chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	5668416	5675904	3	gain	-	-1	germline	1	0.002702627773256	0.00496235851007032
1	12849408	12854400	4	gain	-	-1	germline	1	0.0143104964361265	0.0366382960095548
1	16613376	16623360	7	gain	-	-1	somatic	0	0.00270017286152423	0.00495794539167727
1	16882944	16942848	3	gain	-	-1	germline	1	9.26694399607312e-09	5.6097171352576e-10
1	31429632	31432128	5	gain	-	-1	germline	1	0.0832724427819153	0.270050664836066
1	55663296	55668288	1	loss	A	-1	somatic	0	0.0143210845283	0.0366652520978747
1	72299136	72346560	1	loss	A	-1	germline	1	1.57034939834209e-12	4.44089209850063e-15
1	103359360	103366848	1	loss	A	-1	somatic	0	0.00503869020472356	0.010230818999537
1	105473472	105480960	1	loss	A	-1	somatic	0	0.00353827284017924	0.00729521608043704
1	109644288	109649280	0	loss	-	-1	germline	1	0.0143085720705359	0.0366388755278947
1	112145280	112162752	1	loss	A	-1	somatic	0	0.00346333540979559	0.00685579191719798
1	125069568	125074560	3	gain	-	-1	somatic	0	0.0143176185740361	0.0366562648077551
1	125079552	125082048	11	gain	-	-1	germline	1	0.083265735776774	0.270039016102605
1	125082048	125084544	5	gain	-	-1	germline	1	0.0832718330360917	0.270049605845139
1	125161920	125164416	4	gain	-	-1	germline	1	0.0832767111039498	0.270058077857426
1	125164416	125166912	6	gain	-	-1	germline	1	0.0832693940889647	0.270045369911749
1	152582976	152612928	1	loss	A	-1	germline	1	4.21548825496564e-08	1.00938302161069e-09
1	152787648	152790144	0	loss	-	-1	germline	1	0.0832651260707337	0.270037957145029
1	157228032	157285440	2	neutral	AA	36.3819	somatic	0	0.124970090798876	0.341177084131841
1	169258752	169273728	1	loss	A	-1	germline	1	5.72954740624922e-05	3.57334051802605e-05
1	174642624	174732480	2	neutral	AA	54.5687	germline	1	0.786686977568518	0.97067579325537
1	174827328	174834816	1	loss	A	-1	germline	1	0.0207220575408747	0.0564973671708967
1	187746624	187754112	1	loss	A	-1	somatic	0	0.00551916232885629	0.00939750581580145
1	194395968	194420928	2	neutral	AA	100	somatic	0	0.654479353538084	0.914902695599357
1	202210944	202255872	2	neutral	AA	100	germline	1	0.351298923738815	0.612859415927901
1	206821056	206831040	2	neutral	AA	100	somatic	0	0.501268213201872	0.813125665184296
1	209903616	209913600	1	loss	A	-1	somatic	0	0.00130670998186235	0.00161671991097068
1	215711808	215741760	2	neutral	AA	100	somatic	0	0.824611769179533	0.671960403516177
1	228067008	228072000	1	loss	A	-1	somatic	0	0.014356170772206	0.0367726686664571
1	229676928	229684416	1	loss	A	-1	somatic	0	0.0060230110148555	0.00938486826778218
1	234776256	234783744	6	gain	AAAABB	22.8578	germline	1	0.00270027803022114	0.00495812184731637
1	236096640	236099136	5	gain	AAABB	11.6164	germline	1	0.0832724427819153	0.270050664836066
1	236099136	236139072	2	neutral	AA	100	somatic	0	0.827654400272072	0.605347766125715
1	248586624	248631552	1	loss	A	-1	germline	1	1.27238576009352e-11	2.1316282072803e-14
2	3179904	3182400	7	gain	-	-1	germline	1	0.0832687843612247	0.27004431093598
2	4165824	4175808	1	loss	A	-1	somatic	0	0.00142352762694002	0.00155748568952074
2	16146624	16149120	1	loss	A	-1	somatic	0	0.0832974454748625	0.270094086074074
2	18143424	18163392	3	gain	AAB	1.84891	germline	1	9.67601141411505e-07	2.26377013801127e-07
2	27196416	27226368	2	neutral	AA	100	somatic	0	0.210201995638898	0.452926243165804
2	33958080	33985536	2	neutral	AA	46.8877	somatic	0	0.126947355496327	0.232345933112131
2	42591744	42614208	2	neutral	AA	36.3786	somatic	0	0.00625578317853696	0.0077209212362449
2	47164416	47171904	2	neutral	AA	100	somatic	0	0.741163384610045	0.935889502228179
2	52520832	52558272	1	loss	A	-1	germline	1	7.06256311727189e-09	1.83714043977545e-10
2	58678464	58690944	2	neutral	AA	100	somatic	0	0.287157380725122	0.277259425862281
2	62083008	62175360	2	neutral	AA	54.6405	somatic	0	0.832780345225571	0.895413741648626
2	63236160	63291072	2	neutral	AA	100	germline	1	0.0109795917430794	0.0506761152516693
2	68952000	68959488	2	neutral	AA	54.5678	somatic	0	0.917875993826514	0.835493199478787
2	70212480	70274880	2	neutral	AA	27.2849	somatic	0	0.426659608933611	0.225482085008207
2	71285760	71300736	2	neutral	AA	54.8546	germline	1	0.0694138351054209	0.0350256968906295
2	73097856	73132800	2	neutral	AA	54.5678	germline	1	0.860898701406194	0.862820878632332
2	85904832	85919808	2	neutral	AA	62.4111	somatic	0	0.850470240421989	0.852367256434136
2	89773632	89781120	6	gain	-	-1	germline	1	0.00270024297357296	0.00495812184731637
2	89781120	89791104	4	gain	-	-1	germline	1	0.0027008915888897	0.00495935719798901
2	89791104	89796096	2	neutral	AA	43.3413	somatic	0	0.1389315614797	0.457749450448091
2	89796096	89808576	4	gain	AABB	4.79214	germline	1	0.000107582163656041	9.08474473785281e-05
2	89811072	89826048	4	gain	AAAA	2.39328	germline	1	2.21095024840969e-05	1.23015518112002e-05
2	89826048	89843520	23	gain	AAAAAAAAAAAAAAABBBBBBBB	4.76976	germline	1	4.59353042341145e-06	1.66344878316238e-06
2	89843520	89851008	4	gain	AABB	15.278	germline	1	0.00270110198118591	0.00495918070204904
2	91411008	91416000	4	gain	-	-1	germline	1	0.0143096304433602	0.0366368472487955
2	96408000	96415488	2	neutral	AA	100	somatic	0	0.774877800295164	0.960857098881149
2	100169472	100254336	2	neutral	AA	100	somatic	0	0.0147616867302849	0.00350839544179293
2	106262208	106269696	0	loss	-	-1	germline	1	0.0143119398601384	0.0366484387384349
2	110121024	110160960	2	neutral	AA	100	somatic	0	0.709902555362466	0.104709020686347
2	120666624	120681600	2	neutral	AA	16.6785	somatic	0	0.597306210486869	0.662473108554092
2	122937984	122982912	2	neutral	AA	71.3397	somatic	0	0.807885155943957	0.482677788637388
2	124507968	124512960	2	neutral	AA	100	somatic	0	0.907732455815799	0.95236427033835
2	130820352	131035008	2	neutral	AA	100	somatic	0	0.321867913343995	0.305040301806703
2	132238080	132243072	2	neutral	AA	12.1262	somatic	0	0.0540906734835818	0.120376578917103
2	132243072	132245568	4	gain	AAAB	4.05321	germline	1	0.0832767111039498	0.270058077857426
2	132270528	132280512	2	neutral	AA	1.45204	somatic	0	0.38210424678006	0.780569634978141
2	134137536	134222400	2	neutral	AA	15.5908	somatic	0	0.0281624096553888	0.0329859227170161
2	135053568	136316544	2	neutral	AA	57.108	somatic	0	0.215828535233963	0.0663663175828257
2	138131136	138201024	2	neutral	AA	100	somatic	0	0.541684401571259	0.761197338250178
2	140916672	141001536	2	neutral	AA	100	somatic	0	0.823093667218975	0.926430251977312
2	146105856	146118336	1	loss	A	-1	germline	1	0.000262785234308031	0.000246457854829574
2	147693312	147820608	2	neutral	AA	100	germline	1	0.941335642743216	0.531003191819216
2	148816512	148836480	2	neutral	AA	18.1936	somatic	0	0.365363253763652	0.804882324225532
2	157415232	157445184	2	neutral	AA	100	somatic	0	0.713265470405462	0.443186566283678
2	159526848	159704064	2	neutral	AA	40.7542	somatic	0	0.78501262527277	0.371734129268176
2	164701056	164840832	2	neutral	AA	100	somatic	0	0.308933197195016	0.159593994699732
2	169787904	169792896	2	neutral	AA	100	somatic	0	0.236356679656279	0.469350945901839
2	176399808	176407296	1	loss	A	-1	somatic	0	0.00402862009379952	0.00949458836948958
2	189883200	189905664	2	neutral	AA	100	somatic	0	0.0415852483291867	0.0415990504209193
2	207487488	207494976	1	loss	A	-1	somatic	0	0.00396923980292771	0.00715901462589974
2	211151616	211174080	2	neutral	AA	100	somatic	0	0.135463101014571	0.351671196935311
2	225625920	225660864	2	neutral	AA	54.5678	somatic	0	0.307795100756903	0.265720683641637
2	229681920	229934016	2	neutral	AA	100	somatic	0	0.812027819892675	0.728435595971724
2	230041344	230068800	2	neutral	AA	54.5681	somatic	0	0.0496973604256285	0.104457277696231
2	232377600	232464960	2	neutral	AA	100	somatic	0	0.766405589771098	0.671618455002784
2	237991104	238128384	2	neutral	AA	9.40636	somatic	0	0.919954507464269	0.678419533038437
3	8404032	8491392	2	neutral	AA	100	germline	1	0.0826878826185957	0.160076964248305
3	22436544	22459008	2	neutral	AA	100	somatic	0	0.0114464365246965	0.159706540342302
3	34993920	35021376	2	neutral	AA	54.5679	somatic	0	0.862181482358344	0.969867844693175
3	35762688	35899968	3	gain	AAB	0.856865	germline	1	8.04601347897789e-34	0
