chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	5668218	5676885	3	gain	AAB	0.595742	germline	1	0.00270262120201507	0.00496191920335676
1	16903539	16943985	3	gain	AAB	1.32631	germline	1	2.05458016108308e-07	3.12433158233816e-08
1	27171045	27298161	2	neutral	AA	24.9182	somatic	0	7.18112563886166e-05	0.000122022964617496
1	31429431	31432320	7	gain	AAAAAAA	37.1794	germline	1	0.0832751564229664	0.270055291332597
1	34636221	34644888	1	loss	A	-1	somatic	0	0.00270881131391993	0.00497220041232793
1	40110876	40122432	1	loss	A	-1	germline	1	0.000536012489955661	0.000677436486736682
1	40555782	40564449	1	loss	A	-1	somatic	0	0.00290431712462838	0.00564209367573465
1	55662363	55668141	1	loss	A	-1	somatic	0	0.0143093479575928	0.0366367826778885
1	72635238	72788355	2	neutral	AA	41.1786	somatic	0	0.845976105518095	0.757820215894068
1	73172592	73181259	2	neutral	AA	100	somatic	0	0.893956385890546	0.94314836545623
1	82082268	82258497	2	neutral	AA	17.2366	somatic	0	0.00670839576054199	0.017342565907999
1	103385754	103449312	2	neutral	AA	100	somatic	0	0.143327787615858	0.217971909991322
1	109643328	109649106	1	loss	A	-1	somatic	0	0.0143086763593464	0.0366381310203132
1	125067699	125073477	3	gain	-	-1	germline	1	0.0143356741044324	0.036693787992321
1	125079255	125082144	11	gain	-	-1	germline	1	0.0832687722397964	0.270044203438824
1	125082144	125085033	6	gain	-	-1	germline	1	0.0832758658011268	0.270056523341308
1	125151480	125163036	3	gain	-	-1	germline	1	0.000539694114099307	0.000691614516089456
1	125163036	125165925	5	gain	-	-1	germline	1	0.0832779939649783	0.270060219392055
1	150710463	150724908	2	neutral	AA	100	germline	1	0.139605586725628	0.26161399096819
1	152582535	152614314	1	loss	A	-1	germline	1	9.37111137533191e-09	5.68680103008035e-10
1	152787654	152799210	1	loss	A	-1	somatic	0	0.000544408771169962	0.000689090980784179
1	159446799	159510357	2	neutral	AA	6.92468	somatic	0	0.867900486182333	0.533683819696473
1	209903184	209911851	1	loss	A	-1	somatic	0	0.0028181430867062	0.00533571902331043
1	222201657	222207435	1	loss	A	-1	somatic	0	0.0143200973118839	0.0366583613673359
1	227569419	227609865	2	neutral	AA	12.1262	germline	1	0.151734815731681	0.326878879492751
1	228066327	228072105	1	loss	A	-1	somatic	0	0.0143418417091875	0.0367373531337282
1	234774585	234777474	3	gain	AAB	21.8331	somatic	0	0.0832957303770895	0.270091021250914
1	234777474	234783252	6	gain	AAAABB	4.44906	somatic	0	0.0143093479575928	0.0366364455990675
1	236094858	236097747	7	gain	AAAAABB	15.3429	somatic	0	0.0832751564229664	0.270055291332597
1	245270322	245302101	2	neutral	AA	36.3847	somatic	0	0.609778722319096	0.709827667971546
2	3177900	3183678	4	gain	-	-1	germline	1	0.0143131542062529	0.0366425134330483
2	19154070	19159848	2	neutral	AA	100	somatic	0	0.690570988280001	0.898911939726351
2	19960101	19997658	2	neutral	AA	55.6981	somatic	0	0.0433145859090027	0.128930275177077
2	24082704	24111594	2	neutral	AA	100	somatic	0	0.218204337304613	0.198681810820305
2	26882145	27067041	2	neutral	AA	11.8652	somatic	0	0.75585813826464	0.489714989868017
2	28525986	28557765	2	neutral	AA	54.5678	somatic	0	0.8901128469384	0.991958742532773
2	29696031	29742255	2	neutral	AA	100	somatic	0	0.188699732575571	0.218198768655272
2	30039822	30155382	2	neutral	AA	48.3716	somatic	0	0.09137878595821	0.0851283672140769
2	33203277	33209055	2	neutral	AA	100	somatic	0	0.328610523411639	0.666480746174815
2	34298208	34301097	0	loss	-	-1	somatic	0	0.0832687722397964	0.270044203438818
2	34997346	35118684	2	neutral	AA	100	somatic	0	0.161828994621477	0.38194732493064
2	47344932	47353599	2	neutral	AA	54.5678	somatic	0	0.513691388262226	0.902148505944512
2	52522020	52559577	1	loss	A	-1	germline	1	9.64269360740859e-09	6.73266997708311e-10
2	57742443	58262463	2	neutral	AA	19.9374	somatic	0	0.0718124980030468	0.0450414729842117
2	63321102	63381771	2	neutral	AA	36.5164	somatic	0	0.543587012583947	0.894311214482522
2	65383848	65395404	2	neutral	AA	100	germline	1	0.495562444804359	0.923532698909849
2	74466864	74732652	2	neutral	AA	41.8481	somatic	0	0.0833695077249927	0.234337809060204
2	89772786	89790120	5	gain	-	-1	germline	1	0.000107596911919547	9.08552236436044e-05
2	89790120	89795898	3	gain	AAA	73.8163	germline	1	0.0143529492961138	0.0367137075226547
2	89795898	89801676	5	gain	AAABB	15.4086	germline	1	0.0143110270748647	0.0366388052078084
2	89801676	89824788	4	gain	AAAA	2.06707	germline	1	4.59943859756432e-06	1.66549594859955e-06
2	89824788	89827677	9	gain	AAAAAAAAA	5.62614	germline	1	0.0832701909129032	0.270046667386499
2	89827677	89842122	32	gain	AAAAAAAAAAAAAAAAAAAAABBBBBBBBBBB	28.7197	germline	1	0.000107530833667373	9.08134364301372e-05
2	89842122	89845011	4	gain	AAAA	27.2958	germline	1	0.083287925978814	0.270077468117104
2	89845011	89850789	4	gain	AABB	35.3502	germline	1	0.0143124824504231	0.0366425134330483
2	91410849	91413738	5	gain	-	-1	germline	1	0.0832808315853121	0.270065147517158
2	108242163	108311499	2	neutral	AA	54.5678	somatic	0	0.467107097720849	0.434997589418783
2	109155087	109198422	2	neutral	AA	100	somatic	0	0.133470655311405	0.319604857042765
2	109198422	109201311	17	gain	AAAAAAAAAAAAAAAAB	29.6255	germline	1	0.0832680629105852	0.27004297147114
2	117039168	117044946	1	loss	A	-1	somatic	0	0.0149487770306286	0.0385724399625261
2	122718942	122724720	1	loss	A	-1	somatic	0	0.0143767607654753	0.0368066776533271
2	122791167	122846058	2	neutral	AA	54.5678	somatic	0	0.119669912448067	0.186812935331449
2	123626088	123637644	2	neutral	AA	100	somatic	0	0.787307245510023	0.953650843441915
2	125685945	125694612	1	loss	A	-1	somatic	0	0.00271427670144165	0.00498573272981218
2	128598057	128606724	2	neutral	AA	54.5678	somatic	0	0.379821276520571	0.600237863875811
2	129135411	129146967	2	neutral	AA	100	somatic	0	0.295834964850132	0.138776998320703
2	129239415	129256749	2	neutral	AA	100	somatic	0	0.087151094881829	0.170235520465218
2	132241086	132246864	3	gain	AAB	0.877575	somatic	0	0.0147221750827296	0.0378763217534567
2	132269976	132281532	2	neutral	AA	0.996153	somatic	0	0.620120093151932	0.697045354038465
2	146105397	146119842	1	loss	A	-1	germline	1	0.000108224986632524	9.13286903629906e-05
2	149164848	149187960	2	neutral	AA	100	germline	1	0.708456938300184	0.57755698829484
2	165349026	165372138	2	neutral	AA	100	somatic	0	0.453687722238911	0.121220092017544
2	167319324	167325102	2	neutral	AA	100	somatic	0	0.05687137987077	0.0959016470044283
2	169462962	169468740	1	loss	A	-1	somatic	0	0.0166915255889588	0.0438975884996236
2	170725455	170878572	2	neutral	AA	100	somatic	0	0.248296034255357	0.213779881290405
2	172138176	172143954	1	loss	A	-1	somatic	0	0.0143127063659429	0.0366445362397606
2	176399451	176408118	1	loss	A	-1	somatic	0	0.0027428718887847	0.00502902760542689
2	189628182	189749520	2	neutral	AA	95.5092	somatic	0	0.0670806975086295	0.0499132780722156
2	195501519	195536187	2	neutral	AA	100	somatic	0	0.406565564869712	0.578513840483545
2	197847387	197858943	2	neutral	AA	54.5681	somatic	0	0.481762975224048	0.387592014343022
2	199858131	199869687	2	neutral	AA	54.5728	somatic	0	0.751129940611249	0.902508338736015
2	203154480	203680278	2	neutral	AA	64.2151	germline	1	1.34226570815995e-15	1.71307412699662e-13
2	207485091	207496647	1	loss	A	-1	somatic	0	0.000586938740966672	0.000811919883595191
2	212318388	212327055	1	loss	A	-1	somatic	0	0.00272511433234039	0.00503194001787688
2	212743071	212800851	2	neutral	AA	100	somatic	0	0.916247421728631	0.995098081521245
2	213713775	213733998	2	neutral	AA	54.568	somatic	0	0.000949795648506805	0.00314964509799054
2	223900389	223932168	2	neutral	AA	42.3535	germline	1	0.823155596311143	0.97112514689303
2	226361817	226486044	2	neutral	AA	66.5185	somatic	0	0.583445030016037	0.66184795023649
2	229135257	229167036	2	neutral	AA	95.4102	somatic	0	0.124522236484727	0.180703637330195
2	232630947	232642503	3	gain	AAB	19.6378	somatic	0	0.000533099842988984	0.00067206201509229
2	241560846	241592625	2	neutral	AA	2.94572	germline	1	0.625527133192586	0.335659226787831
3	2784996	2836998	2	neutral	AA	29.3477	somatic	0	0.0542719131828524	0.12650520840566
3	6607143	6612921	1	loss	A	-1	somatic	0	0.0144367803742036	0.0368859488983915
3	6786261	6803595	2	neutral	AA	100	somatic	0	0.898934471804528	0.636455363112297
3	12526704	12535371	2	neutral	AA	100	somatic	0	0.0564175494467308	0.164877036248881
3	12870495	12876273	2	neutral	AA	100	somatic	0	0.739873265645078	0.658823781678472
3	29846259	29854926	2	neutral	AA	54.5678	somatic	0	0.2934304697445	0.460865864608759
