chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	819427	821816	3	gain	AAB	5.84459	germline	1	0.0832886628496288	0.270078852343238
1	3163036	3196482	2	neutral	AA	53.442	somatic	0	0.804282549395265	0.828848892338694
1	5669097	5673875	4	gain	AABB	35.9559	germline	1	0.014311546836928	0.0366400075492598
1	16202198	16261923	2	neutral	AA	18.1893	somatic	0	0.289229311299913	0.33294339654222
1	16613106	16636996	7	gain	AAAAAAB	30.9447	germline	1	0.000532151070706713	0.000671079022271148
1	16720611	16725389	4	gain	AAAB	13.5222	germline	1	0.014309595163666	0.036636929106217
1	16883063	16942788	3	gain	AAB	0.960571	germline	1	1.98578607678981e-09	7.61735119425566e-11
1	16949955	16952344	2	neutral	AA	100	somatic	0	0.575354267910938	0.773667904822349
1	18634200	18670035	2	neutral	AA	100	somatic	0	0.328863202014866	0.238130473220804
1	27657453	27791237	2	neutral	AA	25.3264	somatic	0	0.568004969678254	0.364609005234865
1	27884408	27905909	2	neutral	AA	27.2848	somatic	0	0.0120781520304316	0.0482454760518467
1	30005840	30017785	1	loss	A	-1	somatic	0	0.000313516908657595	0.000275421134784737
1	31429684	31432073	6	gain	AAAAAA	8.53562	germline	1	0.0832704052264146	0.270047144150272
1	55661311	55668478	1	loss	A	-1	germline	1	0.00406792194980554	0.00973017014526956
1	75286946	75327559	2	neutral	AA	27.4078	somatic	0	0.920625180139776	0.595528129775302
1	84334089	84713940	2	neutral	AA	54.5678	somatic	0	2.60462919142194e-06	1.05358368363007e-06
1	86933321	87150720	2	neutral	AA	83.5862	somatic	0	0.0194040445302333	0.0203542889094327
1	98598808	98789928	2	neutral	AA	24.0954	germline	1	0.167413642561129	0.190009174474865
1	102287424	102375817	2	neutral	AA	54.5804	somatic	0	0.164132215670823	0.112164993198316
1	103405476	103417421	2	neutral	AA	55.1368	somatic	0	0.266680281746486	0.42413634941749
1	104963104	105003717	2	neutral	AA	100	germline	1	0.0210584895983767	0.00815258403346819
1	105471961	105481517	1	loss	A	-1	germline	1	0.0147252071409186	0.0378824763108758
1	125080873	125083262	7	gain	-	-1	germline	1	0.0832704052264146	0.270047144150272
1	125083262	125085651	5	gain	-	-1	germline	1	0.0832751165607117	0.27005532664959
1	125085651	125088040	1	loss	A	-1	germline	1	0.124018605192214	0.334895759295881
1	125150154	125157321	3	gain	-	-1	germline	1	0.00270181948121064	0.00496031677663289
1	125162099	125166877	5	gain	-	-1	germline	1	0.014309130514162	0.0366366492589802
1	152107630	152241414	2	neutral	AA	45.2298	somatic	0	0.168852023291389	0.0884019298966926
1	152583041	152614098	1	loss	A	-1	germline	1	5.48871543674077e-09	1.41966882694078e-10
1	171546923	171613815	2	neutral	AA	100	somatic	0	0.317237448654699	0.765283537355424
1	180345610	180460282	2	neutral	AA	100	somatic	0	7.30882407207374e-05	0.00194158915663922
1	187629671	187746732	2	neutral	AA	32.9182	somatic	0	0.00230007302633473	0.00135477041581911
1	187746732	187753899	0	loss	-	-1	germline	1	0.014309223442998	0.0366408471639108
1	187753899	187756288	2	neutral	AA	100	somatic	0	0.488666072951188	0.711457006377997
1	190011504	190121398	2	neutral	AA	37.4939	somatic	0	0.596453492406028	0.617505454956968
1	202720984	202840434	2	neutral	AA	42.9635	somatic	0	0.274778128379479	0.38035549373608
1	204584404	204603516	2	neutral	AA	27.5463	somatic	0	0.0888441016979631	0.341153003241951
1	207367589	207372367	0	loss	-	-1	germline	1	0.0149866077016323	0.038688036121445
1	208853547	212558886	2	neutral	AA	5.0452	somatic	0	1.75919851002618e-08	5.02838276794648e-07
1	222814863	222919979	2	neutral	AA	36.4138	somatic	0	0.00716067336493427	0.0377912306788941
1	224011752	224014141	9	gain	AAAAAAAAA	100	germline	1	0.0832698163248096	0.270046121350582
1	228065885	228073052	1	loss	A	-1	somatic	0	0.00445593941354441	0.00965355762264763
1	229676071	229685627	1	loss	A	-1	germline	1	0.00148275167609003	0.00160159000409454
1	230364103	230395160	2	neutral	AA	100	germline	1	0.136296881561821	0.226009447210251
1	234592633	234602189	2	neutral	AA	27.2839	somatic	0	0.178704614246486	0.279740957235053
1	234776586	234781364	7	gain	AAAAABB	3.15374	germline	1	0.0143076437251861	0.036633850889476
1	236095314	236097703	8	gain	AAAAABBB	100	germline	1	0.0832698163248096	0.270046121350582
2	3179759	3182148	7	gain	-	-1	germline	1	0.0832704052264146	0.270047144150272
2	3724451	3726840	4	gain	-	-1	somatic	0	0.0832792391553503	0.270062486484953
2	13060663	13139500	3	gain	-	-1	germline	1	2.5768735738052e-23	0
2	16147251	16149640	1	loss	A	-1	germline	1	0.1197803171806	0.328614146914566
2	34473270	34504327	1	loss	A	-1	germline	1	2.96971395675498e-09	1.13967613124544e-10
2	52522165	52558000	1	loss	A	-1	germline	1	3.0994041798963e-09	1.36563649277832e-10
2	85767489	86598861	2	neutral	AA	8.18194	somatic	0	0.000666300808240137	0.0141429863312493
2	88942470	89004584	2	neutral	AA	1.13529	somatic	0	0.0111453312947326	0.0200766474040441
2	89773842	89783398	5	gain	-	-1	germline	1	0.000532213236469542	0.00067110977953766
2	89783398	89821622	4	gain	AAAB	5.201	germline	1	9.1460789860926e-11	1.3864465131519e-12
2	89821622	89826400	5	gain	AAAAB	100	germline	1	0.0143086658779672	0.0366358097284918
2	89826400	89843123	25	gain	AAAAAAAAAAAAAAAAABBBBBBBB	6.20653	germline	1	4.59411101967469e-06	1.66352435793105e-06
2	89843123	89850290	4	gain	AAAB	9.48189	germline	1	0.00270082028553511	0.00495878250507997
2	91410307	91415085	4	gain	-	-1	germline	1	0.0143100598264797	0.0366386082289127
2	99745528	99759862	2	neutral	AA	100	somatic	0	0.225322592568369	0.412383776158423
2	103491480	103512981	2	neutral	AA	100	somatic	0	0.603337113810157	0.523178910375109
2	115087686	115713604	2	neutral	AA	13.2916	somatic	0	0.0232385068726141	0.026285163961097
2	125685290	125694846	0	loss	-	-1	germline	1	0.014311546836928	0.0366467249378372
2	131127432	132243095	2	neutral	AA	31.1182	somatic	0	0.72602826280361	0.478077351738699
2	132243095	132245484	4	gain	AABB	2.30637	germline	1	0.0832757054926812	0.27005634947473
2	132245484	132281319	2	neutral	AA	1.11686	somatic	0	0.15368229782097	0.277256720851561
2	135117062	135119451	4	gain	AAAB	61.6292	somatic	0	0.0832786502031373	0.270061463642846
2	142482349	142491905	2	neutral	AA	100	somatic	0	0.698921103223795	0.898244213049135
2	146104073	146118407	1	loss	A	-1	germline	1	4.87460912575061e-05	4.73988755473886e-05
2	155645739	155683963	2	neutral	AA	100	somatic	0	0.405594872852603	0.255366849470372
2	164996285	165008230	1	loss	A	-1	germline	1	0.000266964924907971	0.000238883112595012
2	173448567	173465290	2	neutral	AA	39.5802	somatic	0	0.242277357575578	0.329937958958289
2	177462087	177636484	2	neutral	AA	63.7736	somatic	0	0.998668444969836	0.349834563780948
2	179203668	179213224	1	loss	A	-1	somatic	0	0.00102845798725391	0.00130329983474131
2	180214215	180228549	2	neutral	AA	54.5678	somatic	0	0.70996781149641	0.632143884558872
2	189039181	189297193	2	neutral	AA	21.9167	somatic	0	0.0483393112646318	0.0628902814845105
2	222439790	222475625	2	neutral	AA	100	somatic	0	0.629827269774273	0.762735170756552
2	223223382	223232938	2	neutral	AA	100	somatic	0	0.963033794399636	0.998059703169824
2	223689237	223713127	2	neutral	AA	100	somatic	0	0.0445079841936139	0.176965544553401
2	226300414	226307581	1	loss	A	-1	somatic	0	0.00643018677642223	0.00909577187933319
2	229680849	229699961	2	neutral	AA	54.5678	somatic	0	0.592580511605306	0.719914212828425
3	186342	193509	1	loss	A	-1	somatic	0	0.00587944701494025	0.00974246652845834
3	32060380	32067547	1	loss	A	-1	germline	1	0.0185519547147208	0.0496690474211451
3	35615212	35622379	2	neutral	AA	100	germline	1	0.431054700429668	0.758730986581518
3	42141960	42161072	2	neutral	AA	54.5678	somatic	0	0.733936999578876	0.678412331679434
3	44906033	44956202	2	neutral	AA	100	somatic	0	0.0934773312430516	0.068441957357403
3	45997806	46184148	2	neutral	AA	44.8149	somatic	0	5.07999500628547e-05	0.000431865472593218
3	47192306	47216196	3	gain	AAB	13.6776	germline	1	4.35454679070505e-08	4.16439571715443e-09
3	67611089	67623034	2	neutral	AA	54.5678	somatic	0	0.380094740709901	0.556772034915468
3	68690917	68698084	1	loss	A	-1	germline	1	0.00496493966689011	0.00787067781075457
3	75748023	75865084	2	neutral	AA	6.01837	germline	1	0.322598806128574	0.878123723878789
3	77776284	77783451	3	gain	AAB	1.67356	germline	1	0.00294613717782114	0.00579747348759629
3	80012388	80017166	1	loss	A	-1	somatic	0	0.0211698926914578	0.0578843627466459
3	82587730	82637899	2	neutral	AA	100	somatic	0	0.98763390780574	0.459478103380703
3	84991064	85053178	2	neutral	AA	100	somatic	0	0.643767915652761	0.454332054542919
3	88469448	88586509	2	neutral	AA	29.1762	somatic	0	0.789359233281819	0.929162381740861
3	90320923	90323312	2	neutral	AA	21.9503	somatic	0	0.0857345150129107	0.274300620500297
3	90323312	90330479	3	gain	AAA	100	germline	1	0.00270324264768976	0.00496219258835728
3	90667328	90712719	1	loss	A	-1	germline	1	9.10849058793048e-11	2.74669176292264e-13
3	91517812	93794529	2	neutral	AA	37.7338	somatic	0	0.824388025929639	0.895534723407129
3	95724841	95743953	2	neutral	AA	27.2845	germline	1	0.759746121302436	0.759067421761482
3	95746342	95751120	1	loss	A	-1	germline	1	0.0207296867263722	0.0565158516137922
3	96618327	96630272	1	loss	A	-1	somatic	0	0.0424676898481465	0.215602386251169
