chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	1307596	1386164	2	neutral	AA	6.91213	somatic	0	0.00676809029227315	0.0787443058537882
1	5668120	5676538	3	gain	AAB	0.570645	germline	1	0.00270552209215119	0.00496766129972193
1	14150658	14178718	2	neutral	AA	54.6184	somatic	0	0.653787873910302	0.481499088700544
1	16611520	16617132	8	gain	AAAAAABB	100	germline	1	0.0143060960077386	0.0366313804836299
1	16628356	16636774	5	gain	AAABB	7.20331	germline	1	0.014306313686335	0.0366320360447225
1	16720954	16942628	4	gain	AABB	1.27751	germline	1	4.32351435515047e-08	4.12876743904889e-09
1	25854484	26076158	2	neutral	AA	100	somatic	0	8.00138549359214e-08	2.15137207226768e-06
1	26076158	26432520	2	neutral	AA	95.1105	somatic	0	5.20527615635068e-15	1.75748304798162e-13
1	37510608	37993240	2	neutral	AA	8.76942	somatic	0	3.07469580927465e-19	4.66293670342566e-15
1	41635428	41655070	2	neutral	AA	100	somatic	0	0.719621656595455	0.433692402077587
1	55662622	55668234	1	loss	A	-1	germline	1	0.0143128454029867	0.0366471167832081
1	72288172	72347098	1	loss	A	-1	germline	1	2.20211020332579e-15	0
1	74524554	74577868	2	neutral	AA	100	somatic	0	0.784144062094061	0.981052279919393
1	96641446	96742462	2	neutral	AA	75.4359	somatic	0	0.661833217171769	0.960933582885741
1	103561042	103763074	3	gain	AAB	10.1911	germline	1	9.29642449328998e-09	5.771139122146e-10
1	105494376	105514018	2	neutral	AA	100	somatic	0	0.947296227142093	0.592513789326535
1	107399650	107444546	2	neutral	AA	100	somatic	0	0.000525327201579276	0.00126431879671507
1	125080256	125083062	7	gain	-	-1	germline	1	0.0832652061556325	0.270038026720023
1	125083062	125164436	3	gain	-	-1	germline	1	9.26682239908781e-05	0.000485976051720738
1	125164436	143737350	1	loss	A	-1	somatic	0	2.00222703123666e-36	0
1	151501552	151512776	2	neutral	AA	100	somatic	0	0.67026329214162	0.892410320801849
1	152581862	152612728	1	loss	A	-1	germline	1	9.70627379648002e-09	6.6467198411857e-10
1	169154098	169367354	2	neutral	AA	36.4082	somatic	0	0.0271943584143244	0.0790950192006893
1	171864694	171875918	2	neutral	AA	54.5678	somatic	0	0.544489938961641	0.28866678369477
1	180347232	180552070	2	neutral	AA	33.9549	somatic	0	0.125672949280799	0.368871889692869
1	180989806	181043120	2	neutral	AA	46.5542	somatic	0	0.0279236407321483	0.0344070577919883
1	181073986	181121688	2	neutral	AA	100	somatic	0	0.225940112240891	0.101370822686051
1	192250284	192323240	2	neutral	AA	23.2811	somatic	0	0.704395265712105	0.748177328071744
1	192673990	192746946	2	neutral	AA	100	somatic	0	0.0048757380704635	0.0176530664691361
1	202666156	202708246	2	neutral	AA	100	somatic	0	0.456433210563764	0.272997790445023
1	213379464	213404718	2	neutral	AA	54.5686	somatic	0	0.0154617297394873	0.0280559280353972
1	219897802	219973564	2	neutral	AA	21.505	somatic	0	0.301743498571394	0.277372239093606
1	223093836	223099448	2	neutral	AA	54.5678	somatic	0	0.72402491502989	0.848670211186427
1	226337572	226343184	2	neutral	AA	100	germline	1	0.0313402264599932	0.0604745815742562
1	234775214	234778020	5	gain	AAAAB	33.7923	germline	1	0.0832665858083439	0.270040422940498
1	234778020	234783632	7	gain	AAAAABB	3.22691	germline	1	0.0143060960077386	0.0366313804836299
1	236096840	236099646	6	gain	AAAABB	34.5871	germline	1	0.0832652061556325	0.270038026720023
1	239528578	239539802	2	neutral	AA	55.0709	germline	1	0.597886292416653	0.803387037438111
1	244450302	244498004	2	neutral	AA	13.7213	somatic	0	0.0747626203295946	0.129249562638655
1	248895006	248925872	3	gain	-	-1	somatic	0	2.25057435675799e-07	3.84616734017129e-08
2	11224	81374	3	gain	-	-1	somatic	0	8.60207968726584e-17	0
2	3179198	3182004	6	gain	-	-1	germline	1	0.0832652061556325	0.270038026720023
2	24479544	24588978	2	neutral	AA	54.2282	somatic	0	0.323961546305774	0.29572486382013
2	33397012	33402624	2	neutral	AA	100	somatic	0	0.739634404595866	0.950169825785159
2	34471710	34505382	1	loss	A	-1	germline	1	9.33248831404628e-09	5.66120705869366e-10
2	34878580	34884192	2	neutral	AA	48.1997	somatic	0	0.44573388034614	0.570728622885559
2	35751246	35765276	1	loss	A	-1	germline	1	0.00010811149693413	9.13651914435931e-05
2	38422558	38464648	2	neutral	AA	36.3786	somatic	0	0.374818263793955	0.583579549059243
2	38711576	38798562	2	neutral	AA	99.3541	somatic	0	0.0137145372199543	0.00412990697853333
