somatic	0	0.360690087289695	0.650052132841457
8	82358216	82384198	1	loss	A	-1	germline	1	9.81566571789524e-08	6.33127028581981e-09
8	94317022	94352452	2	neutral	AA	54.5678	germline	1	0.408663401827013	0.30214439601274
8	97793886	97838764	2	neutral	AA	18.5295	somatic	0	1.91367430066583e-05	0.000125956267117977
8	104686202	104693288	2	neutral	AA	100	germline	1	0.381743570572027	0.643080285921018
8	111280906	111285630	1	loss	A	-1	germline	1	0.0143446436058905	0.0366942050776841
8	115008142	115015228	2	neutral	AA	100	germline	1	0.859760889448161	0.868317164176169
8	115674226	115827756	2	neutral	AA	49.5125	somatic	0	0.000202878719027913	0.00150909095422125
8	121373732	121387904	2	neutral	AA	54.579	somatic	0	0.985863058090768	0.653672699861912
8	122561818	122585438	1	loss	A	-1	germline	1	4.00706832418348e-07	3.34302426852062e-08
8	136093716	136105526	2	neutral	AA	54.5678	germline	1	0.430166799673927	0.650461128246387
8	139960310	139962672	0	loss	-	-1	germline	1	0.083268558439428	0.270043946501799
8	141540488	141658588	2	neutral	AA	2.4937	somatic	0	1.7636643471161e-14	3.33066907387547e-15
8	144124516	144126878	6	gain	AAAAAB	18.47	germline	1	0.083280685459034	0.270065008136523
8	145050420	145066954	2	neutral	AA	54.5679	somatic	0	0.906260338427185	0.998496373238132
9	17337080	17360700	2	neutral	AA	100	somatic	0	0.0645219001849739	0.245351101323338
9	17360700	17526040	2	neutral	AA	27.4564	somatic	0	0.00871922000583044	0.0111178045712343
9	23362542	23376714	1	loss	A	-1	germline	1	6.38524327192014e-05	4.42887915429457e-05
9	28658146	28693576	1	loss	A	-1	germline	1	3.6289403740517e-10	4.9613646524449e-12
9	40907478	40914564	5	gain	AAABB	6.26553	germline	1	0.00270134833350216	0.00495931479764145
9	40914564	40928736	6	gain	AAAABB	0.974368	germline	1	0.00270108264290727	0.00495898050220644
9	69121568	69128654	1	loss	A	-1	germline	1	0.0196713741735852	0.0531770989693664
9	84169870	84207662	2	neutral	AA	100	germline	1	0.557102165187754	0.140120251501921
9	88142754	88166374	2	neutral	AA	54.5678	somatic	0	0.534148818274884	0.867231334772618
9	97401794	97446672	2	neutral	AA	54.5785	somatic	0	0.105624295121518	0.0611782964628972
9	113888554	113952328	2	neutral	AA	34.9379	somatic	0	0.0251540109131945	0.180732703754649
9	121059586	121071396	2	neutral	AA	54.5678	somatic	0	0.711000169267999	0.88580365966404
9	129078576	129158884	2	neutral	AA	32.5976	somatic	0	0.15646558468684	0.102052638038264
9	129423428	129444686	3	gain	AAB	0.258571	germline	1	4.58478685305358e-07	1.39748545147089e-06
9	130011566	130134390	2	neutral	AA	66.9992	somatic	0	1.64565316763759e-11	1.93302263085116e-10
9	136396052	136452740	2	neutral	AA	100	somatic	0	0.0813910047451705	0.0771441866737077
9	137326680	137329042	7	gain	AAAAABB	4.17211	germline	1	0.0832783754402422	0.270060996304136
10	387368	673170	2	neutral	AA	8.25921	somatic	0	2.51053744118592e-05	0.000242152950895691
10	1173914	1242412	2	neutral	AA	44.3899	somatic	0	0.00479694756719695	0.00118188548164855
10	2201384	2210832	2	neutral	AA	100	somatic	0	0.0934025814490534	0.230750639700546
10	2513168	2553322	2	neutral	AA	13.4275	somatic	0	0.389843360127522	0.496559113114238
10	3408366	3439072	2	neutral	AA	9.78066	somatic	0	0.022877821092701	0.106236545053863
10	8637834	8682712	2	neutral	AA	54.5679	somatic	0	0.393381601522981	0.177086750551682
10	15012872	15053026	2	neutral	AA	7.43103	somatic	0	0.107449023054435	0.37054863496442
10	16375746	16392280	2	neutral	AA	54.5678	somatic	0	0.0175038667590055	0.0360839084678117
10	18721212	18742470	2	neutral	AA	100	somatic	0	0.149418219915541	0.0791571928496927
10	25315916	25441102	2	neutral	AA	40.8813	somatic	0	0.109905840620707	0.581559826644858
10	26565414	26593758	2	neutral	AA	0.358559	somatic	0	0.725462266352933	0.873614315253112
10	26624464	26652808	2	neutral	AA	0.267146	somatic	0	0.0654943258510305	0.175387417612651
10	26926800	26952782	2	neutral	AA	1.80857	somatic	0	0.1868341385345	0.169289558370511
10	29886386	29905282	2	neutral	AA	100	somatic	0	0.0775998530411601	0.118949300294653
10	35652028	35708716	2	neutral	AA	11.1489	somatic	0	0.309551747960198	0.283045763025699
10	37144812	37151898	2	neutral	AA	2.19366	somatic	0	0.109067340484248	0.135046252590911
10	38484066	38526582	3	gain	AAA	0.529787	somatic	0	9.42448921993207e-12	1.15485399021509e-12
10	38526582	38528944	16	gain	AAAAAAAAAAAAAABB	4.73368	germline	1	0.0832679809979868	0.270042943596735
10	38573822	38578546	3	gain	AAA	100	germline	1	0.0146217616560934	0.0374032948088667
10	38578546	38580908	5	gain	AAAAA	2.6146	germline	1	0.0832818404878943	0.27006701406903
10	38580908	38826556	2	neutral	AA	0.4779	somatic	0	2.34556833840173e-13	1.78679293583173e-12
10	38826556	38836004	2	neutral	AA	2.59688	somatic	0	0.244127080216571	0.40447174948033
10	41828658	41842830	2	neutral	AA	11.5751	germline	1	0.606345521978769	0.87746995230985
10	41857002	41911328	27	gain	AAAAAAAAAAAAAAAAAABBBBBBBBB	3.0174	somatic	0	2.03525241427994e-07	3.04707414855443e-08
10	42301058	42322316	3	gain	AAB	4.60641	somatic	0	4.24754070089881e-07	3.57375547599403e-07
10	46217254	46252684	2	neutral	AA	60.5808	somatic	0	6.55421679344089e-05	0.000191081238244961
10	46514866	46559744	4	gain	AABB	0.68614	germline	1	9.27054599710432e-13	3.44169137633799e-15
10	57493442	57545406	2	neutral	AA	100	germline	1	0.0753743125606753	0.116031449083083
10	60091642	60103452	2	neutral	AA	100	somatic	0	0.598854198644046	0.656376295582911