3	38178135	38247471	2	neutral	AA	38.0219	somatic	0	0.563758376894537	0.834822886379059
3	41055579	41101803	2	neutral	AA	100	somatic	0	0.00115203259551867	0.00573153695198103
3	41104692	41127804	2	neutral	AA	100	germline	1	0.00853987058975938	0.0293309030000515
3	46943361	47035809	2	neutral	AA	45.7547	somatic	0	0.196642033347238	0.244203679797489
3	47662722	47682945	2	neutral	AA	100	somatic	0	0.972804584958324	0.883341712234922
3	52992927	53004483	1	loss	A	-1	germline	1	0.000534344614327319	0.000674216911494607
3	58028454	58037121	2	neutral	AA	100	somatic	0	0.0276433281708641	0.0671271186887181
3	60648777	60738336	2	neutral	AA	54.568	germline	1	0.653133799982371	0.774688866189033
3	66903462	66943908	2	neutral	AA	100	somatic	0	0.908026590548296	0.979303366417038
3	68584860	68590638	1	loss	A	-1	somatic	0	0.0143859802025795	0.0368049854507846
3	68688864	68697531	1	loss	A	-1	somatic	0	0.00281465708879434	0.00531074246185903
3	69090435	69177105	2	neutral	AA	21.4269	germline	1	0.0579165096191393	0.199746480546333
3	75712023	75865140	2	neutral	AA	0.708575	somatic	0	0.00149378187909648	0.0028332536930501
3	77780547	77786325	3	gain	AAB	1.07736	somatic	0	0.0179174113251265	0.0476761616610242
3	80010855	80016633	1	loss	A	-1	somatic	0	0.0143991437932031	0.0368957835058855
3	80250642	80325756	2	neutral	AA	100	germline	1	0.852150520952198	0.999246744526247
3	90284139	93785607	2	neutral	AA	1.445	germline	1	1.14135383334712e-12	1.22213057451859e-08
3	93785607	93797163	2	neutral	AA	9.31616	somatic	0	0.499658940073446	0.564168431119878
3	96619716	96622605	1	loss	A	-1	somatic	0	0.083274447049701	0.270054059327984
3	96645717	96665940	2	neutral	AA	100	germline	1	0.855012269533962	0.94051927327758
3	98688240	98694018	1	loss	A	-1	somatic	0	0.014369231679681	0.0368002476457328
3	99179370	99185148	1	loss	A	-1	somatic	0	0.0143496947729756	0.0367613501481904
3	105763401	105835626	2	neutral	AA	100	somatic	0	0.685996883309697	0.549118562711625
3	107797257	107823258	2	neutral	AA	56.3597	germline	1	0.209438829347749	0.562722369341775
3	128135817	128257155	2	neutral	AA	100	somatic	0	0.0397554456179352	0.0792190129165437
3	131986854	131995521	1	loss	A	-1	germline	1	0.0181478539670758	0.0484007542277458
3	132940224	132954669	2	neutral	AA	36.3818	somatic	0	0.924772805013926	0.966002749779903
3	133237791	133260903	2	neutral	AA	100	somatic	0	0.0354906570379564	0.0417080604758174
3	137955528	138053754	2	neutral	AA	28.0635	germline	1	0.0362013274904577	0.084903230766973
3	139114017	139116906	1	loss	A	-1	somatic	0	0.0832709002567988	0.270047899366485
3	142052130	142193691	2	neutral	AA	100	somatic	0	0.9203624612387	0.987638817506099
3	143447517	143453295	1	loss	A	-1	somatic	0	0.0173241910304238	0.0458277566804393
3	146111175	146125620	2	neutral	AA	100	germline	1	0.754733726479101	0.72580119813011
3	146249847	146322072	2	neutral	AA	100	somatic	0	0.685650543256599	0.812913189252008
3	146665863	146674530	1	loss	A	-1	germline	1	0.014382156876525	0.0368104007384996
3	162806706	162826929	1	loss	A	-1	germline	1	4.66310308035384e-06	1.71692834904924e-06
3	164190537	164196315	2	neutral	AA	100	somatic	0	0.531811934873547	0.885189683821411
3	175451859	175477860	2	neutral	AA	37.0648	somatic	0	0.147571401615226	0.173361990640758
3	177748614	177760170	2	neutral	AA	54.5678	germline	1	0.795500301469354	0.725880042453249
3	180805176	180851400	2	neutral	AA	54.7239	somatic	0	0.736324264088222	0.93525251827266
4	127116	132894	1	loss	A	-1	somatic	0	0.0143473384556828	0.0367126944369358
4	554688	557577	4	gain	AAAB	36.7347	somatic	0	0.083286507060951	0.270075003964293
4	6896043	6898932	0	loss	-	-1	somatic	0	0.0832659349523205	0.2700392755927
4	7863858	7866747	4	gain	AABB	6.77035	somatic	0	0.083282959851962	0.270068843654063
4	9626148	9877491	2	neutral	AA	4.95523	somatic	0	0.0177625065768852	0.0527243229717326
4	10209726	10232838	1	loss	A	-1	germline	1	9.80478848145038e-07	2.32577855752147e-07
4	12012462	12029796	2	neutral	AA	36.3845	somatic	0	0.83070624413285	0.899064754517776
4	18590715	18631161	2	neutral	AA	100	somatic	0	0.177169126477539	0.237495706538308
4	20887470	20904804	1	loss	A	-1	germline	1	2.22210700730683e-05	1.23687249820037e-05
4	28499985	28511541	2	neutral	AA	27.294	somatic	0	0.647402360057106	0.974087386411477
4	29667141	29672919	2	neutral	AA	100	germline	1	0.194142220292761	0.22009619908786
4	30738960	30747627	2	neutral	AA	100	somatic	0	0.0278348467533382	0.076539352777838
4	33275502	33295725	2	neutral	AA	100	somatic	0	0.927879786808896	0.893687317358581
4	39027501	39053502	2	neutral	AA	54.8597	somatic	0	0.178609764455479	0.33713875102618
4	40292883	40295772	5	gain	AAABB	8.11375	germline	1	0.0832808315853121	0.270065147517158
4	42277626	42294960	2	neutral	AA	100	somatic	0	0.304412298455228	0.339619606232666
4	49653243	49656132	17	gain	AAAAAAAAAAAAAAAAA	16.2501	somatic	0	0.0832680629105852	0.27004297147114
4	57184866	57233979	3	gain	AAB	2.18478	germline	1	4.30089947525132e-12	2.57571741713036e-14
4	57233979	57236868	2	neutral	AA	100	somatic	0	0.101875548467103	0.301002151523323
4	57704886	57788667	2	neutral	AA	100	somatic	0	0.0613759546904308	0.136113127250399
4	60654555	60660333	2	neutral	AA	100	somatic	0	0.155224577139481	0.195920859445714
4	61466364	61495254	2	neutral	AA	42.1096	somatic	0	0.131901029791907	0.266029684458838
4	68518413	68622417	1	loss	A	-1	germline	1	2.21430754451964e-17	0
4	70618716	70624494	1	loss	A	-1	somatic	0	0.0144040969514339	0.0368693370133413
4	71115624	71124291	2	neutral	AA	100	somatic	0	0.838447248054951	0.835844413433637
4	76960071	76983183	2	neutral	AA	100	somatic	0	0.0179240482357433	0.0458117472248037
4	79719066	79837515	2	neutral	AA	84.4428	germline	1	0.0859619572860532	0.129232562230632
4	83044305	83061639	2	neutral	AA	10.9137	somatic	0	0.185222535252566	0.268865645215431
4	83885004	83916783	2	neutral	AA	100	somatic	0	0.944742839739095	0.747788763657508
4	87074460	87230466	2	neutral	AA	100	somatic	0	0.803848314607321	0.927349378993989
4	105520725	105529392	2	neutral	AA	100	somatic	0	0.509427894163854	0.545381086542874
4	114254172	114259950	1	loss	A	-1	somatic	0	0.014342178191297	0.0367147206328282
4	116322696	116348697	2	neutral	AA	100	somatic	0	0.471915992759747	0.818253022949628
4	116412255	116487369	1	loss	A	-1	germline	1	2.21951515429266e-17	0
4	125053254	125076366	2	neutral	AA	61.9012	somatic	0	0.733297243407747	0.563692952884307
4	126012402	126130851	2	neutral	AA	36.4385	germline	1	0.0253689447801757	0.0462258229832461
4	129144078	129149856	1	loss	A	-1	somatic	0	0.0145254659410758	0.0372910531603562
4	144643563	144946908	2	neutral	AA	100	somatic	0	0.764191725079163	0.849450179746857
4	146004282	146007171	0	loss	-	-1	somatic	0	0.0832687722397964	0.270044203438818
4	156037779	156046446	1	loss	A	-1	somatic	0	0.00271124595494269	0.00497473944442994
4	156580911	156647358	2	neutral	AA	100	somatic	0	0.125214287719391	0.175098808856401
4	157661397	157776957	2	neutral	AA	100	somatic	0	0.880715317601866	0.76181149803665
4	168850494	168856272	2	neutral	AA	100	somatic	0	0.183507923355863	0.418365764212503
4	170037873	170055207	2	neutral	AA	65.1446	somatic	0	0.662695784787934	0.557218087458178
4	184130415	184156416	2	neutral	AA	29.0661	somatic	0	0.399919690596651	0.244243007510761
4	184277754	184292199	2	neutral	AA	100	somatic	0	0.158582220822663	0.226835435847789
4	186820074	186909633	2	neutral	AA	61.646	somatic	0	0.134519342706023	0.543257670201038
4	187851447	187894782	2	neutral	AA	100	germline	1	0.426962673032064	0.850801192205175
5	756918	762696	4	gain	-	-1	germline	1	0.0143114748688239	0.0366398165094007
5	12809826	12821382	1	loss	A	-1	germline	1	0.0143094598933373	0.0366398165093992
5	45004842	45013509	1	loss	A	-1	somatic	0	0.00271239236005734	0.0049793401759034
5	45371745	45377523	1	loss	A	-1	somatic	0	0.0143156175489166	0.0366583613673359
5	46270224	46276002	0	loss	-	-1	germline	1	0.0143061021569817	0.0366313897423343
5	46406007	46411785	1	loss	A	-1	somatic	0	0.0143827190741437	0.0368615418549658
5	49656132	49659021	217	gain	-	-1	germline	1	0.0832652256426884	0.270038043641433
5	84650589	84659256	1	loss	A	-1	germline	1	0.014323457945567	0.0366836630443185
5	86918454	86924232	1	loss	A	-1	somatic	0	0.0143838435275302	0.0368656087142315
5	88082721	88085610	0	loss	-	-1	somatic	0	0.0832659349523205	0.2700392755927
5	137516400	137522178	1	loss	A	-1	somatic	0	0.0143766483654862	0.0367654073360354
5	140844528	140858973	1	loss	A	-1	somatic	0	0.000534617639869298	0.00067497389589144