2	50536060	50541672	2	neutral	AA	100	somatic	0	0.477508940415956	0.778306395460339
2	54119322	54200696	1	loss	A	-1	germline	1	5.10001730233668e-20	0
2	54405534	54411146	2	neutral	AA	100	germline	1	0.310238022455397	0.526987027081775
2	54977958	54983570	2	neutral	AA	100	somatic	0	0.677178199531147	0.976023336822337
2	55418500	55432530	2	neutral	AA	100	somatic	0	0.722972139872349	0.925363606083878
2	56456720	56470750	2	neutral	AA	100	somatic	0	0.0543299503295174	0.131253291512477
2	59287974	59316034	2	neutral	AA	100	somatic	0	0.000207756016882144	0.000800946400242752
2	72821312	72849372	2	neutral	AA	100	somatic	0	0.905730727345321	0.667814281263836
2	76309170	76326006	2	neutral	AA	100	somatic	0	0.461997862901745	0.661257554527283
2	79165678	79171290	2	neutral	AA	54.5678	somatic	0	0.890426562256303	0.917369331042911
2	81298238	81887498	2	neutral	AA	22.1402	somatic	0	6.38547081851748e-05	0.00200309872182469
2	84721558	84856246	2	neutral	AA	99.3286	somatic	0	0.0698907764269277	0.0721741842604547
2	85293982	85341684	2	neutral	AA	63.31	somatic	0	0.0378528669901098	0.0207124172949855
2	88591032	88697660	2	neutral	AA	49.4844	somatic	0	0.121425251030842	0.151266214808641
2	88944588	89003514	2	neutral	AA	0.675372	somatic	0	0.00509921685645533	0.0106073959784576
2	89772358	89825672	4	gain	AAAB	3.25584	germline	1	9.24828782967227e-13	3.44169137633799e-15
2	89825672	89842508	20	gain	AAAAAAAAAAAAABBBBBBB	4.88192	germline	1	2.20922099460647e-05	1.22894143729235e-05
2	89842508	89850926	4	gain	AAAB	7.31037	germline	1	0.00270028187264869	0.00495813645382837
2	90064182	90081018	2	neutral	AA	3.9118	somatic	0	0.292909571880507	0.650942369037852
2	91411062	91413868	4	gain	-	-1	germline	1	0.0832665858083439	0.270040422940498
2	96492728	96554460	2	neutral	AA	100	somatic	0	0.76290742770712	0.827252214318978
2	102772556	102780974	2	neutral	AA	100	somatic	0	0.715581117631479	0.793825721559896
2	106644836	106653254	2	neutral	AA	100	somatic	0	0.552673700094497	0.799623380501832
2	109198296	109201102	12	gain	AAAAAAAAAAAB	32.1107	germline	1	0.0832652061556325	0.270038026720023
2	115461288	115475318	2	neutral	AA	100	germline	1	0.489945053757003	0.650301106921778
2	123298446	123306864	2	neutral	AA	100	somatic	0	0.0636677584323112	0.11649437527338
2	127936764	127950794	2	neutral	AA	100	somatic	0	0.0237546375715398	0.0255486476756502
2	134542088	135984372	2	neutral	AA	41.1312	somatic	0	0.000633229494390975	0.000331368000739407
2	146105614	146119644	1	loss	A	-1	germline	1	0.000108915299081815	9.19307831236393e-05
2	151776540	151782152	2	neutral	AA	100	somatic	0	0.422159348259937	0.476267636810904
2	160968996	161011086	2	neutral	AA	100	somatic	0	0.599150775323119	0.94027860953056
2	167063628	167069240	2	neutral	AA	100	somatic	0	0.0592992055447013	0.090319153708001
2	175767840	175773452	2	neutral	AA	100	somatic	0	0.712939436468746	0.973667708206554
2	177078242	177198900	2	neutral	AA	100	somatic	0	0.0804350436047236	0.0462061769181177
2	188537946	188543558	2	neutral	AA	100	somatic	0	0.550486997356122	0.845286094621477
2	190951106	190973554	2	neutral	AA	100	germline	1	0.203079238702816	0.289835569371922
2	191916370	192115596	2	neutral	AA	100	somatic	0	7.19666269618786e-05	0.000143101320732697
2	194464218	194486666	2	neutral	AA	100	somatic	0	0.870852169067832	0.630023256994344
2	200188458	200241772	2	neutral	AA	55.8585	somatic	0	0.117622656240571	0.181294604574929
2	200755270	200769300	2	neutral	AA	54.5678	somatic	0	0.848593361722657	0.893255078288461
2	204422712	204470414	2	neutral	AA	59.6135	somatic	0	0.0221013338316711	0.0728996501792287
2	210792332	210811974	2	neutral	AA	59.6785	somatic	0	0.0962672162203662	0.0875426013182733
2	212745308	212776174	2	neutral	AA	54.5777	somatic	0	0.728866252784925	0.945215018861906
2	215091124	215096736	2	neutral	AA	15.5908	somatic	0	0.280438128190631	0.636416718469168
2	220952858	220994948	2	neutral	AA	100	somatic	0	0.981765283721966	0.548416942866434
2	224390208	224482806	2	neutral	AA	100	somatic	0	0.979671344696151	0.999985208239649
2	225998046	226017688	2	neutral	AA	100	somatic	0	0.449817513039794	0.845793323169681
2	235229786	235252234	2	neutral	AA	100	somatic	0	0.022960136071801	0.0959884788936322