10	67725626	67727988	0	loss	-	-1	germline	1	0.0832783754402422	0.270060996304121
10	70470270	70510424	2	neutral	AA	15.4847	somatic	0	0.589518620738164	0.723137118825107
10	72650396	73009420	2	neutral	AA	13.9693	somatic	0	4.41633676810676e-09	1.55860768735749e-10
10	77001200	77008286	2	neutral	AA	100	somatic	0	0.152479751256856	0.345072295079632
10	84103734	84132078	2	neutral	AA	100	somatic	0	0.226811190033029	0.226045077898234
10	84521808	84535980	2	neutral	AA	100	somatic	0	0.318465517983888	0.357800570597379
10	89673330	89708760	2	neutral	AA	54.5693	somatic	0	0.246531150232598	0.383327730709822
10	98930008	98937094	1	loss	A	-1	germline	1	0.00453473548672692	0.00802461414051781
10	101306180	101310904	2	neutral	AA	100	somatic	0	0.56485581506432	0.562882002998862
10	119427444	119453426	2	neutral	AA	100	somatic	0	0.0147531042355423	0.00332169485889244
10	120556480	120573014	2	neutral	AA	100	somatic	0	0.964875529743171	0.580247960345233
10	120710010	120719458	2	neutral	AA	100	somatic	0	0.0309568336778524	0.0580682477368668
10	124978144	124987592	2	neutral	AA	100	somatic	0	0.990752650586415	0.989320948521286
10	126948052	126950414	6	gain	-	-1	germline	1	0.083280685459034	0.270065008136523
10	131809048	131917700	2	neutral	AA	31.0003	somatic	0	0.0012390327605207	0.00762336973817879
10	132975876	133056184	2	neutral	AA	20.6807	somatic	0	8.1462610478936e-08	1.12019337139557e-06
11	5763280	5789262	1	loss	A	-1	germline	1	9.68370891452e-08	6.84581891174929e-09
11	50175966	50178328	0	loss	-	-1	germline	1	0.0832702907832143	0.270046955233347
11	55183406	55216474	1	loss	A	-1	germline	1	1.17532223745217e-08	1.37550137946363e-09
11	62146582	62189098	2	neutral	AA	100	somatic	0	0.703613864267731	0.619336583401262
11	64581804	64768402	2	neutral	AA	28.9856	somatic	0	0.000764096799000453	0.00509057796728096
11	69123930	69128654	2	neutral	AA	100	somatic	0	0.0872287786981629	0.117239725076718
11	71365468	71483568	2	neutral	AA	11.4707	somatic	0	2.15365050324235e-09	4.33762432083817e-07
11	78727822	78758528	2	neutral	AA	100	somatic	0	0.0197741676773201	0.0738549740946007
11	80123764	80180452	2	neutral	AA	100	somatic	0	0.167855040569426	0.489303121821615
11	82854236	82922734	2	neutral	AA	100	somatic	0	0.816708067648043	0.759483382759386
11	84526532	84642270	2	neutral	AA	29.4747	somatic	0	0.172238725896989	0.421983768138947
11	87802626	87807350	2	neutral	AA	100	somatic	0	0.394032607411558	0.697123926385789
11	104395676	104402762	1	loss	A	-1	somatic	0	0.0150220650883882	0.0387890767072874
11	105964044	105985302	2	neutral	AA	100	germline	1	0.706253450700437	0.731622519438459
11	108812616	108822064	2	neutral	AA	100	germline	1	0.668275186951843	0.611705887446693
11	116935534	116949706	2	neutral	AA	40.8943	somatic	0	0.019489801386919	0.0587438430324522
11	133863988	133946658	2	neutral	AA	9.92142	somatic	0	0.00135061392917744	0.00695832343813296
11	134582036	134598570	2	neutral	AA	36.4409	somatic	0	0.0526277591445992	0.0191972929913371
12	2255710	2258072	7	gain	AAAAABB	13.6408	germline	1	0.0832783754402422	0.270060996304136
12	6804922	6826180	2	neutral	AA	36.3795	somatic	0	0.342235040663237	0.421649225682614
12	9745612	9750336	2	neutral	AA	100	somatic	0	0.910720540876943	0.854926153413758
12	10577036	10581760	2	neutral	AA	21.8271	somatic	0	0.798651272611223	0.88675956493333
12	12955570	12993362	2	neutral	AA	86.3042	somatic	0	0.104690229488795	0.0492458646685661
12	17689018	17750430	2	neutral	AA	54.5678	somatic	0	0.324373486580265	0.202393328197337
12	21569784	22094148	2	neutral	AA	27.2839	somatic	0	0.329940560306506	0.0196008217906918
12	24503388	24508112	2	neutral	AA	45.7615	somatic	0	0.152257243287521	0.348736742964557
12	25611166	25651320	2	neutral	AA	60.1375	somatic	0	0.147047159182815	0.420397576082628
12	27422820	27444078	2	neutral	AA	100	somatic	0	0.322657825484284	0.196152603167989
12	33233340	33242788	1	loss	A	-1	germline	1	0.00138573229807918	0.00140552615062395
12	37699882	37740036	2	neutral	AA	3.46285	somatic	0	0.960426021511728	0.755175433240741
12	42081392	42128632	2	neutral	AA	1.00682	somatic	0	0.859524022923296	0.60132064017244
12	43080518	43146654	2	neutral	AA	86.991	somatic	0	0.000629019608298974	0.00254248156830716
12	49068188	49122514	2	neutral	AA	27.2839	somatic	0	0.00100181175031918	0.00369821874643761
12	51224694	51238866	2	neutral	AA	100	germline	1	0.00212362569364783	0.00275219676029836
12	51394758	51534116	2	neutral	AA	28.7599	somatic	0	0.521160685346931	0.417403945857027
12	53756758	53789826	2	neutral	AA	36.3786	somatic	0	0.148607142748626	0.454553024378136
12	54607078	54625974	2	neutral	AA	54.5679	somatic	0	0.159137617867831	0.358309832197029
12	56657294	56862788	2	neutral	AA	7.34388	germline	1	7.69463059599467e-15	1.22213350550737e-12
12	56862788	56869874	2	neutral	AA	100	germline	1	0.388383696464337	0.679079225196924
12	59307458	59347612	1	loss	A	-1	germline	1	1.04653363840631e-09	2.17549311898324e-11
12	59435006	59527124	2	neutral	AA	18.6029	somatic	0	0.231075188653057	0.245927893239416
12	59527124	59541296	2	neutral	AA	100	somatic	0	0.81739153907923	0.759174068620976
12	61515928	61520652	2	neutral	AA	62.2243	somatic	0	0.11580817032025	0.242756518060111
12	63055952	63086658	2	neutral	AA	54.5678	somatic	0	0.00188945967338039	0.00691997731289185
12	63955874	64307812	2	neutral	AA	15.9325	somatic	0	0.0030552953118031	0.00770945715327498