3	56359680	56476992	2	neutral	AA	78.0962	somatic	0	0.507951227877977	0.586839608298106
3	67416960	67489344	2	neutral	AA	57.8609	somatic	0	0.0010479707396912	0.00934515601999941
3	68155776	68168256	2	neutral	AA	100	somatic	0	0.384837413353913	0.503416339795429
3	68687424	68699904	1	loss	A	-1	germline	1	0.000558002922123908	0.000310789759668029
3	75713664	75858432	2	neutral	AA	0.819221	germline	1	0.00573207733706482	0.0272978292515736
3	77780352	77785344	3	gain	AAB	1.08144	somatic	0	0.0143329321235585	0.0366997696022106
3	80553408	80558400	2	neutral	AA	100	somatic	0	0.314610343324397	0.629132285297793
3	90270336	90554880	2	neutral	AA	0.802686	somatic	0	1.60862170568541e-07	0.0002369285184044
3	90559872	90562368	5	gain	-	-1	germline	1	0.0832718330360917	0.270049605845139
3	95746560	95749056	0	loss	-	-1	germline	1	0.0832651260707337	0.270037957145029
3	98681856	98694336	1	loss	A	-1	somatic	0	0.00155720613995266	0.00201754938692522
3	110433024	110450496	2	neutral	AA	100	somatic	0	0.363011171506633	0.216782625720809
3	115542336	115569792	2	neutral	AA	100	somatic	0	0.0363659617923357	0.0495916247356845
3	117294528	117376896	2	neutral	AA	24.5941	somatic	0	0.298726319317701	0.682451056621569
3	127360896	127375872	2	neutral	AA	100	somatic	0	0.00167655688273194	0.00165275896070893
3	128586432	128653824	2	neutral	AA	7.59139	somatic	0	0.572201746347901	0.255509254109586
3	130273728	130281216	2	neutral	AA	100	germline	1	0.896838688129706	0.868051449136316
3	131958528	131988480	2	neutral	AA	100	somatic	0	0.114886979900429	0.247883280398752
3	131988480	131995968	1	loss	A	-1	germline	1	0.0202078064992724	0.0548127521884578
3	146215680	146525184	2	neutral	AA	35.1808	somatic	0	0.0848797631868572	0.0207753921508727
3	149932224	150047040	2	neutral	AA	55.0905	somatic	0	0.00866595570899385	0.0869815176612357
3	152882496	152897472	2	neutral	AA	100	somatic	0	0.40665636354731	0.849675936405763
3	155760384	155792832	3	gain	AAB	45.9692	germline	1	4.29046905727813e-10	1.06379349773533e-11
3	159090048	159127488	2	neutral	AA	54.6331	somatic	0	0.63364287833516	0.928569762206897
3	162794112	162908928	1	loss	A	-1	germline	1	4.21270496244083e-28	0
3	179966592	180036480	2	neutral	AA	27.2885	somatic	0	0.202139553995904	0.16600729149859
3	190017984	190022976	1	loss	A	-1	germline	1	0.0203540829432446	0.0553319758332809
3	193157952	193167936	1	loss	A	-1	germline	1	0.00133144613271447	0.00147375889051005
3	196400256	196467648	2	neutral	AA	32.5973	somatic	0	8.14839961250848e-05	1.8435632178404e-05
4	554112	556608	4	gain	-	-1	germline	1	0.0832791502246827	0.270062313936323
4	12150528	12160512	1	loss	A	-1	somatic	0	0.0018879276610517	0.00235991767042498
4	31814016	31819008	0	loss	-	-1	germline	1	0.0143303306915627	0.0367044127787471
4	40292928	40295424	4	gain	-	-1	germline	1	0.0832742720410865	0.270053841827032
4	46198464	46203456	1	loss	A	-1	germline	1	0.0279514257194821	0.0798400674503622
4	49146240	49156224	49	gain	-	-1	somatic	0	0.00269985737789011	0.00495759249766881
4	49652928	49657920	21	gain	-	-1	somatic	0	0.014306166934557	0.0366316321250704
4	63268608	63288576	1	loss	A	-1	germline	1	6.13538555388221e-06	1.17893676265801e-06
4	63847680	63850176	0	loss	-	-1	germline	1	0.0832785404390742	0.270061254912057
4	68517696	68622528	1	loss	A	-1	germline	1	1.29986828057213e-18	0
4	69266496	69366336	1	loss	A	-1	somatic	0	3.69330610227175e-08	2.290787004533e-08
4	70619328	70624320	1	loss	A	-1	germline	1	0.0189775209403629	0.0486856670953008
4	74560512	74563008	0	loss	-	-1	germline	1	0.0832724427819153	0.270050664836071
4	106134912	106142400	1	loss	A	-1	germline	1	0.00462111466106905	0.00948863369772701
4	160125888	160150848	1	loss	A	-1	germline	1	4.02262208954691e-07	2.89592291258245e-08
4	171452736	171460224	1	loss	A	-1	germline	1	0.0228006109574777	0.0631194014606457
4	172066752	172071744	1	loss	A	-1	somatic	0	0.0202448927256449	0.0500713780505838
4	172503552	172513536	1	loss	A	-1	germline	1	0.00131406281791616	0.00160848823434256
4	185520192	185522688	0	loss	-	-1	germline	1	0.0832651260707337	0.270037957145029
4	189271680	189279168	1	loss	A	-1	germline	1	0.00718939549187815	0.00942567973811903
5	414336	416832	4	gain	AABB	24.0609	germline	1	0.0832742720410865	0.270053841827032
5	5903040	5935488	2	neutral	AA	18.0071	somatic	0	0.406774190806859	0.72773592062887
5	6983808	7006272	2	neutral	AA	54.7122	somatic	0	0.567604024056012	0.538942265132476
5	10345920	10348416	1	loss	A	-1	germline	1	0.083288297442847	0.270078199664166
5	11743680	11776128	2	neutral	AA	44.7686	somatic	0	0.570904536471668	0.873810469118939
5	14519232	14656512	2	neutral	AA	67.708	somatic	0	0.0964954614741755	0.0796871950390299
5	17342208	17357184	1	loss	A	-1	germline	1	0.000268491882411698	0.000257614518799243
5	18180864	18215808	2	neutral	AA	36.3786	somatic	0	0.189944207541233	0.288070524794306
5	18562752	18682560	2	neutral	AA	100	somatic	0	0.523175308110808	0.884279421566631
5	22661184	22761024	2	neutral	AA	28.6721	somatic	0	0.174945625457722	0.0681071408011318
5	24677952	24725376	2	neutral	AA	100	germline	1	0.638416782471831	0.685501814604308
5	25162176	25344384	2	neutral	AA	27.3024	germline	1	0.418462799293513	0.530232587067088
5	26792064	26802048	1	loss	A	-1	germline	1	0.00154966495434925	0.00188622267828165
5	32742528	32947200	2	neutral	AA	14.335	somatic	0	0.026644195541154	0.0576696750297485
5	38937600	38942592	2	neutral	AA	54.5679	somatic	0	0.327383231229052	0.598729688005547
5	45372288	45377280	1	loss	A	-1	germline	1	0.0199978869239191	0.0541897703133964
5	46273344	46275840	0	loss	-	-1	germline	1	0.0832651260707337	0.270037957145029
5	46323264	46405632	2	neutral	AA	28.8983	somatic	0	0.087828292888018	0.58675153643808
5	46405632	46410624	1	loss	A	-1	germline	1	0.0143194477354581	0.036661193082995
5	50938368	50943360	1	loss	A	-1	germline	1	0.0290717096097517	0.0560629775656638
5	52910208	52912704	1	loss	A	-1	germline	1	0.0832846384579218	0.270071845291183
5	55149120	55186560	2	neutral	AA	100	somatic	0	0.608103114381574	0.924824405909284
5	55423680	55426176	2	neutral	AA	100	somatic	0	0.364004528684481	0.606947444421569
5	55428672	55458624	2	neutral	AA	100	somatic	0	0.191226911735936	0.258239344581578
5	58451328	58471296	2	neutral	AA	100	somatic	0	0.0722853318213524	0.146136239700486
5	59988864	60018816	2	neutral	AA	100	somatic	0	0.410491898420202	0.692889326244541
5	60193536	60201024	1	loss	A	-1	germline	1	0.00637313813049831	0.00934023412303797
5	60610368	60702720	2	neutral	AA	91.4075	somatic	0	0.00574213473123591	0.0150927909478413
5	60702720	60707712	1	loss	A	-1	germline	1	0.043549674034744	0.132218706487308
5	61102080	61269312	2	neutral	AA	100	somatic	0	0.742608728100768	0.387443616425612
5	84651840	84659328	0	loss	-	-1	germline	1	0.014307321355316	0.036635108802048
5	86419008	86421504	0	loss	-	-1	germline	1	0.0832785404390742	0.270061254912057
5	86918208	86923200	1	loss	A	-1	germline	1	0.0146023371777947	0.0375160493447519
5	88478208	88485696	2	neutral	AA	100	somatic	0	0.836864503273652	0.822408314181909
5	89773632	89791104	2	neutral	AA	100	somatic	0	0.418545109521038	0.586191678057997
5	92342016	92347008	1	loss	A	-1	germline	1	0.0153303521485874	0.0397302973895438
5	99008832	99011328	0	loss	-	-1	germline	1	0.0832730525313556	0.270051723830028
5	100676160	100708608	2	neutral	AA	36.4701	somatic	0	0.668350844175007	0.694085235165323
5	100780992	100795968	2	neutral	AA	100	germline	1	0.489673728035989	0.920829083771232
5	106384512	106389504	1	loss	A	-1	somatic	0	0.0648091724573219	0.20560654417841
5	110138496	110153472	3	gain	AAB	100	germline	1	2.23921416229923e-05	1.275595548067e-05
5	116575680	116633088	2	neutral	AA	93.0521	somatic	0	0.232493456391693	0.232316557150761
5	118537536	118545024	1	loss	A	-1	germline	1	0.0231504603583845	0.0560571101685751
5	120045120	120050112	1	loss	A	-1	germline	1	0.0234401923414799	0.0504972448486956
5	123012864	123045312	2	neutral	AA	54.5678	somatic	0	0.0590250622745033	0.176984227182053
5	125845824	125853312	1	loss	A	-1	germline	1	0.00718205556196944	0.0113416714768797
5	132235584	132283008	2	neutral	AA	36.3839	somatic	0	0.00180245940110378	0.0107357365061884
