chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	5670132	5673096	4	gain	-	-1	germline	1	0.0832746790350586	0.270054447726005
1	16613220	16619148	8	gain	-	-1	germline	1	0.0143081690121055	0.0366345018949881
1	16903692	16939260	3	gain	-	-1	germline	1	9.66084919122887e-07	2.25791999763914e-07
1	31430256	31433220	5	gain	-	-1	germline	1	0.0832746790350586	0.270054447726005
1	55660956	55666884	1	loss	A	-1	somatic	0	0.0206289653542138	0.0561993678102908
1	61648236	61654164	1	loss	A	-1	somatic	0	0.0213577615977821	0.0540176312499372
1	72288996	72345312	1	loss	A	-1	germline	1	1.44716361004775e-12	1.16240350678254e-13
1	109644288	109650216	1	loss	A	-1	germline	1	0.0156453033837648	0.0406907094518851
1	125068944	125074872	3	gain	-	-1	somatic	0	0.0143171056701145	0.0366589993023401
1	125080800	125083764	5	gain	-	-1	germline	1	0.0832732271694046	0.270051926186418
1	125083764	125163792	3	gain	-	-1	germline	1	0.00101676966943173	0.000481662066355693
1	125163792	125166756	5	gain	-	-1	germline	1	0.0832739530996684	0.270053186954063
1	150666048	150713472	2	neutral	AA	54.5679	germline	1	0.658233236237895	0.944810227453659
1	151910928	152020596	2	neutral	AA	45.5101	somatic	0	0.128050932833111	0.43678589511134
1	152583756	152613396	1	loss	A	-1	germline	1	3.7361738489218e-07	2.96825285461821e-08
1	154587420	154700052	2	neutral	AA	100	somatic	0	0.0260023184286253	0.0806576262905739
1	156700752	156760032	2	neutral	AA	36.3786	germline	1	0.99468522830243	0.619262712643068
1	157625520	157667016	2	neutral	AA	100	somatic	0	0.168090781057429	0.124165667725464
1	160974840	160992624	2	neutral	AA	59.0976	somatic	0	0.713523280293782	0.968448854989251
1	164333052	164350836	2	neutral	AA	100	germline	1	0.470644908970041	0.354277815403491
1	165079980	165180756	2	neutral	AA	27.284	somatic	0	0.0166395469483817	0.0431949700582583
1	168346308	168441156	2	neutral	AA	18.1894	somatic	0	0.352394500060514	0.387940350060212
1	169259220	169271076	1	loss	A	-1	germline	1	0.00124711591486283	0.00156670913353207
1	174226884	174241704	2	neutral	AA	54.5678	somatic	0	0.6179165032908	0.283092051808033
1	174840432	175030128	2	neutral	AA	40.9755	somatic	0	0.085730077810369	0.136587331454823
1	182401596	182413452	2	neutral	AA	100	somatic	0	0.733346704776842	0.943541236194826
1	182499408	182514228	2	neutral	AA	100	somatic	0	0.662351676689237	0.838221250892594
1	184935816	184956564	2	neutral	AA	100	somatic	0	0.649102467331039	0.824742260323243
1	186059172	186127344	2	neutral	AA	100	somatic	0	0.000764927700992559	0.00031008061893345
1	192600720	192621468	2	neutral	AA	51.3173	somatic	0	0.0742443981196002	0.307300711815547
1	195822588	195846300	2	neutral	AA	36.3818	germline	1	0.0718094345133513	0.134476550638868
1	196771068	196827384	1	loss	A	-1	germline	1	0.000185777236126465	0.000169957679792554
1	204679020	204705696	2	neutral	AA	100	somatic	0	0.286304995252786	0.19140349474937
1	212124588	212130516	2	neutral	AA	100	somatic	0	0.359156499972729	0.798202160297824
1	212824092	212832984	2	neutral	AA	100	somatic	0	0.185333480956621	0.307128125551349
1	212880408	212889300	2	neutral	AA	100	somatic	0	0.30335162495807	0.655726441929609
1	214649916	214658808	2	neutral	AA	100	somatic	0	0.67802726123284	0.967111003577362
1	216226764	216250476	2	neutral	AA	36.7105	somatic	0	0.10075355371023	0.297688431980955
1	224205852	224211780	2	neutral	AA	100	somatic	0	0.862325496852729	0.846090570794411
1	234775476	234781404	5	gain	AAABB	2.89456	germline	1	0.0143088562725961	0.03663588164978
1	236094456	236097420	9	gain	AAAAABBBB	18.7076	germline	1	0.0832717753242555	0.270049404664018
1	236859168	237028116	2	neutral	AA	16.2122	somatic	0	0.256139008956355	0.0880283877410452
1	237214848	237238560	2	neutral	AA	54.5678	germline	1	0.222283973334263	0.117302832299266
1	248839656	248875224	2	neutral	AA	36.7139	somatic	0	0.00352233128815268	0.000919848012195135
2	865488	969228	2	neutral	AA	18.4017	somatic	0	0.0979428999630742	0.228270110397994
2	3180372	3183336	4	gain	AAAA	3.04027	germline	1	0.0832746790350586	0.270054447726005
2	5933928	5966532	2	neutral	AA	100	somatic	0	0.481597177372273	0.632658050270297
2	9431448	9467016	2	neutral	AA	100	somatic	0	0.215897854028579	0.147945004773776
2	15620280	15652884	2	neutral	AA	36.3786	somatic	0	0.790905404692604	0.882923825408924
2	24375936	24387792	1	loss	A	-1	somatic	0	0.000968309730167519	0.00155232082348145
2	25140648	25235496	2	neutral	AA	87.9993	somatic	0	0.672876828367845	0.817719971808219
2	26092092	26198796	2	neutral	AA	11.1691	somatic	0	0.0836624458965685	0.20449946697436
2	26993148	27013896	2	neutral	AA	100	somatic	0	0.303353670893478	0.666879349822577
2	34471320	34503924	1	loss	A	-1	germline	1	1.19438081859765e-07	2.22629887858261e-08
2	38727624	38745408	3	gain	AAB	3.76974	somatic	0	2.21944756650303e-05	1.23685103063931e-05
2	38745408	38780976	2	neutral	AA	100	somatic	0	0.771708864895573	0.687662230542362
2	38807652	38855076	2	neutral	AA	100	somatic	0	0.551388554199127	0.882935471165572
2	71319768	71370156	2	neutral	AA	100	somatic	0	0.524423258391743	0.461705528420544
2	73596120	73711716	2	neutral	AA	5.7668	somatic	0	0.00032820395877969	0.00580595836656139
2	76616436	76628292	2	neutral	AA	54.568	somatic	0	0.551329898016251	0.947629287150128
2	83682612	83718180	2	neutral	AA	100	somatic	0	0.960701113757487	0.221376936645567
2	86634756	86768136	2	neutral	AA	100	somatic	0	0.0214794246075044	0.0134533704238476
2	89773632	89785488	5	gain	-	-1	germline	1	0.000532221242265997	0.000671114799724037
2	89788452	89794380	3	gain	AAB	47.3774	germline	1	0.0223013720559626	0.0615231350854157
2	89794380	89824020	4	gain	AAAB	100	somatic	0	2.03672614813629e-07	3.0489011870749e-08
2	89824020	89841804	22	gain	AAAAAAAAAAAAAAABBBBBBB	20.1352	germline	1	2.20962337510111e-05	1.22925907677374e-05
2	89841804	89850696	4	gain	AAAB	100	germline	1	0.00270068292349743	0.00495851963864991
2	91409760	91415688	4	gain	-	-1	germline	1	0.0143097726652143	0.0366379513672178
2	96401136	96415956	2	neutral	AA	100	somatic	0	0.545908194330669	0.491372922990186
2	108870684	108876612	2	neutral	AA	100	somatic	0	0.576605470923011	0.897178594457054
2	108882540	108888468	2	neutral	AA	100	somatic	0	0.965847643423056	0.803686291226122
2	109196724	109199688	12	gain	AAAAAAAABBBB	4.67585	germline	1	0.0832688716954717	0.270044361670776
2	109380492	109404204	2	neutral	AA	100	somatic	0	0.20864234661748	0.458414208657825
2	112288176	112291140	4	gain	AABB	1.20648	somatic	0	0.0832746790350586	0.270054447726005
2	112486764	112554936	2	neutral	AA	36.3786	somatic	0	0.0423995842414502	0.113007523736257
2	120376932	120394716	2	neutral	AA	29.2414	somatic	0	0.133701155040723	0.107031363352354
2	121642560	121657380	2	neutral	AA	36.3786	somatic	0	0.270183163482717	0.398650291268949
2	124428720	124559136	2	neutral	AA	54.4611	somatic	0	0.00793138873475301	0.00441125185230484
2	125685456	125694348	1	loss	A	-1	somatic	0	0.004728403718796	0.00804156489658403
2	129728352	129734280	2	neutral	AA	54.5693	somatic	0	0.417684079543075	0.601567507387259
2	140813712	140834460	2	neutral	AA	100	somatic	0	0.0830431966717057	0.0446282515109159
2	143042640	143048568	2	neutral	AA	100	somatic	0	0.464391476469872	0.803557112127166
2	143143416	143178984	2	neutral	AA	22.3902	somatic	0	0.000994079112644333	0.00662167095900368
2	144056328	144071148	2	neutral	AA	58.0998	somatic	0	0.250711750110615	0.368505418816374
2	146104452	146119272	1	loss	A	-1	somatic	0	0.000286737957145812	0.000262103532418401
2	147067752	147138888	2	neutral	AA	100	somatic	0	0.865939138135467	0.431927777271827
2	147553848	147604236	2	neutral	AA	19.6611	somatic	0	0.367280554513677	0.151199855918487
2	150328152	150384468	2	neutral	AA	54.5679	somatic	0	0.883879182281438	0.772383072460139
2	151238100	151291452	2	neutral	AA	54.5678	somatic	0	0.0938461498693155	0.336898880074636
2	151730124	151910928	2	neutral	AA	33.2818	somatic	0	6.6334987835479e-06	8.34740039820092e-05
2	157664052	157690728	2	neutral	AA	54.5685	somatic	0	0.111630085155721	0.230729959166753
2	165349704	165373416	2	neutral	AA	100	somatic	0	0.00672320468958971	0.00398887410346405
2	173690400	173720040	2	neutral	AA	36.3858	somatic	0	0.50590336322013	0.695388216135489
2	176194980	176239440	2	neutral	AA	100	somatic	0	0.799191065991922	0.876181439098549
2	181177464	181195248	2	neutral	AA	100	somatic	0	0.769473273789802	0.818984199711595
2	189230652	189239544	1	loss	A	-1	somatic	0	0.00563115815493857	0.00950475020535535
2	194811864	194847432	2	neutral	AA	54.5678	somatic	0	0.0177123667969135	0.0159706383285522
2	200330832	200419752	2	neutral	AA	71.5532	somatic	0	0.00976976215554501	0.0217849336805036
2	208647816	208653744	2	neutral	AA	100	somatic	0	0.8543688977818	0.821282206945747
2	211973424	211979352	2	neutral	AA	100	somatic	0	0.495843553762044	0.910952994082052
2	214202352	214350552	2	neutral	AA	58.3361	somatic	0	0.00209779662416895	0.00179457666967175
2	217803612	217812504	2	neutral	AA	100	germline	1	0.392263721483366	0.754515271571752