12	67125678	67144574	2	neutral	AA	100	somatic	0	0.23075320411098	0.361190789404946
12	67456358	67465806	2	neutral	AA	54.5678	germline	1	0.191935514515904	0.448023654971965
12	71731578	71743388	2	neutral	AA	63.5405	somatic	0	0.115574335365717	0.382775246547202
12	79972596	79979682	2	neutral	AA	100	somatic	0	0.188043418249648	0.332421920430253
12	87202678	87502652	2	neutral	AA	20.3556	somatic	0	1.85724193664625e-08	2.30890754293611e-08
12	93280104	93296638	2	neutral	AA	21.9907	germline	1	0.473633162697842	0.776007343772875
12	95363388	95434248	2	neutral	AA	23.2413	somatic	0	0.000239289694629844	0.000950120720857206
12	95960974	96067264	2	neutral	AA	100	somatic	0	0.468937779940853	0.241461059579502
12	100918812	101065256	2	neutral	AA	27.2961	somatic	0	0.0190936079743643	0.102731503683535
12	106240398	106256932	2	neutral	AA	72.4056	somatic	0	0.268071660328331	0.3710516759722
12	109481062	110050304	2	neutral	AA	3.8188	somatic	0	0.760918967016696	0.150597872966012
12	110050304	110796696	2	neutral	AA	12.543	somatic	0	2.51043315053321e-51	0
12	111578518	111587966	1	loss	A	-1	somatic	0	0.00698989281061687	0.0240487699651357
12	116850502	116862312	2	neutral	AA	54.5678	somatic	0	0.109807987109192	0.166749941143053
12	119042438	119082592	2	neutral	AA	30.7045	somatic	0	0.0399390097107002	0.0789619852911629
12	120424208	120436018	1	loss	A	-1	somatic	0	0.0010455579049872	0.00105716351961815
12	124356938	124375834	2	neutral	AA	35.6726	somatic	0	0.00624677291623613	0.00426540917801632
12	131308304	131310666	4	gain	AABB	16.5662	germline	1	0.0832835730555157	0.270070022988182
12	131636622	131643708	2	neutral	AA	32.435	somatic	0	0.827818648495568	0.795602862953214
12	131650794	131653156	0	loss	-	-1	germline	1	0.083268558439428	0.270043946501799
12	131667328	131688586	2	neutral	AA	68.4883	somatic	0	0.0326559859765049	0.0602784050022926
12	132328688	132333412	2	neutral	AA	54.5678	somatic	0	0.814845595640814	0.709028087591799
12	132385376	132401910	2	neutral	AA	5.81838	germline	1	0.331765255395182	0.464754511410872
13	22018564	22023288	0	loss	-	-1	germline	1	0.0146955753954086	0.0378041733386396
13	38481704	38486428	1	loss	A	-1	germline	1	0.0159636633546639	0.0416591130677865
13	45423622	45425984	0	loss	-	-1	germline	1	0.0832720231561953	0.270049963989366
13	50494836	50501922	1	loss	A	-1	germline	1	0.0150201153995394	0.0387844618267834
13	63027608	63065400	3	gain	-	-1	somatic	0	4.01862578970149e-09	1.28947431732307e-07
13	63065400	63067762	6	gain	-	-1	germline	1	0.083280685459034	0.270065008136523
13	86274412	86276774	2	neutral	AA	100	somatic	0	0.252510366259905	0.495709979431019
13	86427942	86463372	2	neutral	AA	86.1997	somatic	0	0.166048474729506	0.329352214343668
13	89519800	89526886	2	neutral	AA	100	somatic	0	0.112585517234088	0.287314201273596
13	94895712	94909884	2	neutral	AA	100	somatic	0	0.55414138087554	0.457807140380904
13	96055454	96374324	2	neutral	AA	100	somatic	0	0.028940013081836	0.00318184584273529
13	99877170	99903152	2	neutral	AA	100	somatic	0	0.878305257198485	0.99421314576414
13	102047848	102062020	2	neutral	AA	100	somatic	0	0.401728529221477	0.623890557872806
13	102905254	102912340	2	neutral	AA	100	somatic	0	0.939610433736071	0.743502183755526
13	108080396	108089844	2	neutral	AA	100	somatic	0	0.46297210055427	0.834469297699675
13	109216518	109218880	0	loss	-	-1	germline	1	0.0832951242524936	0.270090083074535
13	112135950	112178466	2	neutral	AA	5.68093	somatic	0	0.0018907963950154	0.0042394441283079
14	0	16092306	3	gain	AAB	-1	germline	1	NA	NA
14	16092306	16094668	12	gain	-	-1	germline	1	0.0832691358841129	0.270044949409611
14	16094668	18489736	3	gain	AAB	-1	somatic	0	NA	NA
14	18489736	18492098	2	neutral	AA	100	somatic	0	0.390266537223593	0.630583340037041
14	18492098	18659800	3	gain	AAB	-1	somatic	0	NA	NA
14	18659800	18662162	4	gain	AABB	54.4277	germline	1	0.0832829955297311	0.270069020012413
14	18662162	18681058	3	gain	AAB	-1	somatic	0	NA	NA
14	18695230	19727424	3	gain	AAB	-1	somatic	0	NA	NA
14	19727424	19954176	3	gain	AAB	0.419711	germline	1	5.36782931530653e-30	0
14	26657532	26733116	2	neutral	AA	100	somatic	0	0.162195609975407	0.154569691859405
14	27002384	27061434	2	neutral	AA	55.5044	somatic	0	0.0910385746474642	0.20216027931333
14	28769160	28778608	2	neutral	AA	54.5678	somatic	0	0.864254614554309	0.815959654834021
14	34348204	34350566	0	loss	-	-1	germline	1	0.0832702907832143	0.270046955233347
14	34952876	35049718	2	neutral	AA	70.8261	somatic	0	2.23222291044288e-12	4.38205027819549e-13
14	41353896	41358620	2	neutral	AA	100	somatic	0	0.396546240752264	0.835613087398665
14	50421614	50426338	2	neutral	AA	100	germline	1	0.301666426398372	0.405957330322921
14	51933294	51964000	2	neutral	AA	27.2907	germline	1	0.825739045099337	0.651072119886194
14	52528518	52530880	1	loss	A	-1	germline	1	0.0834179358861409	0.270303790466099
14	56749412	56780118	2	neutral	AA	55.0709	somatic	0	0.117744980168907	0.10801543988284
14	60590024	60592386	0	loss	-	-1	germline	1	0.0832876158268444	0.270077043894685
14	61700164	61745042	2	neutral	AA	45.7515	somatic	0	0.339061430777837	0.324252349568304
14	64655026	64666836	2	neutral	AA	100	somatic	0	0.295850209835126	0.220476663847265
14	64669198	64673922	2	neutral	AA	100	somatic	0	0.197959765742656	0.484835167923328
14	76611470	76653986	2	neutral	AA	100	somatic	0	0.130993199051741	0.150703852443243
14	76873652	76887824	2	neutral	AA	100	germline	1	0.626974084452535	0.940028524700015