5	133783104	133790592	2	neutral	AA	100	somatic	0	0.499535268791435	0.876828463513911
5	135670080	135682560	2	neutral	AA	100	somatic	0	0.0276594644476628	0.13575161613278
5	137517120	137522112	1	loss	A	-1	germline	1	0.0232771416605738	0.0540389400197369
5	138750144	139626240	2	neutral	AA	51.3515	somatic	0	0.0856334975258521	0.024152707959424
5	139626240	139653696	2	neutral	AA	54.5678	somatic	0	0.698788490246733	0.930995983366807
5	145738944	145743936	1	loss	A	-1	germline	1	0.0271843925489727	0.0565096036748101
5	150795840	150803328	1	loss	A	-1	somatic	0	0.00774519889820972	0.0137499748280904
5	150823296	150843264	1	loss	A	-1	germline	1	6.53203380953609e-06	1.173405082322e-06
5	152011392	152043840	2	neutral	AA	36.4714	germline	1	0.96105993143061	0.631569366650802
5	154337664	154372608	2	neutral	AA	100	somatic	0	0.67692237599898	0.445935099127026
5	162284928	162349824	2	neutral	AA	57.4407	somatic	0	0.798252811189956	0.854919652285831
5	163061184	163133568	2	neutral	AA	88.6064	somatic	0	0.126422888393178	0.399962719357972
5	164104512	164174400	2	neutral	AA	37.768	somatic	0	0.5002177912927	0.696542792990649
5	168165504	168182976	2	neutral	AA	100	germline	1	0.509814562279373	0.770151191847523
5	178583808	178586304	5	gain	AAABB	9.66166	germline	1	0.0832718330360917	0.270049605845139
5	180950016	181002432	1	loss	A	-1	germline	1	1.02177374306493e-13	1.11022302462516e-16
6	257088	297024	3	gain	-	-1	germline	1	1.98396827282873e-11	1.88404847278889e-13
6	297024	369408	4	gain	-	-1	germline	1	4.9718984094116e-20	0
6	371904	374400	6	gain	-	-1	germline	1	0.0832706135552948	0.270047487872382
6	374400	381888	4	gain	-	-1	germline	1	0.00270108444792259	0.00495918070204904
6	32487936	32527872	0	loss	-	-1	germline	1	9.22041483440464e-09	5.58367019287687e-10
6	32532864	32587776	1	loss	A	-1	germline	1	0.000119585179851617	6.18711920611359e-05
6	35787648	35797632	3	gain	-	-1	germline	1	0.00053330912297041	0.000672391292595442
6	60235968	60240960	4	gain	-	-1	germline	1	0.0143106888852415	0.0366409039052361
6	72151872	72156864	1	loss	A	-1	somatic	0	0.0214663758814558	0.0553738452344086
6	73881600	73894080	1	loss	A	-1	germline	1	0.000434604669540504	0.000290155844909878
6	78257088	78326976	1	loss	A	-1	germline	1	6.2654471081627e-18	0
6	95307264	95314752	1	loss	A	-1	somatic	0	0.00537108003314507	0.00945827510376718
6	96954624	96974592	2	neutral	AA	100	somatic	0	0.94739227751545	0.643119739086936
6	101424960	101449920	2	neutral	AA	100	somatic	0	0.875242901229546	0.809398888411813
6	101909184	101919168	2	neutral	AA	54.5679	somatic	0	0.0587330527746141	0.122803498072352
6	111204288	111209280	2	neutral	AA	100	somatic	0	0.592545150803533	0.604631585674586
6	122713344	122750784	2	neutral	AA	100	somatic	0	0.150417282360753	0.397903900870668
6	130318656	130493376	2	neutral	AA	49.3267	somatic	0	0.193775737365034	0.114136743927649
6	132535104	132547584	2	neutral	AA	54.5678	somatic	0	0.172936828142546	0.354278782063709
6	139346688	139359168	2	neutral	AA	100	somatic	0	0.199152639677065	0.383557468428183
6	139488960	139498944	2	neutral	AA	100	somatic	0	0.916330194765499	0.99967373799132
6	144071616	144099072	2	neutral	AA	100	somatic	0	0.467798917729041	0.767702205447622
6	155428416	155460864	2	neutral	AA	100	somatic	0	0.8518257169975	0.80528633217969
6	155493312	155772864	2	neutral	AA	49.2413	germline	1	0.406429472076051	0.36247925413584
6	156718848	156746304	2	neutral	AA	54.5679	somatic	0	0.62298885390366	0.955911489889807
6	157312896	157315392	6	gain	AAAABB	3.39635	germline	1	0.0832687843612247	0.27004431093598
6	160432896	160590144	2	neutral	AA	12.0368	somatic	0	0.00356802230206639	0.0171861587591255
6	160657536	160670016	2	neutral	AA	6.19437	germline	1	0.389441742778522	0.283761391873842
6	161508672	161658432	2	neutral	AA	13.3638	germline	1	0.980722189588334	0.945119793725186
6	165310080	165320064	1	loss	A	-1	germline	1	0.0165863660805159	0.0435206811844077
6	167541504	167556480	3	gain	AAB	10.9763	germline	1	2.21883083452858e-05	1.23873530443186e-05
6	167556480	167801088	3	gain	AAB	0.489567	germline	1	1.73290040471806e-51	0
6	167801088	167803584	3	gain	-	-1	germline	1	0.0833242843975837	0.270140690144647
7	9761856	9766848	1	loss	A	-1	germline	1	0.0205292616624482	0.0558813336322878
7	16131648	16134144	0	loss	-	-1	germline	1	0.0832706135552948	0.270047487872387
7	20277504	20280000	0	loss	-	-1	germline	1	0.0832779306570825	0.270060195890817
7	26095680	26105664	1	loss	A	-1	germline	1	0.00103527557053475	0.00160173004490638
7	31274880	31279872	1	loss	A	-1	germline	1	0.0144631474661684	0.0371000871162027
7	54395328	54397824	0	loss	-	-1	germline	1	0.0832742720410865	0.270053841827037
7	57485376	57497856	3	gain	-	-1	germline	1	0.000108709669535234	9.31008830991065e-05
7	58061952	58066944	3	gain	-	-1	germline	1	0.0143129984527025	0.0366435119633288
7	60929856	61099584	3	gain	-	-1	somatic	0	1.59794444408267e-14	2.22044604925031e-16
7	61099584	61107072	3	gain	AAA	2.97989	somatic	0	0.015491098043974	0.0401835009032117
7	61107072	62300160	2	neutral	AA	7.79603	germline	1	1.28215289785446e-09	3.32169636840796e-06
7	62300160	62302656	4	gain	-	-1	germline	1	0.0832797600139081	0.270063372963626
7	62302656	62357568	3	gain	AAB	0.447705	somatic	0	5.4323678771554e-09	1.26098709252176e-09
7	62402496	62407488	4	gain	-	-1	germline	1	0.0143090531405319	0.0366368472487955
7	62437440	62454912	3	gain	AAB	2.50404	germline	1	8.36210609652683e-05	0.00119270459623233
7	62519808	62542272	2	neutral	AA	3.88376	germline	1	0.875884727649698	0.565963997164506
7	62542272	62544768	0	loss	-	-1	germline	1	0.0832693940889647	0.270045369911754
7	75718656	75738624	3	gain	AAB	12.2442	germline	1	1.29402378718751e-05	6.69679138394219e-05
7	80650752	80668224	2	neutral	AA	100	germline	1	0.986302388101386	0.813016619316387
7	86633664	86666112	2	neutral	AA	100	somatic	0	0.105688788407843	0.156167632370126
7	90180480	90182976	0	loss	-	-1	germline	1	0.0832724427819153	0.270050664836071
7	94735680	94748160	2	neutral	AA	100	germline	1	0.570057892850524	0.550445592173395
7	100948224	100955712	3	gain	AAB	0.721205	germline	1	0.00270438253008581	0.00496783577753535
7	100955712	100960704	9	gain	AAAAABBBB	1.88508	germline	1	0.0143066479332205	0.0366327909853192
7	100960704	100975680	3	gain	AAB	0.472058	germline	1	2.21632989574029e-05	1.2352143492711e-05
7	106099968	106102464	3	gain	AAA	18.0169	germline	1	0.0832858581050953	0.27007396340338
7	106524288	106559232	2	neutral	AA	12.1335	somatic	0	0.917243591717448	0.698524201336793
7	109811520	109814016	0	loss	-	-1	germline	1	0.0832669551997044	0.270041134026866
7	143846976	143849472	5	gain	AAABB	32.2725	germline	1	0.0832724427819153	0.270050664836066
7	147738240	147743232	2	neutral	AA	100	somatic	0	0.93664452943479	0.993216132977288
7	152400768	152403264	6	gain	AAAAAB	7.12806	germline	1	0.0832693940889647	0.270045369911749
7	152403264	152408256	9	gain	AAAAAAABB	3.75625	germline	1	0.0143065517323465	0.03663250126725
7	154599744	154609728	1	loss	A	-1	germline	1	0.00122523859610709	0.00159337894312861
7	157542528	157622400	2	neutral	AA	4.71852	somatic	0	0.0472316817949069	0.044506211343622
7	158149056	158151552	8	gain	AAAABBBB	98.6445	germline	1	0.0832675649165946	0.270042192993536
7	158593344	158595840	3	gain	AAB	25.1997	germline	1	0.0832852482797	0.270072904345763
8	643968	678912	2	neutral	AA	20.324	somatic	0	0.315242009910192	0.711518248013446
8	3928704	3933696	1	loss	A	-1	somatic	0	0.0207869841671563	0.0562005934965499
8	12886848	12929280	2	neutral	AA	22.0129	somatic	0	0.0117530526092556	0.0684810491252578
8	16343808	16351296	1	loss	A	-1	somatic	0	0.00536774137670825	0.00943318455895292
8	16403712	16416192	1	loss	A	-1	germline	1	0.000307309718756826	0.000271406081226999
8	25114752	25132224	1	loss	A	-1	germline	1	9.78613289286681e-06	4.75881630823682e-06
8	25396800	25544064	2	neutral	AA	81.3576	somatic	0	0.0068563655087404	0.00580679479249879
8	28307136	28332096	2	neutral	AA	95.5571	somatic	0	0.0807836233186478	0.132411876320575
8	30029376	30036864	2	neutral	AA	100	somatic	0	0.81341408691866	0.674003447665959
8	32378112	32385600	2	neutral	AA	100	somatic	0	0.860142349788391	0.883779221311822