2	236641204	236666458	2	neutral	AA	100	germline	1	0.312017187675995	0.803937525250346
2	239281650	239346188	2	neutral	AA	36.4132	germline	1	0.152163914246116	0.241273309128023
2	240216048	240221660	2	neutral	AA	15.9021	somatic	0	0.0856484868394186	0.260230075592093
3	8286118	8504986	2	neutral	AA	44.3913	germline	1	0.0121959209068373	0.00390283501044719
3	12862704	12873928	1	loss	A	-1	germline	1	0.000542919253011263	0.000699293019164049
3	53718064	53748930	2	neutral	AA	36.3845	somatic	0	0.549269859760375	0.707334812659355
3	56437078	56504422	2	neutral	AA	100	somatic	0	0.659480982285138	0.676817065072739
3	64282654	64321938	2	neutral	AA	21.9363	somatic	0	0.0599321436353964	0.0495430750533989
3	67675108	67683526	3	gain	AAA	100	germline	1	0.00270222602230426	0.00496033300812959
3	75669402	75672208	6	gain	AAAAAA	1.76498	germline	1	0.0832652061556325	0.270038026720023
3	75711492	76194124	2	neutral	AA	0.356074	germline	1	0.00424638338417872	0.012894656056029
3	80013090	80015896	0	loss	-	-1	germline	1	0.0832679654795734	0.270042819176505
3	85406222	85423058	2	neutral	AA	100	germline	1	0.0103411208116909	0.0573995411607321
3	111524470	111527276	0	loss	-	-1	germline	1	0.0832665858083439	0.270040422940508
3	116174012	116275028	2	neutral	AA	90.9868	somatic	0	0.732450985576245	0.242679942235811
3	121460516	121558726	2	neutral	AA	97.3447	somatic	0	0.00010379449461846	0.000386697720776374
3	137418238	137595016	2	neutral	AA	100	somatic	0	0.561214339928939	0.634338812461148
3	138504160	138551862	2	neutral	AA	100	somatic	0	0.971439376620494	0.652265636670034
3	162414086	162430922	2	neutral	AA	100	somatic	0	0.88084211984329	0.924071149989877
3	162795702	162907942	1	loss	A	-1	somatic	0	2.6638237533915e-23	0
3	191582456	191590874	2	neutral	AA	100	somatic	0	0.614981266809764	0.595127303804333
3	193156622	193167846	1	loss	A	-1	somatic	0	0.0005368556872603	0.000678457042175395
3	195103986	195266734	2	neutral	AA	74.5509	somatic	0	0.667150482553518	0.841981157375647
4	1635898	1641510	2	neutral	AA	36.3786	somatic	0	0.704311065360806	0.903893322044575
4	7542528	7553752	2	neutral	AA	53.6022	somatic	0	0.612458126779999	0.800151188174824
4	19599910	19807554	1	loss	A	-1	germline	1	3.19789041772149e-46	0
4	48762668	48768280	2	neutral	AA	100	somatic	0	0.385475843184645	0.661552264286523
4	49147090	49155508	80	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBBBBBBBBBBBBBB	100	germline	1	0.0143060960077386	0.0366313804836299
4	49646558	49657782	14	gain	AAAAAAAAAABBBB	20.9295	germline	1	0.00269986543547371	0.00495760409010948
4	56894456	56919710	2	neutral	AA	31.0008	somatic	0	0.0147165198949113	0.141126013431726
4	62540128	62568188	2	neutral	AA	100	somatic	0	0.355610197116891	0.649699040422796
4	63847724	63850530	0	loss	-	-1	somatic	0	0.0832655510670743	0.27003922482833
4	70077044	70088268	2	neutral	AA	100	somatic	0	0.405613204851199	0.585901055904263
4	70621408	70624214	6	gain	-	-1	somatic	0	0.0832652061556325	0.270038026720023
4	74364612	74384254	2	neutral	AA	100	somatic	0	0.376831311407897	0.673743616587272
4	82479564	82485176	2	neutral	AA	100	somatic	0	0.072621632621226	0.12852274462725
4	83023928	83049182	2	neutral	AA	12.1262	somatic	0	0.162175274601389	0.245248588676739
4	84460600	84513914	2	neutral	AA	31.885	somatic	0	7.4608893272995e-05	0.000320389440459534
4	87897950	87940040	2	neutral	AA	54.5678	somatic	0	0.494420867150667	0.703215321457166
4	88108400	88122430	2	neutral	AA	21.8924	somatic	0	0.422913328756886	0.725055968051
4	94960652	94991518	2	neutral	AA	54.6581	somatic	0	0.007501489995133	0.00210037901531746
4	101366750	101434094	2	neutral	AA	54.5879	somatic	0	0.740171117209954	0.690788118854399
4	108061866	108078702	2	neutral	AA	87.3936	somatic	0	0.756318598139939	0.948789353024087
4	109445224	109467672	2	neutral	AA	54.6568	somatic	0	0.714477267475983	0.79422273202564
4	109759496	109807198	2	neutral	AA	56.3591	somatic	0	0.848670955877021	0.9069934056886
4	131177694	131242232	2	neutral	AA	54.5723	somatic	0	0.0958938574873587	0.127949421766613
4	132580694	132589112	2	neutral	AA	100	somatic	0	0.136392873935594	0.516354330259301
4	155090426	155124098	2	neutral	AA	100	somatic	0	0.170522085127209	0.350796197943428
4	166275142	166280754	2	neutral	AA	100	somatic	0	0.436459741411462	0.806085724873465