5	146073618	146088063	2	neutral	AA	54.5678	somatic	0	0.634689413155199	0.708679985316838
5	146226735	146287404	2	neutral	AA	36.3815	somatic	0	0.487670198589508	0.586444656024051
5	150470676	150508233	2	neutral	AA	54.8528	somatic	0	0.776557219419997	0.831952767467903
5	150915582	150990696	2	neutral	AA	72.2715	somatic	0	0.00060520358089467	0.00106167219802333
5	153374121	153379899	2	neutral	AA	50.2742	somatic	0	0.982010126194271	0.99696079350198
5	157072041	157077819	2	neutral	AA	100	somatic	0	0.819478487598221	0.785934494309536
5	157496724	157693176	2	neutral	AA	100	germline	1	0.651957157690158	0.547909259142496
5	158819886	158834331	2	neutral	AA	95.2579	somatic	0	0.982166405196116	0.990355198288707
5	160082379	160166160	2	neutral	AA	54.5678	germline	1	0.000460253308896437	0.00315825827797389
5	160212384	160322166	2	neutral	AA	53.4297	somatic	0	0.00243657862912881	0.000642795582991185
5	160905744	160908633	2	neutral	AA	100	somatic	0	0.831605627873388	0.910956907391434
5	172791090	172805535	2	neutral	AA	100	somatic	0	0.0428817120513632	0.0807464880209653
5	175489416	175503861	2	neutral	AA	100	somatic	0	0.44907969393741	0.857644096800721
5	178583535	178586424	4	gain	AAAA	23.7267	somatic	0	0.0832900543923246	0.270081164377092
5	179080443	179100666	2	neutral	AA	37.0703	somatic	0	0.917242074864981	0.991672114215128
5	180949626	181001628	1	loss	A	-1	germline	1	2.05768664770072e-13	4.44089209850063e-16
5	181044963	181047852	4	gain	AABB	13.8436	somatic	0	0.0832886354450888	0.270078700199664
6	257121	381348	4	gain	-	-1	germline	1	6.39427279329367e-28	0
6	32486805	32527251	0	loss	-	-1	germline	1	4.32169310786725e-08	4.12382472614325e-09
6	32527251	32605254	1	loss	A	-1	somatic	0	3.98264943322162e-07	2.07550647779442e-07
6	35786043	35800488	4	gain	-	-1	germline	1	0.000107703189383904	9.0995343943856e-05
6	54064746	54070524	1	loss	A	-1	somatic	0	0.0143350014163773	0.0366853503658917
6	60229872	60238539	3	gain	-	-1	somatic	0	0.00270556142385204	0.00496548114694573
6	60238539	60241428	4	gain	-	-1	somatic	0	0.083282959851962	0.270068843654063
6	61411473	61420140	1	loss	A	-1	somatic	0	0.00271147110671485	0.00498559517642583
6	73883286	73891953	1	loss	A	-1	somatic	0	0.00271161439401017	0.00497494536397503
6	76728951	76743396	1	loss	A	-1	germline	1	0.000534550360641742	0.000674849745511685
6	78257232	78326568	1	loss	A	-1	germline	1	2.21650690713891e-17	0
6	97102179	97139736	2	neutral	AA	100	germline	1	0.025249040021317	0.0221706030123502
6	97252407	97304409	2	neutral	AA	100	somatic	0	0.294335518133138	0.325227116648113
6	97336188	97526862	2	neutral	AA	15.6709	somatic	0	0.623495183059509	0.80313897091311
6	103145967	103261527	2	neutral	AA	100	somatic	0	0.132639915454175	0.247519577629623
6	103761324	103810437	2	neutral	AA	36.4116	somatic	0	0.243517577654281	0.492348636745217
6	104812920	104815809	1	loss	A	-1	somatic	0	0.0833283733702748	0.270147703371099
6	110073789	110094012	1	loss	A	-1	germline	1	4.65277458855121e-06	1.69344715017505e-06
6	112942566	113052348	2	neutral	AA	22.1026	somatic	0	0.101528163645274	0.182614020127882
6	114615297	114618186	2	neutral	AA	100	somatic	0	0.690467047826903	0.843917309084964
6	120280626	120384630	2	neutral	AA	33.2648	somatic	0	0.0363379198273754	0.0584198229773266
6	121155993	121205106	2	neutral	AA	100	somatic	0	0.354742909537981	0.433022397350433
6	121222440	121225329	2	neutral	AA	100	somatic	0	0.115737147182447	0.322540830535174
6	127072665	127118889	2	neutral	AA	54.5873	somatic	0	0.894527835336817	0.334265639287478
6	135580770	135586548	2	neutral	AA	100	somatic	0	0.678951250979982	0.544864867681857
6	137048382	137051271	2	neutral	AA	100	somatic	0	0.472730757692486	0.699139503654326
6	138567996	138582441	2	neutral	AA	39.272	somatic	0	0.514792227863527	0.817321127757802
6	150384006	150389784	2	neutral	AA	100	somatic	0	0.483960039849676	0.635113080264626
6	150762465	150782688	2	neutral	AA	54.5678	somatic	0	0.137817200393624	0.438186826034676
6	153420345	153752580	2	neutral	AA	0.367055	germline	1	0.000220109638395225	0.000656471394867686
6	155737323	155766213	2	neutral	AA	48.8075	germline	1	0.08145439983236	0.215078647683214
6	157222269	157225158	2	neutral	AA	100	somatic	0	0.79259502816371	0.894518946412758
6	157311828	157314717	8	gain	AAAAABBB	1.3196	germline	1	0.083274447049701	0.270054059327989
6	157395609	157415832	2	neutral	AA	55.5122	somatic	0	0.491412462905649	0.393554454994943
6	160573509	160671735	2	neutral	AA	4.38921	somatic	0	0.542725351271897	0.840551631910082
6	164462103	164508327	2	neutral	AA	45.6738	somatic	0	0.359128755899624	0.60861427738205
6	167512887	167515776	1	loss	A	-1	somatic	0	0.0849326868579959	0.272922110804039
6	168714711	168732045	2	neutral	AA	15.3697	somatic	0	0.126263365042897	0.103406364720897
6	170144766	170147655	4	gain	AAAB	37.6238	somatic	0	0.0832857976093625	0.270073771894041
7	9761931	9764820	0	loss	-	-1	somatic	0	0.0832659349523205	0.2700392755927
7	10833750	10839528	2	neutral	AA	36.4099	somatic	0	0.305750639516507	0.552213115395044
7	22776876	22782654	2	neutral	AA	100	somatic	0	0.966929712443702	0.718105847999378
7	36228060	36236727	2	neutral	AA	27.2846	somatic	0	0.244848518197974	0.368584382856213
7	37288323	37305657	2	neutral	AA	100	somatic	0	0.427073407069091	0.641605552731146
7	43540119	43623900	2	neutral	AA	100	somatic	0	0.443943193277989	0.567392547705135
7	50782842	50788620	2	neutral	AA	100	somatic	0	0.27457293111697	0.30583289377513
7	55945485	56127492	2	neutral	AA	1.64741	somatic	0	3.94934097439334e-09	1.72228361006166e-06
7	56367279	56370168	0	loss	-	-1	somatic	0	0.0832687722397964	0.270044203438818
7	57485322	57496878	3	gain	AAB	1.88027	somatic	0	0.000896478408698338	0.00237421096268309
7	57884004	57930228	2	neutral	AA	11.8687	somatic	0	0.136147431095823	0.248801966219517
7	57930228	57938895	3	gain	AAA	13.5538	somatic	0	0.00270523458826207	0.0049689768681227
7	57938895	57982230	2	neutral	AA	2.1588	somatic	0	0.00124923582695693	0.00116525469101114
7	61044570	61056126	3	gain	-	-1	somatic	0	0.000532685520011774	0.000671579907680409
7	62298396	62359065	3	gain	AAB	0.390734	germline	1	3.29108619203378e-10	1.16468057420605e-10
7	62402400	62405289	5	gain	-	-1	germline	1	0.0832808315853121	0.270065147517158
7	62442846	62454402	3	gain	AAB	5.129	germline	1	0.000564048846809155	0.000762502248149444
7	64858050	65224953	2	neutral	AA	10.3606	somatic	0	0.264276760000584	0.398829021462512
7	65320290	65456073	2	neutral	AA	13.9432	germline	1	0.663042831971049	0.395958713992111
7	65796975	65822976	3	gain	AAB	0.203389	germline	1	2.05131235530887e-07	3.0727834832156e-08
7	70832502	70890282	2	neutral	AA	40.4877	germline	1	0.0427620109274969	0.066749232935405
7	84263463	84705480	2	neutral	AA	16.4028	somatic	0	0.0357758081656899	0.110249871586219
7	85055049	85083939	2	neutral	AA	100	somatic	0	0.765544117143114	0.967046860194547
7	85624182	85681962	2	neutral	AA	100	somatic	0	0.219332641916204	0.565239150297161
7	88033608	88053831	2	neutral	AA	100	somatic	0	0.468583940270251	0.867876371016073
7	91445517	91457073	2	neutral	AA	100	somatic	0	0.930809722499406	0.997330986029289
7	94302738	94308516	2	neutral	AA	54.5678	somatic	0	0.595819981517449	0.862569050758425
7	95293665	95296554	2	neutral	AA	100	somatic	0	0.711875501807203	0.855435413381541
7	97766649	97772427	1	loss	A	-1	somatic	0	0.0143444215833189	0.0367076293752011
7	98439786	98442675	2	neutral	AA	100	somatic	0	0.202025982088374	0.437968010092412
7	100129851	100164519	2	neutral	AA	54.568	somatic	0	0.0615009734255452	0.188259520751172
7	100947438	100956105	3	gain	AAB	1.90499	germline	1	0.002711450637666	0.00498965446392374
7	100956105	100958994	12	gain	AAAAAAAAAAAB	8.92885	germline	1	0.0832687722397964	0.270044203438824
7	100958994	100976328	3	gain	AAB	0.925565	germline	1	2.216492848426e-05	1.23663359744564e-05
7	101825694	102074148	2	neutral	AA	46.0834	somatic	0	0.000246556812871777	0.00123673923575629
7	105956964	105977187	2	neutral	AA	100	somatic	0	0.607755248226786	0.88766308643915
7	109802223	109813779	1	loss	A	-1	germline	1	0.000534059856630277	0.000673646597252331
7	114927309	114935976	2	neutral	AA	43.1938	somatic	0	0.285563281114551	0.389623188939672
7	124859691	124957917	2	neutral	AA	100	germline	1	0.408787972697974	0.833281618910282
7	130207230	130276566	2	neutral	AA	100	somatic	0	0.483135781926785	0.0848071327907399
7	134098713	134113158	1	loss	A	-1	germline	1	0.000108337393067441	9.20580990364517e-05
7	139778487	139839156	2	neutral	AA	100	somatic	0	0.397739041001908	0.494980044517747