8	37075584	37120512	2	neutral	AA	54.5873	somatic	0	0.101391600335289	0.117327214140915
8	38071488	38076480	1	loss	A	-1	somatic	0	0.0215115872832453	0.0589541072834274
8	38076480	38078976	2	neutral	AA	55.5268	somatic	0	0.215453376245832	0.453874350883223
8	39374400	39529152	1	loss	A	-1	germline	1	1.7443273341192e-35	0
8	42332160	42337152	0	loss	-	-1	germline	1	0.0143086682833937	0.0366377164992376
8	42337152	42364608	2	neutral	AA	100	somatic	0	0.454278990384692	0.496823212100108
8	43235712	43238208	5	gain	AAAAA	6.03784	germline	1	0.0832718330360917	0.270049605845139
8	43238208	43240704	8	gain	AAAAABBB	5.10645	germline	1	0.0832675649165946	0.270042192993536
8	43240704	43243200	6	gain	AAAABB	4.47447	germline	1	0.0832687843612247	0.27004431093598
8	43655040	43660032	3	gain	AAA	14.0611	somatic	0	0.0143201216889952	0.0366545255548892
8	43774848	43782336	3	gain	AAB	41.1807	somatic	0	0.00272730698823237	0.00503512998073052
8	43914624	43937088	2	neutral	AA	24.1725	somatic	0	0.480223818104814	0.544200486897137
8	46492992	46497984	1	loss	A	-1	somatic	0	0.0264415151591192	0.0571695042015646
8	46612800	46627776	3	gain	AAA	72.2587	germline	1	2.21540481445373e-05	1.2315568869492e-05
8	48023040	48070464	2	neutral	AA	100	somatic	0	0.0897872383333265	0.224528375736493
8	50119680	50127168	1	loss	A	-1	somatic	0	0.00573428365219507	0.0095350846395289
8	66059136	66064128	2	neutral	AA	54.5678	somatic	0	0.0638311358219946	0.108118645504003
8	73819200	73929024	2	neutral	AA	36.7221	somatic	0	0.00530168613001972	0.0136667210904272
8	74448192	74455680	1	loss	A	-1	germline	1	0.0248156752231965	0.0694675111698809
8	75224448	75239424	2	neutral	AA	36.3854	somatic	0	0.571129116408879	0.853538906130417
8	86174400	86181888	1	loss	A	-1	germline	1	0.00602998522999448	0.00987387704290554
8	90874368	91236288	2	neutral	AA	97.9239	somatic	0	2.41457150637165e-06	0.000204549463767911
8	92007552	92067456	2	neutral	AA	37.6512	somatic	0	0.975629096647348	0.944808581115447
8	94877952	94955328	2	neutral	AA	100	somatic	0	0.865186307185383	0.789951959416286
8	118128192	118143168	2	neutral	AA	100	somatic	0	0.376951198510194	0.171418873932706
8	120918720	120921216	1	loss	A	-1	somatic	0	0.0836132454367423	0.270642054601972
8	123514560	123542016	2	neutral	AA	100	somatic	0	0.187018249441532	0.105075875008676
8	127777728	127787712	2	neutral	AA	36.3787	somatic	0	0.748494956996947	0.978987475806043
8	130885248	130975104	2	neutral	AA	30.31	somatic	0	0.0228959470427762	0.037242981878391
8	136146816	136151808	1	loss	A	-1	germline	1	0.0156408335416374	0.0406773826058526
8	136339008	136453824	2	neutral	AA	100	somatic	0	0.0908663969483574	0.0678458399715666
8	137357376	137377344	2	neutral	AA	54.5679	somatic	0	0.172793846032059	0.360814971390676
8	138206016	138211008	2	neutral	AA	4.38931	somatic	0	0.456903443839818	0.699585859940161
8	139746048	139800960	2	neutral	AA	11.4126	somatic	0	0.000149680352338367	3.93155326983141e-05
8	139960704	139963200	0	loss	-	-1	germline	1	0.0832693940889647	0.270045369911754
8	143619840	143632320	1	loss	A	-1	germline	1	0.00079298802144948	0.00102362114684984
8	144124032	144126528	6	gain	AAAAAB	24.474	germline	1	0.0832693940889647	0.270045369911749
8	144129024	144153984	2	neutral	AA	100	somatic	0	0.638428862380286	0.425624156550782
9	23362560	23377536	1	loss	A	-1	germline	1	6.64315602888007e-05	3.81397443737219e-05
9	33793344	33803328	3	gain	-	-1	somatic	0	0.000675515472598193	0.00118013164157438
9	40911936	40916928	6	gain	-	-1	germline	1	0.014307321355316	0.0366333704274724
9	40921920	40924416	5	gain	-	-1	germline	1	0.0832718330360917	0.270049605845139
9	40924416	40929408	6	gain	-	-1	somatic	0	0.014307321355316	0.0366333704274724
9	42387072	42389568	6	gain	AAABBB	10.6528	somatic	0	0.0832693940889647	0.270045369911749
9	69121728	69124224	1	loss	A	-1	germline	1	0.103662380472373	0.303834766324187
9	81102528	81137472	2	neutral	AA	32.5015	somatic	0	0.513429416441044	0.520878900786086
9	102805248	102832704	2	neutral	AA	100	somatic	0	0.398991120790397	0.556006191234598
9	103012416	103014912	0	loss	-	-1	germline	1	0.0832748818013771	0.270054900830089
9	110260800	110268288	1	loss	A	-1	germline	1	0.00587197318825555	0.00963054462826241
9	117077376	117104832	2	neutral	AA	36.3786	somatic	0	0.240029039915815	0.58142971029981
9	118742208	118762176	2	neutral	AA	37.0497	somatic	0	0.538847706439687	0.76538334483656
9	128648832	128651328	1	loss	A	-1	somatic	0	0.0832870777667369	0.270076081527713
9	128716224	128838528	2	neutral	AA	16.5363	somatic	0	0.000758010577388482	0.00185020257952917
9	129422592	129440064	3	gain	AAB	0.684675	germline	1	4.80260630962677e-06	1.97559434267358e-06
9	134087616	134107584	2	neutral	AA	36.3791	somatic	0	0.156024764092432	0.360917112727341
9	137007936	137105280	2	neutral	AA	7.10874	somatic	0	0.460184716727344	0.113984031655756
9	137354880	137357376	3	gain	AAB	56.3017	somatic	0	0.0832852482797	0.270072904345763
10	4665024	4670016	1	loss	A	-1	somatic	0	0.0210047111060623	0.0564286319508815
10	20562048	20567040	1	loss	A	-1	somatic	0	0.0208042788685959	0.0476732875296951
10	21717696	21822528	2	neutral	AA	14.7792	somatic	0	0.422924613119206	0.434062350956951
10	26569920	26659776	2	neutral	AA	2.79277	somatic	0	0.0017669197067894	0.00639572609251271
10	26936832	26941824	3	gain	AAA	15.8634	germline	1	0.0143263811653118	0.0366797517894533
10	28372032	28377024	1	loss	A	-1	somatic	0	0.0217862693692201	0.0596066060714675
10	38483328	38485824	2	neutral	AA	18.1896	germline	1	0.0844689615037014	0.272122530636396
10	38485824	38490816	3	gain	AAA	13.9328	somatic	0	0.0143164634203891	0.0366493082294939
10	38490816	38525760	2	neutral	AA	0.560991	germline	1	3.91058216408814e-09	4.81662492113344e-08
10	38525760	38528256	10	gain	AAAAAAAAAB	6.747	germline	1	0.083265735776774	0.270039016102605
10	38573184	38578176	3	gain	AAA	21.0708	germline	1	0.0162738535582252	0.0425880888341786
10	38578176	38580672	5	gain	AAAAA	3.8854	germline	1	0.0832724427819153	0.270050664836066
10	38580672	38827776	2	neutral	AA	0.815217	somatic	0	1.92102284226986e-11	5.94208016124753e-11
10	38827776	39559104	2	neutral	AA	4.99453	germline	1	2.80823103602459e-12	3.47875506179207e-09
10	39559104	39561600	0	loss	-	-1	germline	1	0.0832681746371013	0.270043251963248
10	41857920	41860416	37	gain	AAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBB	42.0441	germline	1	0.0832651260707337	0.270037957145024
10	41860416	41882880	16	gain	AAAAAAAAAAABBBBB	4.61037	germline	1	0.002699874903875	0.00495765131173787
10	41887872	41890368	37	gain	-	-1	germline	1	0.0832651260707337	0.270037957145024
10	46515456	46560384	4	gain	AABB	0.509816	germline	1	4.27390225911321e-12	2.54241072639161e-14
10	50149632	50152128	1	loss	A	-1	germline	1	0.0843074767990317	0.271843628354697
10	76494912	76502400	1	loss	A	-1	germline	1	0.0147062956236937	0.0377709115162883
10	81120000	81132480	1	loss	A	-1	germline	1	0.000336921225610124	0.000264947189308473
10	82370496	82410432	2	neutral	AA	27.2852	somatic	0	0.407723165934316	0.248183716388419
10	95110080	95115072	1	loss	A	-1	somatic	0	0.0254289681801724	0.053074726383627
10	103249536	103252032	3	gain	AAB	17.6656	somatic	0	0.0833004949997319	0.270099381695611
10	106269696	106274688	1	loss	A	-1	somatic	0	0.0220681472617006	0.0607279123108582
10	110225856	110228352	1	loss	A	-1	somatic	0	0.0921368045446085	0.285119317359292
10	112352448	112357440	1	loss	A	-1	somatic	0	0.0259462990145119	0.0547244345857483
10	128464128	128466624	5	gain	AAABB	12.5877	germline	1	0.0832718330360917	0.270049605845139
10	131114880	131347008	2	neutral	AA	36.4048	somatic	0	0.00632706591952607	0.034747129281522
10	132362880	132365376	5	gain	AAABB	16.2554	germline	1	0.0832724427819153	0.270050664836066
10	133316352	133318848	1	loss	A	-1	somatic	0	0.0833401470532759	0.270168231672314
11	4947072	4954560	1	loss	A	-1	germline	1	0.00555215156853123	0.0089707182196096
11	19289088	19321536	2	neutral	AA	36.3859	somatic	0	0.0830183349388837	0.205212114025083
11	20509632	20534592	2	neutral	AA	54.5678	somatic	0	0.0288624182068672	0.0326603597033914
11	34095360	34165248	2	neutral	AA	93.3305	somatic	0	0.323279664931093	0.190760038601502