2	218467548	218520900	2	neutral	AA	54.5678	somatic	0	0.128482528383072	0.298398700261267
2	219187800	219193728	1	loss	A	-1	somatic	0	0.0210676309863983	0.0575930413965654
3	186732	192660	1	loss	A	-1	somatic	0	0.0228364275124145	0.0539809138406464
3	5163288	5198856	2	neutral	AA	36.3787	somatic	0	0.291441057421406	0.469910304652532
3	18296772	18370872	2	neutral	AA	54.5678	somatic	0	0.0481618343011431	0.150478904628526
3	25321452	25354056	2	neutral	AA	100	somatic	0	0.304468014086613	0.437421167859407
3	32058624	32067516	1	loss	A	-1	germline	1	0.0199309862041624	0.0536523843911615
3	32295744	32301672	2	neutral	AA	37.196	somatic	0	0.153925816165716	0.378034687050122
3	42302208	42331848	2	neutral	AA	100	germline	1	0.000613787378634789	0.00261604376808933
3	45592248	45615960	2	neutral	AA	54.5678	somatic	0	0.171967462738653	0.188664242838259
3	48345804	48363588	2	neutral	AA	100	somatic	0	0.101288572378372	0.282493928082747
3	49587720	49614396	2	neutral	AA	81.5741	somatic	0	0.580265600325375	0.778187007435149
3	51736620	51784044	2	neutral	AA	100	somatic	0	0.00172722447966698	0.00523303470249037
3	55245996	55260816	2	neutral	AA	100	somatic	0	0.631206513760113	0.693783816925147
3	67727400	67760004	2	neutral	AA	36.3968	somatic	0	0.743854458658766	0.56176677742462
3	68669952	68687736	2	neutral	AA	100	somatic	0	0.255068490263234	0.158522544642279
3	68696628	68699592	1	loss	A	-1	germline	1	0.0832826646626914	0.27006831650094
3	76237044	76337820	2	neutral	AA	62.2547	somatic	0	0.00129668434351911	0.000800093512473898
3	78655668	78706056	2	neutral	AA	78.4741	somatic	0	0.00429965432649162	0.00517544580688478
3	79784952	79850160	2	neutral	AA	54.5721	somatic	0	0.00133331549023337	0.0058994155219918
3	80013180	80016144	0	loss	-	-1	germline	1	0.0832725012442669	0.270050665423075
3	80016144	80057640	2	neutral	AA	100	somatic	0	0.309754296280343	0.643930596760546
3	88042656	88223460	2	neutral	AA	100	somatic	0	0.0218914824888785	0.00322829532493596
3	90327900	90446460	2	neutral	AA	2.86282	somatic	0	0.034999270482788	0.121614487931773
3	96501912	96667896	2	neutral	AA	54.64	somatic	0	0.000325218956793883	0.000109699693360943
3	98686380	98698236	1	loss	A	-1	germline	1	0.001748342147183	0.00196710117805954
3	99145800	99178404	2	neutral	AA	84.9555	somatic	0	0.71922970055523	0.895596706094315
3	99178404	99184332	1	loss	A	-1	germline	1	0.0205984346286625	0.0560959463182997
3	99184332	99202116	2	neutral	AA	61.404	somatic	0	0.888425011291884	0.949223189432559
3	99225828	99231756	1	loss	A	-1	somatic	0	0.0244619493878697	0.0564433298664314
3	105885936	105903720	2	neutral	AA	100	somatic	0	0.584248475749265	0.632982994519352
3	108574284	108725448	2	neutral	AA	45.3268	somatic	0	0.000144211295060163	0.000582558353836138
3	109822128	109902156	2	neutral	AA	100	somatic	0	0.402921757640204	0.345824911188894
3	113571588	113592336	2	neutral	AA	54.5913	somatic	0	0.747827238385679	0.973599541828128
3	118150968	118159860	2	neutral	AA	100	somatic	0	0.755949867654573	0.752075702353866
3	128676132	128693916	3	gain	AAB	19.5894	germline	1	0.00901179324007706	0.00998808816612828
3	130232232	130250016	1	loss	A	-1	germline	1	0.145311586023474	0.0962015173828593
3	131794260	131895036	2	neutral	AA	100	somatic	0	0.000347906737736764	0.00409648159052534
3	136800456	136815276	2	neutral	AA	36.3789	somatic	0	0.989960482687394	0.749588728965539
3	138294312	138303204	2	neutral	AA	100	somatic	0	0.0314724871220795	0.141949067731076
3	141240528	141249420	2	neutral	AA	100	somatic	0	0.82391277261789	0.897047820033452
3	146110380	146128164	2	neutral	AA	100	somatic	0	0.392102552908753	0.290821818900301
3	155236536	155248392	2	neutral	AA	100	somatic	0	0.710300551487802	0.681797346914371
3	158330952	158363556	2	neutral	AA	54.6373	somatic	0	0.67980155932567	0.721621739040871
3	162776952	162922188	2	neutral	AA	100	somatic	0	0.337051275377982	0.375397444424153
3	166173696	166241868	2	neutral	AA	36.3786	somatic	0	0.609812499302134	0.439965054879046
3	170370720	170409252	2	neutral	AA	28.6913	somatic	0	0.203716986450861	0.274337902111001
3	171651168	171701556	2	neutral	AA	100	somatic	0	0.00505320626416124	0.00982196783534417
3	183015144	183101100	2	neutral	AA	23.803	somatic	0	0.000132276933571594	0.00502885292303878
3	183296724	183314508	2	neutral	AA	80.2741	somatic	0	0.121385958828366	0.0525954809727769
3	186483024	186491916	2	neutral	AA	36.5168	somatic	0	0.0416813702361917	0.0614225032268044
3	195567684	195603252	2	neutral	AA	54.5678	somatic	0	0.430050248914114	0.629515044511185
4	130416	133380	0	loss	-	-1	germline	1	0.0832659681487057	0.270039318746284
4	40292616	40295580	4	gain	-	-1	germline	1	0.0832746790350586	0.270054447726005
4	58301880	58316700	1	loss	A	-1	germline	1	0.000953689339355922	0.00152646974026471
4	63829740	63850488	1	loss	A	-1	germline	1	4.50142621002878e-05	2.84957272975728e-05
4	68518788	68622528	1	loss	A	-1	germline	1	7.91985302398116e-16	0
4	70620264	70623228	0	loss	-	-1	germline	1	0.0832674199118366	0.27004184019994
4	99762312	99774168	3	gain	-	-1	germline	1	0.0143128658725294	0.0366445061473732
4	114253308	114262200	1	loss	A	-1	germline	1	0.00542595017534789	0.00945606415006384
4	132259608	132262572	0	loss	-	-1	germline	1	0.0832761309212178	0.270056969282783
4	165079980	165085908	1	loss	A	-1	germline	1	0.0203952762498481	0.0553434977482801
4	171452580	171458508	1	loss	A	-1	somatic	0	0.0184873222849615	0.0460670717476371
4	172504800	172513692	1	loss	A	-1	germline	1	0.00584889594586918	0.0101667586636898
5	2142972	2145936	3	gain	AAB	6.74584	germline	1	0.0832783087889044	0.270060751650161
5	6002100	6016920	2	neutral	AA	44.1244	somatic	0	0.329661900612444	0.55272889336336
5	10937160	10946052	2	neutral	AA	100	somatic	0	0.0327449446190341	0.092640741003204
5	12810408	12822264	1	loss	A	-1	germline	1	0.00176933774057488	0.00175253845042189
5	20324148	20359716	2	neutral	AA	54.6877	somatic	0	0.173596357548235	0.152759340340162
5	23611224	23640864	2	neutral	AA	100	somatic	0	0.000832153673265816	0.000549817500334893
5	24165492	24230700	2	neutral	AA	55.2745	somatic	0	6.07110566001289e-05	0.000137896465229548
5	24417432	24426324	2	neutral	AA	54.5679	somatic	0	0.0463283183541023	0.107598391075583
5	46271004	46276932	1	loss	A	-1	somatic	0	0.0234622122358633	0.0565020763238877
5	46407348	46413276	1	loss	A	-1	germline	1	0.0205621174142976	0.0559877043664504
5	49599576	49602540	220	gain	-	-1	germline	1	0.0832652422748292	0.270038058025896
5	52910364	52913328	1	loss	A	-1	somatic	0	0.0833676410961687	0.270215862007991
5	58026228	58038084	1	loss	A	-1	germline	1	0.00163634561299023	0.00155359355961582
5	60705684	60708648	1	loss	A	-1	somatic	0	0.0833240546691543	0.270140190297921
5	62306244	62315136	1	loss	A	-1	germline	1	0.00580616395362306	0.00944295143598139
5	68963388	71625060	2	neutral	AA	24.309	somatic	0	0.0365595938011536	0.011976219548621
5	82725240	82763772	2	neutral	AA	55.0709	somatic	0	0.2001527008757	0.198275747390681
5	84651840	84660732	1	loss	A	-1	germline	1	0.0197678642370954	0.0534777464003777
5	86418384	86424312	1	loss	A	-1	somatic	0	0.0529916876856241	0.164129739943287
5	91199316	91208208	1	loss	A	-1	somatic	0	0.00833522392447312	0.0138604707649445
5	92020344	92038128	2	neutral	AA	100	somatic	0	0.980638621132757	0.930107038718553
5	97177704	97183632	2	neutral	AA	100	somatic	0	0.656105583329662	0.930008834563303
5	99009456	99012420	0	loss	-	-1	somatic	0	0.0832754049755751	0.270055708502248
5	107563560	107779932	2	neutral	AA	27.0065	somatic	0	0.604660314368093	0.6428121817703
5	114244416	114253308	2	neutral	AA	100	somatic	0	0.159718608043401	0.345747241564625
5	116701572	116754924	2	neutral	AA	46.4271	somatic	0	0.0877103411700799	0.24416611375015
5	118539252	118545180	1	loss	A	-1	germline	1	0.0145566583766099	0.0373434035246868
5	120042000	120050892	1	loss	A	-1	somatic	0	0.0108849239699926	0.0188935122606164
5	123498024	123506916	2	neutral	AA	100	somatic	0	0.589538342154518	0.861443207498479
5	125614320	125617284	0	loss	-	-1	somatic	0	0.0832754049755751	0.270055708502248
5	131782404	131794260	2	neutral	AA	100	somatic	0	0.261105189988977	0.475453237432292
5	135116904	135122832	2	neutral	AA	100	somatic	0	0.727820826282944	0.972217489857273
5	135777876	135786768	1	loss	A	-1	somatic	0	0.00665442417504931	0.00995365384085334
5	137292480	137307300	2	neutral	AA	100	somatic	0	0.0491120322039236	0.0266429852416376
5	137514780	137520708	1	loss	A	-1	somatic	0	0.0332326106220583	0.0973113572981319
5	139468056	139476948	2	neutral	AA	100	somatic	0	0.120623947985525	0.125916593981857
5	145739880	145742844	1	loss	A	-1	somatic	0	0.0833690942950623	0.270218384664734
5	149498232	149679036	2	neutral	AA	9.02914	somatic	0	0.177847876580077	0.0679835709046209
5	158301312	158310204	2	neutral	AA	100	somatic	0	0.179261740147212	0.547678352162846
5	166096632	166167768	2	neutral	AA	100	somatic	0	0.356553942620815	0.320998525275909
5	178583964	178586928	5	gain	AAABB	100	germline	1	0.0832732271694046	0.270051926186418
5	180635052	180658764	2	neutral	AA	67.0715	germline	1	0.0206500260211186	0.0178631268708132