7	143846199	143849088	5	gain	AAAAB	21.1307	germline	1	0.0832779939649783	0.270060219392055
7	146327850	146333628	2	neutral	AA	54.568	somatic	0	0.698524525718634	0.945971984427468
7	148838391	148881726	2	neutral	AA	36.3789	somatic	0	0.658563127977796	0.915516495317976
7	150424452	150433119	2	neutral	AA	100	somatic	0	0.987891018984453	0.639462591705132
7	152400528	152409195	7	gain	AAAAAAB	2.05019	germline	1	0.00270054031169713	0.00495856490004498
7	155662209	155676654	2	neutral	AA	21.8348	somatic	0	0.0131181411745102	0.0125933011157966
7	158218974	158253642	2	neutral	AA	43.8749	somatic	0	0.0646823605503693	0.124290031191325
8	222453	225342	2	neutral	AA	100	somatic	0	0.155440102929036	0.378964184797956
8	644247	650025	0	loss	-	-1	somatic	0	0.014306325984447	0.0366320638212925
8	6110235	6116013	1	loss	A	-1	somatic	0	0.0143610323064762	0.0367924652670979
8	11385549	11391327	1	loss	A	-1	somatic	0	0.0151443460423876	0.039145210254424
8	16343073	16351740	1	loss	A	-1	somatic	0	0.00273745715434575	0.0050408949521612
8	19162737	19168515	2	neutral	AA	100	germline	1	0.910984856855215	0.896260641433419
8	23721579	23750469	2	neutral	AA	100	germline	1	0.427964080821775	0.358026865895297
8	24357159	24368715	2	neutral	AA	100	somatic	0	0.276258832604713	0.440526606596628
8	28384425	28387314	1	loss	A	-1	somatic	0	0.0847526456807474	0.272611858139582
8	29947374	29990709	2	neutral	AA	22.7559	somatic	0	0.520978460672862	0.645338421570532
8	32821929	32824818	0	loss	-	-1	germline	1	0.0832659349523205	0.2700392755927
8	37060092	37120761	2	neutral	AA	36.4697	somatic	0	0.670987387670745	0.968526693474801
8	39374181	39527298	1	loss	A	-1	germline	1	8.37360807034596e-34	0
8	40916907	40922685	1	loss	A	-1	somatic	0	0.0143682205749515	0.0367610120668842
8	43236774	43242552	7	gain	AAAAABB	5.24661	germline	1	0.0143092360226207	0.0366361085229586
8	48451419	48477420	2	neutral	AA	100	somatic	0	0.990310167638506	0.859452191012557
8	54864999	54876555	2	neutral	AA	100	somatic	0	0.155612411583557	0.506177297241235
8	60677667	60680556	1	loss	A	-1	somatic	0	0.0833226955837426	0.270137844987429
8	62122167	62127945	1	loss	A	-1	somatic	0	0.014372040633221	0.0367420838543969
8	64332252	64343808	1	loss	A	-1	germline	1	0.000535370121255477	0.000675147742394189
8	65973204	66004983	2	neutral	AA	100	somatic	0	0.652861550150521	0.613396939762092
8	74449530	74455308	1	loss	A	-1	somatic	0	0.0144728641930958	0.0369164775806216
8	91907757	91945314	2	neutral	AA	54.5678	germline	1	0.0534975540974675	0.0307117938354943
8	95085657	95097213	2	neutral	AA	100	somatic	0	0.350387672896408	0.394848054358839
8	101609019	101614797	1	loss	A	-1	germline	1	0.0143850805158094	0.0367819782521802
8	110836485	110853819	1	loss	A	-1	germline	1	2.25326841006336e-05	1.28346408123647e-05
8	115736229	115808454	2	neutral	AA	29.3755	germline	1	0.318612772914087	0.5867557286981
8	120069729	120162177	2	neutral	AA	13.7259	somatic	0	0.164793461261167	0.167170181104981
8	120451077	120459744	2	neutral	AA	54.5681	somatic	0	0.334904574082623	0.734246398247508
8	121664457	121820463	2	neutral	AA	54.5987	germline	1	0.021446370034453	0.0653143314384541
8	126477531	126491976	2	neutral	AA	54.5678	germline	1	0.955836131157127	0.99040025045765
8	144123543	144126432	5	gain	AAAAB	30.7263	germline	1	0.0832765751841822	0.270057755354121
8	144126432	144158211	2	neutral	AA	43.3967	germline	1	0.0594670551094212	0.221883479407319
9	23363343	23377788	1	loss	A	-1	germline	1	0.000108221030665722	9.14737107869934e-05
9	40867794	40911129	5	gain	-	-1	germline	1	0.000532330624869118	0.000671221627755236
9	40911129	40916907	7	gain	-	-1	germline	1	0.0143092360226207	0.0366361085229586
9	40922685	40925574	6	gain	-	-1	germline	1	0.0832758658011268	0.270056523341308
9	40925574	40928463	7	gain	-	-1	germline	1	0.0832751564229664	0.270055291332597
9	69122214	69125103	1	loss	A	-1	germline	1	0.0832694815739023	0.270045435410605
9	73383489	73432602	2	neutral	AA	100	somatic	0	0.0181733813419908	0.024287617137369
9	74045070	74094183	2	neutral	AA	21.2003	somatic	0	0.606064618641367	0.645045425981305
9	76913847	76928292	2	neutral	AA	100	germline	1	0.0863275112042343	0.112468091176563
9	84373245	84477249	2	neutral	AA	53.358	somatic	0	0.564594216368043	0.749491710226941
9	84997269	85031937	2	neutral	AA	30.7554	somatic	0	0.26489718218807	0.669565010949976
9	91685304	91714194	2	neutral	AA	42.4792	somatic	0	0.119715348918744	0.322280644349509
9	95738571	95764572	2	neutral	AA	100	somatic	0	0.375532520148246	0.940138078272495
9	103013073	103015962	0	loss	-	-1	somatic	0	0.0832680629105852	0.270042971471135
9	104307345	104399793	2	neutral	AA	54.6548	somatic	0	0.116463340983356	0.0559449545178325
9	109865781	109914894	2	neutral	AA	100	somatic	0	0.183913886557005	0.173690782423007
9	121993803	122005359	1	loss	A	-1	somatic	0	0.000540021619417658	0.000687965159788639
9	122900949	122944284	2	neutral	AA	27.9056	somatic	0	0.685512049023923	0.223836269323187
9	126240633	126272412	2	neutral	AA	100	somatic	0	0.00194937337104369	0.000301639234131068
9	128673171	128676060	2	neutral	AA	100	somatic	0	0.389258105954648	0.629633492791505
9	129424311	129441645	3	gain	AAB	0.507898	germline	1	2.24764446691796e-05	1.29732684762685e-05
9	131325273	131331051	2	neutral	AA	54.5678	somatic	0	0.303941530170577	0.534955761244575
9	133783812	133786701	2	neutral	AA	100	somatic	0	0.0893611363981741	0.280471904087957
9	134789184	134794962	2	neutral	AA	36.386	somatic	0	0.286752723661368	0.772239527564917
9	137325726	137328615	5	gain	AAABB	16.1004	germline	1	0.0832801221728859	0.270063915479728
9	137354616	137357505	3	gain	AAB	17.7086	somatic	0	0.0833106313278611	0.270116896794001
9	137357505	137363283	1	loss	A	-1	somatic	0	0.0143494703470994	0.0367420838543969
9	137715741	137718630	3	gain	AAB	29.8019	somatic	0	0.0833099217098169	0.270115664584255
10	4665735	4668624	1	loss	A	-1	somatic	0	0.0832723189592749	0.270050363338776
10	6835374	6838263	1	loss	A	-1	somatic	0	0.0832815410026335	0.270066379558684
10	9877491	10033497	2	neutral	AA	52.9157	somatic	0	0.159427021043724	0.258140951472949
10	20561013	20566791	1	loss	A	-1	somatic	0	0.0143518269732185	0.0367326229459426
10	26570133	26679915	2	neutral	AA	0.4726	somatic	0	0.423137093787616	0.810995725300093
10	30958524	30964302	1	loss	A	-1	somatic	0	0.0145071013319438	0.0372147797478403
10	38484369	38519037	3	gain	AAB	0.626685	germline	1	5.70184465347159e-08	4.94480145718512e-09
10	39247065	39267288	1	loss	A	-1	germline	1	0.00295733689315994	0.00990922055013999
10	39330846	39351069	1	loss	A	-1	germline	1	0.000606620485628928	0.00340399401281088
10	41858721	41878944	24	gain	AAAAAAAAAAAAAAAABBBBBBBB	4.5889	germline	1	0.0027000916841997	0.00495788060378521
10	41881833	41890500	60	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBBBB	92.0642	germline	1	0.0143064378993381	0.036632063821294
10	42312294	42320961	3	gain	AAA	11.1103	germline	1	0.00271679785250782	0.00499640370467136
10	42583860	42630084	2	neutral	AA	5.59228	somatic	0	0.229738509702543	0.0760112808362854
10	46059327	46174887	2	neutral	AA	22.2752	somatic	0	0.51484491802497	0.774810432864023
10	46328004	46556235	4	gain	AAAB	0.805193	somatic	0	1.5539048884896e-10	6.56064091941744e-11
10	46556235	46559124	4	gain	AAAB	7.8102	germline	1	0.083287925978814	0.270077468117104
10	53016039	53030484	1	loss	A	-1	germline	1	0.00093336097149886	0.0028499260259659
10	55422576	55610361	2	neutral	AA	36.3795	germline	1	0.828082403406339	0.90895018969911
10	57167532	57181977	2	neutral	AA	1.43782	somatic	0	0.61006491052382	0.530612776060773
10	59680962	59883192	2	neutral	AA	10.2788	germline	1	0.0577041083352367	0.125512512616941
10	69052878	69101991	2	neutral	AA	100	somatic	0	0.00619209382542996	0.00577541389500291
10	76362048	76494942	2	neutral	AA	35.1039	somatic	0	0.154252066799452	0.21929828381737
10	76494942	76497831	0	loss	-	-1	germline	1	0.0832680629105852	0.270042971471135
10	86193315	86201982	1	loss	A	-1	somatic	0	0.00276800603292517	0.005164964681035
10	98930916	98936694	1	loss	A	-1	somatic	0	0.0143293967652855	0.0366802886048662
10	100675872	100748097	2	neutral	AA	54.5785	somatic	0	0.822855127190009	0.719557285208221
10	114586407	114603741	2	neutral	AA	54.5678	somatic	0	0.16068244460508	0.0812491699541125
10	116906274	116995833	2	neutral	AA	100	somatic	0	0.0655906772981901	0.0768698663942414
10	120182400	120191067	2	neutral	AA	100	somatic	0	0.112045840002067	0.0880096666800888