3	100536287	100600790	2	neutral	AA	100	somatic	0	0.332935752376998	0.808312362817257
3	102863173	102872729	2	neutral	AA	100	somatic	0	0.699602025696405	0.98792113905233
3	131989861	131994639	1	loss	A	-1	somatic	0	0.0231287034580636	0.0538198720173239
3	132269374	132274152	1	loss	A	-1	somatic	0	0.0268442466861759	0.0563521969434353
3	136302006	136306784	1	loss	A	-1	somatic	0	0.0167036142293221	0.0417668032772507
3	162571450	162602507	2	neutral	AA	100	somatic	0	0.0368263637427095	0.071609661330584
3	163414767	163503160	2	neutral	AA	33.1296	somatic	0	0.125713047034043	0.220106186747637
3	165323578	165366580	1	loss	A	-1	germline	1	1.87670482797740e-12	2.17603712826531e-14
3	176327312	176473041	2	neutral	AA	100	somatic	0	0.182462735735669	0.170935216460316
3	182256810	182414484	2	neutral	AA	46.2642	somatic	0	0.00277347603690288	0.00368808371429141
3	193057479	193064646	1	loss	A	-1	somatic	0	0.00627929861297198	0.0101621281437116
3	193157817	193167373	1	loss	A	-1	germline	1	0.0013090422569973	0.00150577533575713
4	126617	133784	0	loss	-	-1	germline	1	0.0143083871026388	0.0366358097284902
4	554248	556637	4	gain	AAAB	98.2392	germline	1	0.0832810060322334	0.270065555028239
4	6894654	6899432	1	loss	A	-1	germline	1	0.0143226107546542	0.0366590429487823
4	7862199	7864588	4	gain	AABB	7.52377	germline	1	0.0832762944280245	0.270057372302698
4	14348334	14386558	2	neutral	AA	100	somatic	0	0.87815011107551	0.922591453103339
4	21837849	21864128	2	neutral	AA	100	somatic	0	0.438709463487142	0.704108444656081
4	40292874	40297652	3	gain	AAB	3.70911	germline	1	0.014313684653249	0.0366470048524113
4	43185953	43190731	2	neutral	AA	54.5678	somatic	0	0.860956590516766	0.99341082091595
4	48568370	48594649	2	neutral	AA	100	somatic	0	0.0632215847456041	0.150159530477284
4	49012724	49089172	2	neutral	AA	100	somatic	0	0.429333374926407	0.163003777870138
4	54481145	54497868	2	neutral	AA	100	somatic	0	0.25714562551834	0.348433453727372
4	59113416	59122972	3	gain	AAB	100	germline	1	0.000534202834075793	0.000675356667009797
4	61072396	61077174	1	loss	A	-1	germline	1	0.0143218667253765	0.0366685638927786
4	64342937	64364438	2	neutral	AA	54.568	somatic	0	0.159664846363851	0.343700314775314
4	68518909	68621636	1	loss	A	-1	germline	1	2.50430710854554e-19	0
4	70107594	70133873	2	neutral	AA	54.5686	somatic	0	0.445289743623652	0.544178415231181
4	71691501	71717780	2	neutral	AA	100	somatic	0	0.815374739969542	0.824304981604469
4	72687714	72692492	1	loss	A	-1	germline	1	0.0176744242318393	0.0441363323859064
4	72792830	73605090	2	neutral	AA	13.4956	somatic	0	7.2015014312603e-05	0.00141830445029545
4	77807341	77816897	2	neutral	AA	100	somatic	0	0.203934595131463	0.38006934106096
4	78141801	78151357	2	neutral	AA	54.5678	somatic	0	0.294549204923202	0.703867732749853
4	78805943	78994674	2	neutral	AA	100	somatic	0	2.59696259740345e-05	0.00013280887634981
4	81063548	81068326	2	neutral	AA	100	somatic	0	0.642717522923554	0.582313585470121
4	89802510	89835956	2	neutral	AA	100	germline	1	0.0686870890659906	0.192597766493465
4	90366314	90371092	1	loss	A	-1	somatic	0	0.0212822942009078	0.0468702289414413
4	100240051	100271108	2	neutral	AA	100	somatic	0	0.0332025525894397	0.0684373168745176
4	107712843	107729566	2	neutral	AA	100	somatic	0	0.397823569529328	0.83438432854167
4	109769772	109805607	2	neutral	AA	54.5678	somatic	0	0.249646680779516	0.143022933361178
4	114253925	114261092	1	loss	A	-1	germline	1	0.00476177145919331	0.008603859765005
4	120513105	120546551	2	neutral	AA	100	somatic	0	0.595697455603704	0.800760028117452
4	132668337	132694616	2	neutral	AA	100	somatic	0	0.330360324425607	0.150339568603278
4	139997789	140019290	2	neutral	AA	54.5678	somatic	0	0.446230010363223	0.524760523075327
4	141197067	141263959	2	neutral	AA	54.8585	somatic	0	0.125560878770475	0.320761286493013
4	142052329	142080997	2	neutral	AA	100	somatic	0	0.681431598842901	0.471314744850709
4	151032580	151039747	2	neutral	AA	54.5682	somatic	0	0.559610982008825	0.34849622199644
4	154346123	154379569	2	neutral	AA	18.1917	somatic	0	0.169180361664342	0.412957424186169
4	157516326	157533049	2	neutral	AA	37.5742	somatic	0	0.901404050613085	0.492302858885036
4	165079900	165084678	1	loss	A	-1	germline	1	0.0176301623704899	0.0467880978917997
4	171456141	171458530	0	loss	-	-1	germline	1	0.0832651052334245	0.270037939054858
4	172502523	172512079	1	loss	A	-1	germline	1	0.00147195359829097	0.00157787028562295
4	176076467	176097968	2	neutral	AA	54.5678	somatic	0	0.466045959010893	0.682274786939516
4	176800334	176821835	2	neutral	AA	100	somatic	0	0.0939526267041682	0.184333023426769
4	182151694	182175584	2	neutral	AA	70.038	somatic	0	0.342119181970373	0.334709542052496
4	185520184	185522573	0	loss	-	-1	germline	1	0.0832651052334245	0.270037939054858
4	186788743	186834134	2	neutral	AA	96.5471	somatic	0	0.874072827729771	0.750966995051309
5	14334	16723	3	gain	-	-1	somatic	0	0.083305156393144	0.270107494337179
5	413297	415686	4	gain	-	-1	germline	1	0.0832757054926812	0.27005634947473
5	757313	764480	3	gain	-	-1	germline	1	0.00270656603370792	0.0049735180916346
5	17633209	17645154	1	loss	A	-1	germline	1	0.000248452140545161	0.000184638373824875
5	20832080	20834469	4	gain	-	-1	germline	1	0.0832792391553503	0.270062486484953
5	21448442	21453220	1	loss	A	-1	germline	1	0.0183240176955827	0.048898264597302
5	26792635	26802191	1	loss	A	-1	germline	1	0.00142316150013344	0.00194905948155311
5	42626927	42631705	1	loss	A	-1	germline	1	0.0201976136034076	0.0546167064625451
5	46270152	46277319	1	loss	A	-1	germline	1	0.020747315611625	0.0565753894333636
5	46403936	46411103	1	loss	A	-1	germline	1	0.00385053731112963	0.00936643644926116
5	49600418	49602807	218	gain	-	-1	germline	1	0.0832651052334245	0.270037939054863
5	91202464	91207242	1	loss	A	-1	germline	1	0.0168424959170963	0.04425596726851
5	106384559	106389337	1	loss	A	-1	somatic	0	0.0578543090912229	0.181480087728234
5	112603126	112610293	1	loss	A	-1	somatic	0	0.00650572922626587	0.00980236212275143
5	118050046	118057213	1	loss	A	-1	somatic	0	0.00502743960468965	0.00964605157231879
5	118537402	118544569	1	loss	A	-1	germline	1	0.00558221448394061	0.00959272388033272
5	120044861	120049639	1	loss	A	-1	germline	1	0.0207488603698886	0.0565815093855168
5	135778815	135785982	1	loss	A	-1	germline	1	0.00555532609836077	0.00955897433256736
5	139713498	139715887	2	neutral	AA	100	somatic	0	0.765768608465487	0.882265203177291
5	141175566	141177955	6	gain	-	-1	germline	1	0.0832709941313934	0.27004816695279
5	148227894	148244617	2	neutral	AA	100	somatic	0	0.825192147810443	0.635639350467315
5	149646960	149756854	2	neutral	AA	24.3462	somatic	0	0.728054698317514	0.450864790115775
5	154661471	154907538	2	neutral	AA	66.3434	somatic	0	0.00435199129963919	0.00458728112636952
5	161195386	161216887	2	neutral	AA	54.5684	somatic	0	0.901260862709771	0.996016377577821
5	162781682	162784071	2	neutral	AA	100	germline	1	0.236503504367941	0.477978740278148
5	164525652	164532819	2	neutral	AA	100	somatic	0	0.200410320034224	0.207063093529953
5	167502346	167545348	2	neutral	AA	54.568	germline	1	0.11715729463109	0.215666670879044
5	172492967	172598083	2	neutral	AA	21.4667	somatic	0	0.620123727120063	0.710219211867272
5	177564814	177567203	2	neutral	AA	100	germline	1	0.127737158946684	0.340334249190114
5	178467856	178472634	2	neutral	AA	100	somatic	0	0.805444381369874	0.821808776944546
5	178584917	178587306	7	gain	AAAAAAA	100	germline	1	0.0832704052264146	0.270047144150272
5	180656180	180660958	2	neutral	AA	36.3786	somatic	0	0.206609364629518	0.212593887460774
5	180938082	181052754	2	neutral	AA	29.6614	somatic	0	0.165940676518086	0.0554414751552724
6	296236	382240	3	gain	AAB	0.520811	germline	1	5.65281473307158e-24	0
6	1402343	1426233	2	neutral	AA	27.2839	somatic	0	0.294730441835825	0.705634399177603
6	19040330	19049886	1	loss	A	-1	germline	1	0.00163054710266338	0.00159329431763366
6	32488011	32564459	0	loss	-	-1	germline	1	2.68505434056246e-09	7.77485187342108e-10
6	32564459	32574015	1	loss	A	-1	somatic	0	NA	NA
6	32574015	32578793	3	gain	AAB	1.11411	germline	1	0.014338522535923	0.0366850906653555
6	32578793	32583571	1	loss	A	-1	germline	1	NA	NA
6	32583571	32590738	0	loss	-	-1	germline	1	0.01431572978462	0.0366570830229419
6	32590738	32667186	1	loss	A	-1	germline	1	4.34293428328181e-06	5.83711814883259e-07
6	35787220	35799165	4	gain	AAAB	100	germline	1	0.000107588882274615	9.08510256916184e-05
6	46583111	46685838	2	neutral	AA	36.3786	somatic	0	0.473257150205581	0.268027907351614
6	51201048	51203437	0	loss	-	-1	germline	1	0.0832751165607117	0.270055326649585
6	54063070	54070237	0	loss	-	-1	germline	1	0.0143120115556457	0.0366486843791288
6	60236246	60241024	4	gain	-	-1	germline	1	0.0143101527606397	0.0366388880892415
6	67138067	67173902	2	neutral	AA	100	somatic	0	0.104979583562986	0.289959362355799
6	75088659	75126883	2	neutral	AA	100	somatic	0	0.0559724840320654	0.0617723782095502
6	78256473	78328143	1	loss	A	-1	germline	1	8.26089585643661e-19	0
6	78810721	78817888	1	loss	A	-1	germline	1	0.00559888641665732	0.00864453116174391
6	89733229	89893292	2	neutral	AA	18.1894	somatic	0	0.714510231404183	0.577880917232827
6	113991135	114026970	2	neutral	AA	54.5678	somatic	0	0.286222345760766	0.390931101769254