11	37347648	37352640	1	loss	A	-1	somatic	0	0.0279369322019802	0.0623637851680653
11	37649664	37662144	2	neutral	AA	100	somatic	0	0.27195960855131	0.469580094145833
11	42946176	42948672	3	gain	AAB	36.3223	somatic	0	0.0832907368384725	0.270082435973445
11	50174592	50179584	1	loss	A	-1	germline	1	0.0212230631421916	0.056465309897191
11	54929472	54936960	3	gain	AAB	7.24638	germline	1	0.00270345237934473	0.00496288832617908
11	55184064	55216512	1	loss	A	-1	germline	1	3.16601510065556e-07	3.68737550493492e-08
11	62060544	62070528	2	neutral	AA	54.5678	somatic	0	0.127046102155635	0.0707697003132102
11	68248128	68517696	2	neutral	AA	39.8955	somatic	0	0.330144128548778	0.111148430291538
11	69915456	69925440	2	neutral	AA	54.8425	germline	1	0.309960814764389	0.230921950395254
11	73187712	73197696	2	neutral	AA	100	germline	1	0.990690636398418	0.917924171310451
11	73971456	74013888	2	neutral	AA	100	somatic	0	0.848118612139156	0.847570451857445
11	78501696	78574080	2	neutral	AA	76.941	germline	1	0.696940030819397	0.756621976701619
11	85635264	85647744	1	loss	A	-1	germline	1	0.000380269121509658	0.000271001245663371
11	94678272	94743168	2	neutral	AA	100	somatic	0	0.00370589081341335	0.02111838859652
11	118233024	118267968	2	neutral	AA	54.5678	somatic	0	0.293134205123086	0.119841855704741
11	121939584	122191680	2	neutral	AA	100	germline	1	0.136516997607761	0.374167469023858
11	124839936	124847424	2	neutral	AA	36.7139	somatic	0	0.680223192549404	0.787390560223457
11	131264640	131267136	0	loss	-	-1	germline	1	0.083281589403286	0.270066550063727
12	2253888	2256384	6	gain	-	-1	germline	1	0.0832693940889647	0.270045369911749
12	18096000	18100992	1	loss	A	-1	germline	1	0.0207827125045099	0.0566105361261563
12	29689920	29694912	1	loss	A	-1	somatic	0	0.027469831910983	0.0560654923260737
12	30084288	30091776	1	loss	A	-1	germline	1	0.00451582150311628	0.00966302488609805
12	34691904	34696896	1	loss	A	-1	germline	1	0.0271184145526666	0.056846789322654
12	37617216	37624704	1	loss	A	-1	germline	1	0.00528759265761617	0.00914776722897714
12	37689600	37742016	2	neutral	AA	7.40765	somatic	0	0.000155384439474232	0.000338282876888307
12	37829376	37831872	7	gain	AAAAAAB	75.385	germline	1	0.0832687843612247	0.27004431093598
12	37831872	37834368	5	gain	AAABB	17.1703	germline	1	0.0832724427819153	0.270050664836066
12	39711360	39713856	1	loss	A	-1	germline	1	0.0833029346847406	0.270103618247415
12	45509568	45517056	1	loss	A	-1	somatic	0	0.0058470582126288	0.00958839310222204
12	48639552	48674496	2	neutral	AA	86.6294	somatic	0	0.320681236744069	0.674435273881781
12	58126848	58191744	2	neutral	AA	28.8724	somatic	0	0.261668705672707	0.445473763548186
12	59542080	59552064	1	loss	A	-1	germline	1	0.00138261760022676	0.00151740258312794
12	64204608	64304448	2	neutral	AA	53.1622	somatic	0	0.0360954245912113	0.015586980168705
12	64489152	64501632	2	neutral	AA	36.3915	somatic	0	0.282358458051069	0.534859927215769
12	65023296	65245440	2	neutral	AA	36.3861	somatic	0	0.13035643289131	0.560063211175851
12	67312128	67334592	2	neutral	AA	100	somatic	0	0.0382078180024817	0.218152160976759
12	70075200	70162560	2	neutral	AA	27.2214	somatic	0	0.557192217242052	0.665201679246751
12	71208384	71210880	0	loss	-	-1	germline	1	0.0832663454864309	0.270040075063222
12	71962176	71964672	1	loss	A	-1	somatic	0	0.0832986652739582	0.270096204313596
12	75855936	75903360	2	neutral	AA	54.5693	somatic	0	0.419729090663907	0.330633740872347
12	79762176	79769664	3	gain	AAB	100	germline	1	0.00270454050925322	0.00496465475438435
12	86032128	86037120	1	loss	A	-1	somatic	0	0.0228692826168533	0.0523821820349107
12	91520832	91535808	1	loss	A	-1	germline	1	9.67918350180851e-05	4.36536971607504e-05
12	96824832	96829824	1	loss	A	-1	germline	1	0.0217718098382381	0.0598172055143001
12	99178560	99385728	2	neutral	AA	54.5678	somatic	0	0.00168901904935962	0.0176618853586228
12	107809728	107827200	2	neutral	AA	100	somatic	0	0.708790333789789	0.875443337391426
12	120926208	120931200	1	loss	A	-1	somatic	0	0.0222243124375929	0.0612672619375985
12	125164416	125204352	2	neutral	AA	64.9247	somatic	0	0.716789420887306	0.647835011091408
12	130703040	130723008	2	neutral	AA	100	somatic	0	0.552620983213071	0.502330926904533
13	22019712	22024704	1	loss	A	-1	germline	1	0.0165176254138651	0.0433623488932312
13	23058048	23063040	1	loss	A	-1	germline	1	0.015178372065951	0.0390968654069072
13	39359424	39361920	1	loss	A	-1	germline	1	0.083450032536331	0.270358959994098
13	45422208	45437184	1	loss	A	-1	somatic	0	0.000348002523156382	0.000665760141791982
13	50494080	50501568	1	loss	A	-1	germline	1	0.00614086683879918	0.00967221500992832
13	53661504	53666496	1	loss	A	-1	germline	1	0.0195094193079068	0.0482800516063163
13	61960704	61963200	1	loss	A	-1	germline	1	0.0871767312976335	0.276768532479622
13	63028992	63058944	3	gain	-	-1	germline	1	3.95498415883036e-08	7.40654226838444e-09
13	63058944	63068928	4	gain	-	-1	germline	1	0.000532583201837035	0.000671796017396642
13	82590144	82597632	1	loss	A	-1	germline	1	0.00450782350385276	0.00957423689984149
13	86753472	86758464	2	neutral	AA	54.5728	somatic	0	0.0475140397765072	0.0903676766756282
13	93587520	93592512	2	neutral	AA	100	somatic	0	0.366850985350783	0.673845428091815
13	98601984	98606976	1	loss	A	-1	germline	1	0.0145211384426139	0.0370058622527208
13	104015808	104025792	2	neutral	AA	100	germline	1	0.912134283744138	0.735488413170254
13	105031680	105186432	2	neutral	AA	54.8359	somatic	0	0.770599149252478	0.786321564072427
13	108608448	108613440	2	neutral	AA	100	somatic	0	0.277377361612876	0.616707595146953
13	108755712	108770688	2	neutral	AA	54.5678	somatic	0	0.967210391320057	0.574811286170172
13	109020288	109025280	1	loss	A	-1	germline	1	0.0272657084102965	0.0564526600151857
13	114154560	114157056	1	loss	A	-1	germline	1	0.0834347636500713	0.270332464075329
14	0	16091712	3	gain	AAB	-1	germline	1	NA	NA
14	16091712	16094208	11	gain	-	-1	germline	1	0.083265735776774	0.270039016102605
14	16094208	16096704	5	gain	-	-1	germline	1	0.0832718330360917	0.270049605845139
14	16096704	18487872	3	gain	AAB	-1	somatic	0	NA	NA
14	18490368	18660096	3	gain	AAB	-1	somatic	0	NA	NA
14	18660096	19955520	3	gain	AAB	0.454342	somatic	0	4.05113186999856e-31	0
14	33316608	33349056	2	neutral	AA	100	germline	1	0.023519986561723	0.0451997060051812
14	34347456	34352448	1	loss	A	-1	germline	1	0.0214769498508451	0.0564990548291143
14	34497216	34584576	2	neutral	AA	33.9466	somatic	0	0.00157687349918677	0.00193108579066692
14	37290240	37292736	2	neutral	AA	100	somatic	0	0.847261653728869	0.91709398524804
14	37300224	37302720	1	loss	A	-1	germline	1	0.0832974454748625	0.270094086074074
14	49885056	49910016	2	neutral	AA	100	somatic	0	0.591057186929712	0.922416606334722
14	52044096	52099008	2	neutral	AA	100	germline	1	0.170265602478034	0.27775820405148
14	52528320	52530816	1	loss	A	-1	germline	1	0.0840964451643606	0.271478815394242
14	52887744	52892736	2	neutral	AA	100	somatic	0	0.615947140321152	0.808996062377372
14	54243072	54248064	1	loss	A	-1	germline	1	0.0152468169055999	0.0394744355645074
14	55441152	55448640	2	neutral	AA	100	somatic	0	0.716486953947524	0.981468595511298
14	58680960	58728384	2	neutral	AA	100	somatic	0	0.242702496386449	0.108364133830911
14	60433152	60435648	1	loss	A	-1	germline	1	0.087008547878061	0.276479714983499
14	60949824	60964800	2	neutral	AA	100	somatic	0	0.949182922041177	0.954608786510558
14	64536576	65038272	2	neutral	AA	35.7252	somatic	0	0.588093735972856	0.0891184277609033
14	77390976	77403456	2	neutral	AA	100	somatic	0	0.814115874590277	0.645417991341735
14	82675008	82677504	1	loss	A	-1	somatic	0	0.086548337191932	0.275694118453647
14	86224320	86296704	2	neutral	AA	32.2087	somatic	0	0.541142603212627	0.615222774454117
14	87282624	87345024	2	neutral	AA	40.1802	somatic	0	0.406004252730195	0.39850955554151
14	89284416	89364288	2	neutral	AA	5.53485	somatic	0	0.942024367870295	0.93289619189389
14	99927360	99929856	6	gain	AAAABB	15.953	germline	1	0.0832693940889647	0.270045369911749
14	101712000	101726976	1	loss	A	-1	germline	1	0.000475912255091166	0.00265048281787339
14	103441728	103456704	2	neutral	AA	54.5718	somatic	0	0.919500338327445	0.76409021517967