5	180949236	181002588	1	loss	A	-1	germline	1	8.58135784100296e-12	1.75415237890775e-14
5	181044084	181047048	4	gain	AAAA	51.5743	germline	1	0.0832754049755751	0.270055708502243
6	254904	296400	3	gain	AAB	1.98803	germline	1	4.26687954670381e-10	1.04294350933287e-11
6	296400	382356	4	gain	AABB	0.510777	germline	1	2.26594492632331e-19	0
6	4976556	5029908	2	neutral	AA	100	somatic	0	0.897402855632634	0.508796780589327
6	5160324	5305560	2	neutral	AA	16.4085	somatic	0	0.0485522729848722	0.150888495049827
6	7365540	7377396	2	neutral	AA	54.5678	somatic	0	0.337767067212444	0.316571224758162
6	12875616	13050492	2	neutral	AA	100	somatic	0	0.0322123573757031	0.100076316941033
6	18563532	18569460	2	neutral	AA	100	somatic	0	0.085932019551454	0.188217807692518
6	18845112	18859932	2	neutral	AA	40.7557	germline	1	0.355265176807187	0.268600184609517
6	24189204	24221808	2	neutral	AA	100	germline	1	0.879756840982081	0.870532482383215
6	28484040	28507752	2	neutral	AA	100	germline	1	0.563809728023612	0.932715117531492
6	32488404	32571396	1	loss	A	-1	germline	1	3.45953389471035e-10	1.4441781104324e-12
6	32571396	32577324	2	neutral	AA	2.69356	somatic	0	0.498066219844876	0.699910163602429
6	32577324	32666244	1	loss	A	-1	germline	1	1.37128920038355e-06	1.78627398650377e-07
6	35656920	35662848	1	loss	A	-1	germline	1	0.0203917592578266	0.0554145952207561
6	36383100	36789168	2	neutral	AA	44.9645	somatic	0	0.000210829385644419	0.00124878402952722
6	40577160	40583088	2	neutral	AA	54.5873	germline	1	0.367074848454831	0.797964548773816
6	44317728	44356260	2	neutral	AA	55.7912	somatic	0	0.393506492248491	0.140796449271868
6	49460268	49481016	3	gain	-	-1	germline	1	0.000107744761074091	9.09763562306765e-05
6	51597312	51638808	2	neutral	AA	54.6208	somatic	0	0.282374501603687	0.203650754091516
6	51982632	52021164	2	neutral	AA	54.6036	somatic	0	0.110574957766671	0.165950790640073
6	54063360	54069288	1	loss	A	-1	somatic	0	0.0228694801020409	0.0546895586859907
6	55011840	55041480	2	neutral	AA	36.9365	germline	1	0.174918446895213	0.238897023616745
6	56902872	56917692	2	neutral	AA	36.3786	somatic	0	0.496617104154273	0.683181424120423
6	60231444	60240336	3	gain	-	-1	germline	1	0.0027014761262067	0.00496048087507561
6	64837500	64852320	2	neutral	AA	100	somatic	0	0.5981726926405	0.427577490413912
6	68835936	69298320	2	neutral	AA	12.1213	somatic	0	1.92848197707889e-07	1.3578894755284e-06
6	72152652	72158580	1	loss	A	-1	somatic	0	0.0271686634261892	0.0546846744996731
6	76729068	76743888	1	loss	A	-1	germline	1	0.000842667419227986	0.00117436319990816
6	103289472	103316148	1	loss	A	-1	germline	1	4.76450227309531e-06	1.21965863297824e-06
6	107797716	107833284	2	neutral	AA	100	somatic	0	0.828655897669298	0.835289223764994
6	111167784	111170748	2	neutral	AA	100	somatic	0	0.419132704832445	0.655453692323714
6	118029444	118038336	2	neutral	AA	100	somatic	0	0.907687778993918	0.808055675201833
6	123598800	123616584	2	neutral	AA	100	somatic	0	0.834700258480008	0.65805127032335
6	124153068	124212348	2	neutral	AA	54.5678	somatic	0	0.0603252932494608	0.170896801603862
6	126545016	126654684	2	neutral	AA	36.3837	somatic	0	0.0183882336015129	0.004238368487816
6	134224740	134230668	2	neutral	AA	54.5678	somatic	0	0.510986276558092	0.832030172042071
6	140958948	141015264	2	neutral	AA	14.0972	somatic	0	0.676901417948653	0.271632976502576
6	142796628	142811448	2	neutral	AA	36.3786	somatic	0	0.0697691823221415	0.0576103510206214
6	150073248	150114744	2	neutral	AA	54.5911	somatic	0	0.671149297968966	0.847226134699355
6	156386568	156407316	2	neutral	AA	100	somatic	0	0.144691467688527	0.349325105497551
6	156682968	157308372	2	neutral	AA	100	somatic	0	0.000794109557441073	0.00115292244695975
6	157308372	157311336	8	gain	AAAAABBB	4.75902	germline	1	0.0832717753242555	0.270049404664018
6	157314300	157355796	2	neutral	AA	98.1619	somatic	0	0.0433493797437664	0.0509071005719915
6	158766660	158858544	2	neutral	AA	32.6411	somatic	0	0.0392155547127547	0.0523482481419421
6	161644704	161659524	2	neutral	AA	84.0028	somatic	0	0.0702017840899529	0.0384631547453407
6	163174128	163180056	2	neutral	AA	100	somatic	0	0.184737377272061	0.419669280801125
6	165032556	165062196	2	neutral	AA	54.5755	somatic	0	0.714630335153702	0.641138478914613
6	165311172	165320064	1	loss	A	-1	germline	1	0.00573842350011566	0.00960625947616955
6	168657528	168731628	2	neutral	AA	14.5481	germline	1	0.0194375486099876	0.0125352777263286
6	170145456	170148420	3	gain	AAB	76.3954	germline	1	0.083276856871987	0.270058230067609
7	904020	906984	5	gain	-	-1	germline	1	0.0832746790350586	0.270054447726005
7	9760452	9766380	1	loss	A	-1	somatic	0	0.0199136031872675	0.0537755008413681
7	52661388	52676208	3	gain	-	-1	germline	1	0.000110321270497428	9.74259749559891e-05
7	57904704	57916560	1	loss	A	-1	germline	1	0.00193138552546568	0.00161182428784667
7	62297352	62356632	3	gain	AAB	0.486564	somatic	0	4.53245420271644e-09	3.46958362040795e-08
7	62401092	62407020	4	gain	-	-1	germline	1	0.0143090853658972	0.03663588164978
7	62436660	62454444	3	gain	AAB	3.10537	germline	1	4.9297552091452e-05	0.00013787482709593
7	62685636	62703420	1	loss	A	-1	germline	1	0.000304979611528411	0.000263114581192658
7	65225784	65228748	0	loss	-	-1	germline	1	0.0832732271694046	0.270051926186423
7	67019004	67021968	3	gain	AAB	9.21051	somatic	0	0.0832783087889044	0.270060751650161
7	69022668	69043416	2	neutral	AA	100	germline	1	0.0848360525508729	0.401261735926181
7	71678412	71681376	3	gain	AAB	38.834	somatic	0	0.0832862946984944	0.270074620661403
7	74304516	74363796	2	neutral	AA	100	somatic	0	0.000979528483556999	0.00439770097966896
7	79248468	79301820	2	neutral	AA	100	somatic	0	0.444313511742334	0.173454146356676
7	82390308	82550364	2	neutral	AA	100	somatic	0	0.037405126816003	0.00103258933052786
7	93697968	93703896	1	loss	A	-1	somatic	0	0.0220209873872632	0.0547462426978392
7	100728576	100740432	1	loss	A	-1	somatic	0	0.00129169807742268	0.00160764755518761
7	100947912	100956804	3	gain	AAB	2.86466	germline	1	0.00270408684773681	0.0049691749009646
7	100956804	100959768	11	gain	AAAAAAABBBB	13.6761	germline	1	0.0832695975949785	0.270045622412642
7	100959768	100977552	3	gain	AAB	0.624272	germline	1	2.22695858798113e-05	1.25758860394232e-05
7	105438372	105462084	2	neutral	AA	36.3786	somatic	0	0.319275725355847	0.579062636283477
7	134272164	134325516	2	neutral	AA	36.3786	germline	1	0.590632067239235	0.723703602196188
7	138614424	138632208	2	neutral	AA	7.34797	somatic	0	0.332248477955296	0.432133727350943
7	143327184	143339040	2	neutral	AA	27.2842	somatic	0	0.506975624521225	0.55453215789615
7	151910928	151919820	2	neutral	AA	54.5678	somatic	0	0.430650008190588	0.891475783822744
7	152394060	152399988	2	neutral	AA	10.1141	germline	1	0.483421644171205	0.845577196748023
7	152399988	152402952	5	gain	AAAAB	15.6276	germline	1	0.0832746790350586	0.270054447726005
7	152402952	152408880	9	gain	AAAAAABBB	19.991	germline	1	0.0143079399317462	0.0366345018949881
7	152414808	152417772	2	neutral	AA	5.40265	germline	1	0.122885977584726	0.333249156867901
7	155325456	155346204	2	neutral	AA	5.55053	germline	1	0.0773518259943878	0.316485278586859
7	155346204	155349168	1	loss	A	-1	somatic	0	0.0847302137789249	0.272573168878878
7	155349168	155352132	4	gain	AAAA	44.7822	germline	1	0.0832746790350586	0.270054447726005
8	337896	376428	2	neutral	AA	100	germline	1	0.0384279208340661	0.112787269487991
8	6111768	6114732	0	loss	-	-1	germline	1	0.0832659681487057	0.270039318746284
8	15149004	15169752	2	neutral	AA	55.6317	somatic	0	0.0524109130398423	0.0123559723079341
8	16476876	16494660	2	neutral	AA	100	somatic	0	0.236359877419103	0.180191505505099
8	21986952	22004736	2	neutral	AA	100	somatic	0	0.50526528706595	0.37284402738335
8	22324848	22345596	2	neutral	AA	54.5787	germline	1	0.617029906836467	0.825554008827932
8	25113972	25131756	1	loss	A	-1	germline	1	5.60447634419854e-05	4.51176698424982e-05
8	25208820	25214748	1	loss	A	-1	germline	1	0.0204382261743092	0.0555976366853539
8	25724556	25730484	3	gain	AAB	39.7012	somatic	0	0.014315615885277	0.0366493366419042
8	39376740	39527904	1	loss	A	-1	germline	1	3.53293183037128e-29	0
8	42331848	42337776	1	loss	A	-1	germline	1	0.0143185955917109	0.0366538225999499
8	43235868	43238832	5	gain	AAABB	9.67293	germline	1	0.0832746790350586	0.270054447726005
8	43238832	43241796	9	gain	AAAAAABBB	1.07787	germline	1	0.0832717753242555	0.270049404664018
8	43241796	43289220	2	neutral	AA	5.41301	somatic	0	0.0248129726080297	0.0925642703621667
8	43775316	43781244	3	gain	AAA	100	somatic	0	0.0143171056701145	0.0366517520980815
8	46493304	46496268	1	loss	A	-1	somatic	0	0.0832841166616328	0.270070838152237
8	46611864	46629648	3	gain	-	-1	germline	1	2.21663407158463e-05	1.23468729087417e-05
8	47047572	47175024	2	neutral	AA	45.9096	somatic	0	0.129529058661742	0.17843803202884
8	47785608	47803392	2	neutral	AA	22.8239	somatic	0	0.48728344375447	0.475780718490704
8	48339876	48648132	2	neutral	AA	54.8585	somatic	0	0.00962907781640232	0.0374503563068536