6	123704809	123728699	2	neutral	AA	100	somatic	0	0.83128077207994	0.906452479471605
6	128931941	129077670	2	neutral	AA	100	somatic	0	0.423225835723714	0.241318281108406
6	153421580	153431136	3	gain	AAB	0.560531	germline	1	0.000772883791523266	0.00166610588215954
6	157308483	157310872	8	gain	AAAAABBB	9.9986	germline	1	0.0832698163248096	0.270046121350582
6	157313261	157315650	5	gain	AAABB	4.91427	germline	1	0.0832745276321161	0.270054303827278
6	157640554	157693112	2	neutral	AA	100	somatic	0	0.103259058192149	0.216068560808791
6	164776497	164781275	1	loss	A	-1	germline	1	0.022908331380849	0.0523179659137589
6	165316411	165318800	0	loss	-	-1	germline	1	0.0832651052334245	0.270037939054858
6	170168470	170170859	3	gain	AAB	6.39131	germline	1	0.0832833619153138	0.270069646458877
7	2575342	2620733	2	neutral	AA	28.505	germline	1	0.104603186434216	0.0338593681739473
7	7683024	7723637	2	neutral	AA	54.5678	somatic	0	0.00126258312695294	0.00449503047102706
7	16816171	16828116	2	neutral	AA	100	somatic	0	0.389594674223224	0.275073210902876
7	20277832	20280221	0	loss	-	-1	germline	1	0.0832780612542982	0.270060440803562
7	20707852	20715019	1	loss	A	-1	somatic	0	0.00558752102759325	0.0095394571992572
7	22370596	22384930	2	neutral	AA	54.5678	germline	1	0.529548931463802	0.81315908527084
7	24050063	24071564	2	neutral	AA	36.4237	somatic	0	0.647598215834099	0.670153119213357
7	28928401	28973792	2	neutral	AA	75.4351	somatic	0	0.00318392915201255	0.0111303093838336
7	33794794	33840185	2	neutral	AA	100	somatic	0	0.240092167368746	0.264878143703693
7	38957423	39124653	2	neutral	AA	36.3786	somatic	0	0.0428430357792775	0.0674227680351313
7	44337451	44605019	2	neutral	AA	21.9212	somatic	0	0.800613563644707	0.492986127398133
7	51525952	51528341	0	loss	-	-1	germline	1	0.083277472308833	0.270059417967111
7	54395141	54397530	0	loss	-	-1	germline	1	0.0832780612542982	0.270060440803562
7	55828541	56019661	2	neutral	AA	42.4993	somatic	0	1.48457572538983e-07	4.42908105791062e-06
7	56693359	56702915	1	loss	A	-1	somatic	0	0.00533376053653027	0.00942453955006439
7	57486507	57496063	3	gain	AAB	1.97777	germline	1	0.000593313595712745	0.00087563590926043
7	57496063	57498452	2	neutral	AA	10.0894	somatic	0	0.0928380312938884	0.286287043893308
7	57930861	57938028	3	gain	AAA	4.35349	germline	1	0.00270320875481463	0.00496321603243588
7	57954751	57983419	2	neutral	AA	1.67494	germline	1	0.133518282181815	0.254314907639567
7	58062256	58067034	4	gain	AABB	9.69364	germline	1	0.0143121974468599	0.0366430862186181
7	61024616	61027005	4	gain	-	-1	germline	1	0.0832762944280245	0.270057372302698
7	61046117	61053284	4	gain	-	-1	germline	1	0.00270112508909461	0.00495935070307407
7	61053284	61058062	3	gain	-	-1	germline	1	0.0143251221051946	0.0366691240156765
7	62300342	62302731	4	gain	-	-1	germline	1	0.0832792391553503	0.270062486484953
7	62336177	62348122	3	gain	AAB	0.488749	germline	1	0.000107749688775604	9.09933942295771e-05
7	62400680	62405458	4	gain	-	-1	germline	1	0.0143094093022673	0.0366366492589802
7	62438904	62455627	3	gain	AAB	3.09645	germline	1	1.72524724810253e-05	7.23721840172331e-05
7	62520130	62541631	2	neutral	AA	4.89965	germline	1	0.584301325355966	0.3550720158799
7	62541631	62544020	0	loss	-	-1	germline	1	0.0832656941080396	0.270038961831925
7	62544020	62570299	2	neutral	AA	7.46809	somatic	0	0.333157050051836	0.582300850029772
7	65224478	65229256	1	loss	A	-1	germline	1	0.0208726369364209	0.0569690360724995
7	70955689	70960467	1	loss	A	-1	germline	1	0.0205730829682268	0.0548975507314182
7	75607072	75671575	2	neutral	AA	29.4172	somatic	0	0.594024478516015	0.850440169831221
7	78860890	78951672	2	neutral	AA	100	germline	1	0.122429115567725	0.0853364479884824
7	81030102	81051603	2	neutral	AA	36.5732	germline	1	0.341418912142739	0.616953129832506
7	82762127	82800351	2	neutral	AA	54.578	somatic	0	0.560511833492541	0.458113890975043
7	86214232	86285902	2	neutral	AA	100	somatic	0	0.506388720862454	0.658930322399933
7	87129219	87210445	2	neutral	AA	54.5678	germline	1	0.00654032852714029	0.00509001583786439
7	97767436	97774603	1	loss	A	-1	germline	1	0.00479384584860096	0.0098499450441264
7	100949584	100956751	3	gain	AAB	1.31968	germline	1	0.00270144686028527	0.00496025994400151
7	100956751	100959140	12	gain	AAAAAAAAAAAB	6.51827	germline	1	0.0832674607521273	0.270042030180101
7	100959140	100968696	4	gain	AABB	0.384453	germline	1	0.000532514345361891	0.000671848350527027
7	100968696	100975863	3	gain	AAB	1.2653	germline	1	0.00270439523650744	0.00496287486291269
7	113035535	113095260	2	neutral	AA	100	somatic	0	0.969166098035878	0.877837972939854
7	126719727	126757951	2	neutral	AA	54.579	somatic	0	0.398072516821131	0.654470366266799
7	141170788	141209012	2	neutral	AA	100	somatic	0	0.832614455084836	0.799768232190446
7	143846468	143851246	4	gain	-	-1	germline	1	0.014309595163666	0.036636929106217
7	152358475	152401477	2	neutral	AA	23.6306	somatic	0	0.622094765087986	0.97084058600009
7	152401477	152408644	10	gain	AAAAAAAABB	3.70984	germline	1	0.00270017691456263	0.00495804393690003
7	152413422	152418200	2	neutral	AA	11.9584	germline	1	0.0994895881110433	0.323529737431216
7	154599357	154608913	1	loss	A	-1	germline	1	0.00121090338056842	0.00159127256964608
7	156704066	156928632	2	neutral	AA	42.3501	somatic	0	0.0117795318745921	0.0216081835645106
7	158144633	158151800	3	gain	AAB	4.2328	germline	1	0.01431572978462	0.0366509238528483
7	159324799	159331966	1	loss	A	-1	germline	1	0.00807032842039455	0.0186938769985523
8	642641	649808	1	loss	A	-1	germline	1	0.00727992365470869	0.0101362652943374
8	4264365	4269143	1	loss	A	-1	germline	1	0.0207842241049866	0.0566174245675332
8	6111062	6115840	1	loss	A	-1	germline	1	0.01448083510263	0.0371003832981465
8	25115557	25132280	1	loss	A	-1	germline	1	7.27070074589487e-06	4.23615266509358e-06
8	25208728	25213506	0	loss	-	-1	germline	1	0.0143071791315791	0.0366335710628101
8	32832027	32834416	1	loss	A	-1	germline	1	0.083296320237261	0.270092150136133
8	40916403	40923570	1	loss	A	-1	germline	1	0.0206510951617838	0.0562676799514613
8	43236122	43238511	6	gain	-	-1	germline	1	0.0832709941313934	0.27004816695279
8	43238511	43240900	8	gain	-	-1	germline	1	0.0832698163248096	0.270046121350582
8	43240900	43243289	5	gain	-	-1	germline	1	0.0832739387068944	0.270053281007794
8	43654197	43656586	4	gain	-	-1	germline	1	0.0832792391553503	0.270062486484953
8	43656586	43658975	6	gain	-	-1	germline	1	0.0832709941313934	0.27004816695279
8	43658975	43661364	3	gain	-	-1	germline	1	0.0833128150090745	0.270120793159419
8	46492329	46497107	1	loss	A	-1	germline	1	0.0216066817262996	0.0567821502194157
8	50118831	50125998	1	loss	A	-1	germline	1	0.00700993329979577	0.00917363722107822
8	53585270	53604382	2	neutral	AA	100	somatic	0	0.698718882417026	0.523939559176383
8	61179901	61263516	2	neutral	AA	100	somatic	0	0.105475941491463	0.11151899096783
8	86297847	86324126	2	neutral	AA	100	somatic	0	0.400290439635934	0.824833887776545
8	95863403	95868181	1	loss	A	-1	germline	1	0.0287366447951267	0.0561516470503182
8	100705906	100796688	2	neutral	AA	13.0755	somatic	0	0.564640886572873	0.262942004789515
8	102048524	102103471	2	neutral	AA	55.0709	germline	1	0.161125945701603	0.361913744106908
8	104545029	104549807	1	loss	A	-1	somatic	0	0.0259770444604718	0.0605631618091736
8	114994515	115049462	2	neutral	AA	36.3786	somatic	0	0.464171018503385	0.770083245695333
8	117514910	117610470	2	neutral	AA	24.126	somatic	0	0.83523772667394	0.5797062207251
8	118085881	118339115	2	neutral	AA	100	somatic	0	0.518076006705702	0.40080818422188
8	139959565	139964343	1	loss	A	-1	germline	1	0.0201846653877358	0.0546226437030471
8	142396345	142527740	2	neutral	AA	8.8439	germline	1	0.0280173004359433	0.0787573391189921
8	144123592	144125981	6	gain	AAAAAB	34.0002	germline	1	0.0832721719514723	0.270050212566308
9	29093242	29098020	1	loss	A	-1	germline	1	0.0207374701343482	0.0549655678315401
9	35911448	35916226	4	gain	-	-1	germline	1	0.0143101527606397	0.0366380485138663
9	40911625	40914014	5	gain	-	-1	germline	1	0.0832751165607117	0.27005532664959
9	40914014	40916403	6	gain	-	-1	germline	1	0.0832709941313934	0.27004816695279
9	40923570	40928348	5	gain	-	-1	germline	1	0.014308944658087	0.0366360895701178
9	64772957	64775346	1	loss	A	-1	germline	1	0.0832933750206863	0.270087035543845
9	68681361	68707640	2	neutral	AA	100	somatic	0	0.605591913938185	0.759534239685419
9	71010636	71013025	2	neutral	AA	100	somatic	0	0.610580107912266	0.796644873355609
9	73132068	73160736	2	neutral	AA	36.3786	somatic	0	0.00245038996042814	0.0133822455618167
9	76909077	76921022	2	neutral	AA	54.5678	somatic	0	0.847367373129515	0.979571946388953
9	78414147	78423703	2	neutral	AA	54.5678	somatic	0	0.478316348053404	0.819257275554733
9	79558478	79656427	2	neutral	AA	100	somatic	0	1.25481669871001e-05	4.65037347820996e-05
9	84066521	84138191	2	neutral	AA	54.6578	somatic	0	0.00919610839073446	0.0461348232388265
9	85700597	85920385	2	neutral	AA	31.8659	somatic	0	0.0167130688019953	0.0809706843873031
9	86830594	86840150	1	loss	A	-1	germline	1	0.00187548351154491	0.00165133393878192
9	88913802	88975916	2	neutral	AA	34.1969	somatic	0	0.239744682973013	0.287853826900736