14	76970494	76991752	2	neutral	AA	100	somatic	0	0.029708746254296	0.0965845841179493
14	79639554	79649002	0	loss	-	-1	germline	1	0.0143079738740939	0.0366346196515797
14	82733774	82738498	2	neutral	AA	100	somatic	0	0.694727398634911	0.739289769090758
14	84129716	84146250	2	neutral	AA	33.7698	somatic	0	0.0261080994768071	0.0836982481714593
14	84316314	84361192	2	neutral	AA	32.6314	somatic	0	0.208456506727823	0.0570373074596191
14	88589172	88737978	2	neutral	AA	30.0637	germline	1	0.074605547244807	0.104904179809167
14	89437130	89446578	2	neutral	AA	100	somatic	0	0.435786624214609	0.428332980876026
14	89545782	89569402	2	neutral	AA	29.7335	somatic	0	0.201141836105562	0.455034638521348
14	96891602	96924670	2	neutral	AA	54.5679	germline	1	0.00079431133261732	0.011748346733767
14	99926772	99929134	5	gain	AAABB	8.65109	somatic	0	0.0832824180071906	0.270068017039362
14	102073830	102121070	2	neutral	AA	25.1338	somatic	0	0.00162099453561141	0.00131141048755479
14	102617090	102633624	2	neutral	AA	36.5684	somatic	0	0.00129669643362575	0.00121141015339898
15	0	20308476	6	gain	AAAABB	-1	germline	1	0.369892250887395	0.765884449492395
15	20308476	20358078	9	gain	AAAAAABBB	7.67226	germline	1	2.03636471413914e-07	3.04882058488332e-08
15	20358078	20379336	6	gain	AAAABB	-1	germline	1	NA	NA
15	20379336	20381698	4	gain	AAAA	100	germline	1	0.0832933914902174	0.270087073992262
15	20381698	20388784	6	gain	AAAABB	-1	germline	1	NA	NA
15	20388784	20419490	9	gain	AAAAAAABB	29.0215	germline	1	0.000532241283103541	0.000671136351848678
15	20419490	20646242	6	gain	AAAABB	-1	germline	1	NA	NA
15	20646242	20672224	8	gain	AAAAABBB	1.00796	germline	1	2.03709868024777e-07	3.04892334712648e-08
15	20672224	22224058	6	gain	AAAABB	-1	germline	1	NA	NA
15	22224058	22276022	6	gain	AAAABB	1.94532	germline	1	4.32792906260817e-08	4.12786871351045e-09
15	23879820	23896354	2	neutral	AA	36.384	somatic	0	0.376357829975931	0.764049388569725
15	42017618	42029428	2	neutral	AA	36.3786	somatic	0	0.0338767111255126	0.0321504781338494
15	44138694	44143418	2	neutral	AA	27.2847	somatic	0	0.940680268128958	0.980876000447166
15	45095304	45109476	2	neutral	AA	54.5792	somatic	0	0.0714721934165155	0.128872538080818
15	45702338	45707062	2	neutral	AA	58.0998	somatic	0	0.922538631316977	0.975753114869755
15	45884212	46016484	2	neutral	AA	36.6572	somatic	0	0.00507957716286137	0.0936128739511619
15	47249448	47351014	2	neutral	AA	20.6692	somatic	0	0.0059499037281304	0.00492086453839424
15	53279634	53281996	2	neutral	AA	100	somatic	0	0.476980366577448	0.702441162306642
15	54009492	54016578	2	neutral	AA	54.5678	somatic	0	0.0115070864200977	0.0251382998554049
15	69336510	69393198	2	neutral	AA	14.4407	somatic	0	0.430380791212396	0.397498467653425
15	73930600	73982564	2	neutral	AA	100	somatic	0	0.642259765441566	0.880720875802684
15	76590212	76602022	1	loss	A	-1	germline	1	0.000287966621003466	0.000286277304798688
15	81921246	84821782	2	neutral	AA	15.643	somatic	0	4.03578792653878e-05	2.71789453187843e-06
15	90117386	90159902	2	neutral	AA	21.8271	somatic	0	0.000115104946271309	0.00308147644167656
15	95320872	95332682	2	neutral	AA	54.5678	somatic	0	0.284125236516326	0.491535340106986
15	95958612	96024748	2	neutral	AA	100	somatic	0	0.0309665375971105	0.0834282501159573
15	96412116	96449908	2	neutral	AA	70.9199	somatic	0	0.719210718261046	0.934685767156026
15	97271884	97288418	1	loss	A	-1	germline	1	1.48572927244097e-05	6.76013402511888e-06
15	101183356	101225872	2	neutral	AA	43.6731	somatic	0	0.0834925703098292	0.163961151881029
16	845596	847958	5	gain	AAABB	5.49643	germline	1	0.0832824180071906	0.270068017039362
16	1025108	1027470	4	gain	AABB	100	germline	1	0.0832835730555157	0.270070022988182
16	3443796	3479226	2	neutral	AA	100	somatic	0	0.0339435764631067	0.0329639578326176
16	20565934	20568296	0	loss	-	-1	germline	1	0.0832853056523343	0.27007303193179
16	21560336	21581594	3	gain	AAB	4.37454	germline	1	2.24307108672322e-07	4.19598703560453e-08
16	22613788	22698820	3	gain	AAB	1.57817	germline	1	6.11224407269283e-23	0
16	25327726	25332450	1	loss	A	-1	germline	1	0.0143496213755372	0.0367508484780187
16	26293784	26310318	2	neutral	AA	100	somatic	0	0.674790882316346	0.897372909148294
16	34062402	34064764	27	gain	AAAAAAAAAAAAAAAAAABBBBBBBBB	32.1789	germline	1	0.0832668261248361	0.270040937794735
16	34069488	34083660	3	gain	AAA	100	somatic	0	0.000144592266195583	0.000203420394841891
16	34083660	34086022	13	gain	AAAAAAAABBBBB	100	germline	1	0.083268558439428	0.270043946501814
16	34086022	34095470	2	neutral	AA	16.641	germline	1	0.00430029150332158	0.0182664073220092
16	34095470	34100194	7	gain	AAAAABB	5.24059	germline	1	0.014310160788553	0.0366376380728236
16	34100194	34159244	2	neutral	AA	11.1581	germline	1	0.876646630482821	0.386744052732392
16	34159244	34192312	2	neutral	AA	-1	germline	1	0.0143120745805761	0.0366412055784565
16	34192312	34211208	2	neutral	AA	2.49892	germline	1	0.544747281160131	0.402453782703764
16	34211208	34213570	4	gain	AAAB	4.66598	germline	1	0.0832841505845444	0.270071025966671
16	34213570	34218294	2	neutral	AA	-1	germline	1	NA	NA
16	34218294	34256086	2	neutral	AA	8.65168	somatic	0	0.012384784408969	0.0529457375563178
16	34256086	34596214	2	neutral	AA	-1	somatic	0	NA	NA
16	34596214	34900912	2	neutral	AA	100	somatic	0	9.73142948508518e-22	0
16	34900912	34903274	4	gain	-	-1	germline	1	0.0832835730555157	0.270070022988182