8	50118276	50127168	1	loss	A	-1	somatic	0	0.00602271646917311	0.00945417187499442
8	51111216	51158640	2	neutral	AA	54.8558	somatic	0	0.00916544819074773	0.0120588855109606
8	54244164	54279732	2	neutral	AA	100	somatic	0	0.197342077655033	0.198212423389088
8	58702020	58737588	2	neutral	AA	100	somatic	0	0.421389829869255	0.736239777357508
8	67336152	67345044	2	neutral	AA	36.3786	somatic	0	0.697136326892902	0.760362006609076
8	68530644	68595852	2	neutral	AA	100	somatic	0	0.00755413528826768	0.0236459739680177
8	69956328	69965220	2	neutral	AA	36.3786	somatic	0	0.685891599645156	0.983748898152966
8	74031828	74055540	2	neutral	AA	28.4703	somatic	0	0.924532439646343	0.311492385422943
8	85336524	85342452	2	neutral	AA	100	somatic	0	0.679293195068675	0.740680789651151
8	87565452	87684012	2	neutral	AA	36.3809	somatic	0	0.263422194674867	0.235034850220433
8	88223460	88398336	2	neutral	AA	100	somatic	0	0.022017261315096	0.015046062924104
8	105509508	105518400	2	neutral	AA	100	somatic	0	0.866485916536124	0.997548372791906
8	106523196	106535052	3	gain	AAB	13.6431	germline	1	0.000532810413394219	0.000671962042541163
8	111280416	111286344	1	loss	A	-1	somatic	0	0.0195001374201819	0.051705532029634
8	114620844	114629736	1	loss	A	-1	germline	1	0.00444674822248783	0.00896441090778077
8	119941224	119994576	2	neutral	AA	54.5705	germline	1	0.465078675614666	0.355388254422533
8	124061184	124067112	2	neutral	AA	100	somatic	0	0.971297394607055	0.828262965360429
8	130869492	130899132	2	neutral	AA	96.0437	somatic	0	0.0662277455862066	0.09844052415227
8	136990152	137002008	2	neutral	AA	100	somatic	0	0.153860392716533	0.292749509731854
8	141812580	141818508	2	neutral	AA	93.3662	somatic	0	0.605867328116625	0.823723522277108
8	143620620	143632476	1	loss	A	-1	germline	1	0.00124171885461885	0.00152404815565255
8	144124500	144127464	5	gain	AAABB	29.9548	germline	1	0.0832732271694046	0.270051926186418
8	144127464	144168960	2	neutral	AA	54.5887	somatic	0	0.149306102899978	0.259941158668642
9	12519936	13287612	2	neutral	AA	24.5185	somatic	0	2.15047223013325e-14	4.84057238736568e-14
9	28581852	28599636	2	neutral	AA	100	somatic	0	0.732032499467217	0.969061321330558
9	29637036	29645928	2	neutral	AA	100	somatic	0	0.676557208672626	0.877282511527837
9	29918616	29936400	2	neutral	AA	100	somatic	0	0.431590176349892	0.856234024410828
9	31255380	31308732	2	neutral	AA	22.2897	somatic	0	0.564118280391202	0.609365237367095
9	31495464	31545852	2	neutral	AA	54.5679	somatic	0	0.871717000317909	0.992103297357575
9	32885580	32900400	2	neutral	AA	100	somatic	0	0.865342131852178	0.967757334794608
9	40867632	40912092	4	gain	AABB	1.47852	germline	1	0.000532237375849261	0.000671114799724037
9	40912092	40915056	5	gain	-	-1	germline	1	0.0832732271694046	0.270051926186418
9	40923948	40926912	6	gain	AAAABB	2.44763	germline	1	0.0832725012442669	0.27005066542307
9	40926912	40929876	6	gain	AAAABB	2.82641	germline	1	0.0832732271694046	0.270051926186418
9	69126408	69129372	1	loss	A	-1	germline	1	0.0833066252676053	0.270109925945073
9	72843264	72849192	1	loss	A	-1	germline	1	0.027755886575773	0.0547648225926448
9	75084048	75146292	2	neutral	AA	21.999	somatic	0	0.28493556505706	0.150691734019427
9	75416016	75519756	2	neutral	AA	21.8552	somatic	0	0.0740275787077094	0.282072611781583
9	76527516	76536408	2	neutral	AA	54.5678	somatic	0	0.31548955976591	0.33556469179017
9	83291364	83297292	2	neutral	AA	100	somatic	0	0.173669088610958	0.214482470877488
9	88837008	88860720	2	neutral	AA	100	somatic	0	0.00479883768435969	0.0571539595517455
9	91620204	91697268	2	neutral	AA	10.8852	germline	1	0.0250970098894302	0.198404363342787
9	101952708	101961600	1	loss	A	-1	germline	1	0.00565095940104262	0.00893896170213615
9	109504980	109608720	2	neutral	AA	24.3026	germline	1	0.779935933106537	0.993470514209239
9	110403072	110450496	2	neutral	AA	36.38	somatic	0	0.0833676638565101	0.0165770846255192
9	120652584	120655548	2	neutral	AA	100	somatic	0	0.38885905420814	0.629330852637691
9	128495328	128557572	2	neutral	AA	29.7796	somatic	0	0.652600565475458	0.876706024613585
9	128649456	128652420	0	loss	-	-1	germline	1	0.0832739530996684	0.270053186954068
9	129428988	129440844	3	gain	AAB	0.269204	germline	1	0.000533448694232753	0.00067335521310663
9	131139216	131192568	2	neutral	AA	63.8091	somatic	0	0.00323327028783323	0.025949343772265
9	132268500	132333708	2	neutral	AA	68.6791	somatic	0	0.030060404356529	0.079251948975729
9	137354724	137357688	3	gain	AAB	17.43	germline	1	0.0832812126842564	0.270065794866824
9	137357688	137363616	1	loss	A	-1	germline	1	0.0207845157890181	0.056509109334106
10	370500	447564	2	neutral	AA	38.8194	somatic	0	0.588929354857136	0.669194022418282
10	4247412	4250376	1	loss	A	-1	somatic	0	0.0861510302234701	0.27501439209104
10	17739540	17784000	2	neutral	AA	58.3297	somatic	0	0.856344921255719	0.687653032173138
10	24358152	24364080	2	neutral	AA	43.4639	somatic	0	0.486548214607974	0.564477092831058
10	24533028	24541920	2	neutral	AA	54.5785	somatic	0	0.260334509647947	0.523734752848922
10	26536692	26628576	2	neutral	AA	2.56876	somatic	0	0.00159369575221285	0.0316853342503726
10	26634504	26658216	2	neutral	AA	2.3599	germline	1	0.523206952010379	0.416008155610111
10	26924976	26969436	2	neutral	AA	17.1716	somatic	0	0.00417298441781506	0.0285184217305781
10	38484576	38502360	3	gain	AAB	6.65318	germline	1	5.58032352252078e-05	0.000165977325486288
10	38502360	38514216	1	loss	A	-1	germline	1	0.00230433075740653	0.00204325560261853
10	38526072	38529036	14	gain	AAAAAAAAAAAAAB	20.1739	germline	1	0.0832681458010911	0.270043100933207
10	38573496	38582388	3	gain	AAA	85.5968	somatic	0	0.250067480295572	0.139449015194417
10	38582388	38594244	1	loss	A	-1	somatic	0	0.00165029905303201	0.00161859706066281
10	38783940	38822472	3	gain	AAB	0.853814	somatic	0	5.29527232471802e-07	2.91948302355571e-06
10	41857608	41899104	29	gain	AAAAAAAAAAAAAAAAAAABBBBBBBBBB	8.65637	germline	1	2.20952501466748e-05	1.22915491250764e-05
10	44332548	44344404	2	neutral	AA	100	somatic	0	0.501114584346694	0.827158743362733
10	46057596	46105020	2	neutral	AA	36.3786	germline	1	0.182513131131334	0.463471479222615
10	46514052	46561476	4	gain	AABB	0.50161	germline	1	9.14304467922129e-11	1.38500322321988e-12
10	47020896	47047572	2	neutral	AA	91.0822	somatic	0	0.157988879999374	0.244764359264117
10	53117844	53126736	2	neutral	AA	100	somatic	0	0.324818047746169	0.730648167703525
10	69520620	69532476	1	loss	A	-1	germline	1	0.00171177835128389	0.00159047517903244
10	76494912	76497876	0	loss	-	-1	germline	1	0.0832710494093703	0.270048143909268
10	76524552	76933584	2	neutral	AA	12.6217	somatic	0	1.27916824541978e-06	0.000210384767867167
10	97912776	97924632	2	neutral	AA	100	somatic	0	0.768708260334969	0.960658518027859
10	99163584	99323640	2	neutral	AA	67.4643	somatic	0	0.0847281059871622	0.187502275157583
10	106280148	106354248	2	neutral	AA	46.2926	somatic	0	0.249282541590399	0.135221908228634
10	128089260	128145576	2	neutral	AA	100	somatic	0	0.476285927344383	0.247792970839323
10	128462724	128465688	8	gain	AAAAAAAA	100	germline	1	0.0832717753242555	0.270049404664018
10	131566032	131755728	2	neutral	AA	100	somatic	0	0.380723906572537	0.470617006828393
10	132363348	132366312	4	gain	AAAB	16.5484	somatic	0	0.0832746790350586	0.270054447726005
11	1348620	1372332	2	neutral	AA	100	somatic	0	0.471622399534785	0.575107511262899
11	2308956	2350452	2	neutral	AA	55.6088	somatic	0	0.821241472176139	0.736841378667923
11	4946916	4952844	1	loss	A	-1	germline	1	0.0220331902873965	0.0475036531568666
11	8337732	8397012	2	neutral	AA	27.3457	somatic	0	0.923377634694175	0.920806711237448
11	8568924	8577816	2	neutral	AA	100	somatic	0	0.0542830215807745	0.0614225032268044
11	13877448	13915980	2	neutral	AA	54.8373	somatic	0	0.0049427264701301	0.0303128705857989
11	28984956	28987920	0	loss	-	-1	germline	1	0.0832695975949785	0.270045622412647
11	30606264	30632940	2	neutral	AA	100	somatic	0	0.278909839654212	0.0960455461341002
11	31370976	31376904	1	loss	A	-1	germline	1	0.0143831369496263	0.0368579223962348
11	31376904	31599204	2	neutral	AA	87.4982	somatic	0	0.519516057891925	0.34866817860749
11	41617524	41688660	2	neutral	AA	83.2826	somatic	0	0.0858415868521031	0.0766360404394613
11	42708276	42729024	2	neutral	AA	36.3786	somatic	0	0.264757150394447	0.553681455432738
11	47901204	47910096	2	neutral	AA	54.5678	somatic	0	0.662936896291725	0.870343297511491
11	54756936	54777684	1	loss	A	-1	germline	1	6.08816450166026e-05	3.7618941633788e-05
11	55118544	55124472	1	loss	A	-1	somatic	0	0.0197823961015133	0.0464080146180309
11	63631152	63637080	2	neutral	AA	54.5678	somatic	0	0.975809232256521	0.99942013420261
11	82144296	82153188	1	loss	A	-1	germline	1	0.00555842458310986	0.00946502557877094
11	87221628	87301656	2	neutral	AA	36.5707	somatic	0	0.193027006116871	0.0445835340111372
11	88353876	88742160	2	neutral	AA	84.2978	somatic	0	3.0139960221928e-11	1.30137293163912e-08