9	101952964	101962520	1	loss	A	-1	germline	1	0.000963058440915692	0.00133098831848677
9	102612328	102626662	2	neutral	AA	100	somatic	0	0.616176165592855	0.893437552203174
9	103011291	103016069	1	loss	A	-1	germline	1	0.0208927028300785	0.0568009788151296
9	110261906	110266684	1	loss	A	-1	germline	1	0.017071840176492	0.0411312979921813
9	114165532	114175088	2	neutral	AA	36.3786	germline	1	0.0326029415677606	0.0918167114577975
9	119908688	119997081	2	neutral	AA	23.653	somatic	0	0.067279720292165	0.292338660744027
9	127916616	127969174	2	neutral	AA	36.3786	somatic	0	0.00248889015272613	0.00786783102024646
9	128647650	128652428	1	loss	A	-1	germline	1	0.0207155416001389	0.0564563676600079
9	128716931	128805324	2	neutral	AA	22.7693	somatic	0	0.24464291514413	0.126891830722882
9	129424075	129445576	3	gain	AAB	0.348268	germline	1	3.30081122006265e-07	1.29401388826444e-07
9	130162276	130167054	2	neutral	AA	100	somatic	0	0.117757048670876	0.15195137849798
9	131743794	131746183	4	gain	AAAB	31.9446	somatic	0	0.0832792391553503	0.270062486484953
9	133999010	134027678	2	neutral	AA	36.2899	somatic	0	0.0171944684411371	0.0473242559680386
9	135611585	135616363	2	neutral	AA	100	germline	1	0.33087988988933	0.542797731252042
9	135836151	135845707	2	neutral	AA	38.8306	somatic	0	0.403864938403768	0.441295436933301
9	137042596	137157268	2	neutral	AA	13.8511	somatic	0	0.637903128939501	0.418691357502136
9	137326887	137329276	4	gain	AAAA	15.8934	germline	1	0.0832792391553503	0.270062486484953
9	137713905	137718683	3	gain	AAB	25.463	germline	1	0.0143204252656715	0.036659042948784
10	3406714	3471217	2	neutral	AA	19.677	somatic	0	0.819988465461466	0.580421935260785
10	4113858	4159249	2	neutral	AA	12.1262	somatic	0	0.111341521311994	0.118728398695597
10	4247642	4250031	0	loss	-	-1	germline	1	0.0832780612542982	0.270060440803562
10	4665717	4668106	0	loss	-	-1	germline	1	0.0832780612542982	0.270060440803562
10	5079014	5119627	2	neutral	AA	100	somatic	0	0.183338016688319	0.423484555002731
10	7386788	7408289	2	neutral	AA	36.3787	somatic	0	0.725527333557664	0.822691135521044
10	12095507	12262737	2	neutral	AA	100	somatic	0	0.876787661190243	0.935366549884296
10	17549594	17594985	2	neutral	AA	10.809	somatic	0	0.277175470162601	0.549063172931939
10	20562123	20566901	1	loss	A	-1	somatic	0	0.0169114818098488	0.0441995752906205
10	22040914	22114973	2	neutral	AA	54.5692	somatic	0	0.0228219047489765	0.118878270640739
10	26570458	26658851	2	neutral	AA	0.350611	somatic	0	0.00454946226342196	0.00899262518150046
10	27492612	27552337	2	neutral	AA	100	somatic	0	0.252757931577179	0.512267722184677
10	30956662	30963829	1	loss	A	-1	somatic	0	0.00702121551119379	0.009501867588668
10	38484401	38525014	3	gain	AAB	0.493106	somatic	0	1.35581993852722e-11	5.13100673060762e-12
10	38525014	38529792	15	gain	AAAAAAAAAAAAAAB	1.27737	germline	1	0.0143071791315791	0.0366335710628116
10	38575183	38577572	2	neutral	AA	54.7918	somatic	0	0.0905510954461293	0.282475126542884
10	38577572	38582350	4	gain	AAAA	3.94301	germline	1	0.0143100598264797	0.0366386082289127
10	39258437	39267993	1	loss	A	-1	germline	1	0.000598357005232255	0.000822875041657123
10	39342052	39361164	1	loss	A	-1	germline	1	5.22431634492744e-05	4.74009221470562e-05
10	39545117	39547506	4	gain	-	-1	germline	1	0.0832804170698984	0.270064532177649
10	39547506	39549895	5	gain	-	-1	germline	1	0.0832739387068944	0.270053281007794
10	41833779	41843335	2	neutral	AA	11.796	somatic	0	0.0210825947348752	0.118355361515157
10	41857669	41915005	28	gain	AAAAAAAAAAAAAAAAAAABBBBBBBBB	36.0123	germline	1	9.63629338667392e-07	2.25125371677848e-07
10	42299634	42323524	3	gain	AAA	5.96072	somatic	0	6.35215659071834e-07	8.2696485137479e-06
10	46513830	46561610	4	gain	AAAB	0.644719	germline	1	2.01042182097846e-13	4.44089209850063e-16
10	53508822	53566158	2	neutral	AA	34.3167	somatic	0	0.446279983116788	0.317172963771188
10	54686599	54710489	4	gain	AABB	100	germline	1	4.32817949730106e-08	4.13192224879566e-09
10	59880285	59882674	3	gain	AAB	13.1304	somatic	0	0.0832886628496288	0.270078852343238
10	61777151	61801041	2	neutral	AA	100	somatic	0	0.44829365886131	0.426108272478637
10	65546993	65556549	1	loss	A	-1	germline	1	0.00133108834939759	0.00159023964337934
10	67725761	67728150	0	loss	-	-1	germline	1	0.0832680496402373	0.270043052968474
10	70360828	70365606	2	neutral	AA	100	somatic	0	0.174424329598765	0.211161429526263
10	74446018	74460352	2	neutral	AA	100	somatic	0	0.261751187122716	0.254160937610235
10	97289636	97294414	2	neutral	AA	100	somatic	0	0.332421663205195	0.572127227565424
10	118262667	118284168	2	neutral	AA	18.3864	somatic	0	0.125091383274464	0.110244487503613
10	120536995	120596720	2	neutral	AA	21.8404	somatic	0	0.0285647354999086	0.0834232931793452
10	121604878	121609656	2	neutral	AA	100	somatic	0	0.710946419290586	0.799444857318517
10	126805731	126843955	2	neutral	AA	100	germline	1	0.632849693667693	0.658335607620497
10	128463697	128466086	6	gain	AAABBB	83.5297	germline	1	0.0832704052264146	0.270047144150272
10	129242511	129249678	2	neutral	AA	27.3154	germline	1	0.656855037647693	0.340409391443142
10	132362545	132364934	4	gain	AAAB	18.364	germline	1	0.0832757054926812	0.27005634947473
10	132364934	132405547	2	neutral	AA	24.7609	somatic	0	0.193349088497354	0.468372663035121
10	133497320	133518821	2	neutral	AA	100	somatic	0	0.843788944594535	0.921739790543424
11	4947619	4954786	1	loss	A	-1	germline	1	0.00508827049261563	0.00758333042152903
11	9670672	9675450	1	loss	A	-1	somatic	0	0.024859476723303	0.0576384965427058
11	11524536	11562760	2	neutral	AA	8.112	germline	1	0.11844725170801	0.13249203779885
11	17219912	17365641	2	neutral	AA	100	somatic	0	0.48848291997263	0.657037082453481
11	18923269	18942381	3	gain	AAB	2.19863	germline	1	9.66282206364764e-07	2.25910856466172e-07
11	20822524	20829691	1	loss	A	-1	somatic	0	0.00613766551870121	0.00996751073965763
11	22117362	22432710	3	gain	AAB	0.330507	germline	1	8.92097689865643e-83	0
11	25055832	25060610	3	gain	AAB	9.33147	somatic	0	0.0143901801256062	0.0368670343277044
11	27282380	27287158	2	neutral	AA	100	somatic	0	0.842264437482847	0.924349003031857
11	28985737	28992904	1	loss	A	-1	germline	1	0.00502209511570803	0.00982586255524043
11	29207914	29212692	2	neutral	AA	100	somatic	0	0.752135022023348	0.950378667725619
11	33030314	33058982	2	neutral	AA	27.9936	somatic	0	0.895552960599345	0.212813586432896
11	45407723	45410112	0	loss	-	-1	germline	1	0.083277472308833	0.270059417967111
11	45754128	45849688	2	neutral	AA	36.4324	somatic	0	0.651329554211655	0.515854866480869
11	46253429	46305987	2	neutral	AA	100	somatic	0	0.0945225265152436	0.0648109979347373
11	46800510	46929516	2	neutral	AA	20.0621	somatic	0	0.633368307856505	0.762648447510967
11	47034632	47041799	1	loss	A	-1	somatic	0	0.0247107428226371	0.0565492840298162
11	48823993	48828771	3	gain	AAB	14.3544	germline	1	0.0143227037607112	0.0366652033125987
11	50173778	50178556	1	loss	A	-1	germline	1	0.0212894023477673	0.058275771474977
11	54755880	54777381	1	loss	A	-1	germline	1	5.32178197565129e-06	1.18237853130587e-06
11	55183511	55216957	1	loss	A	-1	germline	1	2.21327676314011e-08	1.11154452309137e-09
11	58864960	58869738	1	loss	A	-1	somatic	0	0.0219571289433215	0.0571935023678295
11	61101064	61160789	2	neutral	AA	27.285	germline	1	0.561199058489958	0.573959704776845
11	61703092	61741316	2	neutral	AA	100	somatic	0	0.11764382302929	0.104330140761394
11	63425561	63430339	3	gain	-	-1	germline	1	0.0143168454194616	0.0366486843791304
11	65874286	65876675	1	loss	A	-1	somatic	0	0.083698838957964	0.270790443080543
11	67603922	67632590	2	neutral	AA	100	somatic	0	0.158262709980994	0.347440280163023
11	69591570	69596348	2	neutral	AA	100	somatic	0	0.588640685452206	0.878266394208725
11	70136262	70138651	0	loss	-	-1	germline	1	0.0832680496402373	0.270043052968474
11	71378542	71951902	2	neutral	AA	1.4317	somatic	0	0.361533371203699	0.44536672145019
11	73638536	73769931	2	neutral	AA	100	somatic	0	0.54514302810793	0.240430849282334
11	73977774	74140226	2	neutral	AA	73.5046	somatic	0	0.250527329496083	0.477833461370995
11	74312234	74317012	1	loss	A	-1	germline	1	0.0205983335435633	0.0560730565823607
11	80678919	80686086	2	neutral	AA	100	somatic	0	0.743733204937016	0.852672350823781
11	80884373	80903485	2	neutral	AA	100	somatic	0	0.248682325450954	0.174822686948463
11	88005982	88053762	2	neutral	AA	46.8635	somatic	0	0.385245598275626	0.738168349231402
11	105075387	105092110	2	neutral	AA	54.5684	somatic	0	0.862042429284966	0.97012956860999
11	114631387	114640943	1	loss	A	-1	somatic	0	0.0246440644472099	0.0627030209586436
11	116929605	117261676	2	neutral	AA	35.025	somatic	0	0.12322414364241	0.024659057382489
11	122156737	122240352	2	neutral	AA	22.544	somatic	0	0.0594407609396172	0.155642896145686
11	124146774	124280558	2	neutral	AA	19.1892	somatic	0	0.394307564547652	0.298535459249542
11	124904087	124908865	1	loss	A	-1	somatic	0	0.0274692954743112	0.0566913571693529
11	125845353	125852520	2	neutral	AA	54.5679	somatic	0	0.853941419547805	0.9403722197043
11	126046029	126074697	2	neutral	AA	16.0027	germline	1	0.492117818397182	0.959487349460123
11	128948664	129058558	2	neutral	AA	100	somatic	0	0.0368451508434219	0.0832873760451247