4	176609640	176640506	2	neutral	AA	100	somatic	0	0.421458838501946	0.79061607513069
4	177184870	177229766	2	neutral	AA	100	somatic	0	0.261770612926844	0.494251285608937
4	187334172	187356620	2	neutral	AA	100	somatic	0	0.96576121061415	0.892965662465953
5	14030	16836	4	gain	-	-1	germline	1	0.0832665858083439	0.270040422940498
5	415288	418094	4	gain	-	-1	germline	1	0.0832665858083439	0.270040422940498
5	3322304	3325110	4	gain	-	-1	germline	1	0.0832693451693211	0.270045215428014
5	12809390	12820614	1	loss	A	-1	germline	1	0.000540114592476145	0.000684769522616535
5	84651408	84659826	0	loss	-	-1	germline	1	0.0143096880782179	0.0366379365564905
5	91203418	91206224	0	loss	-	-1	germline	1	0.0832665858083439	0.270040422940508
5	100623160	100676474	1	loss	A	-1	germline	1	9.47470023021395e-13	3.5527136788005e-15
5	140844364	140858394	1	loss	A	-1	germline	1	0.000536037075880853	0.000675575039577825
5	147452494	147455300	2	neutral	AA	100	somatic	0	0.820673863445403	0.906484770146948
5	151114324	151131160	2	neutral	AA	100	somatic	0	0.363031872433748	0.413173234860216
5	152856850	152859656	2	neutral	AA	100	somatic	0	0.212904699642166	0.450897183123261
5	155410310	155502908	2	neutral	AA	100	somatic	0	0.0684523849099806	0.186200164636847
5	157598990	157615826	2	neutral	AA	100	somatic	0	0.0379024522037658	0.1092374017218
5	159394830	159397636	2	neutral	AA	54.5678	somatic	0	0.649886073380573	0.820756689874394
5	160071076	160115972	2	neutral	AA	44.9286	somatic	0	7.92873361968314e-07	9.46703305337859e-06
5	161561062	161563868	2	neutral	AA	100	somatic	0	0.194230194125466	0.428578277533224
5	162343936	162371996	2	neutral	AA	36.5429	somatic	0	0.339525105653759	0.575529366143887
5	165262176	165264982	2	neutral	AA	100	somatic	0	0.429776519638262	0.664394190979707
5	165523134	165548388	2	neutral	AA	37.5813	somatic	0	0.536352315584833	0.945749653520831
5	170669338	170674950	2	neutral	AA	55.0709	somatic	0	0.150003078106433	0.283367191446071
5	172361356	172406252	2	neutral	AA	54.5681	somatic	0	0.156074686088943	0.391414855589914
5	172925362	173031990	2	neutral	AA	100	germline	1	7.69586944876612e-06	2.24367094805444e-05
5	173447278	173478144	2	neutral	AA	100	somatic	0	0.658192720057822	0.331349723597788
5	177580516	177586128	2	neutral	AA	100	somatic	0	0.042887192674232	0.129075790527328
5	178293240	178301658	2	neutral	AA	54.5683	somatic	0	0.278599992468504	0.308225303114246
5	178585064	178587870	6	gain	AAAABB	5.90072	germline	1	0.0832652061556325	0.270038026720023
5	178848828	178851634	2	neutral	AA	100	somatic	0	0.286707723847069	0.531945687417091
5	179454924	179482984	2	neutral	AA	21.8289	germline	1	0.320270125711056	0.27583065739049
5	180403352	180406158	2	neutral	AA	100	somatic	0	0.0927222828683389	0.286093302232887
5	180950522	181003836	1	loss	A	-1	germline	1	4.42381492017872e-14	1.11022302462516e-16
6	294630	297436	3	gain	AAB	21.1922	germline	1	0.0832845229787981	0.270071575219142
6	297436	345138	4	gain	AAAB	11.1854	germline	1	4.2664387312109e-12	2.53130849614536e-14
6	345138	381616	4	gain	AABB	1.15301	germline	1	1.97486811541355e-09	7.55716600409073e-11
6	3086600	3117466	2	neutral	AA	100	somatic	0	0.0250440833891151	0.0220360099930084
6	9436578	9473056	2	neutral	AA	100	somatic	0	0.425048006920774	0.757941007461386
6	13575428	13620324	2	neutral	AA	100	somatic	0	0.202811575610274	0.6049120498739
6	22243162	22245968	2	neutral	AA	100	somatic	0	0.233441279736589	0.474541625661335
6	22829616	22849258	2	neutral	AA	55.5046	somatic	0	0.273001618453259	0.700448207069371
6	24305572	24313990	2	neutral	AA	36.3788	somatic	0	0.376135363054025	0.35894778893426
6	32499092	32529958	0	loss	-	-1	germline	1	4.59436221135673e-06	1.66381282939998e-06
6	32555212	32563630	0	loss	-	-1	germline	1	0.00270125378765405	0.00496159809551688
6	32563630	32566436	1	loss	A	-1	germline	1	0.0832921127238786	0.270084755819011
6	32574854	32577660	3	gain	AAB	48.5451	somatic	0	0.084110935675977	0.27150380787334
6	32583272	32667452	1	loss	A	-1	germline	1	2.07344615686543e-09	1.06824105117198e-10
6	35787724	35798948	4	gain	AABB	29.4436	germline	1	0.000532118540685238	0.000671069355625109
6	42460392	42463198	1	loss	A	-1	somatic	0	0.0850232226626115	0.273078037909487
6	42718544	42858844	2	neutral	AA	100	somatic	0	1.61900240602605e-16	1.02806652080289e-13