11	91116324	91128180	2	neutral	AA	100	somatic	0	0.940360431152819	0.61113301318333
11	93890628	94225560	2	neutral	AA	46.1276	somatic	0	0.00962856052022409	0.129218941123446
11	95325204	95417088	2	neutral	AA	100	somatic	0	7.52364288034512e-06	2.1485675643973e-05
11	96561192	96567120	0	loss	-	-1	germline	1	0.0143090853658972	0.0366365715442273
11	99104304	99415524	2	neutral	AA	35.8752	germline	1	1.31726570438487e-07	2.80808247876685e-07
11	105983748	106057848	2	neutral	AA	100	somatic	0	0.913265691350432	0.985116807754434
11	120326544	120424356	2	neutral	AA	12.0749	somatic	0	0.0202963961045387	0.0522341564814657
11	134731584	134734548	0	loss	-	-1	germline	1	0.0832674199118366	0.27004184019994
12	2137044	2148900	1	loss	A	-1	germline	1	0.00163536410718932	0.00148244348317939
12	2255604	2258568	5	gain	-	-1	germline	1	0.0832746790350586	0.270054447726005
12	11384724	11390652	3	gain	-	-1	germline	1	0.0143163034612859	0.0366493366419042
12	18095220	18101148	1	loss	A	-1	somatic	0	0.0212623420892048	0.0577930043734792
12	33235332	33241260	1	loss	A	-1	somatic	0	0.023657690851973	0.0525071019565424
12	34103784	34115640	1	loss	A	-1	germline	1	0.00112596283471504	0.00164434803280389
12	37595376	37752468	2	neutral	AA	1.20182	germline	1	0.00123694496896562	0.00433552395994696
12	38612028	38641668	2	neutral	AA	54.5678	somatic	0	0.17124730974636	0.181574064124743
12	39711672	39714636	1	loss	A	-1	germline	1	0.0833037206544884	0.270104882126881
12	45509256	45512220	0	loss	-	-1	germline	1	0.0832652422748292	0.270038058025901
12	58195176	58373016	2	neutral	AA	70.6931	somatic	0	4.0200937408934e-06	0.000229882335257892
12	59540832	59552688	1	loss	A	-1	germline	1	0.00114248123123483	0.00159225833652599
12	60127704	60133632	1	loss	A	-1	somatic	0	0.0240664270373845	0.063490621110873
12	70940376	71133036	2	neutral	AA	7.08448	somatic	0	0.607162535082729	0.292418323708242
12	72226752	72380880	2	neutral	AA	27.7497	somatic	0	0.440056649967763	0.329043624827971
12	73462740	73664292	2	neutral	AA	37.9587	somatic	0	0.00865853624711603	0.000149972093798856
12	92512368	92592396	2	neutral	AA	9.90541	germline	1	0.015682751861621	0.0550094749838347
12	95615676	95618640	1	loss	A	-1	somatic	0	0.0832826646626914	0.27006831650094
12	101917140	101994204	2	neutral	AA	27.3046	somatic	0	0.35126431595233	0.438354257253189
12	112279284	112679424	2	neutral	AA	13.771	somatic	0	0.178661682613083	0.147869702649995
12	119905656	119950116	2	neutral	AA	36.3994	somatic	0	0.0727529365991806	0.220830589060751
12	121897464	121930068	2	neutral	AA	27.284	somatic	0	0.952746621762898	0.898946185967588
12	128083332	128086296	1	loss	A	-1	somatic	0	0.0859095496247343	0.274600679801214
13	22019556	22022520	0	loss	-	-1	germline	1	0.0832674199118366	0.27004184019994
13	28970136	29038308	2	neutral	AA	56.55	somatic	0	0.0110102855805726	0.00507467776473947
13	35956284	35959248	3	gain	AAB	19.5152	germline	1	0.0833029945140274	0.27010362118307
13	37497564	37512384	1	loss	A	-1	germline	1	0.000254302964068217	0.000261916920035965
13	42192540	42213288	2	neutral	AA	54.5702	somatic	0	0.625459584799726	0.726692320383275
13	44670444	44679336	2	neutral	AA	100	somatic	0	0.510184618654626	0.815964583695321
13	45423300	45426264	1	loss	A	-1	germline	1	0.0833124347399539	0.270120013787699
13	48959352	48962316	1	loss	A	-1	germline	1	0.109251331875423	0.312597576907377
13	49276500	49282428	2	neutral	AA	27.284	somatic	0	0.8145569881724	0.962042004618019
13	56277468	56310072	2	neutral	AA	100	somatic	0	0.0506488577286295	0.0639004004995916
13	56440488	56606472	2	neutral	AA	100	somatic	0	2.51995174339284e-05	2.43903922610977e-05
13	61339980	61354800	2	neutral	AA	38.0549	somatic	0	0.483174743512375	0.758540726514596
13	63035388	63044280	3	gain	AAB	1.04071	germline	1	0.0027043793920649	0.00497001699912392
13	63059100	63065028	3	gain	AAB	1.01329	germline	1	0.0143164180601196	0.0366579639106913
13	63065028	63067992	5	gain	AAABB	0.947825	germline	1	0.0832732271694046	0.270051926186418
13	68213496	68243136	2	neutral	AA	100	somatic	0	0.0385691492813615	0.183355679812042
13	70792176	70804032	2	neutral	AA	54.5914	somatic	0	0.401426716382468	0.627172994887659
13	72271212	72274176	1	loss	A	-1	somatic	0	0.0876742465320051	0.277612915813808
13	74793576	74796540	2	neutral	AA	100	somatic	0	0.562003233244776	0.764702868254371
13	75330060	75333024	2	neutral	AA	100	somatic	0	0.571928738584046	0.771422984896388
13	79648608	79663428	2	neutral	AA	100	somatic	0	0.86410900325222	0.761298556454616
13	80472600	80508168	2	neutral	AA	100	somatic	0	0.434381200724119	0.94451476240661
13	82461444	82479228	2	neutral	AA	100	somatic	0	0.128096651478309	0.0541128853522066
13	82591860	82597788	1	loss	A	-1	germline	1	0.0214611516143742	0.0544039784046695
13	89106732	89160084	2	neutral	AA	27.2927	germline	1	0.00111797356325805	0.000255159894295587
13	93117024	93161484	2	neutral	AA	100	somatic	0	0.0890661302790202	0.230838204446066
13	93816528	93834312	2	neutral	AA	54.8601	somatic	0	0.0367176416956264	0.0930318329315887
13	98603388	98606352	1	loss	A	-1	germline	1	0.0832979116743619	0.270094794696738
13	100292868	100334364	2	neutral	AA	100	germline	1	0.358850584341834	0.360599070962053
13	101241348	101244312	0	loss	-	-1	germline	1	0.0832695975949785	0.270045622412647
13	103416924	103443600	3	gain	AAA	72.1386	germline	1	7.98300207462495e-07	1.7884276432012e-06
13	104857428	104863356	2	neutral	AA	100	germline	1	0.07792049055951	0.152181147947658
13	109021848	109024812	1	loss	A	-1	germline	1	0.0835632806297198	0.270555313659852
13	109235256	109256004	2	neutral	AA	36.379	somatic	0	0.301808868913081	0.452697469980036
14	16091556	16094520	8	gain	-	-1	germline	1	0.0832717753242555	0.270049404664018
14	18658380	18661344	5	gain	AAABB	24.7854	germline	1	0.0832746790350586	0.270054447726005
14	18685056	18693948	3	gain	AAB	47.7011	germline	1	0.0143649659922196	0.0367588620621847
14	31376904	31477680	2	neutral	AA	32.1463	somatic	0	0.653755903053165	0.657417084741168
14	34346832	34352760	1	loss	A	-1	somatic	0	0.0309482831281876	0.061412979658681
14	35938500	35947392	2	neutral	AA	36.7326	somatic	0	0.715683559823676	0.718718585191576
14	36543156	36566868	2	neutral	AA	100	somatic	0	0.234394472090799	0.398424107328569
14	37298976	37301940	1	loss	A	-1	somatic	0	0.084781023362899	0.27266203283617
14	43736784	43766424	2	neutral	AA	100	somatic	0	0.192076475074454	0.155983702755153
14	48443616	48446580	3	gain	-	-1	somatic	0	0.0832812126842564	0.270065794866824
14	52848120	52859976	2	neutral	AA	27.2839	somatic	0	0.965003797317231	0.708367188783894
14	56911764	56962152	2	neutral	AA	27.3292	somatic	0	0.152022678855748	0.153057072081439
14	64535172	64541100	2	neutral	AA	100	somatic	0	0.978057977278866	0.857239271628603
14	69096768	69265716	2	neutral	AA	100	somatic	0	0.00615969476608553	0.0170098768953394
14	70362396	70439460	2	neutral	AA	100	somatic	0	0.00101544207240368	0.000975399550539047
14	73634652	73779888	2	neutral	AA	17.4404	germline	1	0.925573563669799	0.967689456580048
14	76779456	76859484	2	neutral	AA	33.4594	somatic	0	0.0605084943457164	0.0180539356124884
14	86056776	86074560	2	neutral	AA	37.5813	somatic	0	0.391502162309513	0.73903264968813
14	92607216	92660568	2	neutral	AA	54.5792	somatic	0	0.450023831158273	0.761937307525394
14	97829784	97942416	2	neutral	AA	100	somatic	0	0.0159206350499246	0.0722612915762104
14	105334632	105358344	2	neutral	AA	12.4897	somatic	0	0.596364585266956	0.922849614702237
15	0	20338968	4	gain	AABB	-1	germline	1	0.261243440150782	0.233054546050854
15	20338968	20341932	6	gain	AAAABB	6.89856	germline	1	0.0832725012442669	0.27005066542307
15	20341932	20344896	3	gain	AAB	27.6305	germline	1	0.083346572017773	0.27017928541668
15	20344896	20395284	4	gain	AABB	1.64501	germline	1	4.5966441156648e-06	1.6641264946049e-06
15	20647224	20670936	4	gain	AAAB	2.52651	germline	1	4.59654246333309e-06	1.6641264946049e-06
15	22224072	22250748	2	neutral	AA	100	somatic	0	0.115481094142368	0.285452751336156
15	23726820	23747568	2	neutral	AA	30.0243	somatic	0	0.164297188432702	0.340430734833804
15	24580452	24592308	2	neutral	AA	54.5679	somatic	0	0.621653485523127	0.989575403758242
15	24956880	24986520	2	neutral	AA	100	somatic	0	0.367629239679257	0.235558473113677
15	26957580	26963508	2	neutral	AA	100	somatic	0	0.40518747827083	0.848051835403183
15	34026720	34038576	2	neutral	AA	86.5103	somatic	0	0.641393012130065	0.815747071747691
15	34435752	34518744	1	loss	A	-1	germline	1	3.50821594992589e-16	0
15	34580988	34592844	2	neutral	AA	93.4791	somatic	0	0.620518553823139	0.90870196240449
15	38280060	38283024	2	neutral	AA	71.3319	somatic	0	0.187307703123441	0.420010803464872
15	40900236	40903200	2	neutral	AA	100	somatic	0	0.816700443843548	0.904870879651912
15	41424864	41427828	2	neutral	AA	100	somatic	0	0.320377493030964	0.565678272346701
15	47406216	47412144	2	neutral	AA	100	somatic	0	0.837252872723518	0.982226439908128
15	48674808	48680736	2	neutral	AA	100	somatic	0	0.12086081202091	0.330684017681115
15	50485812	50497668	2	neutral	AA	54.5782	somatic	0	0.103527755416369	0.143527195982786