15	17025216	17027712	4	gain	-	-1	germline	1	0.0832779306570825	0.270060195890812
15	17080128	17082624	14	gain	-	-1	germline	1	0.0832651260707337	0.270037957145024
15	20339904	20342400	19	gain	AAAAAAAAAAAABBBBBBB	100	germline	1	0.0832651260707337	0.270037957145024
15	20342400	20362368	7	gain	AAAAAAB	5.75255	germline	1	4.59441224498257e-06	1.6635408772725e-06
15	20379840	20382336	5	gain	AAAAB	85.7878	germline	1	0.0832724427819153	0.270050664836066
15	20384832	20419776	7	gain	AAAAAAB	4.52646	germline	1	0.000107535509044036	9.0815120969423e-05
15	20644416	20669376	5	gain	AAABB	6.22033	germline	1	2.03610352329912e-07	3.04778517978832e-08
15	22900800	23477376	2	neutral	AA	7.39217	somatic	0	0.384185467702662	0.471958830830811
15	25174656	25184640	1	loss	A	-1	germline	1	0.00140718088309345	0.001585186784403
15	34434816	34519680	1	loss	A	-1	germline	1	3.41171631354805e-20	0
15	53087424	53109888	2	neutral	AA	54.5873	somatic	0	0.537871697514955	0.858636397058808
15	55039296	55089216	2	neutral	AA	40.9922	somatic	0	0.489440107512038	0.359545786182334
15	56496960	56509440	1	loss	A	-1	germline	1	0.000393666910827397	0.000266650246036115
15	67516800	67536768	2	neutral	AA	83.0744	somatic	0	0.0619271927143878	0.307404711423771
15	69308928	69503616	2	neutral	AA	52.2656	somatic	0	0.580137410861026	0.440569607331414
15	70596864	70611840	2	neutral	AA	100	somatic	0	0.942808932173409	0.966355050759896
15	71415552	71418048	0	loss	-	-1	germline	1	0.0832834188252165	0.270069727191106
15	72091968	72096960	1	loss	A	-1	germline	1	0.0203843806306938	0.0551312990565646
15	76592256	76602240	1	loss	A	-1	germline	1	0.00125997020331971	0.00155273856366556
15	97171776	97189248	2	neutral	AA	100	somatic	0	0.914044402934879	0.786382681559474
15	99031296	99033792	1	loss	A	-1	somatic	0	0.0835661500449907	0.270560390905443
15	100955712	100965696	2	neutral	AA	36.3799	somatic	0	0.856799543226143	0.624113854020523
16	42432	82368	2	neutral	AA	100	somatic	0	0.356945229450073	0.13814386418006
16	846144	848640	4	gain	AABB	6.5441	germline	1	0.0832828090142894	0.27006866814561
16	913536	948480	2	neutral	AA	60.9066	somatic	0	0.00117426843727768	0.0128856205318043
16	1023360	1025856	6	gain	AAAABB	37.4857	germline	1	0.0832693940889647	0.270045369911749
16	21557952	21582912	4	gain	AABB	5.55183	somatic	0	4.32792314672829e-08	4.12915934777658e-09
16	22613760	22698624	4	gain	AAAB	1.98439	germline	1	2.54183193582684e-23	0
16	24675456	25057344	2	neutral	AA	100	germline	1	0.00390306847133929	0.0148609421795989
16	34062912	34065408	24	gain	AAAAAAAAAAAAAAAABBBBBBBB	100	germline	1	0.0832651260707337	0.270037957145024
16	34075392	34082880	2	neutral	AA	36.3786	germline	1	0.0348402014575496	0.183929218869266
16	34082880	34085376	13	gain	AAAAAAABBBBBB	58.2475	germline	1	0.083265735776774	0.270039016102605
16	34085376	34095360	2	neutral	AA	6.38465	germline	1	0.00337310798828343	0.00526941091049871
16	34095360	34100352	7	gain	AAAAABB	2.6826	germline	1	0.0143071289461498	0.0366333704274724
16	34100352	35088768	2	neutral	AA	0.952498	somatic	0	1.04434119549248e-21	2.22044604925031e-16
16	35992320	36089664	2	neutral	AA	3.68821	somatic	0	0.0104467739251301	0.00781907590339936
16	36122112	36127104	4	gain	-	-1	germline	1	0.0143099191024791	0.0366377164992362
16	46478016	46480512	2	neutral	AA	100	somatic	0	0.682673331353952	0.839582563691658
16	46765056	46807488	2	neutral	AA	100	somatic	0	0.174499115087402	0.396310525963207
16	70150080	70162560	3	gain	AAB	3.60477	somatic	0	0.000107777102250303	9.10056450226238e-05
16	76504896	76507392	0	loss	-	-1	germline	1	0.0832681746371013	0.270043251963248
16	79020864	79028352	2	neutral	AA	54.7036	somatic	0	0.450515115900352	0.447334179757862
16	81050112	81139968	2	neutral	AA	100	somatic	0	0.00813065142856708	0.0011609348457704
16	87177792	87222720	2	neutral	AA	15.8669	somatic	0	0.589547469891923	0.603607746163702
16	88500672	88503168	4	gain	AAAB	7.5519	germline	1	0.0832767111039498	0.270058077857426
17	404352	791232	2	neutral	AA	11.3795	somatic	0	0.462933301147175	0.610724889224538
17	3459456	3476928	2	neutral	AA	100	somatic	0	0.572830555208363	0.830884684787106
17	12342720	12365184	2	neutral	AA	27.5354	somatic	0	0.352187338892097	0.412904731308696
17	14751360	14761344	2	neutral	AA	54.568	germline	1	0.322688133738407	0.635410201076204
17	15887040	15889536	1	loss	A	-1	somatic	0	0.0832980553726017	0.27009514519232
17	15974400	16031808	2	neutral	AA	100	somatic	0	0.410656852244302	0.42962661602858
17	21290880	21303360	4	gain	AABB	0.241723	germline	1	0.000107605159908628	9.08600217117694e-05
17	21854976	21857472	5	gain	-	-1	germline	1	0.0832712232938849	0.270048546857245
17	21857472	21884928	3	gain	-	-1	somatic	0	1.70811632059688e-08	7.45939654489547e-09
17	21884928	21967296	1	loss	A	-1	germline	1	1.85394167080823e-13	0
17	21967296	21969792	11	gain	-	-1	germline	1	0.083265735776774	0.270039016102605
17	21977280	21992256	7	gain	-	-1	germline	1	0.000532091862780559	0.000671010161511054
17	22124544	22147008	6	gain	AAAABB	0.273453	germline	1	2.03574116355398e-07	3.04767671099881e-08
17	22149504	22159488	5	gain	AAABB	1.2546	germline	1	0.00270045331970043	0.00495835713045689
17	26782080	26792064	3	gain	-	-1	germline	1	0.000532769682393022	0.000671774766708433
17	26809536	26841984	3	gain	-	-1	germline	1	2.01388983341249e-09	8.27840018757797e-11
17	26841984	26846976	1	loss	A	-1	somatic	0	0.0240667658994109	0.0568294014218368
17	26864448	26866944	7	gain	-	-1	germline	1	0.0832687843612247	0.27004431093598
17	26866944	26869440	4	gain	-	-1	germline	1	0.0832797600139081	0.270063372963626
17	26869440	26876928	3	gain	-	-1	germline	1	0.00359627148686048	0.00829489029171104
17	26876928	26879424	4	gain	-	-1	germline	1	0.0832736622844127	0.270052782827012
17	26936832	26939328	12	gain	AAAAAAAABBBB	2.99779	germline	1	0.083265735776774	0.270039016102605
17	27441024	27523392	2	neutral	AA	100	somatic	0	0.0438360993903852	0.104554962306023
17	39414336	39511680	2	neutral	AA	26.7492	germline	1	6.36552172022617e-09	1.64741194019768e-08
17	40070784	40108224	2	neutral	AA	54.5678	somatic	0	0.572552018004179	0.757049680096822
17	42616704	42756480	2	neutral	AA	100	somatic	0	0.0273445143377745	0.0222248297747403
17	44039424	44071872	2	neutral	AA	27.9992	somatic	0	0.0291518238545621	0.129173717032588
17	44833152	44848128	2	neutral	AA	100	somatic	0	0.0872957406073844	0.24050866513802
17	54981888	55331328	2	neutral	AA	38.6779	germline	1	0.271958446269773	0.133401444909971
17	57403008	57420480	2	neutral	AA	54.5678	somatic	0	0.484702652417794	0.84536284878848
17	59619456	59671872	2	neutral	AA	100	somatic	0	0.378995019690903	0.372468213454644
17	61144512	61204416	2	neutral	AA	44.7894	somatic	0	0.276872256899056	0.414891907009998
17	65410176	65427648	2	neutral	AA	100	somatic	0	0.32719183607105	0.497744522378377
17	72738432	72938112	2	neutral	AA	100	somatic	0	0.028174950542794	0.160259516323167
17	73222656	73237632	2	neutral	AA	36.3786	somatic	0	0.385852017598736	0.452330036118601
17	76786944	76791936	1	loss	A	-1	somatic	0	0.0227283667362189	0.0493076840827295
17	77735424	77752896	2	neutral	AA	100	somatic	0	0.757980754817707	0.966418130365636
17	79367808	79397760	3	gain	AAB	2.15811	germline	1	1.98876216290632e-09	7.70807861982803e-11
17	80743104	80745600	4	gain	AAAB	3.24852	germline	1	0.0832730525313556	0.270051723830023
17	82585152	82587648	6	gain	AAABBB	29.0961	germline	1	0.0832693940889647	0.270045369911749
18	5306496	5308992	1	loss	A	-1	germline	1	0.0833169639967898	0.270127979361538
18	5323968	5326464	1	loss	A	-1	germline	1	0.0832846384579218	0.270071845291183
18	6918912	6923904	2	neutral	AA	100	somatic	0	0.461801899743934	0.781048872275128
18	12085632	12165504	2	neutral	AA	1.48682	somatic	0	0.00616623129153696	0.0104988501918944
18	12707136	12719616	2	neutral	AA	100	somatic	0	0.495993889668535	0.651339274975409
18	22254336	22274304	2	neutral	AA	36.6114	somatic	0	0.520477582537995	0.661461478984198
18	23255232	23414976	2	neutral	AA	40.1311	somatic	0	0.196881185941467	0.119523465631321
18	23999040	24043968	2	neutral	AA	54.5678	somatic	0	0.293893920765227	0.17837143370073
18	25556544	25564032	2	neutral	AA	100	somatic	0	0.963189483380745	0.999911434706938