6	43824108	43832526	2	neutral	AA	58.3698	somatic	0	0.408905975124052	0.522212436548206
6	44635042	44800596	2	neutral	AA	54.5678	somatic	0	0.00591386525930857	0.00637716566344515
6	63221986	63244434	2	neutral	AA	100	somatic	0	0.858599572051456	0.599448006996538
6	64801764	64810182	2	neutral	AA	54.5678	somatic	0	0.196414790197595	0.243366757075592
6	69818892	69891848	2	neutral	AA	18.2557	somatic	0	0.165040512104801	0.343377245821115
6	81648988	81682660	2	neutral	AA	100	somatic	0	0.374738061895928	0.595402284228359
6	83279274	83324170	2	neutral	AA	36.3798	somatic	0	0.0648074917500474	0.207183919854529
6	83806802	83812414	2	neutral	AA	100	somatic	0	0.180388430065754	0.203533883806036
6	91517690	91576616	2	neutral	AA	100	somatic	0	0.0277554001731706	0.0913405240308549
6	93190066	93192872	3	gain	-	-1	somatic	0	0.0845646868099443	0.272287683798119
6	96203710	96245800	2	neutral	AA	72.4649	somatic	0	0.14224760894676	0.0941231292632663
6	97382230	97387842	2	neutral	AA	21.8282	somatic	0	0.248498100656263	0.274715893425611
6	99534432	99537238	2	neutral	AA	100	somatic	0	0.258905273285549	0.502640144336922
6	103288860	103314114	1	loss	A	-1	germline	1	2.08688095033762e-07	3.27505755848279e-08
6	105713244	105716050	2	neutral	AA	100	somatic	0	0.926756249530641	0.944400167829099
6	106785136	106787942	2	neutral	AA	100	somatic	0	0.924950893127244	0.94388183507424
6	109041160	109043966	2	neutral	AA	100	somatic	0	0.529209727285853	0.741592101841039
6	118867772	118893026	2	neutral	AA	100	somatic	0	0.710374411351275	0.45961922297831
6	121508218	121558726	2	neutral	AA	18.2804	somatic	0	0.0698480552948045	0.277739994063689
6	124224426	124230038	2	neutral	AA	100	somatic	0	0.913281346374899	0.993402656582349
6	125498350	125503962	2	neutral	AA	100	somatic	0	0.766164679623891	0.778667983466014
6	125854712	125882772	2	neutral	AA	100	somatic	0	0.495392307903774	0.970700732780599
6	126025878	126051132	2	neutral	AA	54.5679	somatic	0	0.0257498832988601	0.0521805214704026
6	130164728	130181564	2	neutral	AA	100	somatic	0	0.661226490673414	0.76295922142514
6	132970728	132976340	2	neutral	AA	54.5678	somatic	0	0.389289983033107	0.468902790076225
6	133627332	133632944	2	neutral	AA	100	somatic	0	0.383525771386643	0.4934173338681
6	139026076	139028882	2	neutral	AA	100	somatic	0	0.996862089149808	0.963222256279316
6	143630722	143692454	2	neutral	AA	100	somatic	0	0.0130672823880309	0.0310869059331023
6	143829948	143846784	2	neutral	AA	100	somatic	0	0.0422071148461398	0.26866035797559
6	145356412	145449010	2	neutral	AA	100	somatic	0	0.272712134775508	0.448955856328969
6	145712774	145738028	2	neutral	AA	54.5723	somatic	0	0.47510508494896	0.466193078550277
6	147561928	147564734	2	neutral	AA	100	somatic	0	0.695717363342527	0.84677076182554
6	148476684	148482296	2	neutral	AA	100	somatic	0	0.181823575506519	0.516783401544936
6	151683942	151689554	2	neutral	AA	100	somatic	0	0.553971522469607	0.550112254655133
6	152696908	152744610	2	neutral	AA	36.3786	somatic	0	0.0102824184978781	0.0220446497538351
6	153892264	153962414	2	neutral	AA	9.1129	somatic	0	0.403278173253485	0.330215135524263
6	155623566	155637596	2	neutral	AA	38.8868	somatic	0	0.523352082003994	0.212215774947793
6	157312778	157315584	7	gain	AAAABBB	3.03998	germline	1	0.0832652061556325	0.270038026720023
6	159232082	159316262	2	neutral	AA	100	somatic	0	0.0546352063651766	0.251952960636294
6	159840984	159874656	2	neutral	AA	20.0063	somatic	0	0.063379542493607	0.0342645269343161
6	161499330	161572286	2	neutral	AA	33.3664	somatic	0	0.0164813270803499	0.0140017966510951
6	161979156	161981962	2	neutral	AA	100	somatic	0	0.231799108453398	0.472690089581452
6	163205378	163213796	2	neutral	AA	100	somatic	0	0.665274835729073	0.692104037419104
6	165677464	165683076	2	neutral	AA	15.85	somatic	0	0.0551899737265309	0.0918247830686576
6	166990672	167018732	2	neutral	AA	34.4985	somatic	0	0.271346503837341	0.646399745627305
6	167063628	167074852	2	neutral	AA	37.1744	germline	1	0.312143193124507	0.304536151572573
6	169409444	169429086	2	neutral	AA	100	somatic	0	0.500041111561699	0.512265241700177
7	752008	782874	2	neutral	AA	25.1094	somatic	0	0.00221629859160678	0.00918954706624298
7	903532	906338	3	gain	AAB	15.5834	germline	1	0.0832727944747089	0.270051206124717