16	34903274	34959962	2	neutral	AA	0.906111	germline	1	1.10321248182449e-07	8.34707030161752e-08
16	36048844	36088998	2	neutral	AA	54.5678	somatic	0	0.185112697385859	0.109475553749304
16	36122066	36126790	5	gain	-	-1	germline	1	0.0143117100313566	0.0366401078520454
16	46401490	46403852	13	gain	AAAAAAAAAAAAA	7.87196	germline	1	0.0832691358841129	0.270044949409611
16	46403852	46467626	2	neutral	AA	1.33268	germline	1	3.96727690306939e-07	4.435993978813e-07
16	59156290	59186996	2	neutral	AA	39.5162	somatic	0	0.724293497720769	0.670402569408248
16	65321110	65323472	1	loss	A	-1	germline	1	0.0833159196774615	0.270126193970703
16	72662206	72671654	2	neutral	AA	100	somatic	0	0.402500337227929	0.50754052541629
16	78338092	78349902	1	loss	A	-1	germline	1	0.00019204223566623	0.000231267433546734
16	85518572	85520934	4	gain	AABB	23.2472	somatic	0	0.0832916587571404	0.270084064934444
16	86127968	86165760	2	neutral	AA	54.5679	germline	1	0.690275211049416	0.441049077276008
16	89503266	89529248	2	neutral	AA	52.7338	somatic	0	0.233321231793436	0.37047909657744
16	89973304	89999286	1	loss	A	-1	germline	1	5.2441270070207e-08	6.68677613280266e-09
17	2692680	2709214	2	neutral	AA	54.5873	germline	1	0.6573204625999	0.375050182563306
17	4197274	4265772	2	neutral	AA	54.5678	somatic	0	0.000379783725963265	0.000120306064384956
17	4908236	4920046	2	neutral	AA	100	somatic	0	0.0169833787190278	0.00992884154594131
17	5052318	5071214	2	neutral	AA	16.3834	somatic	0	0.000390461431261824	0.00141166335422149
17	6391572	6410468	3	gain	AAB	1.83982	germline	1	9.69381642972935e-07	2.26226313682076e-07
17	7270236	7277322	2	neutral	AA	54.5678	somatic	0	0.113349205973188	0.162050690916898
17	7522970	7530056	2	neutral	AA	100	somatic	0	0.0398710037665962	0.047017477304685
17	7768618	7792238	2	neutral	AA	36.3786	somatic	0	0.502871982086013	0.53016440088227
17	7922148	7931596	2	neutral	AA	54.5678	somatic	0	0.936990881163308	0.867421356827627
17	9790490	9795214	2	neutral	AA	54.5678	somatic	0	0.76899680806176	0.950980034498871
17	12152490	12171386	2	neutral	AA	47.289	somatic	0	0.876238503044687	0.985297496264188
17	16817440	16819802	5	gain	AAABB	18.698	germline	1	0.0832829955297311	0.270069020012413
17	17603986	17637054	2	neutral	AA	100	somatic	0	0.00200913563468768	0.00591387051039893
17	21291068	21302878	4	gain	AABB	0.24253	germline	1	0.000107623886476745	9.08653423060679e-05
17	21676074	21855586	4	gain	-	-1	somatic	0	2.42007748039597e-07	5.46718399441204e-08
17	21855586	21857948	6	gain	-	-1	germline	1	0.0832783754402422	0.270060996304136
17	21857948	21883930	3	gain	-	-1	germline	1	1.92144651948484e-08	2.62505328585405e-08
17	21883930	21968962	0	loss	-	-1	germline	1	2.59569081697824e-24	0
17	21976048	21978410	25	gain	-	-1	germline	1	0.0832668261248361	0.270040937794735
17	21978410	21990220	9	gain	-	-1	germline	1	0.00053230224976397	0.000671307284761613
17	22124854	22157922	6	gain	AAAABB	0.213085	germline	1	9.14849972706652e-11	1.38544731242973e-12
17	26782718	26822872	3	gain	-	-1	germline	1	4.93731631301217e-11	2.64634980595702e-11
17	26822872	26827596	5	gain	-	-1	germline	1	0.0143120745805761	0.036641480014555
17	26827596	26865388	3	gain	-	-1	somatic	0	2.09960986563953e-09	1.18861771536416e-08
17	26865388	26867750	8	gain	-	-1	germline	1	0.0832772204503106	0.270058990404256
17	26867750	26877198	3	gain	-	-1	germline	1	0.00169315376775222	0.00918722155759644
17	28488082	28499892	2	neutral	AA	54.5678	somatic	0	0.150944475040167	0.230702770649568
17	28811676	28814038	1	loss	A	-1	somatic	0	0.123757548099473	0.334511448941387
17	34924532	34950514	2	neutral	AA	18.3811	somatic	0	0.00271436578039567	0.00753545517695409
17	39596568	39606016	2	neutral	AA	54.5678	somatic	0	0.927277928022018	0.959421223858876
17	39709944	39714668	2	neutral	AA	54.5678	somatic	0	0.546270196937202	0.907508827559984
17	41136592	41162574	2	neutral	AA	8.58709	somatic	0	0.392200787540946	0.180638834728102
17	43767860	43867064	2	neutral	AA	54.5873	germline	1	0.270961745772072	0.109798838275459
17	44566216	44568578	2	neutral	AA	100	somatic	0	0.195184416404599	0.429692768807645
17	56673828	56683276	2	neutral	AA	100	somatic	0	0.41457129543667	0.79845076361859
17	57323378	57389514	2	neutral	AA	100	somatic	0	0.00127089326468723	0.00048824941385972
17	57746176	57750900	2	neutral	AA	100	somatic	0	0.948816370348841	0.90704012807949
17	60131796	60143606	2	neutral	AA	54.5705	somatic	0	0.0372494946800376	0.0438277049380058
17	61185248	61213592	2	neutral	AA	36.4143	somatic	0	0.10735939096709	0.144688585985079
17	63457492	63462216	2	neutral	AA	54.5678	somatic	0	0.152453369107661	0.217315227049674
17	63837774	63842498	2	neutral	AA	100	germline	1	0.443395087773979	0.433689900373622
17	65791148	65885628	2	neutral	AA	59.125	somatic	0	0.716933093042434	0.478075389088545
17	69603416	69655380	2	neutral	AA	54.573	somatic	0	0.162659176417664	0.0259946552948811
17	73373168	73392064	2	neutral	AA	100	somatic	0	0.19728455043731	0.249747507890512
17	74842332	74849418	2	neutral	AA	100	somatic	0	0.57320477059978	0.895263407848629
17	77381482	77390930	2	neutral	AA	55.0758	somatic	0	0.300883275453351	0.500853814445871
17	78106616	78116064	2	neutral	AA	100	somatic	0	0.0485186017659702	0.141970618302138
17	78361712	78373522	2	neutral	AA	54.5678	somatic	0	0.129671048085147	0.30340460939177
17	81356728	81361452	2	neutral	AA	54.5678	somatic	0	0.176494162675703	0.365113851906807