11	131263605	131268383	1	loss	A	-1	somatic	0	0.0230015966765513	0.0569214448797011
11	131340053	131344831	3	gain	AAA	18.0465	somatic	0	0.0204366240560796	0.0555753673908019
11	132054364	132059142	3	gain	AAB	18.959	germline	1	0.0143192628913872	0.0366531634462957
12	757313	766869	1	loss	A	-1	germline	1	0.00185656876000953	0.00162026226038325
12	2255216	2257605	6	gain	-	-1	germline	1	0.0832709941313934	0.27004816695279
12	33152153	33154542	0	loss	-	-1	germline	1	0.0832651052334245	0.270037939054858
12	37605249	37753367	2	neutral	AA	1.00836	somatic	0	0.00168798371586459	0.0166724871840417
12	39709958	39714736	1	loss	A	-1	germline	1	0.0264880612707323	0.0564775475521191
12	48002177	48014122	2	neutral	AA	54.5873	somatic	0	0.881400449837369	0.983400641596874
12	48312747	48317525	1	loss	A	-1	germline	1	0.0210131912819988	0.0574121172248158
12	48673486	48678264	2	neutral	AA	54.5678	somatic	0	0.647700024642289	0.698584580342467
12	58571113	58575891	2	neutral	AA	100	somatic	0	0.444524255865249	0.890624990659566
12	63480508	63506787	2	neutral	AA	100	somatic	0	0.111278259067405	0.182026406225391
12	63506787	63946363	2	neutral	AA	18.748	somatic	0	0.213649722973307	0.456856053427581
12	71961458	71966236	1	loss	A	-1	somatic	0	0.0235386762235081	0.058104825461565
12	74534411	74570246	2	neutral	AA	27.1502	somatic	0	0.442520260175847	0.682816614664312
12	81744413	81751580	1	loss	A	-1	germline	1	0.00750777826583635	0.0124902003979928
12	94769241	94778797	2	neutral	AA	100	somatic	0	0.958623863357233	0.912682161184269
12	94960361	95242263	2	neutral	AA	100	somatic	0	0.706597600012409	0.573541239473997
12	99900813	99962927	2	neutral	AA	100	somatic	0	0.0391508240379138	0.049213646849925
12	102414041	102440320	2	neutral	AA	35.081	somatic	0	0.102659190223349	0.124170165360201
12	102636218	102688776	2	neutral	AA	54.5678	somatic	0	0.185388493590551	0.41258995645288
12	111537632	111542410	1	loss	A	-1	somatic	0	0.0246142556721434	0.0566182410493442
12	120926402	120928791	0	loss	-	-1	germline	1	0.0832745276321161	0.270054303827273
12	121958450	121989507	2	neutral	AA	27.2842	somatic	0	0.467519127138922	0.603226731106221
12	130644854	130647243	4	gain	AAAA	21.8655	germline	1	0.0832762944280245	0.270057372302698
12	131906246	131915802	2	neutral	AA	54.5678	somatic	0	0.413673900184728	0.117847486653666
12	133024298	133031465	2	neutral	AA	100	somatic	0	0.446143254146069	0.726582468549601
13	22019413	22024191	0	loss	-	-1	germline	1	0.0143356367873759	0.0367190049434524
13	23058628	23063406	1	loss	A	-1	germline	1	0.0206676393881627	0.0562749896119313
13	32382895	32590738	3	gain	-	-1	germline	1	5.47484080279895e-58	0
13	33560672	33570228	1	loss	A	-1	germline	1	0.00134110365567753	0.00173298081866957
13	37497744	37512078	1	loss	A	-1	germline	1	7.44803974268742e-05	4.62589137799618e-05
13	38482012	38486790	1	loss	A	-1	germline	1	0.0143429918026678	0.0367041465545426
13	45422057	45426835	1	loss	A	-1	somatic	0	0.0238650155344795	0.049800111053693
13	50493904	50501071	1	loss	A	-1	germline	1	0.0158742889288005	0.0413911434941665
13	63028987	63043321	3	gain	-	-1	germline	1	0.000107773240447414	9.10524872227425e-05
13	63057655	63064822	3	gain	-	-1	germline	1	0.00270346296084302	0.00496372782703058
13	63064822	63067211	4	gain	-	-1	germline	1	0.0832757054926812	0.27005634947473
13	69828081	69832859	1	loss	A	-1	somatic	0	0.0244455575129233	0.0557576253203511
13	71901733	71906511	1	loss	A	-1	somatic	0	0.0267298456922603	0.0578095110296332
13	88082430	88096764	2	neutral	AA	100	somatic	0	0.0512858262464971	0.13462268194862
13	88263994	88426446	2	neutral	AA	100	somatic	0	0.144342936778912	0.130097104529712
13	89463272	89501496	2	neutral	AA	36.5692	somatic	0	0.345155482897888	0.438675897333245
13	90211029	90213418	1	loss	A	-1	germline	1	0.0834136083663931	0.270295768310866
13	90342424	90469041	2	neutral	AA	30.3892	somatic	0	0.279612813759118	0.637424732993728
13	90934896	91567981	2	neutral	AA	21.8363	somatic	0	0.00160987845247768	0.00487297658674679
13	93008548	93051550	2	neutral	AA	100	somatic	0	0.110624806477235	0.117249654527019
13	93366898	93395566	2	neutral	AA	36.4085	somatic	0	0.24291725094975	0.526504296281637
13	97010123	97067459	2	neutral	AA	100	somatic	0	0.592596183891324	0.112251638597758
13	97741157	97750713	2	neutral	AA	54.8373	somatic	0	0.204230324003158	0.364778439824427
13	98539083	98541472	2	neutral	AA	100	somatic	0	0.4605335610551	0.689498381304496
13	98601197	98605975	0	loss	-	-1	germline	1	0.0143121045009865	0.0366495241677426
13	99458848	99501850	2	neutral	AA	22.1289	somatic	0	0.0499139083351948	0.0626252827699708
13	99778974	99802864	2	neutral	AA	71.4876	somatic	0	0.510769354236296	0.639217621685374
13	101577891	101585058	2	neutral	AA	100	germline	1	0.780623063174915	0.589735473415316
13	103694545	103713657	2	neutral	AA	54.5678	somatic	0	0.81480426521011	0.947411211558036
13	105495851	105541242	2	neutral	AA	100	germline	1	0.563273547979044	0.662532815123882
13	105675026	105713250	2	neutral	AA	100	somatic	0	0.631291646189354	0.572271675418172
13	106692740	106702296	2	neutral	AA	54.5679	somatic	0	0.80249784489035	0.957153524063693
13	107325825	107330603	2	neutral	AA	100	somatic	0	0.465909895342065	0.699761585106742
13	108362651	108460600	2	neutral	AA	21.9	somatic	0	0.879421596972405	0.558598010240489
13	109022015	109024404	1	loss	A	-1	germline	1	0.0832886628496288	0.270078852343232
13	113064203	113085704	2	neutral	AA	18.56	somatic	0	0.770411401371552	0.473043283040568
13	113262490	113264879	3	gain	AAA	100	somatic	0	0.0832898408721478	0.270080898126424
13	114124919	114296927	2	neutral	AA	49.8266	somatic	0	0.586182032489358	0.797611146691146
14	0	16092304	3	gain	AAB	-1	somatic	0	NA	NA
14	16092304	16094693	15	gain	-	-1	germline	1	0.0832674607521273	0.270042030180101
14	16094693	19728362	3	gain	AAB	-1	somatic	0	0.923308814426833	0.949136355601589
14	19728362	19955317	3	gain	AAB	0.389104	germline	1	1.62438140066987e-30	0
14	19955317	19957706	3	gain	AAB	15.477	germline	1	0.0835227650151899	0.270485162045121
14	21453220	21472332	2	neutral	AA	27.3289	somatic	0	0.239536195087044	0.261185339097185
14	21484277	21486666	0	loss	-	-1	germline	1	0.0832674607521273	0.270042030180095
14	21560725	21563114	1	loss	A	-1	somatic	0	0.0849553484898865	0.272961247604291
14	24398857	24408413	2	neutral	AA	100	somatic	0	0.354094457357779	0.487885256520776
14	33101984	33116318	2	neutral	AA	100	somatic	0	0.136719513457306	0.0652965786770089
14	34346653	34351431	1	loss	A	-1	germline	1	0.0212824258144696	0.0578802021358465
14	37299457	37301846	1	loss	A	-1	germline	1	0.0833057454971987	0.270108517306532
14	38448566	38484401	2	neutral	AA	100	germline	1	0.296292614767956	0.374000309060434
14	40144756	40149534	1	loss	A	-1	germline	1	0.0249052284275705	0.0564616619928245
14	41790777	41795555	2	neutral	AA	100	somatic	0	0.895538525370641	0.929148380187394
14	44915589	44917978	1	loss	A	-1	somatic	0	0.0960574426360071	0.291590268864294
14	47999788	48023678	2	neutral	AA	36.3786	somatic	0	0.0494606951242424	0.0513286622327981
14	59748890	59751279	1	loss	A	-1	germline	1	0.0832969092906989	0.270093173063074
14	59985401	60095295	2	neutral	AA	34.853	somatic	0	0.411852713741942	0.266885075842996
14	61320852	61354298	2	neutral	AA	100	somatic	0	0.401349579981892	0.433886698400313
14	64639173	64658285	2	neutral	AA	36.3786	somatic	0	0.896673980623462	0.958670664259439
14	68093667	68155781	2	neutral	AA	54.5678	somatic	0	0.142833200915244	0.0560947958482148
14	71801395	71858731	2	neutral	AA	36.5122	somatic	0	0.590562986926089	0.842246510649886
14	72759384	72802386	2	neutral	AA	16.5214	somatic	0	0.835415161301477	0.787102799011981
14	73533420	73535809	1	loss	A	-1	somatic	0	0.085977183607215	0.274717757190448
14	79639704	79649260	1	loss	A	-1	germline	1	0.00123287813700608	0.00159992766055317
14	82031093	82038260	1	loss	A	-1	somatic	0	0.00649328062023099	0.00987184590320422
14	82673734	82676123	1	loss	A	-1	somatic	0	0.0838935782731724	0.271127773323085
14	89286486	89339044	2	neutral	AA	12.263	somatic	0	0.265857757926364	0.412205728448432
14	89974518	89993630	2	neutral	AA	36.3786	somatic	0	0.501736185846305	0.585493187905815
14	91293246	92191510	2	neutral	AA	33.1673	somatic	0	0.335793213075927	0.17335133783104
14	95567167	95624503	2	neutral	AA	100	somatic	0	0.098410498734154	0.0513332205027632
14	97786548	97791326	1	loss	A	-1	somatic	0	0.0300040266320685	0.0576957296403363
14	99927092	99929481	10	gain	AAAAAAABBB	100	germline	1	0.0832680496402373	0.270043052968479
14	100249607	100273497	2	neutral	AA	100	germline	1	0.608268322631473	0.948761517220253
14	104819764	104905768	2	neutral	AA	17.6785	somatic	0	4.73806977640376e-05	4.62292123789565e-05
15	0	17078961	6	gain	AAAAAB	-1	somatic	0	NA	NA
15	17078961	17081350	8	gain	-	-1	germline	1	0.0832698163248096	0.270046121350582
15	17081350	17083739	14	gain	-	-1	germline	1	0.0832674607521273	0.270042030180101
15	17083739	20339946	6	gain	AAAAAB	-1	somatic	0	0.815043938822052	0.946840428578686
15	20339946	20342335	11	gain	AAAAAAAABBB	39.4251	germline	1	0.0832680496402373	0.270043052968479
15	20342335	20344724	5	gain	AAAAB	26.6687	germline	1	0.0832751165607117	0.27005532664959