15	50651796	50660688	2	neutral	AA	22.3401	somatic	0	0.0454169557145866	0.132231853748167
15	53248260	53390532	2	neutral	AA	42.8764	somatic	0	0.275529064505988	0.344274942319255
15	53467596	53470560	2	neutral	AA	100	somatic	0	0.671907327098147	0.833514778950621
15	53814384	53817348	2	neutral	AA	100	somatic	0	0.657256937850841	0.82506697563775
15	55812120	55924752	2	neutral	AA	16.2538	somatic	0	0.199539425000189	0.33944243192357
15	56464200	56473092	2	neutral	AA	100	somatic	0	0.940218176718674	0.848316208149477
15	56742816	56757636	2	neutral	AA	100	somatic	0	0.0780640075432229	0.0828308855223997
15	56852484	56855448	2	neutral	AA	100	somatic	0	0.631535831395627	0.809756667768093
15	57712044	57715008	2	neutral	AA	100	somatic	0	0.379407928947032	0.620942669599153
15	57777252	57815784	2	neutral	AA	54.5683	somatic	0	0.949649212754954	0.698494473858322
15	61914996	61950564	2	neutral	AA	100	somatic	0	0.251572671179591	0.430025962041358
15	64710048	64715976	2	neutral	AA	54.598	somatic	0	0.108440453773047	0.212362596162049
15	66645540	66672216	2	neutral	AA	22.3686	somatic	0	0.695832197345555	0.981999211318387
15	69422808	69425772	2	neutral	AA	100	somatic	0	0.816622856179937	0.904819431728052
15	72093372	72096336	0	loss	-	-1	germline	1	0.0832732271694046	0.270051926186423
15	72194148	72200076	2	neutral	AA	54.5787	somatic	0	0.514994971473149	0.419714699976164
15	72321600	72327528	2	neutral	AA	36.3792	germline	1	0.725282640639389	0.941402291845771
15	74725404	74737260	2	neutral	AA	54.5678	somatic	0	0.284532708845465	0.605208457329797
15	75899148	75902112	2	neutral	AA	100	somatic	0	0.821045027766196	0.90668749025251
15	75937680	75955464	2	neutral	AA	54.5679	somatic	0	0.110714162933324	0.329392205730707
15	76171836	76207404	2	neutral	AA	100	somatic	0	0.449988492795417	0.838648517234284
15	76248900	76850592	2	neutral	AA	15.0799	somatic	0	1.65904647409448e-10	9.04114266231382e-07
15	77037324	77040288	1	loss	A	-1	germline	1	0.0833124347399539	0.270120013787699
15	78009516	78024336	2	neutral	AA	54.5678	somatic	0	0.0791330017253604	0.219291712787817
15	81907176	81957564	2	neutral	AA	37.5561	somatic	0	0.521746504565498	0.295940699728067
15	82668924	82704492	2	neutral	AA	21.8277	somatic	0	0.935989889274681	0.943540502171363
15	85028268	85031232	2	neutral	AA	100	somatic	0	0.372389654407589	0.614607721891442
15	85967856	85976748	1	loss	A	-1	somatic	0	0.0211207551418235	0.0542054187302456
15	89379420	89382384	2	neutral	AA	100	somatic	0	0.447064655818827	0.678643665804813
15	90111528	90129312	2	neutral	AA	35.5715	germline	1	0.0809106786611014	0.162891038391645
15	90787320	90796212	2	neutral	AA	54.5707	somatic	0	0.722211163966847	0.979283809142292
15	90861420	90864384	2	neutral	AA	100	somatic	0	0.0971173843735623	0.293330563519834
15	91294164	91297128	2	neutral	AA	36.3786	somatic	0	0.731479130696874	0.865537485879421
15	94744260	94770936	2	neutral	AA	21.3559	somatic	0	0.455619344463056	0.620322104796474
15	97272552	97290336	1	loss	A	-1	germline	1	5.270981034675e-05	4.21160154812084e-05
15	98452224	98455188	2	neutral	AA	100	somatic	0	0.0977908911887548	0.294422587716437
15	98541144	98627100	2	neutral	AA	18.1923	somatic	0	0.569047648748929	0.591403202574217
15	99187296	99190260	2	neutral	AA	100	somatic	0	0.902418746006817	0.936762267080248
15	100758216	100761180	2	neutral	AA	100	somatic	0	0.308373524753891	0.553884327373964
15	101457720	101463648	2	neutral	AA	37.063	germline	1	0.647573745638002	0.61987506612606
16	41496	163020	2	neutral	AA	7.213	somatic	0	0.0620218956088065	0.012566342119094
16	844740	847704	4	gain	AABB	76.7759	germline	1	0.0832754049755751	0.270055708502243
16	912912	957372	2	neutral	AA	32.8791	somatic	0	0.143006668118692	0.541846588429007
16	1022580	1025544	4	gain	AABB	11.2241	germline	1	0.0832754049755751	0.270055708502243
16	12380628	12383592	1	loss	A	-1	somatic	0	0.117522406080223	0.325229981649113
16	21557172	21583848	4	gain	AABB	4.1876	germline	1	2.03686008605494e-07	3.04928875483057e-08
16	22615320	22662744	4	gain	AABB	8.39017	germline	1	1.9741209389955e-11	1.87516668859189e-13
16	22662744	22689420	4	gain	AAAB	6.43407	germline	1	2.03665174185955e-07	3.04838450038147e-08
16	22689420	22698312	4	gain	AABB	8.80983	germline	1	0.00270070379452614	0.00495858967056662
16	24126960	24171420	2	neutral	AA	100	germline	1	0.0600349204299905	0.14835156117624
16	29693352	29903796	2	neutral	AA	69.6999	somatic	0	0.129796828246125	0.126290635243042
16	34062288	34065252	21	gain	AAAAAAAAAAAAAABBBBBBB	6.40415	germline	1	0.0832674199118366	0.270041840199935
16	34083036	34086000	10	gain	AAAAAABBBB	20.6803	germline	1	0.0832703234996113	0.270046883158804
16	34094892	34100820	6	gain	AAAABB	1.41778	germline	1	0.0143086271825304	0.03663588164978
16	34204560	34207524	4	gain	AAAA	7.76282	germline	1	0.0832746790350586	0.270054447726005
16	34207524	34210488	2	neutral	AA	7.27582	somatic	0	0.496668609768566	0.717540887566041
16	34210488	34213452	4	gain	AAAB	2.11386	germline	1	0.0832746790350586	0.270054447726005
16	34219380	34954452	2	neutral	AA	1.34377	somatic	0	6.62793423517671e-13	2.82463652467868e-09
16	35991852	36089664	2	neutral	AA	26.3784	somatic	0	0.277159747872047	0.275026053310014
16	36122268	36125232	4	gain	-	-1	germline	1	0.0832746790350586	0.270054447726005
16	46401420	46404384	18	gain	AAAAAAAAAAAAAAAAAA	2.57867	germline	1	0.0832674199118366	0.270041840199935
16	46404384	46469592	2	neutral	AA	0.821248	germline	1	3.40649388259865e-06	2.68885575249733e-06
16	46469592	46502196	2	neutral	AA	100	somatic	0	0.469438511610809	0.629653263219989
16	55746912	56043312	2	neutral	AA	35.0079	germline	1	0.274637769009532	0.0905852284726921
16	59677176	59697924	2	neutral	AA	97.5467	germline	1	0.272790238279748	0.370242120029671
16	60530808	60539700	1	loss	A	-1	germline	1	0.00496347301948212	0.00935574557375018
16	62573004	62599680	2	neutral	AA	100	somatic	0	0.0723203448574523	0.225954287085383
16	63927552	63939408	2	neutral	AA	100	somatic	0	0.730250794330874	0.859338396527751
16	65320632	65323596	1	loss	A	-1	germline	1	0.0845624963903015	0.272283872434479
16	71636916	71814756	2	neutral	AA	53.8973	somatic	0	0.494655859556994	0.753137874932436
16	72004452	72105228	2	neutral	AA	100	somatic	0	0.0152051819707329	0.0766635217746576
16	74108892	74111856	1	loss	A	-1	germline	1	0.102276166708295	0.301631247332492
16	76503804	76509732	1	loss	A	-1	somatic	0	0.0256681760599607	0.0554338643044021
16	86418384	86442096	2	neutral	AA	10.0738	somatic	0	0.848713458088442	0.901097146780711
16	88392408	88422048	2	neutral	AA	53.1041	somatic	0	0.337442910302913	0.364303433078455
17	444600	509808	2	neutral	AA	27.284	somatic	0	0.473088052865401	0.440953403964401
17	604656	773604	2	neutral	AA	10.8846	somatic	0	0.969027178592638	0.587160493655941
17	5957640	6002100	2	neutral	AA	36.8332	somatic	0	0.738154036884791	0.711267592046207
17	7463352	7638228	2	neutral	AA	18.1914	somatic	0	0.897018512496978	0.49064283081355
17	7813104	8091720	2	neutral	AA	12.3926	somatic	0	0.00261979534782154	0.00642162992564199
17	8432580	8494824	2	neutral	AA	100	somatic	0	0.181048350153773	0.413332086312117
17	9188400	9191364	2	neutral	AA	100	somatic	0	0.208905744279278	0.44618617305789
17	9493692	9496656	2	neutral	AA	100	somatic	0	0.277931262339496	0.522824645903122
17	9748596	9751560	2	neutral	AA	100	somatic	0	0.104755345397006	0.305571589944596
17	11725584	11728548	2	neutral	AA	100	somatic	0	0.155327469250071	0.378811676238935
17	12997140	13026780	2	neutral	AA	41.4386	somatic	0	0.223368757801201	0.108037146844993
17	16426488	16453164	2	neutral	AA	100	somatic	0	0.974544001417491	0.55028326708638
17	17238624	17244552	2	neutral	AA	100	somatic	0	0.0721246243681833	0.130800903828377
17	21290412	21305232	4	gain	AABB	0.251044	germline	1	0.000107569929430068	9.08329946699427e-05
17	21675732	21859500	4	gain	-	-1	germline	1	9.79603074255621e-07	2.44239737434704e-07
17	21859500	21886176	3	gain	-	-1	somatic	0	3.44791816869459e-07	3.54272867930661e-07
17	21886176	21969168	1	loss	A	-1	germline	1	2.11314176166487e-11	1.01030295240889e-14
17	21975096	21978060	21	gain	-	-1	germline	1	0.0832674199118366	0.270041840199935
17	21978060	21989916	8	gain	-	-1	germline	1	0.00270039074457029	0.00495823952004926
17	22123296	22129224	6	gain	-	-1	germline	1	0.0143086271825304	0.03663588164978
17	22129224	22158864	6	gain	AAAABB	0.291363	germline	1	4.32471324315263e-08	4.12580203335011e-09
17	22695348	22719060	2	neutral	AA	21.691	somatic	0	0.922191507034727	0.966843648335764
17	26782704	26791596	3	gain	-	-1	germline	1	0.00270112124605204	0.00495943012429145
17	26809380	26827164	4	gain	-	-1	germline	1	2.21114849486526e-05	1.23047495171891e-05
17	26865696	26868660	7	gain	-	-1	germline	1	0.0832717753242555	0.270049404664018
17	26868660	26877552	3	gain	-	-1	germline	1	0.00270965013759898	0.00498139813437404
17	26877552	26880516	5	gain	-	-1	germline	1	0.0832746790350586	0.270054447726005
17	26936832	26939796	12	gain	AAAAAAAABBBB	3.10114	germline	1	0.0832688716954717	0.270044361670776