7	1475956	1501210	2	neutral	AA	32.3731	somatic	0	0.265881747334559	0.536687915820215
7	3437350	3440156	2	neutral	AA	100	somatic	0	0.877253028742891	0.928167457286983
7	4890858	4930142	2	neutral	AA	100	somatic	0	0.000154112415483097	0.000749106390346976
7	5788778	5794390	2	neutral	AA	47.0697	somatic	0	0.0520028782215689	0.150093665990989
7	7907308	7938174	2	neutral	AA	54.5679	somatic	0	0.693790867500526	0.982042961009085
7	12885152	12890764	2	neutral	AA	100	somatic	0	0.687308067131715	0.593200123812818
7	14731500	14804456	2	neutral	AA	80.0247	somatic	0	0.58356619528358	0.464609304028802
7	16131694	16134500	0	loss	-	-1	germline	1	0.0832679654795734	0.270042819176505
7	24757338	24768562	2	neutral	AA	100	somatic	0	0.305525116926078	0.272980204160615
7	25882544	25907798	2	neutral	AA	54.8668	somatic	0	0.152950588771107	0.561198368836858
7	26954436	27049840	2	neutral	AA	27.5372	somatic	0	0.00105111743167606	0.00245871306718426
7	30717282	30722894	2	neutral	AA	100	somatic	0	0.895861010940292	0.906542952612816
7	35316316	35324734	2	neutral	AA	36.4122	somatic	0	0.825331227455638	0.895257775238279
7	36231072	36236684	2	neutral	AA	54.5679	somatic	0	0.216955702816394	0.298130333935541
7	39808722	39915350	2	neutral	AA	100	somatic	0	0.952348957042241	0.94124490895378
7	41719608	41725220	2	neutral	AA	100	somatic	0	0.85905439040828	0.979990693977111
7	44817432	44820238	1	loss	A	-1	somatic	0	0.0846359605870006	0.272410652251874
7	47918062	48005048	2	neutral	AA	73.4683	somatic	0	0.447695114413539	0.256736436541055
7	50075876	50146026	2	neutral	AA	18.8638	somatic	0	0.0621334937076481	0.0257601434788721
7	50524836	50561314	2	neutral	AA	58.5956	somatic	0	0.455480553740875	0.410082475491294
7	50777376	50785794	2	neutral	AA	100	somatic	0	0.810877348436263	0.950139629560137
7	57486522	57494940	3	gain	AAB	1.89561	germline	1	0.0027319530379788	0.00504439838470627
7	57494940	57497746	2	neutral	AA	10.1881	somatic	0	0.140528238925448	0.358571564205862
7	62335290	62357738	3	gain	AAB	0.430917	germline	1	2.39569942495442e-05	0.000275250020910112
7	62402634	62405440	4	gain	-	-1	germline	1	0.0832672756416439	0.270041621056557
7	62439112	62455948	3	gain	AAB	2.50992	germline	1	0.0013835948440667	0.000645801289110737
7	62565382	62579412	2	neutral	AA	10.8826	somatic	0	0.221599875229545	0.274258571891286
7	64145160	64285460	2	neutral	AA	25.0307	somatic	0	0.000111685922361877	8.89438202567039e-05
7	65225470	65228276	0	loss	-	-1	germline	1	0.0832655510670743	0.27003922482833
7	65343322	65365770	3	gain	AAB	6.87739	germline	1	1.02385310898862e-06	2.60177860034183e-07
7	68356966	68446758	2	neutral	AA	9.88769	somatic	0	2.98079698896627e-05	0.000593179412868072
7	70955322	70958128	0	loss	-	-1	germline	1	0.0832679654795734	0.270042819176505
7	74398284	74423538	2	neutral	AA	54.5679	somatic	0	0.00017575933923779	0.000187637171757071
7	82518848	82521654	2	neutral	AA	100	somatic	0	0.18079606528646	0.411888455103578
7	84042506	84093014	2	neutral	AA	100	germline	1	0.489174719141101	0.767070133893033
7	90341976	90356006	2	neutral	AA	58.2513	somatic	0	0.536631550644781	0.424366370666992
7	93998194	94006612	2	neutral	AA	100	somatic	0	0.320725075483743	0.609026680966424
7	97298050	97303662	2	neutral	AA	100	somatic	0	0.508420189672123	0.4910217298675
7	97766652	97772264	1	loss	A	-1	germline	1	0.0143228658110862	0.0366602348839568
7	100729788	100738206	1	loss	A	-1	germline	1	0.00270399273574812	0.00496432902869692
7	100948656	100957074	3	gain	AAB	1.08178	germline	1	0.00270274203174823	0.00496233064970308
7	100957074	100959880	12	gain	AAAAAAABBBBB	35.2501	germline	1	0.0832652061556325	0.270038026720023
7	100959880	100976716	3	gain	AAB	0.529564	germline	1	2.21524146560557e-05	1.23841142694037e-05
7	101400422	101428482	2	neutral	AA	66.4825	somatic	0	0.00134402878236861	0.0303375102761306
7	101874636	101978458	2	neutral	AA	100	somatic	0	3.36279503347464e-05	4.11975911152052e-05
7	103367428	103373040	2	neutral	AA	100	somatic	0	0.104784548237709	0.213703911884959
7	109535016	109585524	2	neutral	AA	100	somatic	0	0.853797924960761	0.881549563155066
7	109781944	109793168	2	neutral	AA	27.3544	somatic	0	0.380820866079515	0.814353492645271
7	112795588	112798394	0	loss	-	-1	germline	1	0.0832655510670743	0.27003922482833