17	81633082	81640168	2	neutral	AA	100	somatic	0	0.0236672105534961	0.0371395710934456
17	81807870	81822042	2	neutral	AA	36.3786	somatic	0	0.0930084853740587	0.225127779200474
17	82509384	82528280	2	neutral	AA	55.917	somatic	0	0.00568955605659702	0.0236220815741155
17	82573158	82584968	2	neutral	AA	54.5686	somatic	0	0.819891244838791	0.856507826415513
17	82584968	82587330	5	gain	AAABB	14.2894	germline	1	0.0832824180071906	0.270068017039362
18	302336	311784	2	neutral	AA	54.571	somatic	0	0.155285575944754	0.204155962999165
18	2373810	2395068	2	neutral	AA	100	somatic	0	0.788945907132146	0.825165158225294
18	5305052	5309776	1	loss	A	-1	germline	1	0.0239349737096519	0.0559622739279684
18	5323948	5326310	0	loss	-	-1	germline	1	0.08330783206808	0.270112150425693
18	5375912	5411342	2	neutral	AA	54.5678	somatic	0	0.709045098683062	0.859564785393502
18	8250466	8262276	2	neutral	AA	100	somatic	0	0.940742098636497	0.857166344669855
18	11812362	11814724	2	neutral	AA	100	somatic	0	0.239278291122589	0.481103500765757
18	11965892	12006046	2	neutral	AA	36.3786	somatic	0	0.00798156695978416	0.00203483136569294
18	12083992	12091078	2	neutral	AA	1.86662	somatic	0	0.0106816547689393	0.0355947536749054
18	23962490	24014454	2	neutral	AA	37.2585	somatic	0	0.396021332848771	0.482398004721838
18	27810188	27949546	2	neutral	AA	16.5227	somatic	0	0.0995027831659885	0.0183477517136281
18	29801354	29806078	2	neutral	AA	100	somatic	0	0.609603903857986	0.955834344764368
18	33868718	33878166	3	gain	AAB	18.8398	germline	1	0.000533545461401335	0.000672504958433739
18	36773978	36792874	2	neutral	AA	54.5678	somatic	0	0.212081940924243	0.290791912350494
18	37780190	37839240	2	neutral	AA	6.26117	somatic	0	0.00327230512537535	0.0066421702256465
18	39131254	39133616	2	neutral	AA	100	somatic	0	0.178943584667507	0.409562724219758
18	40680726	40687812	1	loss	A	-1	germline	1	0.00645071730342388	0.0101220650864052
18	42119184	42130994	2	neutral	AA	100	somatic	0	0.793815132004261	0.979764665210208
18	44119798	44190658	2	neutral	AA	100	somatic	0	0.824880658755464	0.78433896245682
18	57278500	57283224	1	loss	A	-1	germline	1	0.0211675239163592	0.0577336606347711
18	57604456	57668230	2	neutral	AA	36.5451	germline	1	9.17757201638691e-07	1.81561260237384e-06
18	59380680	59399576	2	neutral	AA	54.5678	somatic	0	0.0612392897006174	0.116278928266658
18	66098208	66102932	1	loss	A	-1	germline	1	0.0189393398029385	0.0499590412373141
18	68887730	68913712	2	neutral	AA	54.568	somatic	0	0.360275567150773	0.629914189900052
18	74615580	74617942	3	gain	-	-1	germline	1	0.0832957018464078	0.270091086107417
18	74960432	75007672	2	neutral	AA	27.284	germline	1	0.0407525614892955	0.186372780347302
18	77967258	77976706	2	neutral	AA	19.3652	somatic	0	0.288115304456096	0.804456720606224
18	79200222	79202584	4	gain	AABB	27.1546	germline	1	0.0832835730555157	0.270070022988182
19	1856532	1932116	2	neutral	AA	26.3421	somatic	0	0.00301148920403545	0.0104072623352791
19	2281692	2428136	2	neutral	AA	9.28916	somatic	0	1.15442487306559e-05	6.84206408396726e-06
19	4218532	4223256	4	gain	AAAB	30.6321	germline	1	0.014312621419764	0.0366417544524522
19	6188440	6204974	2	neutral	AA	40.7763	somatic	0	0.102543250927706	0.126855232760576
19	7206462	7230082	2	neutral	AA	34.862	somatic	0	0.00136064242812959	0.00280089648078186
19	7449748	7452110	9	gain	AAAAAABBB	12.0161	germline	1	0.0832726006203435	0.270050966913491
19	8885844	8918912	2	neutral	AA	1.62564	germline	1	0.0549822464234563	0.298880099961997
19	8918912	8921274	1	loss	A	-1	somatic	0	0.123645976345883	0.334347093697752
19	9979450	9986536	2	neutral	AA	36.7215	somatic	0	0.328102845796013	0.308167875601454
19	16052152	16059238	2	neutral	AA	16.1004	somatic	0	0.1099634589424	0.150546006964379
19	21451684	21619386	2	neutral	AA	22.005	somatic	0	1.01632931783773e-06	2.69676338626734e-06
19	24330962	24404184	4	gain	AABB	0.179379	germline	1	1.09343537350406e-20	0
19	27243308	27316530	2	neutral	AA	1.2803	somatic	0	0.00054803767635251	0.000123650050177671
19	27316530	27337788	2	neutral	AA	100	somatic	0	0.442340307389197	0.485979287215329
19	27337788	27340150	4	gain	AAAB	5.56899	germline	1	0.0832829955297311	0.270069020012413
19	27340150	27344874	2	neutral	AA	71.245	somatic	0	0.91105240587633	0.826203874414889
19	27344874	27380304	5	gain	AAABB	0.163943	germline	1	4.2484580008342e-10	1.02383657107907e-11
19	27380304	27382666	2	neutral	AA	16.0645	germline	1	0.439145022383561	0.672146943722339
19	27382666	27399200	5	gain	AAABB	0.293728	germline	1	4.59880309639775e-06	1.66460586459305e-06
19	32607410	32642840	2	neutral	AA	36.7141	somatic	0	0.00112567136114093	5.66999951540081e-05
19	34334032	34485200	2	neutral	AA	65.4182	somatic	0	1.45814594663054e-08	1.87610404989158e-08
19	34558422	34574956	2	neutral	AA	100	somatic	0	0.239347296865509	0.199252724961198
19	35361502	35370950	1	loss	A	-1	germline	1	0.000903322848805858	0.00118136964253601
19	38264400	38432102	2	neutral	AA	13.1822	somatic	0	1.62866414931904e-10	1.16442411268736e-10
19	44755176	44783520	2	neutral	AA	27.2839	somatic	0	8.02069438346212e-06	1.27657409552118e-05
19	45730682	45761388	2	neutral	AA	100	somatic	0	0.0021717176883122	0.0057399575368493
19	48803644	48817816	2	neutral	AA	27.2864	germline	1	0.000624974520727925	0.000462832564533389
19	51630958	51645130	1	loss	A	-1	germline	1	5.76670132081819e-05	2.92212770295341e-05