17	29571828	29586648	2	neutral	AA	100	somatic	0	0.165735221784843	0.171638310796313
17	32692920	32728488	2	neutral	AA	54.7752	somatic	0	0.0196648168230112	0.115226921645143
17	39776880	39779844	2	neutral	AA	100	somatic	0	0.40979997575302	0.647536178020502
17	41718300	41727192	2	neutral	AA	54.571	somatic	0	0.706207517676162	0.903477812748043
17	42776448	42779412	2	neutral	AA	100	somatic	0	0.313421474158272	0.558862212159153
17	43763460	43766424	2	neutral	AA	100	somatic	0	0.112878884684893	0.318199560565245
17	49457304	49460268	2	neutral	AA	100	somatic	0	0.928525888919101	0.944935037079976
17	55743948	55829904	2	neutral	AA	54.5678	somatic	0	0.00109184348308491	0.00463664866041702
17	56790240	56813952	2	neutral	AA	25.2256	somatic	0	0.058308348173585	0.0956422249795678
17	57386004	57480852	2	neutral	AA	17.2168	somatic	0	0.0274328077766765	0.154376252477124
17	58284096	58295952	2	neutral	AA	54.5678	somatic	0	0.835340988248872	0.926646536625199
17	58616064	59084376	2	neutral	AA	100	somatic	0	0.000925800188020591	0.000171276353676642
17	61188816	61212528	2	neutral	AA	27.3754	somatic	0	0.0783562248492868	0.27236390039453
17	63983868	64010544	2	neutral	AA	100	somatic	0	0.452438006154043	0.457167200100326
17	66114984	66129804	2	neutral	AA	100	somatic	0	0.0807187365192052	0.317360613911798
17	67493244	67576236	2	neutral	AA	13.1408	somatic	0	0.970699907450971	0.769849398283812
17	68604744	68637348	2	neutral	AA	100	somatic	0	0.00849529140589535	0.142190057402437
17	69422808	69431700	2	neutral	AA	54.5693	somatic	0	0.191330758687081	0.351322132144279
17	69985968	69988932	1	loss	A	-1	somatic	0	0.124532293275942	0.335650889841931
17	74571276	74630556	2	neutral	AA	100	somatic	0	0.0115708490989853	0.0602019336930004
17	75789480	75804300	2	neutral	AA	54.5678	somatic	0	0.460772084035251	0.547791580246058
17	76429704	76447488	2	neutral	AA	54.5707	somatic	0	0.00375576100905745	0.00775159076265197
17	77959128	77976912	2	neutral	AA	100	somatic	0	0.040355919784495	0.0445556072221744
17	79500408	79521156	2	neutral	AA	36.7141	somatic	0	0.0329216384341101	0.0432910970743742
17	79654536	79657500	2	neutral	AA	100	somatic	0	0.694524322919843	0.846105141017344
17	79853124	79864980	2	neutral	AA	54.5782	somatic	0	0.788479873255176	0.951944375577605
17	80742324	80745288	4	gain	AAAA	3.08931	germline	1	0.0832746790350586	0.270054447726005
17	81987204	81999060	2	neutral	AA	42.4518	somatic	0	0.262036684165495	0.669347079447681
18	1176708	1179672	2	neutral	AA	100	somatic	0	0.113211627582172	0.318698445507566
18	3343392	3346356	2	neutral	AA	100	somatic	0	0.634763830896261	0.811687562871554
18	6076200	6079164	1	loss	A	-1	somatic	0	0.12350270847017	0.334135815732405
18	10898628	10904556	2	neutral	AA	100	somatic	0	0.593984834355982	0.466299642371339
18	11509212	11512176	1	loss	A	-1	germline	1	0.0832971855749181	0.270093533787305
18	12060516	12090156	2	neutral	AA	25.4112	somatic	0	0.292538627969793	0.286532668328739
18	22547148	22553076	2	neutral	AA	7.27576	somatic	0	0.513934801243149	0.709105712951348
18	25887576	25899432	2	neutral	AA	100	somatic	0	0.68463156948425	0.786632894837984
18	29453268	29459196	2	neutral	AA	100	somatic	0	0.048549028061316	0.0934774739170697
18	29592576	29604432	2	neutral	AA	35.2981	germline	1	0.128593767017277	0.376452310411938
18	31000476	31012332	2	neutral	AA	100	somatic	0	0.435496514652137	0.533420511758088
18	31996380	32014164	2	neutral	AA	36.3786	germline	1	0.148736637029625	0.208700095479728
18	33410208	33419100	2	neutral	AA	100	somatic	0	0.213128029434313	0.322824325335914
18	36145980	36172656	2	neutral	AA	100	somatic	0	0.360731047633756	0.347060802260955
18	36845484	36901800	2	neutral	AA	93.3474	somatic	0	0.238225570237815	0.523740658917947
18	38540892	38552748	2	neutral	AA	100	germline	1	0.715996970852126	0.604358323440873
18	41276664	41279628	2	neutral	AA	40.1425	somatic	0	0.36723489420563	0.609896795233567
18	41282592	41285556	1	loss	A	-1	germline	1	0.12302953378901	0.333437768124263
18	41285556	41288520	0	loss	-	-1	germline	1	0.0832666940277081	0.270040579470963
18	43935372	43944264	2	neutral	AA	54.5678	somatic	0	0.766328934087937	0.940300627894931
18	45132828	45138756	2	neutral	AA	36.4554	somatic	0	0.860189199849384	0.744798430941438
18	47744112	47747076	2	neutral	AA	100	somatic	0	0.679836310730122	0.838048955395907
18	48502896	48505860	3	gain	-	-1	somatic	0	0.0837705974585253	0.270916558740669
18	49641072	49644036	2	neutral	AA	100	somatic	0	0.733321694481398	0.86649065231683
18	49655892	49860408	2	neutral	AA	9.87664	somatic	0	0.157939386612475	0.160466176425479
18	53429064	53432028	2	neutral	AA	100	somatic	0	0.722013347249421	0.860691843102482
18	53633580	53636544	2	neutral	AA	100	somatic	0	0.910749285274329	0.939460052411329
18	53879592	53992224	2	neutral	AA	88.2553	somatic	0	0.0119245308768123	0.00967704445363826
18	54798432	54807324	2	neutral	AA	100	somatic	0	0.268363675396408	0.260184203889592
18	54842892	54878460	2	neutral	AA	54.5873	somatic	0	0.503258253486764	0.777599661925575
18	56579796	57205200	2	neutral	AA	100	somatic	0	0.588924868304392	0.058384313711616
18	57394896	57397860	2	neutral	AA	100	somatic	0	0.909247841033848	0.938944978821846
18	62641176	62644140	2	neutral	AA	100	somatic	0	0.330512266388739	0.575518218799828
18	64372152	64375116	2	neutral	AA	100	somatic	0	0.731738315702457	0.865694223247623
18	64544064	64547028	1	loss	A	-1	germline	1	0.119749091494537	0.328567398840664
18	65042016	65068692	2	neutral	AA	100	germline	1	0.12620023941299	0.0884470654278543
18	70065996	70086744	2	neutral	AA	98.836	somatic	0	0.532896483155629	0.651762938577974
18	70175664	70196412	2	neutral	AA	100	somatic	0	0.910501739109804	0.994851563152096
18	70246800	70264584	2	neutral	AA	54.5679	somatic	0	0.442800671143106	0.608894164169597
18	71218992	71224920	2	neutral	AA	100	somatic	0	0.581524180072287	0.617857893091491
18	71862180	71954064	2	neutral	AA	36.38	somatic	0	0.0616945764307376	0.0616849056835262
18	73649472	73685040	2	neutral	AA	77.4517	somatic	0	0.0304594304681067	0.0293173232464845
18	74615736	74618700	3	gain	-	-1	germline	1	0.0832841166616328	0.270070838152232
18	75009948	75012912	2	neutral	AA	100	somatic	0	0.208868817925728	0.446151191948441
18	76966188	76978044	2	neutral	AA	5.42555	somatic	0	0.0710106943264096	0.344254132003492
18	77947272	77959128	2	neutral	AA	20.4772	somatic	0	0.537024124831287	0.759477039871089
18	78670488	79121016	2	neutral	AA	28.2574	somatic	0	0.648553466627134	0.445693786496057
18	79198080	79201044	3	gain	AAB	37.1479	germline	1	0.0832775828278825	0.270059490856736
18	79491516	79512264	2	neutral	AA	5.89477	germline	1	0.0109894928076043	0.0523155482792159
19	7448532	7451496	10	gain	AAAAAAABBB	100	germline	1	0.0832703234996113	0.270046883158804
19	8856432	8918676	2	neutral	AA	5.62428	somatic	0	0.574855109485209	0.725845012493402
19	9419592	9437376	2	neutral	AA	67.9645	somatic	0	0.251338799900199	0.0997074224864705
19	12297636	12333204	2	neutral	AA	100	somatic	0	0.21581729820776	0.224713509334652
19	20413068	20534592	1	loss	A	-1	germline	1	5.86239180643356e-23	0
19	21560136	21563100	2	neutral	AA	10.9136	germline	1	0.558726121995225	0.762359712875347
19	21563100	21574956	3	gain	AAB	12.3115	somatic	0	0.00290163845996541	0.0056298125420885
19	21574956	21586812	2	neutral	AA	0.578485	germline	1	0.274493058828601	0.39384853021234
19	24331476	24405576	4	gain	AABB	0.304302	germline	1	9.87731125344027e-17	0
19	24414468	24420396	3	gain	AAB	6.04033	germline	1	0.0143271939641958	0.0366890367922773
19	27245088	27325116	2	neutral	AA	2.36778	somatic	0	0.00544432153351343	0.0171784557358271
19	27331044	27336972	2	neutral	AA	52.2585	germline	1	0.567969037638397	0.748718716200363
19	27336972	27339936	4	gain	AAAB	6.98592	germline	1	0.0832746790350586	0.270054447726005
19	27339936	27345864	3	gain	AAB	4.29731	germline	1	0.0202306260618528	0.0549063052867866
19	27345864	27378468	6	gain	AAAABB	0.158466	germline	1	2.03635414302248e-07	3.04799704364811e-08
19	27378468	27384396	4	gain	AAAB	2.52053	germline	1	0.0143090853658972	0.03663588164978
19	27384396	27399216	6	gain	AAAABB	0.254611	germline	1	0.000107563489142687	9.08329946699427e-05
19	27470352	27473316	1	loss	A	-1	germline	1	0.0833167920595721	0.27012757985013
19	29038308	29082768	2	neutral	AA	38.1759	somatic	0	0.57929139341024	0.572521649952507
19	29512548	29515512	1	loss	A	-1	germline	1	0.0833291388009728	0.270149017867033
19	34391292	34394256	4	gain	AABB	10.2583	germline	1	0.0832746790350586	0.270054447726005
19	38727624	38739480	2	neutral	AA	36.5504	somatic	0	0.0568389584614364	0.0738595611391551
19	41789436	41916888	2	neutral	AA	18.4221	somatic	0	0.420941563684348	0.716639128811943
19	43754568	43775316	2	neutral	AA	100	somatic	0	0.967555532267603	0.999565274665776
19	46285824	46306572	2	neutral	AA	54.5678	somatic	0	0.60037231959475	0.660466005175604
19	52842192	52851084	2	neutral	AA	13.642	germline	1	0.525726955887589	0.713705836828021
19	53876628	53894412	2	neutral	AA	23.8126	somatic	0	0.320658405259954	0.440929281221646