7	114681220	114709280	2	neutral	AA	54.5678	somatic	0	0.00109947951133548	0.00081055855590273
7	115250838	115284510	2	neutral	AA	100	somatic	0	0.870773279617728	0.357378159584472
7	116291864	116300282	1	loss	A	-1	germline	1	0.00271752609825893	0.00498930415254406
7	118766756	118792010	2	neutral	AA	100	somatic	0	0.299276839268699	0.238722235268257
7	119681512	119740438	2	neutral	AA	100	somatic	0	0.7726581666674	0.91348308227002
7	119976142	119978948	1	loss	A	-1	somatic	0	0.0866450227584502	0.275859238782072
7	120082770	120102412	2	neutral	AA	63.6094	somatic	0	0.260040072121198	0.392722825219358
7	124221620	124418040	2	neutral	AA	18.6545	somatic	0	0.332019339141915	0.147569521601678
7	124799656	124810880	2	neutral	AA	72.0133	somatic	0	0.950421223641972	0.929590956365748
7	131867970	131884806	2	neutral	AA	59.8057	somatic	0	0.895684173340459	0.690222670755297
7	132908996	132917414	2	neutral	AA	100	somatic	0	0.464721114362202	0.639604067845927
7	133074550	133077356	2	neutral	AA	100	somatic	0	0.915169224534915	0.940870323646417
7	135686936	135712190	2	neutral	AA	100	somatic	0	0.202322601295072	0.134488927513024
7	136621334	136646588	2	neutral	AA	58.1403	somatic	0	0.614628749380246	0.754980974620992
7	136803724	136812142	2	neutral	AA	100	somatic	0	0.482870991004603	0.84167696994818
7	140785438	140799468	2	neutral	AA	27.9009	somatic	0	0.0921524690682696	0.186551345509657
7	144848526	144932706	2	neutral	AA	54.5678	somatic	0	0.0150675593393754	0.0152037198678574
7	146664008	146694874	2	neutral	AA	72.3507	somatic	0	0.347678481535489	0.816813103784633
7	150356704	150362316	2	neutral	AA	55.2484	somatic	0	0.0422578850933237	0.0963600597162878
7	152402278	152407890	10	gain	AAAAAAAABB	3.46072	germline	1	0.0143060960077386	0.0366313804836299
7	152736192	152753028	2	neutral	AA	58.1816	somatic	0	0.00169958505994029	0.0106789856311729
7	152753028	152893328	2	neutral	AA	12.5876	somatic	0	0.949043666004538	0.314598210414072
7	153923130	153925936	2	neutral	AA	100	somatic	0	0.712639614817985	0.85580466725859
7	154599376	154607794	1	loss	A	-1	germline	1	0.00271387795825551	0.00498642683315476
7	155326130	155351384	3	gain	AAB	2.98693	somatic	0	0.00193534725874086	0.00833429778255912
7	157439048	157483944	2	neutral	AA	20.9781	somatic	0	0.0159696643382968	0.0218229044408647
7	157587766	157601796	2	neutral	AA	54.5678	somatic	0	0.0218562979324148	0.0166155891155106
7	158148966	158151772	6	gain	AAAABB	6.67788	germline	1	0.0832652061556325	0.270038026720023
7	159282590	159285396	3	gain	-	-1	somatic	0	0.0838601670173299	0.271069833421207
7	159291008	159330292	3	gain	AAB	100	somatic	0	4.60789954202378e-06	1.67248437066281e-06
8	5732658	5746688	1	loss	A	-1	germline	1	0.023477223184487	0.0109576498484814
8	25113700	25130536	1	loss	A	-1	germline	1	2.25978095907266e-05	1.31690600216894e-05
8	43237654	43240460	11	gain	-	-1	somatic	0	0.0832652061556325	0.270038026720023
8	43240460	43243266	6	gain	-	-1	somatic	0	0.0832652061556325	0.270038026720023
8	43776406	43782018	4	gain	-	-1	germline	1	0.014308708343738	0.0366382643870778
8	51650042	51703356	2	neutral	AA	11.0495	somatic	0	0.590778704602847	0.94737868586993
8	52452558	52460976	2	neutral	AA	54.5678	somatic	0	0.52009621849853	0.730079029552447
8	53263492	53288746	2	neutral	AA	100	somatic	0	0.349461493086096	0.558773034593405
8	53743318	53796632	2	neutral	AA	72.3095	somatic	0	0.160429112552919	0.434353132202377
8	63216374	63269688	2	neutral	AA	52.7565	somatic	0	0.978136093821527	0.69550483242677
8	64667076	64689524	2	neutral	AA	100	somatic	0	0.524504557159601	0.483133355036516
8	69092138	69201572	2	neutral	AA	100	somatic	0	0.0108791093515293	0.0508881587207193
8	76976998	77063984	2	neutral	AA	31.2262	somatic	0	0.83057360678487	0.437058670586301
8	82892046	82965002	2	neutral	AA	96.6786	somatic	0	0.421802156444911	0.639279090982215
8	86175066	86180678	1	loss	A	-1	somatic	0	0.0143886963848373	0.0368192898049546
8	88363746	88386194	2	neutral	AA	64.0933	somatic	0	0.976485392719719	0.84105415328735
8	91941396	91991904	2	neutral	AA	36.3857	somatic	0	0.86354157951516	0.320904833324134
8	94579036	94609902	2	neutral	AA	36.3786	somatic	0	0.00935190254581558	0.0398909430778718
8	96054992	96456250	2	neutral	AA	25.1269	somatic	0	0.000132711401311419	0.00480289700097858