10	120465522	120471300	1	loss	A	-1	somatic	0	0.0143842933305946	0.0368324075129833
10	122586048	122591826	1	loss	A	-1	somatic	0	0.0143737262378078	0.0367539129877547
10	127711134	127742913	2	neutral	AA	13.3957	germline	1	0.617846980274271	0.948303214325874
10	128462274	128465163	6	gain	AAABBB	7.53748	germline	1	0.0832758658011268	0.270056523341308
10	131189490	131192379	1	loss	A	-1	somatic	0	0.0832709002567988	0.270047899366485
10	131622840	131625729	1	loss	A	-1	somatic	0	0.0832801221728859	0.270063915479722
10	132362424	132365313	4	gain	AABB	100	somatic	0	0.0832886354450888	0.270078700199664
10	133110675	133113564	4	gain	AAAB	66.4963	germline	1	0.0832886354450888	0.270078700199664
10	133315794	133318683	1	loss	A	-1	somatic	0	0.0832794127653548	0.270062683446395
10	133538247	133622028	3	gain	AAB	0.330155	germline	1	4.55320185998235e-16	0
10	133622028	133797422	3	gain	AAB	-1	somatic	0	NA	NA
11	3654585	3657474	4	gain	-	-1	germline	1	0.0832914733591423	0.27008362857093
11	5737554	5743332	1	loss	A	-1	somatic	0	0.0163605314115934	0.042871824172149
11	18922950	18940284	1	loss	A	-1	germline	1	2.22545941585591e-05	1.23902459620018e-05
11	24261822	24267600	1	loss	A	-1	somatic	0	0.0144943035742713	0.0370674094245395
11	28985337	28988226	0	loss	-	-1	germline	1	0.0832659349523205	0.2700392755927
11	50176152	50179041	1	loss	A	-1	somatic	0	0.0832751564229664	0.270055291332592
11	54755217	54778329	1	loss	A	-1	germline	1	4.76918077149855e-06	1.88607426099274e-06
11	54928557	54937224	3	gain	AAB	5.85943	somatic	0	0.00270478524823203	0.00496356288618149
11	55116342	55122120	1	loss	A	-1	somatic	0	0.0144329451432554	0.0369534807972791
11	63425106	63430884	3	gain	AAB	6.96306	somatic	0	0.014317409305738	0.0366526284436556
11	69798240	69815574	2	neutral	AA	21.8271	somatic	0	0.648193786219277	0.745286553504477
11	71933211	71947656	2	neutral	AA	100	somatic	0	0.364318980695629	0.350892594942502
11	72063216	72080550	2	neutral	AA	100	somatic	0	0.0328176092370041	0.0525289983216336
11	83937006	84142125	2	neutral	AA	100	somatic	0	0.963519324075471	0.900660738795626
11	85785966	86343543	2	neutral	AA	19.9273	somatic	0	0.744579073536027	0.951411931988821
11	89229654	89235432	1	loss	A	-1	somatic	0	0.0143541839407114	0.0367735228869144
11	96561936	96567714	0	loss	-	-1	somatic	0	0.0143105792932651	0.0366448733837115
11	102802176	102903291	2	neutral	AA	100	germline	1	0.181020145305036	0.0848869975251122
11	103099743	103145967	2	neutral	AA	54.5681	somatic	0	0.836887606139324	0.401099448591368
11	104396904	104402682	1	loss	A	-1	somatic	0	0.0143327593239448	0.0366813009081853
11	106916112	106919001	0	loss	-	-1	germline	1	0.0832652256426884	0.270038043641427
11	113999940	114046164	2	neutral	AA	100	somatic	0	0.695435995181691	0.448896086992154
11	117923202	117928980	2	neutral	AA	21.8271	somatic	0	0.903564822772681	0.923221021711162
11	122106474	122144031	2	neutral	AA	100	somatic	0	0.0623703795794283	0.141131837568406
11	123198516	123204294	2	neutral	AA	100	germline	1	0.774742654780725	0.880828594196951
11	123475860	123481638	2	neutral	AA	83.4232	somatic	0	0.0627097037433163	0.185809942285774
11	128456496	128462274	2	neutral	AA	100	germline	1	0.405607154473306	0.349216914777036
11	131264604	131267493	1	loss	A	-1	somatic	0	0.0832758658011268	0.270056523341302
11	132053301	132061968	3	gain	AAB	6.09008	somatic	0	0.00286753512300424	0.00551539878075724
12	2253420	2256309	5	gain	-	-1	germline	1	0.0832765751841822	0.270057755354121
12	11385549	11391327	3	gain	-	-1	somatic	0	0.0143196492799479	0.0366570123735414
12	37276767	37285434	3	gain	-	-1	somatic	0	0.00270566356737305	0.0049682912548531
12	37617669	37623447	1	loss	A	-1	somatic	0	0.0143453190267908	0.03673600159713
12	37718784	37724562	4	gain	AAAA	6.2616	germline	1	0.0143122585379935	0.0366425134330483
12	37724562	37741896	2	neutral	AA	3.28505	germline	1	0.0077423136248097	0.0399432589299126
12	41197140	41200029	2	neutral	AA	100	somatic	0	0.103123092760062	0.302982945081957
12	42081174	42089841	2	neutral	AA	1.22581	somatic	0	0.578296723973999	0.69511645196891
12	45507528	45516195	1	loss	A	-1	somatic	0	0.00280500379591927	0.00529662210526871
12	48566979	48639204	2	neutral	AA	65.8507	somatic	0	0.284547990868471	0.591358166320604
12	51083298	51089076	1	loss	A	-1	somatic	0	0.0144159230603455	0.0369124058131238
12	52637580	52640469	2	neutral	AA	100	somatic	0	0.175168534852079	0.404750910275331
12	55905039	55910817	2	neutral	AA	100	somatic	0	0.293748434352496	0.708257848944072
12	57164643	57193533	2	neutral	AA	26.8154	somatic	0	0.69384573522874	0.840276698540345
12	59302503	59351616	2	neutral	AA	100	somatic	0	0.786914628529392	0.638262875515527
12	63104427	63107316	2	neutral	AA	100	somatic	0	0.363840248993216	0.606801415736908
12	66160989	66175434	2	neutral	AA	100	somatic	0	0.405783542262645	0.505097058159242
12	67923279	67957947	2	neutral	AA	100	somatic	0	0.00379230714849239	0.00702176169304669
12	70477155	70485822	1	loss	A	-1	germline	1	0.0143217775417744	0.0366597104045659
12	71208072	71210961	0	loss	-	-1	somatic	0	0.0832680629105852	0.270042971471135
12	80871777	80909334	2	neutral	AA	93.1836	somatic	0	0.737731917292166	0.592501928425639
12	82374057	82397169	2	neutral	AA	54.8373	somatic	0	0.831670823424103	0.958437312424806
12	83769444	83934117	2	neutral	AA	100	germline	1	0.182394052630893	0.501714624645776
12	86303097	86308875	1	loss	A	-1	somatic	0	0.0143250264793518	0.0366630831876716
12	90090576	90096354	1	loss	A	-1	somatic	0	0.0143200973118839	0.0366657816096259
12	95634567	95706792	2	neutral	AA	38.9408	somatic	0	0.028530781272149	0.0583876693867471
12	95706792	95917689	2	neutral	AA	100	somatic	0	0.934084249657269	0.810014309880199
12	97373745	97382412	2	neutral	AA	100	somatic	0	0.5141126003553	0.359526280331607
12	100849212	101005218	2	neutral	AA	45.2882	somatic	0	0.48625607318957	0.717934876447518
12	102779064	102813732	2	neutral	AA	54.5678	somatic	0	0.038177112202009	0.138608365162902
12	102845511	102851289	2	neutral	AA	54.5679	somatic	0	0.168968749234253	0.532396441954762
12	104795586	104798475	2	neutral	AA	100	somatic	0	0.921393283047289	0.942799282536421
12	104798475	104801364	11	gain	AAAAAABBBBB	100	germline	1	0.0832687722397964	0.270044203438824
12	108028377	108031266	2	neutral	AA	100	somatic	0	0.963212827572299	0.954789962979744
12	122369373	122406930	2	neutral	AA	97.3243	somatic	0	0.0953948104304068	0.05840868324858
12	123507639	123600087	2	neutral	AA	36.3413	somatic	0	0.00227836809028798	0.0091291792717294
12	123761871	123773427	2	neutral	AA	36.3796	somatic	0	0.316654988836171	0.227310991915658
12	124091217	124105662	2	neutral	AA	54.5678	somatic	0	0.802428319071328	0.458031011926356
12	125720613	125755281	2	neutral	AA	18.3656	somatic	0	0.636643716688842	0.739573935338993
12	126122184	126130851	2	neutral	AA	100	somatic	0	0.19875729799826	0.471896973275307
12	127901808	127907586	2	neutral	AA	100	somatic	0	0.424504230576798	0.823175723374941
12	129123855	129126744	2	neutral	AA	97.3243	somatic	0	0.635879672498196	0.812375631298094
13	20251890	20254779	0	loss	-	-1	germline	1	0.0832652256426884	0.270038043641427
13	22019958	22022847	0	loss	-	-1	germline	1	0.0832659349523205	0.2700392755927
13	45417969	45426636	1	loss	A	-1	somatic	0	0.00323620072710117	0.00676528841519841
13	50493942	50502609	1	loss	A	-1	germline	1	0.0143256987544976	0.036682650683966
13	57049083	57193533	1	loss	A	-1	germline	1	1.36944389984642e-26	0
13	63029313	63069759	3	gain	-	-1	germline	1	1.31236587639964e-10	5.409783732091e-12
13	71901432	71907210	1	loss	A	-1	germline	1	0.0143161774516745	0.03666004767066
13	86071977	86080644	1	loss	A	-1	germline	1	0.00271349824157855	0.00498332604769625
13	87536700	87559812	2	neutral	AA	100	somatic	0	0.338082031892631	0.668545514431199
13	87672483	87684039	2	neutral	AA	100	somatic	0	0.00999320157194928	0.0249781866842784
13	90209025	90214803	1	loss	A	-1	somatic	0	0.015180627517177	0.0391963137508435
13	98601570	98607348	1	loss	A	-1	germline	1	0.0143548574227021	0.0367255286633131
13	100066293	100072071	2	neutral	AA	54.5678	somatic	0	0.841916766509222	0.992311301399521
13	100843434	100846323	2	neutral	AA	100	somatic	0	0.203479364859443	0.439753318882679
13	103663098	103665987	2	neutral	AA	100	somatic	0	0.481782075899918	0.70622632712005
13	104954481	104968926	2	neutral	AA	100	somatic	0	0.942888063057823	0.944669466843588
13	109784889	109787778	1	loss	A	-1	somatic	0	0.0832815410026335	0.270066379558684
14	0	18660051	4	gain	AAAB	-1	somatic	0	0.0832751564229664	0.270055291332597