19	58334484	58375980	2	neutral	AA	19.9509	somatic	0	0.766424630306492	0.315385609306529
20	65208	68172	4	gain	-	-1	germline	1	0.0832746790350586	0.270054447726005
20	21305232	21308196	0	loss	-	-1	germline	1	0.0832666940277081	0.270040579470963
20	28780440	28789332	8	gain	-	-1	germline	1	0.00270039074457029	0.00495823952004926
20	28795260	28804152	3	gain	-	-1	germline	1	0.00459201587118526	0.0128179890422303
20	28804152	28872324	9	gain	-	-1	germline	1	4.59508568319755e-06	1.66374265442304e-06
20	29263572	29266536	6	gain	-	-1	germline	1	0.0832732271694046	0.270051926186418
20	29266536	29313960	3	gain	-	-1	germline	1	9.45254396109764e-11	1.79956050061492e-12
20	29408808	29411772	5	gain	-	-1	germline	1	0.0832746790350586	0.270054447726005
20	29877120	29880084	8	gain	-	-1	germline	1	0.0832717753242555	0.270049404664018
20	29886012	29894904	4	gain	-	-1	germline	1	0.00270064118188216	0.00495851963864991
20	30283188	30286152	4	gain	-	-1	germline	1	0.0832746790350586	0.270054447726005
20	31071612	31074576	34	gain	-	-1	germline	1	0.0832666940277081	0.270040579470959
20	31163496	31172388	4	gain	-	-1	germline	1	0.00270139262116115	0.00496069104971919
20	31178316	31184244	4	gain	-	-1	germline	1	0.0143096581133059	0.0366372614500384
20	31184244	31187208	26	gain	-	-1	germline	1	0.0832674199118366	0.270041840199935
20	31187208	31190172	5	gain	-	-1	germline	1	0.0832746790350586	0.270054447726005
20	31190172	31240560	3	gain	-	-1	germline	1	3.00808244004803e-05	3.32164458206607e-05
20	31240560	31243524	43	gain	-	-1	germline	1	0.0832666940277081	0.270040579470959
20	39667212	39785772	2	neutral	AA	55.9465	somatic	0	0.665325305678461	0.393434438432941
20	43769388	43772352	2	neutral	AA	100	somatic	0	0.739749618607375	0.869678721446544
20	44412576	44427396	2	neutral	AA	100	germline	1	0.396025012823663	0.424786378540244
20	45841224	45956820	2	neutral	AA	54.5678	somatic	0	0.903042619824326	0.969382567228511
20	49762596	49765560	2	neutral	AA	100	germline	1	0.110872569020878	0.315107783155343
20	55171896	55231176	2	neutral	AA	100	germline	1	0.745693534481093	0.971547801078753
20	60536736	60548592	1	loss	A	-1	germline	1	0.00124150643059774	0.00139859155780486
20	61043580	61046544	4	gain	AABB	5.27849	germline	1	0.0832754049755751	0.270055708502243
20	61372584	61378512	2	neutral	AA	14.5215	somatic	0	0.272018518009204	0.544302661709395
20	63565944	63607440	2	neutral	AA	100	germline	1	0.383699360952288	0.626879535463084
21	0	10661508	6	gain	AAAABB	-1	germline	1	4.24317862541591e-10	1.02291508596863e-11
21	10661508	10691148	5	gain	AAAAB	41.2852	germline	1	2.0365178171816e-07	3.04825534813702e-08
21	10691148	10694112	48	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	12.0596	germline	1	0.0832659681487057	0.270039318746279
21	10694112	10703004	5	gain	AAABB	6.93172	germline	1	0.00270068292349743	0.00495851963864991
21	10703004	10756356	6	gain	AAAABB	0.523748	germline	1	4.24354700278991e-10	1.02303721050134e-11
21	17982588	18003336	2	neutral	AA	37.7985	somatic	0	0.791843850983473	0.757806437749024
21	18685056	18705804	3	gain	AAB	2.40564	germline	1	4.60488511014505e-06	1.66923419653298e-06
21	26853840	26904228	2	neutral	AA	12.4521	germline	1	0.193088666788768	0.350987041327414
21	29705208	29746704	2	neutral	AA	21.9121	somatic	0	0.429555125531589	0.452466204374942
21	31782972	31785936	3	gain	AAB	10.8276	germline	1	0.08329137696394	0.270083446666516
21	34326084	34337940	2	neutral	AA	100	somatic	0	0.0015342044184406	0.00223819717714024
21	41804256	41807220	3	gain	AAA	7.08916	germline	1	0.0832797607263275	0.270063273249899
21	42518580	42554148	2	neutral	AA	100	somatic	0	0.0458279418056866	0.189992639045636
21	45307704	45313632	2	neutral	AA	21.8272	somatic	0	0.996164277264605	0.972480083790556
22	11212812	11215776	5	gain	-	-1	germline	1	0.0832746790350586	0.270054447726005
22	12691848	12694812	12	gain	AAAAAAAAABBB	100	germline	1	0.0832688716954717	0.270044361670776
22	16826628	16832556	2	neutral	AA	100	somatic	0	0.235637802980599	0.488963415760749
22	17875884	17878848	4	gain	AAAA	5.39488	germline	1	0.0832746790350586	0.270054447726005
22	22348560	22357452	2	neutral	AA	1.75546	somatic	0	0.219257485952467	0.451802395523226
22	29118336	29121300	4	gain	AAAB	100	germline	1	0.0832746790350586	0.270054447726005
22	30250584	30253548	2	neutral	AA	100	somatic	0	0.197612337239571	0.432644931242645
22	34622484	34625448	2	neutral	AA	100	somatic	0	0.950368498709842	0.951282172300366
22	34749936	34835892	2	neutral	AA	36.5315	somatic	0	0.570983506847476	0.307355273998519
22	35568000	35579856	2	neutral	AA	27.3154	somatic	0	0.11352857446534	0.267540048391001
22	39050700	39053664	2	neutral	AA	100	somatic	0	0.423137704230043	0.658848311315081
22	41380404	41433756	2	neutral	AA	100	somatic	0	0.404824892994797	0.834081499491992
22	41647164	41795364	2	neutral	AA	54.8346	somatic	0	0.160171622110751	0.164492005684685
22	43135092	43138056	2	neutral	AA	100	somatic	0	0.561083827261735	0.764012953268703
22	46087236	46090200	2	neutral	AA	100	somatic	0	0.191222302939275	0.424866648542331
22	46608900	46611864	2	neutral	AA	100	germline	1	0.320474795811004	0.565775245039019
22	46617792	46703748	2	neutral	AA	37.8518	germline	1	0.0670530926742814	0.142530972000114
22	48582924	48609600	2	neutral	AA	6.21104	somatic	0	0.836649344777108	0.956354472842269
22	49320960	49395060	2	neutral	AA	100	germline	1	0.809621251152639	0.92381693988775
22	49667748	49676640	2	neutral	AA	31.5024	somatic	0	0.0333276063625315	0.0642102143624285
22	49866336	49893012	2	neutral	AA	54.6231	somatic	0	0.865259199792457	0.775434156759273
22	50642904	50645868	4	gain	AAAA	11.4995	germline	1	0.0832746790350586	0.270054447726005
X	93540876	93546804	0	loss	-	-1	germline	1	0.0143065655175318	0.0366320874335027
X	108772872	108775836	0	loss	-	-1	germline	1	0.0832666940277081	0.270040579470963
X	137725224	137737080	2	gain	-	-1	germline	1	0.328879074250987	0.394291439075151
X	145339740	145342704	0	loss	-	-1	somatic	0	0.0832688716954717	0.270044361670781
X	155687064	155692992	0	loss	-	-1	somatic	0	0.0143119493051748	0.0366451961839153
Y	3844308	3853200	2	gain	-	-1	germline	1	0.345082675586412	0.475088287288512
Y	10098348	10130952	2	gain	AB	1.61603	somatic	0	0.0394635790338677	0.0275716279796427
Y	10655580	10658544	7	gain	-	-1	germline	1	0.0832717753242555	0.270049404664018
Y	10661508	10759320	2	gain	-	-1	germline	1	0.000855848832450666	0.00148100505125992
Y	10759320	10762284	6	gain	-	-1	germline	1	0.0832732271694046	0.270051926186418
Y	10762284	10765248	4	gain	-	-1	germline	1	0.0832746790350586	0.270054447726005
Y	10765248	10774140	2	gain	-	-1	germline	1	0.305944950409004	0.295321015796234
Y	10774140	10777104	4	gain	-	-1	germline	1	0.0832746790350586	0.270054447726005
Y	10777104	10794888	2	gain	-	-1	germline	1	0.32672083269076	0.288829983482482
Y	10794888	10797852	5	gain	-	-1	germline	1	0.0832746790350586	0.270054447726005
Y	10797852	10809708	3	gain	-	-1	germline	1	0.0637972774434738	0.0222545468794874
Y	10809708	10812672	2	gain	-	-1	germline	1	NA	NA
Y	10821564	10827492	3	gain	-	-1	germline	1	0.0143296023245252	0.0366786766056465
Y	10827492	10901592	2	gain	-	-1	germline	1	0.00026086582179863	9.20781508872981e-06
Y	10925304	10928268	4	gain	-	-1	germline	1	0.0832746790350586	0.270054447726005
Y	10934196	10937160	4	gain	-	-1	germline	1	0.0832754049755751	0.270055708502243
Y	10937160	10984584	2	gain	-	-1	germline	1	0.978919728264359	0.353147540965894
Y	10984584	10987548	4	gain	-	-1	germline	1	0.0832746790350586	0.270054447726005
Y	10987548	10990512	9	gain	-	-1	germline	1	0.0832710494093703	0.270048143909263
Y	10990512	10999404	2	gain	-	-1	germline	1	0.241274273466529	0.497221330243355
Y	10999404	11002368	5	gain	-	-1	germline	1	0.0832746790350586	0.270054447726005
Y	11014224	11017188	12	gain	-	-1	germline	1	0.0832688716954717	0.270044361670776
Y	11017188	11040900	2	gain	AA	29.2844	germline	1	0.207009591478137	0.157466719388764
Y	11289876	11307660	29	gain	AAAAAAAAAAAAAAAAAAABBBBBBBBBB	5.14698	germline	1	2.20949222878239e-05	1.22908547437461e-05
Y	11307660	11334336	16	gain	AAAAAAAAAAABBBBB	2.67302	germline	1	2.20978731841871e-05	1.22932852431035e-05
Y	11687052	11690016	3	gain	AAB	49.5102	germline	1	0.0833284124810432	0.270147756772836
Y	11690016	11692980	5	gain	AAAAB	100	germline	1	0.0832732271694046	0.270051926186418
Y	11716692	11719656	3	gain	AAA	7.91157	germline	1	0.08329137696394	0.270083446666516
Y	11719656	11725584	19	gain	AAAAAAAAAAAAABBBBBB	100	germline	1	0.0143069091101665	0.036632777265433
Y	11725584	11746332	2	gain	AA	3.38814	germline	1	0.713825680253962	0.0509240003420278
Y	11746332	11749296	8	gain	AAAAABBB	3.34881	germline	1	0.0832717753242555	0.270049404664018
Y	26637468	26640432	5	gain	AAABB	30.5909	germline	1	0.0832746790350586	0.270054447726005
Y	56825808	56837664	22	gain	AAAAAAAAAAAAAABBBBBBBB	7.45943	germline	1	0.000532080092850036	0.000671013703358092
Y	56837664	56843592	7	gain	AAAAABB	3.01081	germline	1	0.0143081690121055	0.0366345018949881