15	20344724	20397282	6	gain	AAAAAB	9.39819	germline	1	2.03615920534926e-07	3.04793356109556e-08
15	20645738	20669628	5	gain	AAAAB	6.2062	germline	1	2.03648511007438e-07	3.04824787633606e-08
15	23304695	23424145	1	loss	A	-1	germline	1	4.03465337430513e-08	4.38981007100381e-09
15	25569467	25617247	2	neutral	AA	36.5263	somatic	0	0.940369194257786	0.412241505520081
15	25868092	25872870	2	neutral	AA	54.5678	somatic	0	0.124049931264264	0.263852735763527
15	39459113	39509282	2	neutral	AA	100	somatic	0	0.0208205576538661	0.033936766781814
15	48422641	48453698	2	neutral	AA	100	somatic	0	0.172832363237429	0.362368227670319
15	54043958	54072626	2	neutral	AA	36.8738	somatic	0	0.155576311886479	0.424837719206567
15	54548037	54617318	2	neutral	AA	100	somatic	0	0.0116756804427216	0.0215349038324404
15	65286592	65367818	2	neutral	AA	100	somatic	0	0.0691285230040462	0.0514841618935276
15	65523103	65527881	1	loss	A	-1	somatic	0	0.0286567626325749	0.0557834161871811
15	67102232	67111788	2	neutral	AA	100	germline	1	0.130922642834029	0.104386640718671
15	68805589	68913094	2	neutral	AA	15.591	germline	1	0.680739632962056	0.840855474779853
15	69030155	69049267	2	neutral	AA	100	somatic	0	0.862818533072785	0.898848577967869
15	69328780	69390894	2	neutral	AA	14.4777	somatic	0	0.54582298280091	0.918374121074885
15	71416766	71421544	1	loss	A	-1	germline	1	0.0213992482267283	0.0467092034958595
15	72725938	72735494	2	neutral	AA	100	somatic	0	0.0696776594460473	0.0516538877357899
15	73468917	73550143	2	neutral	AA	100	somatic	0	0.516181418410996	0.90971087537966
15	76591340	76603285	1	loss	A	-1	germline	1	0.00139759971358813	0.00161413213563943
15	77038083	77040472	0	loss	-	-1	germline	1	0.0832651052334245	0.270037939054858
15	77494382	77508716	2	neutral	AA	54.5679	somatic	0	0.103812415047882	0.0644761384157746
15	85323135	85361359	2	neutral	AA	54.5678	somatic	0	0.539732042702524	0.297748144890517
15	89229150	89343822	2	neutral	AA	100	germline	1	0.911765442756586	0.646866234845129
15	96238476	96312535	2	neutral	AA	100	somatic	0	0.741372856231284	0.836190294742294
15	98154454	98166399	2	neutral	AA	100	germline	1	0.0163686312297764	0.0301089914845355
15	99470793	99480349	2	neutral	AA	55.0709	somatic	0	0.331908288960267	0.474854267832736
15	99876923	99881701	1	loss	A	-1	germline	1	0.0180578481412185	0.0478821906530514
16	33446	40613	2	neutral	AA	36.3786	germline	1	0.115158256451524	0.151024429671215
16	845706	848095	4	gain	AABB	71.9847	germline	1	0.0832757054926812	0.27005634947473
16	1024881	1027270	4	gain	AAAA	9.37579	germline	1	0.0832810060322334	0.270065555028239
16	2518006	2546674	2	neutral	AA	36.3786	somatic	0	0.000886830037801137	0.00832661857700345
16	5172185	5179352	2	neutral	AA	54.8546	somatic	0	0.486020751631149	0.479758642696183
16	7439346	7441735	2	neutral	AA	100	somatic	0	0.261572406335762	0.505499833080357
16	9037587	9039976	2	neutral	AA	100	somatic	0	0.624138615228321	0.805144917685498
16	9974075	10040967	2	neutral	AA	69.2155	germline	1	0.464725270827137	0.383352598466143
16	11493479	11495868	1	loss	A	-1	somatic	0	0.124346422282917	0.335377888840575
16	13774974	13806031	2	neutral	AA	41.3673	somatic	0	0.582974645498845	0.462815449241767
16	21558336	21582226	4	gain	AABB	3.92359	germline	1	4.32677316688933e-08	4.12829437301809e-09
16	22415987	22418376	2	neutral	AA	100	germline	1	0.626075577865958	0.806348191948336
16	22614274	22685944	4	gain	AAAB	2.86942	somatic	0	1.09062555029482e-20	0
16	22685944	22700278	4	gain	AABB	4.43732	germline	1	2.21123129185497e-05	1.23016668637232e-05
16	23144632	23185245	2	neutral	AA	100	germline	1	0.0882049865412225	0.141374288372669
16	25235007	25328178	2	neutral	AA	72.4912	somatic	0	0.992577861720327	0.684571707036919
16	25328178	25332956	1	loss	A	-1	germline	1	0.0151929598927044	0.0393077863246117
16	25466740	25476296	2	neutral	AA	100	somatic	0	0.197167485171527	0.388139274819373
16	28054027	28235591	2	neutral	AA	25.8185	somatic	0	0.0829586697492644	0.0553373364668559
16	28570051	28584385	2	neutral	AA	100	somatic	0	0.340896401410715	0.387543886333335
16	28828063	28880621	2	neutral	AA	100	somatic	0	0.382022967906233	0.444702623866428
16	34062362	34064751	26	gain	AAAAAAAAAAAAAAAAABBBBBBBBB	17.6365	germline	1	0.0832674607521273	0.270042030180101
16	34069529	34083863	2	neutral	AA	19.051	germline	1	0.00518027721388784	0.0262455085649406
16	34083863	34086252	12	gain	AAAAAAAAAAAA	24.1732	germline	1	0.0832674607521273	0.270042030180101
16	34086252	34095808	2	neutral	AA	63.1273	somatic	0	0.0024281447391969	0.0054776456019584
16	34095808	34098197	10	gain	AAAAAAABBB	6.087	germline	1	0.083268638531721	0.270044075759686
16	34098197	34100586	4	gain	AABB	100	germline	1	0.0832757054926812	0.27005634947473
16	34100586	34160311	2	neutral	AA	5.65094	germline	1	0.954456711332552	0.98714935226692
16	34160311	34191368	2	neutral	AA	-1	somatic	0	0.014313684653249	0.0366489643067976
16	34191368	34958237	2	neutral	AA	0.64721	somatic	0	1.77163256231555e-18	2.25375273998907e-14
16	35980729	36088234	2	neutral	AA	10.3467	somatic	0	0.431081149566974	0.765822798707797
16	36121680	36124069	3	gain	-	-1	germline	1	0.0832892518592012	0.270079875233417
16	36124069	36126458	6	gain	-	-1	germline	1	0.0832704052264146	0.270047144150272
16	48475199	48477588	0	loss	-	-1	germline	1	0.0832651052334245	0.270037939054858
16	55764038	55787928	1	loss	A	-1	germline	1	6.59099620000783e-05	3.47618073919254e-05
16	58967687	59142084	2	neutral	AA	100	somatic	0	0.0607607932319177	0.00520485651866565
16	65320038	65324816	1	loss	A	-1	germline	1	0.0233006703276463	0.0566929919756846
16	70150596	70162541	3	gain	AAB	3.58283	germline	1	0.000107751651229428	9.09690724117951e-05
16	74109169	74111558	1	loss	A	-1	germline	1	0.0833540635144832	0.270192410417346
16	74455574	74563079	2	neutral	AA	54.5696	somatic	0	0.00246655743732519	0.0131095343203362
16	76505336	76510114	1	loss	A	-1	germline	1	0.0195275500209212	0.0514711308893856
16	78337699	78352033	1	loss	A	-1	germline	1	7.64335383507796e-05	4.774285791731e-05
17	1263781	1266170	2	neutral	AA	100	somatic	0	0.674055431507688	0.83474463618929
17	2919358	2931303	2	neutral	AA	14.5298	germline	1	0.047507422195492	0.114869954033751
17	3435382	3464050	2	neutral	AA	54.5883	germline	1	0.944634551436421	0.980224481264439
17	7800085	7814419	2	neutral	AA	100	somatic	0	0.598770142737039	0.883961010420121
17	10298979	10310924	2	neutral	AA	57.6557	somatic	0	0.385403906126319	0.644811423589495
17	11691766	11729990	2	neutral	AA	36.5474	germline	1	0.000363121827331875	0.000343209961515156
17	13156223	13172946	2	neutral	AA	79.9252	somatic	0	0.95166009885411	0.873582325571616
17	13340176	13349732	2	neutral	AA	100	somatic	0	0.339067735256224	0.399375134007905
17	13521740	13540852	2	neutral	AA	100	somatic	0	0.146909399025174	0.120986773140272
17	14549010	14565733	2	neutral	AA	27.284	somatic	0	0.686538178936685	0.856209208963133
17	15944186	15948964	2	neutral	AA	100	somatic	0	0.794187173466835	0.893004937851615
17	16168752	16230866	2	neutral	AA	100	somatic	0	0.869153276236356	0.927750710747601
17	16818560	16820949	4	gain	AABB	65.3778	germline	1	0.0832810060322334	0.270065555028239
17	21290768	21305102	4	gain	AABB	0.210632	germline	1	2.21113813148905e-05	1.23005393393161e-05
17	21675397	21854572	4	gain	-	-1	germline	1	2.46898416568924e-07	9.14282187736148e-08
17	21854572	21859350	5	gain	-	-1	germline	1	0.014308851730848	0.0366358097284918
17	21859350	21897574	3	gain	-	-1	somatic	0	4.99815977235166e-12	7.68274333040608e-14
17	21966855	21969244	5	gain	-	-1	germline	1	0.0832727608665725	0.270051235377309
17	21976411	21981189	18	gain	-	-1	germline	1	0.0143068074662752	0.0366324517748552
17	22138863	22143641	4	gain	AAAB	8.01342	germline	1	0.0143098739597571	0.0366380485138663
17	22143641	22157975	6	gain	AAAABB	0.332403	germline	1	2.21024664267953e-05	1.22937762725428e-05
17	22157975	22160364	3	gain	AAB	5.39486	germline	1	0.0832933750206863	0.270087035543851
17	26783079	26809358	3	gain	-	-1	germline	1	4.61688853799164e-08	5.9405730334916e-09
17	26809358	26826081	4	gain	-	-1	germline	1	2.21173708474704e-05	1.23056139791355e-05
17	26826081	26842804	3	gain	-	-1	somatic	0	5.16221982848634e-06	2.75437672458967e-06
17	26842804	26847582	1	loss	A	-1	germline	1	0.0314037201223812	0.0675590700495884
17	26864305	26869083	5	gain	-	-1	germline	1	0.0143085729523254	0.0366360895701178
17	26869083	26878639	3	gain	-	-1	somatic	0	0.000536949436138362	0.000683988750895703
17	26935975	26940753	16	gain	AAAAAAAAAAABBBBB	2.3013	germline	1	0.0143068074662752	0.0366324517748552
17	31135837	31207507	2	neutral	AA	54.6862	somatic	0	0.919528683981827	0.302964477459411
17	32289724	32313614	2	neutral	AA	54.5685	somatic	0	0.331456151788512	0.637392681048651
17	33030314	33051815	2	neutral	AA	100	germline	1	0.262811258020866	0.289511680370573
17	35123078	35137412	2	neutral	AA	54.5679	somatic	0	0.361568259901227	0.283600988475892
17	35529208	35682104	2	neutral	AA	12.8045	somatic	0	0.61231791728103	0.53332962592607
17	39621565	39626343	2	neutral	AA	54.5678	somatic	0	0.177440247606533	0.416755840858014
17	41587712	41599657	2	neutral	AA	20.8389	somatic	0	0.00775428466068799	0.00865457349455068
17	41838557	41905449	2	neutral	AA	36.4306	somatic	0	0.337170611867167	0.470991968122916