14	18660051	18662940	6	gain	AAAAAB	50.2528	germline	1	0.0832751564229664	0.270055291332597
14	18662940	18680274	4	gain	AAAB	-1	somatic	0	NA	NA
14	18680274	18694719	3	gain	AAB	7.41312	germline	1	0.00270733922394309	0.00496835981227772
14	18694719	19749204	4	gain	AAAB	-1	somatic	0	NA	NA
14	19749204	19957212	4	gain	AAAB	2.00386	germline	1	2.71292982451937e-25	0
14	22447530	22450419	2	neutral	AA	100	somatic	0	0.158274570965089	0.382767472951708
14	29317572	29329128	2	neutral	AA	24.9697	somatic	0	0.233182158611777	0.289980248434998
14	31721220	31726998	2	neutral	AA	100	somatic	0	0.180468904123488	0.437978828341737
14	41055579	41081580	2	neutral	AA	18.3046	somatic	0	0.933592107531723	0.99277599111121
14	42055173	42060951	2	neutral	AA	54.5678	somatic	0	0.665263812157176	0.652393053062715
14	42442299	42448077	2	neutral	AA	100	somatic	0	0.260456642832208	0.647610921491271
14	47238039	47249595	1	loss	A	-1	germline	1	0.00271081616717677	0.00497789773613511
14	49910364	49913253	1	loss	A	-1	somatic	0	0.0855348175741643	0.273957726419819
14	51944220	51964443	2	neutral	AA	100	somatic	0	0.516744371439505	0.84983718485204
14	53102709	53114265	2	neutral	AA	54.5705	somatic	0	0.261703850579862	0.586692107133923
14	55457244	55463022	2	neutral	AA	100	germline	1	0.41489054648195	0.362327509212221
14	57236868	57444876	2	neutral	AA	100	somatic	0	0.403272537745101	0.69156992728397
14	60010308	60122979	2	neutral	AA	12.6461	somatic	0	0.547445631068409	0.533229034362254
14	61246800	61252578	2	neutral	AA	100	somatic	0	0.117566720175971	0.158992310828287
14	68183289	68197734	2	neutral	AA	100	somatic	0	0.962435187967999	0.993360957949682
14	68324850	68327739	2	neutral	AA	100	germline	1	0.878776582644241	0.928696565210374
14	69728904	69731793	2	neutral	AA	100	somatic	0	0.728211663868794	0.863874836439894
14	73689723	73692612	2	neutral	AA	100	somatic	0	0.11631122389401	0.323406446840909
14	74244411	74258856	2	neutral	AA	21.8915	somatic	0	0.27050287508974	0.608518904859287
14	75530016	75547350	2	neutral	AA	54.5678	somatic	0	0.484008467868113	0.96255088918993
14	75610908	75850695	2	neutral	AA	18.2885	somatic	0	0.031206154939687	0.0117117624364177
14	76702950	76714506	2	neutral	AA	100	germline	1	0.997487109911917	0.991292715929628
14	77387643	77419422	2	neutral	AA	100	somatic	0	0.946313588406632	0.81517481176013
14	85991085	86022864	1	loss	A	-1	germline	1	9.41396041786454e-09	5.69745362000162e-10
14	86626665	86632443	2	neutral	AA	54.5679	somatic	0	0.272539357736981	0.353151657363619
14	96079473	96082362	2	neutral	AA	100	somatic	0	0.77260843081298	0.88545885464404
14	99927621	99930510	5	gain	AAABB	5.87967	somatic	0	0.0832794127653548	0.270062683446401
14	102458385	102530610	2	neutral	AA	36.3787	somatic	0	0.0217393358722365	0.0704717115927187
14	103252860	103310640	2	neutral	AA	53.6073	somatic	0	0.749102255955434	0.959593720712291
14	105330051	105350274	2	neutral	AA	10.9137	somatic	0	0.819031374226833	0.424292834242004
15	0	19806984	6	gain	AAAABB	-1	somatic	0	0.0832680629105852	0.27004297147114
15	19806984	20667906	6	gain	AAAABB	0.784937	somatic	0	1.34392653887596e-12	5.74873482150906e-13
15	20667906	20670795	6	gain	AAAABB	11.2182	germline	1	0.0832758658011268	0.270056523341308
15	22225077	22230855	3	gain	AAB	8.47518	germline	1	0.0143209934128519	0.0366570123735414
15	22230855	22271301	3	gain	AAB	1.7036	germline	1	0.000107987869965359	9.12237396053506e-05
15	23880474	23944032	2	neutral	AA	38.1412	somatic	0	0.116806865916081	0.189420352977049
15	24871401	24874290	1	loss	A	-1	germline	1	0.0832737376813307	0.270052827327478
15	46888470	46937583	2	neutral	AA	100	somatic	0	0.3188392220356	0.520925323170436
15	48306969	48390750	2	neutral	AA	41.5292	somatic	0	0.253034279678411	0.4600746721824
15	59236056	59256279	2	neutral	AA	54.568	germline	1	0.0367243090825207	0.104362549536877
15	59952528	59966973	2	neutral	AA	100	somatic	0	0.728862041578708	0.674637024301086
15	67466817	67518819	2	neutral	AA	54.6055	somatic	0	0.427216186261146	0.857419805222523
15	68154399	68163066	2	neutral	AA	100	somatic	0	0.625109815394287	0.976239834672733
15	69286887	69301332	2	neutral	AA	100	somatic	0	0.48103443696084	0.58287786812312
15	72311670	72326115	2	neutral	AA	54.5681	somatic	0	0.925667663487392	0.929516091617503
15	76593168	76601835	1	loss	A	-1	germline	1	0.0143239060826171	0.0366597104045659
15	79802847	79840404	2	neutral	AA	27.2903	somatic	0	0.199265881823986	0.14779470756906
15	89174763	89203653	2	neutral	AA	100	somatic	0	0.108265161229199	0.188242263268397
15	97272630	97281297	2	neutral	AA	100	somatic	0	0.902426477598424	0.997492638619318
15	99471159	99482715	2	neutral	AA	100	germline	1	0.896230103142578	0.894182048146596
15	99875619	99881397	1	loss	A	-1	germline	1	0.0143547451737681	0.0367474910448772
16	358236	381348	2	neutral	AA	12.2063	somatic	0	0.0501035607951074	0.161218731082374
16	846477	849366	4	gain	AAAA	12.793	germline	1	0.0832886354450888	0.270078700199664
16	4645512	4657068	2	neutral	AA	21.8276	germline	1	0.88119127368008	0.802003045572222
16	21557718	21583719	4	gain	AABB	55.1907	germline	1	2.03872791826029e-07	3.05110783305196e-08
16	22615092	22690206	4	gain	AAAB	4.63508	germline	1	4.73598551391501e-18	0
16	22690206	22698873	4	gain	AAAB	33.2981	germline	1	0.00270164177707224	0.00495986530146331
16	23002218	23013774	2	neutral	AA	100	somatic	0	0.813681340298273	0.79069649018087
16	34061310	34064199	22	gain	AAAAAAAAAAAAAAABBBBBBB	100	germline	1	0.0832680629105852	0.27004297147114
16	34075755	34084422	3	gain	AAB	42.4221	germline	1	0.00276584792956851	0.00511918880428408
16	34084422	34087311	12	gain	AAAAAAAABBBB	100	germline	1	0.0832687722397964	0.270044203438824
16	34095978	34098867	10	gain	AAAAAABBBB	8.37303	germline	1	0.0832687722397964	0.270044203438824
16	34173981	34176870	5	gain	AAABB	1.19701	germline	1	0.0832808315853121	0.270065147517158
16	34191315	34211538	2	neutral	AA	3.76574	somatic	0	0.00191138740842761	0.00874731106186388
16	34211538	34214427	4	gain	AAAB	2.60763	somatic	0	0.083282959851962	0.270068843654063
16	34220205	34257762	2	neutral	AA	100	somatic	0	0.0229282270986104	0.0228620081207592
16	34595775	34598664	6	gain	-	-1	germline	1	0.0832758658011268	0.270056523341308
16	34902009	34904898	4	gain	-	-1	germline	1	0.0832822504248501	0.270067611604325
16	34904898	34959789	2	neutral	AA	100	germline	1	2.24670841691668e-05	1.82159484793942e-05
16	36124056	36126945	5	gain	-	-1	germline	1	0.0832765751841822	0.270057755354121
16	46466676	46472454	2	neutral	AA	100	germline	1	0.597230683911143	0.771331147970375
16	52929369	52964037	2	neutral	AA	92.9768	somatic	0	0.497220895443332	0.802309128751368
16	54541431	54555876	2	neutral	AA	100	somatic	0	0.783464833670459	0.953311768397957
16	55766367	55786590	1	loss	A	-1	somatic	0	0.00271290429103956	0.00498387605256667
16	70150698	70162254	3	gain	AAB	10.7466	germline	1	0.000533072212117701	0.000671963094820649
16	76598946	77029407	3	gain	AAB	0.17964	germline	1	6.60066687344419e-94	0
16	88729857	88761636	2	neutral	AA	28.4684	somatic	0	0.748695338953929	0.845825372481296
17	2704104	2709882	2	neutral	AA	100	somatic	0	0.687784258050421	0.847355419133899
17	10042164	10047942	2	neutral	AA	100	somatic	0	0.508593481917635	0.913148939765375
17	21291930	21303486	4	gain	AABB	0.277017	germline	1	0.000532468613458344	0.000671345152310598
17	21855285	21858174	6	gain	-	-1	somatic	0	0.0832758658011268	0.270056523341308
17	21858174	21967956	3	gain	-	-1	somatic	0	3.21319872499773e-24	0
17	21967956	21982401	18	gain	-	-1	germline	1	0.00270013246570335	0.00495794902951552
17	21985290	21991068	9	gain	-	-1	germline	1	0.0143083405706504	0.0366361085229586
17	22123962	22158630	5	gain	AAABB	0.407659	germline	1	1.97659519694008e-09	7.56195106532687e-11
17	26783919	26809920	3	gain	-	-1	germline	1	1.06141883672095e-06	3.58851281800909e-07
17	26812809	26815698	5	gain	-	-1	germline	1	0.0832808315853121	0.270065147517158
17	26815698	26827254	4	gain	-	-1	germline	1	0.000532772305684445	0.000672198052756756
17	26827254	26876367	3	gain	-	-1	somatic	0	4.16741937809648e-11	1.06460729121238e-10
17	26876367	26879256	4	gain	-	-1	somatic	0	0.083282959851962	0.270068843654063
17	26937036	26939925	15	gain	AAAAAAAAAABBBBB	3.44406	germline	1	0.0832680629105852	0.27004297147114
17	40188879	40581783	2	neutral	AA	13.2789	somatic	0	0.923176902951252	0.900149625900273
17	58742037	58756482	2	neutral	AA	100	somatic	0	0.102358168899072	0.284918096065889
17	64707822	65109393	2	neutral	AA	100	somatic	0	0.00413727705197103	0.0359814527737506