18	29595072	29597568	1	loss	A	-1	germline	1	0.0847849477189464	0.272669228880156
18	31986240	32011200	2	neutral	AA	100	somatic	0	0.0258698840737392	0.0417766170478335
18	32685120	32819904	2	neutral	AA	25.2524	somatic	0	0.151678427380388	0.344269309361964
18	41283840	41288832	0	loss	-	-1	germline	1	0.0143102077667345	0.0366420630221163
18	44358912	44361408	1	loss	A	-1	somatic	0	0.105300159024496	0.306422327690563
18	48010560	48020544	2	neutral	AA	21.8272	somatic	0	0.993262456317619	0.812642877939389
18	48389952	48587136	2	neutral	AA	54.5838	germline	1	0.00451844914323115	0.00315878862576879
18	51165504	51200448	2	neutral	AA	22.8724	somatic	0	0.76597896647171	0.899217191028968
18	51450048	51452544	1	loss	A	-1	somatic	0	0.0963136125297765	0.29200916858561
18	53267136	53352000	2	neutral	AA	23.6429	somatic	0	0.186189247476756	0.277870953781163
18	53426880	53429376	1	loss	A	-1	somatic	0	0.0867435284310548	0.276027529975339
18	57023616	57026112	3	gain	AAB	8.26727	germline	1	0.0832950059200791	0.270089849631402
18	57278208	57283200	1	loss	A	-1	germline	1	0.0211522064537359	0.0569860571883204
18	63722880	63757824	2	neutral	AA	25.0398	somatic	0	0.348400297125286	0.257903715883058
18	65752128	65924352	2	neutral	AA	86.6088	somatic	0	0.0961869342313936	0.0436891514825627
18	66428544	66436032	2	neutral	AA	100	somatic	0	0.967940726306948	0.994000537389395
18	72481344	72583680	2	neutral	AA	56.5619	somatic	0	0.963670777686791	0.224898128767248
18	76167936	76182912	2	neutral	AA	54.6578	somatic	0	0.60660011615502	0.94320015319008
18	76966656	76969152	3	gain	AAA	8.66151	somatic	0	0.0832876876029834	0.270077140594418
18	79200576	79203072	4	gain	AAAA	100	germline	1	0.0832797600139081	0.270063372963626
18	79520064	79522560	1	loss	A	-1	germline	1	0.0834781332001532	0.270407717435756
19	5765760	5833152	2	neutral	AA	26.4843	somatic	0	0.017712617999145	0.0110440943019885
19	7448064	7450560	3	gain	AAB	7.71031	germline	1	0.0833023247580622	0.270102559104913
19	7450560	7453056	7	gain	AAAABBB	10.35	germline	1	0.0832687843612247	0.27004431093598
19	7730112	7735104	2	neutral	AA	100	somatic	0	0.048243615339135	0.0912692083762556
19	8885760	8910720	2	neutral	AA	0.917182	germline	1	0.134930446948614	0.2694047494635
19	15672384	15759744	2	neutral	AA	21.5049	germline	1	0.794782740466861	0.501297787159657
19	21295872	21562944	2	neutral	AA	6.97028	somatic	0	0.00167677483960825	0.00997026098996068
19	21562944	21575424	3	gain	AAB	1.52195	germline	1	0.000542464717352735	0.000693091451601902
19	21575424	21592896	2	neutral	AA	0.945535	germline	1	0.240753996557397	0.721647270994841
19	22958208	22960704	0	loss	-	-1	germline	1	0.0832779306570825	0.270060195890817
19	23240256	23257728	2	neutral	AA	54.5678	somatic	0	0.217909422255558	0.353610088191347
19	24276096	24281088	1	loss	A	-1	somatic	0	0.0233774261549697	0.0547930241391421
19	24331008	24405888	4	gain	AABB	0.300482	somatic	0	2.26719174778345e-19	0
19	24415872	24418368	2	neutral	AA	10.1353	germline	1	0.0838061322635811	0.270976320588845
19	24905088	24907584	5	gain	-	-1	germline	1	0.0832718330360917	0.270049605845139
19	27338688	27341184	5	gain	AAABB	2.69223	germline	1	0.0832718330360917	0.270049605845139
19	27341184	27346176	3	gain	AAB	9.75501	germline	1	0.0146734559268852	0.0377233257392993
19	27346176	27378624	6	gain	AAAABB	0.147883	germline	1	1.97475559260986e-09	7.556366643513e-11
19	27378624	27383616	4	gain	AAAB	3.68264	germline	1	0.014310400212425	0.0366382960095548
19	27383616	27398592	6	gain	AAAABB	0.256996	germline	1	2.20986203981726e-05	1.22927989150146e-05
19	27398592	27401088	3	gain	AAB	2.49981	germline	1	0.0833224542485437	0.270137512407942
19	28521792	28699008	2	neutral	AA	4.84185	somatic	0	0.673520052011568	0.772166721928096
19	32512896	32642688	2	neutral	AA	35.5021	somatic	0	0.136625483148778	0.160163032463743
19	36349248	36356736	1	loss	A	-1	germline	1	0.00421608670905162	0.00938928965565244
19	40857024	40862016	1	loss	A	-1	germline	1	0.0201151231404856	0.0481516237633786
19	43789824	43797312	2	neutral	AA	100	somatic	0	0.11564276185606	0.224256740131019
19	44029440	44109312	2	neutral	AA	100	somatic	0	0.505607000641917	0.496891117591196
19	46358208	46368192	2	neutral	AA	100	somatic	0	0.0131598838371757	0.0316814511434674
19	47536320	47543808	1	loss	A	-1	germline	1	0.00442946772591955	0.00838556970175708
19	48801792	48819264	2	neutral	AA	36.3786	somatic	0	0.00182731957701722	0.00311919190969867
19	50903424	50905920	1	loss	A	-1	germline	1	0.0833169639967898	0.270127979361538
19	53015040	53047488	3	gain	AAB	2.64226	germline	1	1.98843533215006e-09	7.65051355600121e-11
19	56097600	56142528	2	neutral	AA	15.5711	somatic	0	0.229297959083784	0.382785026061033
20	59904	67392	7	gain	-	-1	germline	1	0.0143072251504476	0.0366330807053935
20	7418112	7423104	1	loss	A	-1	somatic	0	0.0204570054939198	0.0486507954809381
20	21305856	21308352	0	loss	-	-1	germline	1	0.083265735776774	0.27003901610261
20	28773888	28776384	5	gain	-	-1	germline	1	0.0832718330360917	0.270049605845139
20	28781376	28788864	7	gain	-	-1	germline	1	0.00270010275113899	0.00495800420958403
20	28803840	28823808	8	gain	-	-1	germline	1	4.5937864194216e-06	1.6634027379947e-06
20	28836288	28838784	3	gain	-	-1	germline	1	0.0834024010945996	0.270276298994353
20	28871232	28873728	6	gain	-	-1	germline	1	0.0832693940889647	0.270045369911749
20	29263104	29265600	7	gain	-	-1	germline	1	0.0832681746371013	0.270043251963242
20	29265600	29320512	3	gain	-	-1	germline	1	5.13457002937278e-11	9.35584942851619e-13
20	29877120	29879616	8	gain	-	-1	germline	1	0.0832675649165946	0.270042192993536
20	29889600	29894592	4	gain	-	-1	germline	1	0.0143086682833937	0.0366356882762767
20	30149184	30154176	3	gain	-	-1	somatic	0	0.0143231548261823	0.0366716313442275
20	31072704	31075200	31	gain	-	-1	germline	1	0.0832651260707337	0.270037957145024
20	31165056	31167552	4	gain	-	-1	germline	1	0.0832773208787077	0.270059136872603
20	31182528	31185024	5	gain	-	-1	germline	1	0.0832718330360917	0.270049605845139
20	31185024	31187520	30	gain	-	-1	germline	1	0.0832651260707337	0.270037957145024
20	31187520	31239936	3	gain	-	-1	germline	1	1.49082301678371e-06	1.78148603358075e-06
20	31239936	31242432	49	gain	-	-1	germline	1	0.0832651260707337	0.270037957145024
20	34654464	34656960	0	loss	-	-1	germline	1	0.0832724427819153	0.270050664836071
20	37395072	37437504	2	neutral	AA	19.9646	somatic	0	0.660406644879217	0.182653168773136
20	38450880	38465856	2	neutral	AA	100	somatic	0	0.779801004760627	0.972254583065447
20	38520768	38528256	2	neutral	AA	100	somatic	0	0.128574426270645	0.115597221455406
20	38533248	38543232	2	neutral	AA	100	somatic	0	0.732763639515269	0.595420796948984
20	38847744	38857728	2	neutral	AA	43.2592	somatic	0	0.940064098023674	0.740807942849663
20	40203072	40205568	2	neutral	AA	100	somatic	0	0.603590234913296	0.792211162964809
20	41653248	41708160	2	neutral	AA	36.5345	somatic	0	0.481653745432704	0.476923179540077
20	43090944	43095936	2	neutral	AA	17.1465	somatic	0	0.566912063852283	0.581776600258369
20	43575168	43595136	2	neutral	AA	100	somatic	0	0.032843383339804	0.0196800896519479
20	43642560	43647552	1	loss	A	-1	germline	1	0.0203223192016019	0.0552255596848596
20	43647552	43697472	2	neutral	AA	36.9177	somatic	0	0.000364748791998038	0.000184918360691788
20	43852224	43854720	0	loss	-	-1	germline	1	0.0832669551997044	0.270041134026866
20	43854720	43867200	2	neutral	AA	100	somatic	0	0.558988436389672	0.846998480674887
20	44675904	44680896	1	loss	A	-1	germline	1	0.0196887411870317	0.0532288464359288
20	45267456	45282432	2	neutral	AA	27.3143	somatic	0	0.350331172520572	0.591689111229727
20	48746880	48749376	2	neutral	AA	100	somatic	0	0.74045370110223	0.870022628909098
20	49478208	49480704	2	neutral	AA	100	somatic	0	0.469740781255074	0.696822443543456
20	50274432	50276928	2	neutral	AA	100	somatic	0	0.644367811077704	0.81745482785118
20	51400128	51405120	2	neutral	AA	63.5824	somatic	0	0.32064130822349	0.759839680729009
20	51981696	51989184	2	neutral	AA	54.5679	somatic	0	0.0668747644977367	0.203577564908985
20	52990080	53022528	2	neutral	AA	100	somatic	0	0.313788144793853	0.375553196962896