17	51234494	52648782	2	neutral	AA	8.52326	somatic	0	0.00267619342611117	0.00451277951170725
17	52725230	64225876	2	neutral	AA	1.8948	somatic	0	6.45427605663566e-05	4.69846384021366e-13
17	64409829	66796440	2	neutral	AA	5.97821	somatic	0	0.0422585117064488	0.0079649940308063
17	66796440	66798829	5	gain	AAABB	100	germline	1	0.0832727608665725	0.270051235377309
17	66798829	66801218	2	neutral	AA	-1	germline	1	NA	NA
17	66801218	68624025	2	neutral	AA	10.096	somatic	0	0.632876456663695	0.0239060792939771
17	68626414	69018210	2	neutral	AA	18.1898	germline	1	0.00241541994583649	0.00467643578525057
17	69144827	71051249	2	neutral	AA	100	germline	1	0.00494469066386553	0.0154773904162033
17	75406396	75454176	2	neutral	AA	20.7047	germline	1	0.0254669160604472	0.049557934358848
17	76498169	76536393	2	neutral	AA	10.7304	germline	1	0.886035294537727	0.665078552961417
17	77181423	77217258	2	neutral	AA	54.5678	somatic	0	0.605262221087139	0.913855719327714
17	79505920	79520254	2	neutral	AA	100	germline	1	0.722856847071585	0.857145915102314
17	82585341	82587730	4	gain	AABB	77.3444	somatic	0	0.0832815949979425	0.270066577881657
17	82676123	82692846	2	neutral	AA	56.4875	somatic	0	0.803655510549331	0.994678272519462
18	549470	554248	2	neutral	AA	57.5617	somatic	0	0.254639159907365	0.555496885121098
18	3772231	3788954	2	neutral	AA	100	somatic	0	0.289651601878087	0.690599275885931
18	5305969	5308358	1	loss	A	-1	germline	1	0.0833340264605405	0.270157623161362
18	9656338	9696951	2	neutral	AA	100	somatic	0	0.0964604732463117	0.265828254847879
18	9835513	9845069	2	neutral	AA	69.74	somatic	0	0.612902490902999	0.981502420897711
18	25801200	25848980	2	neutral	AA	100	germline	1	0.41052819863534	0.500480470492115
18	28137642	28180644	2	neutral	AA	17.8137	somatic	0	0.569157002142087	0.445782000024434
18	29594932	29597321	1	loss	A	-1	germline	1	0.0947799001490935	0.289494190438645
18	31986321	31998266	2	neutral	AA	100	somatic	0	0.994026797000476	0.984384318876941
18	35488595	35555487	2	neutral	AA	54.8372	somatic	0	0.117391964132334	0.451352542324762
18	37595693	37834593	2	neutral	AA	7.26501	somatic	0	0.17073542848669	0.095411081420168
18	39688457	39853298	2	neutral	AA	100	somatic	0	0.0794413414818294	0.0204523312513776
18	40679892	40687059	1	loss	A	-1	germline	1	0.00632966456233048	0.00910377855643096
18	41284309	41289087	0	loss	-	-1	germline	1	0.0143114538947818	0.0366464450251354
18	42189740	42211241	2	neutral	AA	100	germline	1	0.239131348903095	0.251937633585451
18	44358952	44361341	1	loss	A	-1	somatic	0	0.0941277261055009	0.288419085290967
18	47369092	47388204	2	neutral	AA	100	somatic	0	0.207730230264062	0.118514309535872
18	51146101	51179547	2	neutral	AA	11.0579	germline	1	0.146694700430566	0.106006676675468
18	51449504	51451893	1	loss	A	-1	germline	1	0.108524312629205	0.311467910960273
18	52283265	52297599	2	neutral	AA	100	germline	1	0.139952630454281	0.122249918365514
18	56260950	56263339	1	loss	A	-1	germline	1	0.0891820317364671	0.280166706424652
18	56609744	56614522	2	neutral	AA	100	somatic	0	0.923392423199556	0.832897204856212
18	57278664	57281053	1	loss	A	-1	germline	1	0.0833069237154318	0.270110563253734
18	61970660	61973049	1	loss	A	-1	somatic	0	0.0948887834469469	0.289672755735111
18	63743298	63755243	2	neutral	AA	19.0329	somatic	0	0.385746949558358	0.711241911190113
18	64543613	64548391	1	loss	A	-1	somatic	0	0.0309991666621269	0.0599666327296046
18	66175300	66220691	2	neutral	AA	100	somatic	0	0.19046238261102	0.0809544355537356
18	66335363	66359253	2	neutral	AA	100	somatic	0	0.673816193389208	0.48926142056151
18	74615637	74618026	3	gain	-	-1	germline	1	0.0832927859874942	0.270086012633877
18	76634342	76636731	1	loss	A	-1	somatic	0	0.114615796611003	0.320833923692371
18	76966413	76968802	3	gain	AAA	15.0608	somatic	0	0.0833122258645242	0.270119770156125
18	79200128	79202517	4	gain	AABB	25.9064	germline	1	0.0832821839670256	0.270067600737902
18	79520254	79522643	1	loss	A	-1	germline	1	0.0835688224752054	0.270565043549483
19	1227946	1230335	0	loss	-	-1	somatic	0	0.0832868958411567	0.270075783689661
19	4218974	4223752	4	gain	AAAB	54.896	germline	1	0.0143110821315213	0.0366391679514405
19	7188501	7217169	2	neutral	AA	36.415	somatic	0	0.130259573219256	0.296873651302538
19	7448902	7451291	9	gain	AAAAAABBB	4.51171	germline	1	0.083268638531721	0.270044075759686
19	8834522	8918137	2	neutral	AA	1.59864	germline	1	0.0484947919769256	0.0804338082477049
19	12537472	12542250	2	neutral	AA	54.5678	somatic	0	0.0760971438110411	0.159857547212545
19	19926649	19936205	2	neutral	AA	27.2839	somatic	0	0.142726827268278	0.359336413002355
19	21369605	21565503	2	neutral	AA	0.797338	somatic	0	0.775128765544714	0.616378534830733
19	21565503	21582226	2	neutral	AA	0.583425	germline	1	3.58339363664607e-05	4.00892352649951e-05
19	21582226	21587004	2	neutral	AA	2.35158	germline	1	0.191645618745525	0.320144202602881
19	23280805	23426534	2	neutral	AA	36.4027	somatic	0	0.739819337698891	0.434043722112873
19	24329576	24386912	4	gain	AABB	0.382584	germline	1	2.15980337986848e-17	0
19	24386912	24406024	4	gain	AABB	1.38581	germline	1	0.000107603907427381	9.08874657562508e-05
19	24415580	24417969	2	neutral	AA	7.26145	somatic	0	0.0851425556937424	0.273284037008172
19	27337327	27342105	4	gain	AABB	5.47968	germline	1	0.0143118256665613	0.0366436460009992
19	27344494	27346883	3	gain	AAB	11.1061	germline	1	0.0832833619153138	0.270069646458877
19	27346883	27380329	6	gain	AAAABB	0.15001	germline	1	1.97539839558546e-09	7.55823181819437e-11
19	27382718	27399441	5	gain	AAABB	0.30483	germline	1	4.59589721277614e-06	1.66401364776192e-06
19	29511317	29516095	1	loss	A	-1	somatic	0	0.01992964136982	0.0539728693693463
19	32643296	32657630	2	neutral	AA	54.5873	somatic	0	0.80907547502409	0.984314950317276
19	34630944	34745616	2	neutral	AA	34.9844	somatic	0	0.414466103890416	0.545799532749071
19	34745616	34748005	3	gain	AAB	4.08745	somatic	0	0.0832880738434306	0.270077829455887
19	34748005	34755172	2	neutral	AA	26.0737	somatic	0	0.461049552433606	0.895349970531914
19	35168469	35175636	1	loss	A	-1	somatic	0	0.0204044407385894	0.0554020361545466
19	37712754	37722310	2	neutral	AA	100	somatic	0	0.530707597395689	0.760346647009995
19	38689855	38761525	2	neutral	AA	15.3813	somatic	0	0.477077574932192	0.451867439772423
19	44667133	44669522	1	loss	A	-1	somatic	0	0.0847741503979082	0.272649035280121
19	44772249	44784194	2	neutral	AA	21.9301	germline	1	0.0652559809602126	0.15893225854855
20	59725	66892	6	gain	-	-1	germline	1	0.0143081083321014	0.0366349702148354
20	21305102	21307491	0	loss	-	-1	germline	1	0.0832680496402373	0.270043052968474
20	26317224	26322002	1	loss	A	-1	somatic	0	0.0165450835034153	0.0417203893110718
20	28780283	28787450	7	gain	-	-1	germline	1	0.0143080154096537	0.0366349702148354
20	28804173	28832841	9	gain	-	-1	germline	1	2.03566440937457e-07	3.04772402870412e-08
20	28835230	28837619	3	gain	-	-1	germline	1	0.0832945530971931	0.270089081372283
20	28871065	28873454	6	gain	-	-1	germline	1	0.0832709941313934	0.27004816695279
20	28897344	28899733	12	gain	-	-1	germline	1	0.0832674607521273	0.270042030180101
20	28942735	28945124	4	gain	-	-1	germline	1	0.0832762944280245	0.270057372302698
20	29262861	29265250	10	gain	-	-1	germline	1	0.0832680496402373	0.270043052968479
20	29265250	29270028	4	gain	-	-1	germline	1	0.0143095022327005	0.0366366492589802
20	29272417	29286751	3	gain	-	-1	germline	1	2.23003255981019e-05	1.24177649852841e-05
20	29286751	29313030	4	gain	-	-1	germline	1	4.33204279249289e-08	4.14266654313877e-09
20	29408590	29410979	6	gain	-	-1	germline	1	0.0832727608665725	0.270051235377309
20	29876834	29879223	9	gain	-	-1	germline	1	0.0832698163248096	0.270046121350582
20	29891168	29893557	6	gain	-	-1	germline	1	0.0832704052264146	0.270047144150272
20	30282964	30285353	6	gain	-	-1	germline	1	0.0832727608665725	0.270051235377309
20	30939939	30942328	5	gain	-	-1	germline	1	0.0832727608665725	0.270051235377309
20	31066556	31068945	61	gain	-	-1	germline	1	0.0832656941080396	0.270038961831931
20	31162116	31171672	3	gain	-	-1	germline	1	0.000542620403802411	0.000703340402215868
20	31183617	31188395	20	gain	-	-1	germline	1	0.0143068074662752	0.0366324517748552
20	31188395	31240953	3	gain	-	-1	germline	1	9.83624888458941e-07	2.45070824300697e-07
20	31240953	31243342	55	gain	-	-1	germline	1	0.0832656941080396	0.270038961831931
20	37602860	37633917	2	neutral	AA	93.8744	somatic	0	0.158736625256645	0.101636960079802
20	39827019	39860465	2	neutral	AA	54.6067	somatic	0	0.43880795702479	0.466948631846441
20	40061141	40108921	2	neutral	AA	100	germline	1	0.519527695779244	0.407472020731144
20	43642252	43647030	1	loss	A	-1	germline	1	0.0143497445872525	0.0367467733880874
20	44762693	44831974	2	neutral	AA	11.9824	germline	1	0.794286476189636	0.860688190579012
20	49079616	49110673	2	neutral	AA	27.5116	somatic	0	0.499261502399735	0.759261463961401
20	50904812	50907201	2	neutral	AA	100	somatic	0	0.578384304884153	0.77571676366284
20	51126989	51138934	2	neutral	AA	100	germline	1	0.127639787414314	0.294232214701833
20	51234494	51241661	2	neutral	AA	21.8271	germline	1	0.71944150625962	0.936932292041527