17	70922061	70927839	2	neutral	AA	100	somatic	0	0.511453083753281	0.447188451041964
17	80559765	80579988	2	neutral	AA	39.7306	germline	1	0.0765935882824198	0.285458888544461
17	82584954	82587843	5	gain	AAABB	13.523	germline	1	0.0832765751841822	0.270057755354121
18	5304204	5309982	1	loss	A	-1	somatic	0	0.01456282506599	0.0372110209152902
18	7982307	7988085	1	loss	A	-1	somatic	0	0.0157572445458072	0.0408600639283375
18	29594916	29597805	1	loss	A	-1	somatic	0	0.0833681266515578	0.270216719409306
18	34159536	34168203	1	loss	A	-1	somatic	0	0.015479882338308	0.0399426116298978
18	40680009	40685787	1	loss	A	-1	germline	1	0.0143824941927703	0.0368303756363759
18	41283810	41289588	1	loss	A	-1	germline	1	0.0143087882904565	0.0366377939306368
18	41347368	41350257	1	loss	A	-1	somatic	0	0.0833922700659868	0.270258628281617
18	47682945	47706057	2	neutral	AA	100	germline	1	0.166909068766689	0.126750424494541
18	49439457	49442346	1	loss	A	-1	somatic	0	0.0836318802886378	0.270674275685208
18	49820805	49832361	2	neutral	AA	2.91356	somatic	0	0.0707875888435216	0.0519555863346292
18	51025518	51028407	2	neutral	AA	100	germline	1	0.393696145275909	0.633543235918346
18	51242193	51247971	2	neutral	AA	54.5873	somatic	0	0.570097299189338	0.720182566527451
18	52790697	52793586	3	gain	AAB	31.5422	somatic	0	0.0833908497083869	0.270256162922539
18	53426277	53429166	1	loss	A	-1	somatic	0	0.0833759371365893	0.270230277643067
18	61284357	61287246	2	neutral	AA	100	somatic	0	0.159240236458299	0.384059813944155
18	63222876	63225765	2	neutral	AA	100	somatic	0	0.932434550117417	0.946154948315081
18	63742896	63757341	2	neutral	AA	16.46	germline	1	0.422165531988759	0.528044939082075
18	64017351	64150245	2	neutral	AA	56.3591	somatic	0	0.190742709181487	0.640054764274583
18	64421811	64462257	2	neutral	AA	36.3845	somatic	0	0.0559427693765094	0.0567357645188242
18	65802753	65834532	2	neutral	AA	100	somatic	0	0.714430127978902	0.925262300580349
18	66056985	66065652	1	loss	A	-1	germline	1	0.00273543430644615	0.00504186768349135
18	71205183	71210961	2	neutral	AA	25.1876	germline	1	0.116729911147761	0.377646311542289
18	71771427	71785872	2	neutral	AA	100	germline	1	0.784421895071966	0.687239135738082
18	72620793	72623682	2	neutral	AA	100	somatic	0	0.449324521173537	0.680471588813793
18	72643905	72704574	2	neutral	AA	27.7126	somatic	0	0.102369893501724	0.118022434303374
18	74957994	75033108	2	neutral	AA	100	somatic	0	0.830979890948689	0.856581876740067
18	76497831	76587390	2	neutral	AA	27.9647	somatic	0	0.0058432788559866	0.0327303898352528
18	77543649	77549427	2	neutral	AA	36.3802	germline	1	0.812561859528803	0.713089612465783
18	79519725	79522614	1	loss	A	-1	somatic	0	0.0832992780266763	0.270097181930387
19	1799847	1817181	2	neutral	AA	100	somatic	0	0.281293075257859	0.539466721006436
19	2129193	2160972	2	neutral	AA	16.2588	somatic	0	0.00114919306732835	0.0197116903730449
19	2779218	2782107	2	neutral	AA	100	somatic	0	0.951448884183246	0.951577663884449
19	3518802	3533247	2	neutral	AA	98.3157	somatic	0	0.287155887532463	0.210218501077291
19	7447842	7453620	5	gain	AAABB	5.70875	germline	1	0.0143097957052051	0.0366374568436755
19	11761119	11764008	2	neutral	AA	100	somatic	0	0.880665335237603	0.929366163351564
19	15476373	15525486	2	neutral	AA	100	somatic	0	0.0144412609747774	0.0310259337846491
19	15698826	15704604	2	neutral	AA	100	germline	1	0.858745738580658	0.986977408267422
19	16343073	16345962	2	neutral	AA	100	somatic	0	0.124544254291212	0.335674218121382
19	17397558	17417781	2	neutral	AA	34.9518	somatic	0	0.88928520499879	0.985930801758348
19	21499938	21546162	2	neutral	AA	1.50942	germline	1	0.177329524252292	0.6471387594549
19	24331158	24368715	4	gain	AABB	0.42561	germline	1	4.24939527510493e-10	1.02416963798646e-11
19	24368715	24406272	5	gain	AAABB	0.506373	germline	1	9.23169913788917e-09	5.58670554262619e-10
19	24414939	24417828	4	gain	AAAA	5.59199	germline	1	0.0832886354450888	0.270078700199664
19	27338607	27341496	4	gain	AAAB	6.058	germline	1	0.0832822504248501	0.270067611604325
19	27341496	27344385	2	neutral	AA	60.6209	somatic	0	0.567843752455816	0.768636128466707
19	27344385	27347274	4	gain	AAAB	6.43541	germline	1	0.083282959851962	0.270068843654063
19	27347274	27358830	6	gain	AAAABB	0.354055	germline	1	0.000532263613863644	0.000671135173244908
19	27358830	27361719	6	gain	AAAABB	1.2681	germline	1	0.0832758658011268	0.270056523341308
19	27361719	27379053	6	gain	AAAABB	0.42551	germline	1	0.000532267555469897	0.000671147523250148
19	27379053	27381942	3	gain	AAB	2.15812	germline	1	0.0833099217098169	0.270115664584255
19	27381942	27399276	5	gain	AAABB	0.299263	germline	1	2.21089219168156e-05	1.22969073730328e-05
19	27399276	27405054	3	gain	AAB	8.62831	germline	1	0.0152983590902973	0.0396057987433902
19	35361360	35370027	1	loss	A	-1	germline	1	0.00271249473919193	0.00498256988183987
19	40723344	40734900	2	neutral	AA	54.5679	somatic	0	0.241297744371146	0.316527246361776
19	45337077	45351522	2	neutral	AA	100	somatic	0	0.114893692341341	0.315925519677005
19	47466270	47682945	2	neutral	AA	100	somatic	0	0.000173954503396327	0.00626608123472749
19	47838951	47888064	2	neutral	AA	32.6764	somatic	0	5.81641773028271e-06	2.66190483674267e-05
19	52932258	52938036	2	neutral	AA	54.5722	somatic	0	0.176940626871754	0.288818216785815
19	52938036	52940925	1	loss	A	-1	somatic	0	0.084997577355898	0.27303386463081
19	53712288	53718066	2	neutral	AA	54.5679	somatic	0	0.0783245561384538	0.22887350338512
19	55659474	55671030	2	neutral	AA	18.7192	somatic	0	0.634255620662274	0.838656636925747
19	57811779	57820446	3	gain	AAB	28.9184	somatic	0	0.00270539800154722	0.00496644053213802
20	60669	66447	8	gain	-	-1	germline	1	0.0143087882904565	0.0366357714495631
20	583578	595134	2	neutral	AA	100	somatic	0	0.255587937047812	0.566163630411768
20	2825442	2834109	2	neutral	AA	100	somatic	0	0.392280496889668	0.754703961889955
20	8014086	8089200	2	neutral	AA	83.4623	somatic	0	0.0258861522670972	0.101180699225373
20	10016163	10027719	2	neutral	AA	55.0311	somatic	0	0.89317585810279	0.982771604203497
20	10674855	10706634	2	neutral	AA	58.9587	somatic	0	0.543532923695305	0.554630346859688
20	12806937	12824271	2	neutral	AA	54.6088	somatic	0	0.0851917499609242	0.35271713712006
20	14416110	14424777	2	neutral	AA	100	somatic	0	0.520676978168433	0.942868482099394
20	16631973	16643529	2	neutral	AA	36.4154	somatic	0	0.311576139526392	0.536879116694189
20	17045100	17047989	2	neutral	AA	100	somatic	0	0.364788188259229	0.607661104335062
20	17518896	17521785	2	neutral	AA	100	somatic	0	0.723908112679451	0.861677622419354
20	21286152	21303486	2	neutral	AA	27.4199	somatic	0	0.638617255559701	0.81588003862435
20	21303486	21309264	1	loss	A	-1	somatic	0	0.0143637275353535	0.0367985557018027
20	25856550	28762884	2	neutral	AA	1.22265	somatic	0	0.207125009835831	0.490966680619387
20	28780218	28788885	7	gain	-	-1	germline	1	0.0143092360226207	0.0366361085229586
20	28803330	28832220	9	gain	-	-1	germline	1	9.64037401907158e-07	2.2523607667857e-07
20	28835109	28837998	4	gain	-	-1	germline	1	0.0832850881626693	0.270072539827892
20	28869777	28872666	7	gain	-	-1	germline	1	0.0832751564229664	0.270055291332597
20	29262681	29265570	22	gain	-	-1	germline	1	0.0832680629105852	0.27004297147114
20	29889594	29895372	4	gain	-	-1	germline	1	0.0143166253877889	0.0366546517389076
20	30149604	30169827	1	loss	A	-1	germline	1	2.9832378682693e-05	3.63670827707718e-05
20	30938301	30941190	5	gain	-	-1	germline	1	0.0832779939649783	0.270060219392055
20	31166532	31169421	5	gain	-	-1	germline	1	0.0832794127653548	0.270062683446401
20	31169421	31183866	3	gain	-	-1	somatic	0	0.00011267987748579	9.83006002540643e-05
20	31183866	31189644	19	gain	-	-1	germline	1	0.0143073332462695	0.0366337490661711
20	31189644	31238757	3	gain	AAB	2.40068	germline	1	0.000123411887859807	0.000138731952877391
20	31238757	31244535	31	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	15.6079	germline	1	0.0143068855666253	0.036632737911105
20	31244535	31247424	2	neutral	AA	15.647	somatic	0	0.0844767038400737	0.272135810147206
20	32830596	32856597	2	neutral	AA	100	somatic	0	0.188410468496775	0.283990235995383
20	33431508	33434397	2	neutral	AA	100	somatic	0	0.163545791817383	0.389712750342818
20	35517366	35528922	2	neutral	AA	54.568	somatic	0	0.131072671006616	0.235319970017042
20	43641234	43647012	1	loss	A	-1	somatic	0	0.0143391501029783	0.0367275554788824
20	43647012	43675902	2	neutral	AA	100	somatic	0	5.18549084953554e-05	0.000471556308067056