19	52847388	52868646	2	neutral	AA	22.7857	somatic	0	0.0375361791413144	0.147285417588051
19	53867772	53881944	2	neutral	AA	13.1512	somatic	0	0.0582766401239553	0.0204211369378455
19	55658168	55672340	2	neutral	AA	17.5343	somatic	0	0.240588652030376	0.244607853450998
19	56085690	56142378	2	neutral	AA	18.4899	somatic	0	0.0452319417458884	0.144617172065931
20	63774	66136	7	gain	-	-1	germline	1	0.0832777979436544	0.270059993352836
20	1518766	1540024	2	neutral	AA	100	somatic	0	0.0369206380493571	0.0948609249700394
20	12759524	12764248	2	neutral	AA	100	somatic	0	0.668833164754952	0.702102869846933
20	15863192	15867916	2	neutral	AA	100	somatic	0	0.262532329382451	0.664570743080159
20	16243474	16262370	2	neutral	AA	12.0697	somatic	0	0.549321251535	0.407367521575994
20	18331482	18340930	2	neutral	AA	100	somatic	0	0.357116076092776	0.529353377257451
20	18699954	18714126	2	neutral	AA	100	somatic	0	0.184362934506769	0.242910481926987
20	21305240	21307602	0	loss	-	-1	germline	1	0.0832662486931264	0.270039934897798
20	25863900	25868624	2	neutral	AA	9.92221	somatic	0	0.0744304158527063	0.14686877804051
20	26284336	26293784	2	neutral	AA	100	somatic	0	0.717677839127595	0.465992016365402
20	28773884	28788056	6	gain	-	-1	germline	1	0.00270108264290727	0.00495903621667781
20	28804590	28832934	9	gain	-	-1	germline	1	2.03658961207236e-07	3.04892334712648e-08
20	28835296	28837658	3	gain	-	-1	germline	1	0.0838859582690735	0.271114589879987
20	29206130	29260456	1	loss	A	-1	germline	1	0.000885172182938421	0.00151399121255513
20	29262818	29265180	13	gain	-	-1	germline	1	0.0832691358841129	0.270044949409611
20	29409262	29411624	5	gain	-	-1	germline	1	0.0832824180071906	0.270068017039362
20	29876938	29879300	10	gain	-	-1	germline	1	0.0832720231561953	0.270049963989381
20	29891110	29893472	7	gain	-	-1	germline	1	0.0832777979436544	0.270059993352836
20	31053214	31074472	46	gain	-	-1	germline	1	0.00269998692158701	0.00495775492899508
20	31161866	31166590	3	gain	-	-1	germline	1	0.0143364267701687	0.0366837646435659
20	31166590	31168952	5	gain	-	-1	germline	1	0.0832824180071906	0.270068017039362
20	31168952	31183124	3	gain	-	-1	somatic	0	6.83934648884833e-05	0.000157478526395693
20	31183124	31187848	19	gain	-	-1	germline	1	0.0143069716368318	0.0366332477138565
20	31187848	31239812	3	gain	AAA	2.46118	germline	1	9.68940621651759e-07	2.27272278108259e-07
20	31239812	31242174	59	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	15.8766	germline	1	0.0832662486931264	0.270039934897813
20	31242174	31246898	3	gain	AAA	3.34264	germline	1	0.0148589249498182	0.0382763212303044
20	35474878	35526842	2	neutral	AA	100	somatic	0	0.0601627391493469	0.0243015094853394
20	36457470	36497624	2	neutral	AA	36.38	somatic	0	0.146419651759057	0.124714341773135
20	36497624	36530692	2	neutral	AA	57.1676	somatic	0	0.000881305996006047	0.000817104136384805
20	38186454	38214798	2	neutral	AA	65.1269	somatic	0	0.0323741864058851	0.0645450059188256
20	43642674	43647398	1	loss	A	-1	germline	1	0.0187205545965961	0.0501855324636847
20	46847908	46866804	2	neutral	AA	54.5678	somatic	0	0.454836742422962	0.398652700416665
20	52630084	52653704	2	neutral	AA	36.3786	somatic	0	0.138917319599822	0.147406943257827
20	53560712	53565436	2	neutral	AA	54.5678	somatic	0	0.0362632480046629	0.0653856082192389
20	60804966	60809690	2	neutral	AA	100	somatic	0	0.148484116043244	0.289264875611366
20	61544272	61563168	2	neutral	AA	11.6654	germline	1	0.0306993686493965	0.251754841261582
20	64088146	64090508	4	gain	AAAA	20.2267	germline	1	0.0832829955297311	0.270069020012413
20	64092870	64095232	1	loss	A	-1	germline	1	0.0833465428173005	0.270179363647291
20	64274744	64281830	2	neutral	AA	100	somatic	0	0.182652679435566	0.379648923954957
21	10520348	10522710	3	gain	AAB	29.8544	germline	1	0.0833997216140271	0.270271676316671
21	10650258	10652620	5	gain	AAAAB	15.9993	germline	1	0.0832829955297311	0.270069020012413
21	10652620	10690412	6	gain	AAAABB	1.21839	germline	1	1.97547761879498e-11	1.87516668859189e-13
21	10690412	10695136	33	gain	AAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBB	32.4569	germline	1	0.014306607202273	0.0366321501960409
21	10695136	10704584	5	gain	AAAAB	4.31955	germline	1	0.000532385688370888	0.000671246950838311
21	10704584	10737652	6	gain	AAAAAB	32.3593	germline	1	9.14776389764422e-11	1.38544731242973e-12
21	10751824	10754186	13	gain	AAAAAAAABBBBB	2.17723	germline	1	0.083268558439428	0.270043946501814
21	15856106	15865554	2	neutral	AA	54.5678	somatic	0	0.0734633528224011	0.166361181968132
21	20516332	20528142	2	neutral	AA	100	somatic	0	0.233075677275622	0.345572368379379
21	20587192	20589554	1	loss	A	-1	somatic	0	0.0840423403617426	0.271385250028708
21	20750170	20799772	2	neutral	AA	100	somatic	0	0.256901614763777	0.252184065634003
21	40359494	40376028	2	neutral	AA	27.2839	somatic	0	0.920224106528616	0.764245290069524
21	41547580	41568838	2	neutral	AA	51.6872	germline	1	0.922658908885346	0.587617817059536
21	41805038	41807400	4	gain	AAAA	7.47558	somatic	0	0.0832893484917914	0.27008005289542
21	43262392	43264754	4	gain	AAAA	38.9049	germline	1	0.0832829955297311	0.270069020012413
21	43335614	43337976	4	gain	AAAB	30.7514	germline	1	0.0832847281168173	0.270072028947878
21	44696126	44712660	2	neutral	AA	100	somatic	0	0.161404189641829	0.460300382357382
21	45303160	45307884	2	neutral	AA	54.5678	somatic	0	0.0575422111124314	0.167067704378116