20	53871950	53888673	2	neutral	AA	54.5678	somatic	0	0.650462799400682	0.937831869825864
20	54356917	54373640	2	neutral	AA	54.5678	somatic	0	0.749940260201733	0.729290646543561
20	57061265	57070821	2	neutral	AA	100	somatic	0	0.363626652889907	0.453854731326582
20	59849228	59949566	2	neutral	AA	100	somatic	0	0.0154403564325643	0.0262753465302233
20	61043728	61046117	3	gain	AAB	23.1398	germline	1	0.0832845398770984	0.270071692191162
20	61062840	61103453	2	neutral	AA	22.6095	somatic	0	0.692170568404518	0.926361295195518
20	61531084	61566919	2	neutral	AA	20.4008	somatic	0	0.598903748777672	0.828454080627619
21	0	8989807	6	gain	AAAABB	-1	somatic	0	0.000107549695541307	9.08267400265839e-05
21	8989807	8996974	8	gain	AAAAABBB	0.734927	germline	1	0.00270026156063609	0.00495815755621021
21	8996974	10650162	6	gain	AAAABB	-1	somatic	0	0.00270070175930553	0.00495861205731851
21	10650162	10652551	4	gain	AAAA	45.2247	germline	1	0.0832751165607117	0.27005532664959
21	10652551	10690775	6	gain	AAAABB	1.29587	germline	1	1.97304971497168e-11	1.87405646556726e-13
21	10690775	10693164	57	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBBB	100	germline	1	0.0832656941080396	0.270038961831931
21	10693164	10755278	6	gain	AAAABB	1.67046	somatic	0	9.50383896158473e-15	0
21	15743510	15755455	2	neutral	AA	100	germline	1	0.597409605766826	0.886906053036641
21	15970465	16037357	2	neutral	AA	89.2087	somatic	0	0.287539924283459	0.205050974981931
21	16223699	16226088	2	neutral	AA	100	somatic	0	0.137211594159724	0.353950660138294
21	19931427	19943372	2	neutral	AA	100	somatic	0	0.459453188361631	0.329257138984477
21	20294555	20296944	2	neutral	AA	100	somatic	0	0.229586563883758	0.470164435404048
21	20586013	20588402	1	loss	A	-1	somatic	0	0.0845255881077957	0.272220810830017
21	20588402	20590791	2	neutral	AA	100	somatic	0	0.133817071656223	0.34908841690221
21	21529668	21572670	2	neutral	AA	100	germline	1	0.836578381669023	0.392383699753705
21	22392097	22401653	2	neutral	AA	100	somatic	0	0.354259396818553	0.435069210334841
21	22738502	22781504	2	neutral	AA	28.4256	somatic	0	0.658514858145547	0.959654433594421
21	25633970	25641137	2	neutral	AA	100	germline	1	0.852852440608511	0.935834986813707
21	26725743	26728132	2	neutral	AA	100	somatic	0	0.832601652734047	0.911348967836425
21	27411386	27423331	2	neutral	AA	36.3815	germline	1	0.890321021090881	0.887753960064782
21	29406201	29418146	2	neutral	AA	100	somatic	0	0.484825695684075	0.312162231018177
21	29704826	29735883	2	neutral	AA	46.0422	somatic	0	0.85020481120998	0.646791895634252
21	29903113	29922225	2	neutral	AA	54.5678	somatic	0	0.04601469549038	0.101805574635502
21	31823869	31845370	2	neutral	AA	100	somatic	0	0.0749645898262694	0.0482251123523778
21	32359005	32366172	2	neutral	AA	54.5678	germline	1	0.267387955406187	0.457508735380745
21	32612239	32650463	2	neutral	AA	54.5678	somatic	0	0.0155366228939799	0.0812650209269833
21	33283548	33285937	2	neutral	AA	100	germline	1	0.149915773935106	0.371504547542627
21	33398220	33402998	2	neutral	AA	27.5311	somatic	0	0.886769928910795	0.693738258248789
21	34052806	34105364	2	neutral	AA	75.0488	somatic	0	0.545501852607418	0.834753852682571
21	34669168	34671557	2	neutral	AA	100	somatic	0	0.807007135091461	0.900793619546932
21	36867048	36881382	2	neutral	AA	100	germline	1	0.322737472730001	0.579915612537156
21	36945885	36974553	2	neutral	AA	54.5678	somatic	0	0.365269031008194	0.651535795653369
21	37667363	37696031	2	neutral	AA	27.9954	somatic	0	0.333956616495217	0.468345815735685
21	39695624	39698013	2	neutral	AA	100	somatic	0	0.611981002298071	0.797535860109547
21	41805111	41807500	3	gain	AAA	11.3197	germline	1	0.0832874848406066	0.270076806571363
21	42292467	42316357	2	neutral	AA	76.9193	somatic	0	0.250364191303354	0.465628181798506
21	42908829	42911218	2	neutral	AA	100	germline	1	0.971990068400633	0.957099217404783
21	43262401	43264790	4	gain	-	-1	germline	1	0.0832757054926812	0.27005634947473
21	43336460	43338849	3	gain	AAB	32.9887	somatic	0	0.0832933750206863	0.270087035543851
21	45553452	45555841	1	loss	A	-1	germline	1	0.0835109587220132	0.270464682380029
21	46045586	46050364	2	neutral	AA	3.50037	somatic	0	0.938094994598905	0.827768519344074
21	46358545	46370490	2	neutral	AA	38.4816	somatic	0	0.618114215760319	0.919078740915221
22	11627263	11629652	4	gain	AABB	42.853	germline	1	0.0832768833667418	0.270058395133493
22	17289193	17291582	0	loss	-	-1	germline	1	0.0832651052334245	0.270037939054858
22	17876887	17879276	3	gain	AAA	7.50026	germline	1	0.0832833619153138	0.270069646458877
22	20385337	20397282	2	neutral	AA	100	somatic	0	0.85052459045962	0.684021388102043
22	23557929	23560318	1	loss	A	-1	somatic	0	0.113198239771876	0.318674301644217
22	25053443	25058221	1	loss	A	-1	somatic	0	0.029569155011542	0.0577663012658897
22	27322993	27332549	2	neutral	AA	54.5678	somatic	0	0.882522097091352	0.833832064535337
22	29119521	29121910	3	gain	AAB	29.4184	somatic	0	0.0833098693200701	0.27011567817123
22	29236582	29238971	1	loss	A	-1	somatic	0	0.100849083494504	0.299350537084611
22	32143995	32146384	1	loss	A	-1	somatic	0	0.103519951336769	0.303610626979178
22	32683909	32769913	2	neutral	AA	54.8502	somatic	0	0.952799577530364	0.760205466287569
22	33359996	33364774	1	loss	A	-1	germline	1	0.0210971615863932	0.0566374312855135
22	33383886	33388664	1	loss	A	-1	somatic	0	0.0291871739186696	0.0568845442176718
22	34468492	34470881	1	loss	A	-1	somatic	0	0.110651316044419	0.3147624983935
22	36747598	36752376	1	loss	A	-1	germline	1	0.0167688948517259	0.0433047856957096
22	37696031	37712754	2	neutral	AA	36.3786	somatic	0	0.569972760271694	0.575641893479308
22	39325329	39353997	2	neutral	AA	54.5678	somatic	0	0.160741845435045	0.242285522958848
22	41723885	41785999	2	neutral	AA	36.3786	somatic	0	0.132301605759347	0.123485853916992
22	42519422	42564813	3	gain	AAB	10.1657	germline	1	2.05435380006619e-07	3.14635697495902e-08
22	44738803	44743581	1	loss	A	-1	somatic	0	0.0276957094000507	0.0580835396709817
22	45529562	45625122	2	neutral	AA	100	germline	1	0.755422276560991	0.806146307206633
22	46616557	46681060	2	neutral	AA	2.43021	somatic	0	0.93865220253391	0.778718955376494
22	50312340	50336230	2	neutral	AA	44.5112	somatic	0	0.0921470143250592	0.162714577095857
X	3523775	3526164	2	gain	AA	7.79643	somatic	0	0.832095844462429	0.911159992948392
X	78268418	78270807	3	gain	-	-1	somatic	0	0.083296320237261	0.270092150136139
X	115307474	115309863	0	loss	-	-1	germline	1	0.0832651052334245	0.270037939054858
Y	10654940	10657329	7	gain	-	-1	germline	1	0.0832704052264146	0.270047144150272
Y	10659718	10757667	3	gain	-	-1	germline	1	1.71390814012612e-05	1.68617258811121e-06
Y	10757667	10764834	5	gain	-	-1	germline	1	0.002700617100623	0.00495861205731851
Y	10764834	10774390	3	gain	-	-1	germline	1	0.0605515801137966	0.0225729146465211
Y	10774390	10776779	5	gain	-	-1	germline	1	0.0832751165607117	0.27005532664959
Y	10776779	10795891	2	gain	-	-1	germline	1	0.051759301438677	0.00408876073419173
Y	10795891	10803058	4	gain	-	-1	germline	1	0.00270114202354729	0.00495997578979834
Y	10803058	10901007	2	gain	-	-1	germline	1	0.0803941291385855	0.00276993205082132
Y	10920119	10922508	3	gain	-	-1	germline	1	0.083737875826597	0.270858089638726
Y	10924897	10927286	5	gain	-	-1	germline	1	0.0832733497850465	0.270052258191138
Y	10927286	10934453	2	gain	-	-1	germline	1	0.0338428984463962	0.117701000732049
Y	10934453	10939231	4	gain	-	-1	germline	1	0.0143116397796067	0.0366430862186181
Y	10939231	10987011	2	gain	-	-1	germline	1	0.772050433632671	0.0154981335358155
Y	10987011	10989400	13	gain	-	-1	germline	1	0.0832674607521273	0.270042030180101
Y	10989400	10998956	2	gain	-	-1	germline	1	0.861079194743968	0.48233585564345
Y	10998956	11001345	7	gain	-	-1	germline	1	0.0832704052264146	0.270047144150272
Y	11013290	11015679	16	gain	-	-1	germline	1	0.0832674607521273	0.270042030180101
Y	11015679	11039569	2	gain	AA	100	germline	1	0.0206205672578946	0.0774277874551624
Y	11290414	11307137	29	gain	AAAAAAAAAAAAAAAAAAABBBBBBBBBB	31.6787	germline	1	4.59400112182302e-06	1.66339093932155e-06
Y	11307137	11333416	9	gain	AAAAAABBB	0.381001	germline	1	2.20972787389657e-05	1.22918043827802e-05
Y	11529314	11534092	15	gain	AAAAAAAAAAAAABB	15.6988	germline	1	0.0143071791315791	0.0366335710628116
Y	11686988	11689377	3	gain	AAB	28.4937	germline	1	0.0833110475855478	0.270117724158022
Y	11689377	11691766	7	gain	AAAAABB	100	germline	1	0.0832704052264146	0.270047144150272
Y	11715656	11718045	4	gain	AAAA	6.13292	germline	1	0.0832768833667418	0.270058395133493
Y	11720434	11725212	22	gain	AAAAAAAAAAAAAAABBBBBBB	100	germline	1	0.0143068074662752	0.0366324517748552
Y	11725212	11746713	2	gain	AB	100	germline	1	0.296382002189136	0.311331888116071
Y	11746713	11749102	9	gain	AAAAAABBB	3.24549	germline	1	0.083268638531721	0.270044075759686
Y	26637350	26639739	5	gain	AAABB	21.3708	germline	1	0.0832751165607117	0.27005532664959
Y	26639739	26656462	2	gain	AA	14.4148	germline	1	0.934933366683965	0.553082577063455
Y	56827143	56836699	25	gain	AAAAAAAAAAAAAAAABBBBBBBBB	7.16149	germline	1	0.000532075826467808	0.000670986758400494
Y	56836699	56851033	10	gain	AAAAAAABBB	3.27015	germline	1	0.00053210526868489	0.00067102776309691