20	43678791	43681680	2	neutral	AA	100	somatic	0	0.27046462200071	0.514970394136
20	43684569	43699014	2	neutral	AA	18.4292	somatic	0	0.240677667646689	0.237999805320376
20	48344526	48347415	2	neutral	AA	54.5678	somatic	0	0.290531368849276	0.535848378272573
20	51086187	51091965	2	neutral	AA	54.5681	somatic	0	0.931852196183787	0.961366980112583
20	51773769	51776658	2	neutral	AA	54.5678	somatic	0	0.229857573810504	0.470471374999165
20	53452278	53466723	2	neutral	AA	100	germline	1	0.323230540233953	0.456249394762505
20	53466723	53472501	2	neutral	AA	13.8842	germline	1	0.153019714742639	0.352335561069778
20	54030078	54041634	1	loss	A	-1	germline	1	0.000537223837075092	0.000676390724375087
20	56274831	56329722	2	neutral	AA	13.9633	germline	1	0.859956669906489	0.528443421192903
20	56690847	56716848	2	neutral	AA	72.6259	germline	1	0.0469349284394513	0.104108677925127
20	59683851	59689629	2	neutral	AA	36.379	somatic	0	0.411343117746844	0.624805246787576
20	60261651	60264540	2	neutral	AA	100	somatic	0	0.449802213851114	0.680858442788533
20	62064387	62067276	1	loss	A	-1	somatic	0	0.0832737376813307	0.270052827327478
20	62806860	62815527	2	neutral	AA	54.5678	somatic	0	0.00701878417049351	0.0184177561458916
21	8990568	8996346	8	gain	AAAAABBB	0.836148	germline	1	0.0143084524994433	0.0366357714495631
21	10654632	10692189	6	gain	AAAABB	3.60796	germline	1	1.97628723186259e-09	7.56069651330904e-11
21	10692189	10695078	57	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBBBB	100	germline	1	0.0832666442668474	0.270040507548081
21	10695078	10732635	6	gain	AAAAAB	10.6696	germline	1	4.24519181358991e-10	1.0233147662575e-11
21	10732635	10738413	5	gain	AAAAA	4.56376	germline	1	0.01431080318252	0.0366388052078084
21	10752858	10755747	13	gain	AAAAAAAAABBBB	12.8838	germline	1	0.0832687722397964	0.270044203438824
21	14364108	14375664	2	neutral	AA	100	somatic	0	0.586582303824874	0.303007636652836
21	19463193	19471860	1	loss	A	-1	germline	1	0.00272147686548028	0.00499364790250767
21	19893654	19986102	2	neutral	AA	100	somatic	0	0.0164632520836797	0.00270176925189514
21	22568868	22623759	2	neutral	AA	38.3008	somatic	0	0.0169215260195941	0.0202814266364355
21	23814027	23825583	2	neutral	AA	100	somatic	0	0.030988602323068	0.154742933277558
21	24449607	24492942	2	neutral	AA	27.734	somatic	0	0.131553666406642	0.423959039002496
21	33931305	33954417	2	neutral	AA	54.5678	somatic	0	0.954514721012635	0.627906049193428
21	34618887	34670889	2	neutral	AA	24.1059	somatic	0	0.209023967170441	0.606484626831359
21	37611891	37617669	2	neutral	AA	54.5678	somatic	0	0.354591797108055	0.773986467651371
21	41249142	41257809	2	neutral	AA	100	somatic	0	0.800886566228722	0.767592168221663
21	42956541	42968097	2	neutral	AA	18.2712	somatic	0	0.0613259020284726	0.260354761544845
21	43335000	43337889	3	gain	AAA	29.292	somatic	0	0.0832964398972153	0.270092253378604
21	43863687	43866576	1	loss	A	-1	somatic	0	0.083765079402431	0.270905117897256
22	16559748	16568415	2	neutral	AA	4.33723	somatic	0	0.00655390472875563	0.0205581662201664
22	21661722	21861063	2	neutral	AA	40.2921	somatic	0	0.00869779716616927	0.00746576723735404
22	28962225	29037339	2	neutral	AA	36.5231	somatic	0	0.069855255485548	0.086534419163861
22	33067494	33081939	3	gain	AAB	10.5145	germline	1	0.000107874228155456	9.11377654875256e-05
22	35060904	35075349	2	neutral	AA	100	somatic	0	0.816900593218306	0.439956002469583
22	36124056	36155835	2	neutral	AA	12.7681	somatic	0	0.487117135756549	0.931693053144693
22	36745191	36753858	1	loss	A	-1	germline	1	0.0145928644468249	0.0371475127229867
22	40896684	40948686	2	neutral	AA	100	somatic	0	0.00260081726788307	0.00244146257861566
22	45007731	45039510	2	neutral	AA	100	somatic	0	0.358036223815819	0.489161222629261
22	45319743	45325521	2	neutral	AA	100	somatic	0	0.770624800042784	0.816381522948968
22	45325521	45328410	4	gain	AABB	77.1169	germline	1	0.0832900543923246	0.270081164377092
22	45328410	45363078	2	neutral	AA	100	somatic	0	0.876045362973153	0.936942214033596
22	46564902	46683351	2	neutral	AA	5.59357	somatic	0	0.447716709113279	0.644925215147611
22	49826583	49829472	1	loss	A	-1	somatic	0	0.0836311684552378	0.270673041620682
22	50641281	50644170	5	gain	AAABB	8.15614	germline	1	0.0832808315853121	0.270065147517158
X	5136642	5139531	0	loss	-	-1	germline	1	0.0832687722397964	0.270044203438818
X	5139531	5165532	2	neutral	AA	100	somatic	0	0.240045102159615	0.416636549025479
X	9273690	9279468	2	neutral	AA	100	somatic	0	0.721039163085922	0.874412958229063
X	10342620	10388844	2	neutral	AA	47.936	somatic	0	0.999573197177093	0.493747585803482
X	13064058	13069836	2	neutral	AA	100	somatic	0	0.440834566807874	0.719602936589115
X	16608861	16626195	2	neutral	AA	72.2286	somatic	0	0.974602478095431	0.622777870156966
X	27376164	27425277	2	neutral	AA	100	somatic	0	0.00410343608184882	0.00841249455302584
X	40024206	40027095	2	neutral	AA	100	somatic	0	0.832485243143366	0.911289267929196
X	50225265	50228154	0	loss	-	-1	germline	1	0.0832666442668474	0.270040507548075
X	51562872	51574428	2	neutral	AA	100	somatic	0	0.70833229999	0.885484782414968
X	52337124	52507575	2	neutral	AA	54.5679	somatic	0	0.529720842246908	0.74313227844368
X	56474172	56482839	2	neutral	AA	100	somatic	0	0.580895798731363	0.871247406122132
X	57696219	57699108	1	loss	A	-1	somatic	0	0.0832815410026335	0.270066379558684
X	57699108	57742443	2	neutral	AA	100	somatic	0	0.738564209654502	0.835881831598855
X	58487805	58493583	1	loss	A	-1	somatic	0	0.0143285002005078	0.0366684802053406
X	62595963	62671077	2	neutral	AA	5.13384	germline	1	0.0761675522668693	0.333249284169851
X	67019022	67287699	2	neutral	AA	19.1663	somatic	0	0.0741600248557292	0.0404952962160263
X	67903056	67908834	1	loss	A	-1	somatic	0	0.0143353377569244	0.036689062712368
X	75304674	75368232	2	neutral	AA	100	somatic	0	0.907672430689885	0.92866955390834
X	76260933	76312935	2	neutral	AA	46.2893	somatic	0	0.493728929753656	0.678820370078323
X	83604771	83720331	2	neutral	AA	54.5777	somatic	0	0.61185195411188	0.55251114767908
X	85066605	85098384	2	neutral	AA	54.5693	somatic	0	0.238892343792905	0.401728297269234
X	87808266	87840045	2	neutral	AA	100	somatic	0	0.297233844156242	0.227058991653818
X	96556158	96917283	2	neutral	AA	34.9972	somatic	0	0.00170278727818563	0.00487445207305914
X	97217739	97237962	2	neutral	AA	54.5679	somatic	0	0.640617083311212	0.890263975614736
X	97584642	97613532	2	neutral	AA	54.5789	somatic	0	0.683389461789221	0.778252146311785
X	98150886	98252001	2	neutral	AA	54.7518	somatic	0	0.20986576672665	0.304771631535835
X	98717130	98725797	2	neutral	AA	100	somatic	0	0.509609506767376	0.57564897925418
X	99835173	99991179	2	neutral	AA	100	somatic	0	0.915622901806456	0.800552909732108
X	103775769	103856661	2	neutral	AA	54.8143	somatic	0	0.930758871579771	0.79575793143911
X	104243787	104292900	2	neutral	AA	27.329	somatic	0	0.336747095564891	0.55736656427941
X	108161271	108476172	2	neutral	AA	27.8539	somatic	0	0.00123698788010916	0.000697554228948127
X	108773739	108776628	0	loss	-	-1	somatic	0	0.0832666442668474	0.270040507548075
X	108811296	108843075	2	neutral	AA	100	somatic	0	0.0540798501122077	0.119999384717269
X	110042010	110125791	2	neutral	AA	100	germline	1	0.27597898568468	0.582711794820827
X	111125385	111168720	2	neutral	AA	100	somatic	0	0.387960455278205	0.525802248066305
X	115620669	115626447	2	neutral	AA	61.808	somatic	0	0.319804754531645	0.343209434400214
X	119604600	119613267	2	neutral	AA	100	somatic	0	0.150205079763791	0.298714569216594
X	119740383	119743272	0	loss	-	-1	somatic	0	0.0832673535862689	0.270041739507554
X	123545196	123649200	2	neutral	AA	54.3664	somatic	0	0.0965920274225127	0.107294507587572
X	123692535	123698313	2	neutral	AA	100	somatic	0	0.884293905218852	0.980667134835041
X	125272818	125275707	0	loss	-	-1	germline	1	0.0832652256426884	0.270038043641427
X	128780064	128791620	2	neutral	AA	36.3786	somatic	0	0.20182647167584	0.246481021603334
X	135589437	135716553	2	neutral	AA	54.5678	somatic	0	0.938212466672527	0.631130612823572
X	136051677	136083456	2	neutral	AA	100	somatic	0	0.8245062062535	0.932849869147493
X	139977828	140096277	2	neutral	AA	13.5282	somatic	0	0.0687386794294682	0.303569354938581
X	140723190	140766525	2	neutral	AA	9.56417	germline	1	0.785928409533551	0.876673549044994
X	145339812	145342701	0	loss	-	-1	germline	1	0.0832666442668474	0.270040507548075
X	147841686	147945690	2	neutral	AA	100	somatic	0	0.191948300739249	0.226165554647211