21	45553532	45555894	1	loss	A	-1	somatic	0	0.0834714408635421	0.270396134156666
22	11625764	11630488	4	gain	AABB	32.112	germline	1	0.0143139885983693	0.0366444989303377
22	16040342	16042704	3	gain	-	-1	germline	1	0.0833141865647699	0.270123184594781
22	16042704	16045066	9	gain	-	-1	germline	1	0.0832743330322515	0.270053975702136
22	17681932	17700828	2	neutral	AA	36.5615	somatic	0	0.000410999294492511	0.000170786740700701
22	17875616	17877978	4	gain	AAAA	1.95192	germline	1	0.0832835730555157	0.270070022988182
22	18730660	18733022	5	gain	AAABB	97.5014	somatic	0	0.0832829955297311	0.270069020012413
22	23610552	23620000	2	neutral	AA	54.5678	somatic	0	0.374479976350968	0.752287268436756
22	24356944	24423080	2	neutral	AA	27.2897	somatic	0	0.284557505891333	0.694189507528824
22	24770294	24810448	2	neutral	AA	100	somatic	0	0.000533855237543751	0.000235682843591101
22	32250748	32255472	2	neutral	AA	54.5678	somatic	0	0.917087722558626	0.945209030184888
22	32690080	32692442	2	neutral	AA	100	somatic	0	0.869717125785939	0.925460718712159
22	33391594	33396318	2	neutral	AA	54.5678	somatic	0	0.876977604626895	0.952214466410016
22	36747996	36752720	1	loss	A	-1	germline	1	0.0164206390698362	0.0408537377264788
22	45593686	45619668	2	neutral	AA	6.72962	germline	1	0.0579849923136098	0.087801826957192
22	45888936	45933814	2	neutral	AA	17.7577	somatic	0	0.0275549614493765	0.0651067992292648
22	46498332	46505418	2	neutral	AA	100	somatic	0	0.187751796733017	0.147074010728525
22	46616432	46625880	2	neutral	AA	35.0866	germline	1	0.1659560652517	0.263757027508814
22	46625880	46649500	2	neutral	AA	7.0054	germline	1	0.0442338978698458	0.0108607598954866
22	47650988	47655712	2	neutral	AA	13.3833	somatic	0	0.898257856431653	0.757800441320992
22	48541462	48562720	2	neutral	AA	36.714	somatic	0	0.453175183733899	0.415267768287659
X	3524104	3526466	2	gain	-	-1	somatic	0	0.258566776200988	0.502277661127089
X	58487844	58497292	2	gain	AA	54.5678	germline	1	0.569494926603602	0.863754209981967
X	78267232	78271956	2	gain	-	-1	somatic	0	0.131824114877815	0.230731845875199
Y	10654982	10657344	8	gain	-	-1	germline	1	0.0832777979436544	0.270059993352836
Y	10659706	10754186	3	gain	-	-1	germline	1	5.57550203267208e-06	2.19146822141303e-05
Y	10754186	10756548	5	gain	-	-1	germline	1	0.0832824180071906	0.270068017039362
Y	10756548	10758910	2	gain	-	-1	germline	1	0.356643658095127	0.600169211805028
Y	10758910	10763634	6	gain	-	-1	germline	1	0.0143107075632374	0.0366398334249386
Y	10763634	10768358	2	gain	-	-1	germline	1	0.0756786262820987	0.242916689280287
Y	10768358	10770720	4	gain	-	-1	germline	1	0.0832829955297311	0.270069020012413
Y	10770720	10775444	2	gain	-	-1	germline	1	0.822420689788191	0.702118359371813
Y	10775444	10777806	6	gain	-	-1	germline	1	0.083280685459034	0.270065008136523
Y	10777806	10784892	2	gain	-	-1	germline	1	0.730791376509762	0.74475245649851
Y	10784892	10794340	3	gain	-	-1	germline	1	0.000534253402343621	0.000674340569911558
Y	10794340	10796702	6	gain	-	-1	germline	1	0.083278952940074	0.270061999258154
Y	10796702	10803788	3	gain	-	-1	germline	1	0.00270394006858409	0.00496422017125353
Y	10803788	10825046	2	gain	-	-1	germline	1	0.438551844349018	0.361001240793761
Y	10825046	10827408	4	gain	-	-1	germline	1	0.0832876158268444	0.2700770438947
Y	10827408	10921888	2	gain	-	-1	germline	1	0.000724125630092889	5.72818452115875e-07
Y	10924250	10926612	5	gain	-	-1	germline	1	0.0832829955297311	0.270069020012413
Y	10926612	10933698	2	gain	-	-1	germline	1	0.470754653740096	0.236830277867799
Y	10933698	10938422	4	gain	-	-1	germline	1	0.0143170879630501	0.0366557531701144
Y	10938422	10985662	2	gain	-	-1	germline	1	0.449116618737443	0.234033357251254
Y	10985662	10988024	14	gain	-	-1	germline	1	0.083268558439428	0.270043946501814
Y	10988024	10990386	4	gain	-	-1	germline	1	0.0832847281168173	0.270072028947878
Y	10990386	10999834	2	gain	-	-1	germline	1	0.518512714827735	0.281663914993074
Y	10999834	11002196	8	gain	-	-1	germline	1	0.0832777979436544	0.270059993352836
Y	11014006	11016368	17	gain	-	-1	germline	1	0.0832679809979868	0.270042943596735
Y	11016368	11039988	2	gain	AA	51.8996	germline	1	0.502313855400825	0.192296405178324
Y	11290360	11306894	34	gain	AAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBB	43.7938	germline	1	4.59392455835683e-06	1.66347166952185e-06
Y	11306894	11335238	9	gain	AAAAAABBB	1.62059	germline	1	2.21044513834396e-05	1.22972638328944e-05
Y	11531284	11533646	24	gain	AAAAAAAAAAAAAAAAAAAAAAAB	38.6794	germline	1	0.0832674035597896	0.270041940694376
Y	11687176	11689538	4	gain	AAAB	18.7565	germline	1	0.0832916587571404	0.270084064934444
Y	11689538	11691900	8	gain	AAAAABBB	75.9889	germline	1	0.0832777979436544	0.270059993352836
Y	11715520	11717882	4	gain	AAAA	6.51787	germline	1	0.0832835730555157	0.270070022988182
Y	11720244	11724968	22	gain	AAAAAAAAAAAAAAABBBBBBB	94.4587	germline	1	0.0143067894185288	0.0366326989513526
Y	11724968	11746226	2	gain	AA	3.88932	germline	1	0.906370335540663	0.185756574370878
Y	11746226	11748588	12	gain	AAAAAAAABBBB	4.83641	germline	1	0.0832697133320416	0.270045952320127
Y	26636274	26640998	4	gain	AABB	6.13333	germline	1	0.0143122568582576	0.0366406567116542
Y	56824996	56836806	25	gain	AAAAAAAAAAAAAAAAABBBBBBBB	7.43012	germline	1	0.000107529099220521	9.0814312901033e-05
Y	56836806	56850978	8	gain	AAAAAABB	4.40237	germline	1	0.00053225090898575	0.000671236895678717