20	53644032	53646528	2	neutral	AA	100	somatic	0	0.519118070520896	0.734247926927807
20	53836224	53871168	2	neutral	AA	40.0147	somatic	0	0.0545947284916811	0.146240341092988
20	53871168	53881152	2	neutral	AA	36.3874	somatic	0	0.978743102377132	0.974827320713995
20	54647424	54649920	2	neutral	AA	100	somatic	0	0.78850766278682	0.892688008496742
20	54824640	54879552	2	neutral	AA	30.1012	somatic	0	0.506417654792505	0.448698282526036
20	55226496	55231488	2	neutral	AA	54.5792	somatic	0	0.104445052799726	0.240818430822008
20	56621760	56651712	2	neutral	AA	54.5678	somatic	0	0.611157964777727	0.484061786589288
20	58528704	58538688	2	neutral	AA	54.8886	somatic	0	0.507396961076589	0.486347003280254
20	58588608	58591104	2	neutral	AA	100	somatic	0	0.913286467829007	0.940227108024874
20	59554560	59569536	2	neutral	AA	43.2597	somatic	0	0.179979667838461	0.415509706005003
20	59664384	59666880	2	neutral	AA	100	somatic	0	0.0986468103452601	0.295804501901718
20	61199424	61214400	2	neutral	AA	51.8804	somatic	0	0.257886094415715	0.411303815202564
20	61835904	61863360	2	neutral	AA	27.3132	germline	1	0.0747247822481951	0.264920987994562
20	62105472	62110464	2	neutral	AA	13.6428	germline	1	0.46149613279687	0.376808322875912
20	62442432	62447424	2	neutral	AA	59.881	somatic	0	0.107022316798464	0.25246086149697
20	62776896	62779392	2	neutral	AA	100	somatic	0	0.253898597585625	0.497215867227762
20	63026496	63051456	2	neutral	AA	15.8163	somatic	0	0.0252462100793195	0.0880970661228945
20	63221184	63236160	2	neutral	AA	63.4286	somatic	0	0.455351741304347	0.79741941629909
20	63485760	63493248	2	neutral	AA	12.0406	somatic	0	0.935695743523342	0.94068233189949
21	0	8990592	6	gain	AAAABB	-1	germline	1	2.20977941189643e-05	1.2292507254541e-05
21	8990592	8995584	9	gain	AAAAABBBB	6.10024	germline	1	0.0143065517323465	0.03663250126725
21	8995584	9736896	6	gain	AAAABB	-1	germline	1	NA	NA
21	9736896	9739392	5	gain	AAABB	2.74736	germline	1	0.0832724427819153	0.270050664836066
21	9739392	9759360	6	gain	AAAABB	-1	germline	1	NA	NA
21	9759360	9764352	5	gain	AAAAB	12.7386	germline	1	0.0143082834353866	0.0366348190679388
21	9764352	10271040	6	gain	AAAABB	-1	germline	1	NA	NA
21	10271040	10273536	43	gain	-	-1	germline	1	0.0832651260707337	0.270037957145024
21	10273536	10650432	6	gain	AAAABB	-1	germline	1	NA	NA
21	10650432	10690368	5	gain	AAAAB	1.84118	somatic	0	1.97265545694804e-11	1.87405646556726e-13
21	10690368	10692864	41	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBB	100	germline	1	0.0832651260707337	0.270037957145024
21	10692864	10765248	6	gain	AAAABB	1.31619	somatic	0	9.50012718439174e-15	0
21	13935168	13937664	2	neutral	AA	100	germline	1	0.56984211728823	0.769960962033791
21	18792384	18797376	2	neutral	AA	54.5678	somatic	0	0.643217885217947	0.820873639584166
21	19546176	19553664	2	neutral	AA	100	somatic	0	0.76580862648569	0.694082809395089
21	23814336	23826816	2	neutral	AA	100	somatic	0	0.0633940298471594	0.163522949806508
21	28312128	28367040	2	neutral	AA	62.2373	somatic	0	0.203190478546368	0.472672992795594
21	36301824	36499008	2	neutral	AA	43.0062	somatic	0	0.00428702358002522	0.00802433502859656
21	37095552	37215360	2	neutral	AA	100	somatic	0	0.355095566239008	0.284548938343166
21	42144960	42184896	2	neutral	AA	54.5678	somatic	0	0.409670191582276	0.601871089913538
21	42554304	42741504	2	neutral	AA	5.43873	somatic	0	0.923439526929681	0.513544472510262
22	11626368	11628864	4	gain	AABB	16.8493	germline	1	0.0832767111039498	0.270058077857426
22	12692160	12694656	12	gain	AAAAAAAAABBB	100	germline	1	0.083265735776774	0.270039016102605
22	17192448	17227392	2	neutral	AA	54.5678	somatic	0	0.00105080121086647	0.00327415354603566
22	17876352	17878848	4	gain	AAAA	4.65061	germline	1	0.0832846384579218	0.270071845291178
22	21872448	21877440	2	neutral	AA	54.5678	somatic	0	0.656918397888128	0.68219930138909
22	21972288	21999744	2	neutral	AA	100	somatic	0	0.0965171183261112	0.099923057813554
22	31162560	31237440	2	neutral	AA	43.6095	germline	1	0.0633652993264642	0.0782994096817533
22	33506304	33516288	2	neutral	AA	100	germline	1	0.13888055745395	0.28769115314553
22	34467264	34469760	1	loss	A	-1	germline	1	0.0837754912748178	0.270923242403836
22	36641280	36663744	2	neutral	AA	54.5678	somatic	0	0.728987912139533	0.386110289210186
22	36746112	36748608	1	loss	A	-1	germline	1	0.0833316053193638	0.270153401364307
22	38168832	38246208	2	neutral	AA	100	somatic	0	0.190213672317148	0.203666587313976
22	40200576	40208064	2	neutral	AA	54.5678	somatic	0	0.996332878306018	0.970671567574717
22	43430400	43500288	2	neutral	AA	48.2945	somatic	0	0.931757255933304	0.562405149655368
22	45586944	45891456	2	neutral	AA	8.58769	somatic	0	0.292322601744279	0.210333423809507
22	46612800	46650240	2	neutral	AA	5.45924	germline	1	0.0963724431036763	0.207436327768546
22	47825856	47880768	2	neutral	AA	58.4561	somatic	0	0.88447639176776	0.279232847211917
22	48604608	48642048	2	neutral	AA	9.94403	germline	1	0.203736420112275	0.136831847018067
22	50641344	50646336	4	gain	AAAA	14.2129	germline	1	0.0143111700180173	0.0366406141310291
X	3524352	3526848	2	gain	-	-1	somatic	0	0.20996592751196	0.447434557939845
X	62512320	62514816	2	gain	AA	10.5051	somatic	0	0.387125885195957	0.627759360526396
X	78267072	78272064	2	gain	AB	11.976	somatic	0	0.10340670786105	0.227666871654093
X	115305216	115310208	0	loss	-	-1	germline	1	0.0143651472663574	0.0368093111494375
X	125271744	125281728	0	loss	-	-1	germline	1	0.0143080910148072	0.0366359780164005
X	126776832	126779328	0	loss	-	-1	germline	1	0.0832651260707337	0.270037957145029
X	129365184	129370176	0	loss	-	-1	somatic	0	0.0143115549345117	0.0366432221710772
X	145339584	145344576	0	loss	-	-1	somatic	0	0.0143133834125774	0.0366516269605619
Y	10655424	10657920	7	gain	-	-1	germline	1	0.0832687843612247	0.27004431093598
Y	10752768	10762752	4	gain	-	-1	germline	1	0.000532342562326884	0.000671275556916928
Y	10762752	10765248	6	gain	-	-1	germline	1	0.0832693940889647	0.270045369911749
Y	10765248	10775232	3	gain	-	-1	germline	1	0.57540249553368	0.270162405221692
Y	10775232	10777728	5	gain	-	-1	germline	1	0.0832718330360917	0.270049605845139
Y	10777728	10795200	2	gain	-	-1	germline	1	0.057496220111807	0.0145635215736762
Y	10795200	10802688	4	gain	-	-1	germline	1	0.00270150527494663	0.00496135788776508
Y	10802688	10922496	2	gain	-	-1	somatic	0	0.000259336864217646	1.02890056741245e-06
Y	10924992	10927488	5	gain	-	-1	germline	1	0.0832718330360917	0.270049605845139
Y	10927488	10954944	2	gain	-	-1	germline	1	0.871253390932165	0.774679489264022
Y	10957440	10959936	5	gain	-	-1	germline	1	0.0832724427819153	0.270050664836066
Y	10962432	10984896	2	gain	-	-1	germline	1	0.687024911056098	0.592832407041001
Y	10984896	10989888	9	gain	-	-1	germline	1	0.014307321355316	0.0366348190679388
Y	10989888	10997376	2	gain	-	-1	germline	1	0.970648248874105	0.976289275237609
Y	10997376	11002368	4	gain	-	-1	germline	1	0.0143102077667345	0.0366406141310291
Y	11004864	11039808	2	gain	AA	24.0307	germline	1	0.0432603868153544	0.000645334989140989
Y	11291904	11306880	32	gain	AAAAAAAAAAAAAAAAAAAAABBBBBBBBBBB	29.357	germline	1	2.20920109878269e-05	1.22892994279811e-05
Y	11306880	11334336	7	gain	AAAAABB	1.0909	germline	1	0.000107530777034199	9.0815120969423e-05
Y	11529024	11534016	13	gain	AAAAAAAAAAABB	29.0897	germline	1	0.0143071289461498	0.0366345293358358
Y	11686272	11688768	3	gain	AAA	56.1582	germline	1	0.0833047644864803	0.27010679569309
Y	11688768	11691264	6	gain	AAAABB	21.9621	germline	1	0.0832693940889647	0.270045369911749
Y	11716224	11718720	4	gain	AAAA	5.19145	germline	1	0.083281589403286	0.270066550063722
Y	11721216	11723712	41	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBB	100	germline	1	0.0832651260707337	0.270037957145024
Y	11723712	11746176	2	gain	AA	6.5859	germline	1	0.0352273064167627	0.0229636772640379
Y	11746176	11748672	9	gain	AAAAAABBB	2.60252	germline	1	0.083265735776774	0.270039016102605
Y	26637312	26639808	5	gain	AAABB	11.9803	germline	1	0.0832718330360917	0.270049605845139
Y	56826432	56851392	12	gain	AAAAAAAABBBB	0.931626	somatic	0	9.63555853935525e-07	2.25148685251142e-07