8	97163362	97183004	2	neutral	AA	54.5678	somatic	0	0.0823021914949849	0.332857803418035
8	101700664	101742754	2	neutral	AA	100	somatic	0	0.422847355147565	0.767226656518302
8	102604196	102674346	2	neutral	AA	14.5007	somatic	0	0.00174824760424306	0.0114873528081852
8	106136950	106170622	2	neutral	AA	86.9728	somatic	0	0.823681544736281	0.990384964089043
8	107377202	107402456	2	neutral	AA	67.5808	somatic	0	0.186888056048358	0.246448063387194
8	114591428	114619488	2	neutral	AA	100	somatic	0	0.985918981808739	0.927663995849716
8	115688574	115800814	2	neutral	AA	15.7621	somatic	0	0.00759958117479782	0.0487684521013383
8	118430036	118522634	2	neutral	AA	69.0615	somatic	0	0.637155468974394	0.861423469853484
8	121334246	121381948	2	neutral	AA	17.2625	somatic	0	0.891537148987902	0.91779219934392
8	121614846	121640100	2	neutral	AA	54.6166	somatic	0	0.723947327423775	0.388269851038601
8	126180208	126183014	1	loss	A	-1	germline	1	0.0832790035160802	0.270061989623257
8	136147120	136152732	1	loss	A	-1	germline	1	0.0143170924293367	0.036656626996761
8	139960474	139963280	0	loss	-	-1	germline	1	0.0832679654795734	0.270042819176505
8	141526222	141557088	2	neutral	AA	8.3618	germline	1	0.228774267053876	0.573088374721755
8	141711418	141717030	2	neutral	AA	22.2426	somatic	0	0.0345445232960854	0.0773515913749496
8	144124578	144127384	4	gain	AAAA	33.6251	germline	1	0.0832665858083439	0.270040422940498
8	145028110	145058976	3	gain	AAB	40.0469	somatic	0	4.70242128596891e-08	4.89909868228722e-09
8	145058976	145067394	3	gain	AAB	100	somatic	0	0.00270125378765405	0.00496026643277414
8	145067394	145070200	4	gain	-	-1	somatic	0	0.0832727944747089	0.270051206124717
9	580842	594872	1	loss	A	-1	germline	1	0.000108036956271401	9.11610839503529e-05
9	3128690	3159556	2	neutral	AA	54.5728	somatic	0	0.0406142892277716	0.0284779389896034
9	12340788	12399714	2	neutral	AA	30.4833	somatic	0	0.519159828412015	0.504298173336282
9	12657866	12666284	2	neutral	AA	100	somatic	0	0.0302092922609609	0.119432957980507
9	12868316	12882346	2	neutral	AA	100	somatic	0	0.230241551734658	0.34768380088278
9	19627970	19639194	2	neutral	AA	36.5438	somatic	0	0.933555532868566	0.996670705461359
9	22431164	22445194	2	neutral	AA	100	somatic	0	0.0131428447726501	0.0500504322069583
9	22908184	22930632	2	neutral	AA	41.2069	somatic	0	0.72923219613987	0.96848033493327
9	23362756	23376786	1	loss	A	-1	germline	1	0.000107963231815622	9.11672008675479e-05
9	28845680	28848486	0	loss	-	-1	germline	1	0.0832727944747089	0.270051206124727
9	32080998	32089416	3	gain	AAB	2.20686	germline	1	0.00270298022031949	0.00496332974700708
9	33795464	33803882	2	neutral	AA	1.0684	germline	1	0.0295865976630495	0.0668305708165399
9	40925510	40928316	6	gain	AAAABB	3.25622	germline	1	0.0832652061556325	0.270038026720023
9	75321458	75349518	2	neutral	AA	100	somatic	0	0.0965306537206559	0.0942072732068691
9	85574582	85692434	2	neutral	AA	36.381	somatic	0	0.0690751053227362	0.125840781111574
9	88142072	88144878	2	neutral	AA	100	somatic	0	0.871775541938833	0.926214345051033
9	94189002	94191808	2	neutral	AA	100	somatic	0	0.200397365603129	0.436014300146236
9	102042996	102045802	2	neutral	AA	100	somatic	0	0.716220553058893	0.857718330176328
9	107601682	107671832	2	neutral	AA	36.4351	somatic	0	0.349217937148477	0.319074154462065
9	113724374	113738404	2	neutral	AA	100	somatic	0	0.424830308301384	0.58956173548527
9	115169464	115292928	2	neutral	AA	100	somatic	0	0.787082600719254	0.445595264505745
9	120596268	120927376	2	neutral	AA	10.4142	somatic	0	0.147098771850512	0.158209007420754
9	121149050	121177110	2	neutral	AA	100	somatic	0	0.287519001009518	0.555869190684467
9	121640100	121645712	2	neutral	AA	100	somatic	0	0.266757248040359	0.445923115470732
9	127658970	127661776	2	neutral	AA	100	somatic	0	0.342587266081919	0.587024874507778
9	127900286	127984466	2	neutral	AA	100	somatic	0	0.071672551580234	0.259785735249013
9	128671936	128688772	2	neutral	AA	100	somatic	0	0.000119953675922489	0.000834936944161369
9	129112478	130768018	1	loss	A	-1	somatic	0	0	0
9	131129992	131144022	2	neutral	AA	100	somatic	0	0.000800371553630218	0.0012288288206922
9	134022978	134031396	2	neutral	AA	21.8336	somatic	0	0.00734239117027545	0.0164756073128337
9	136593274	136610110	2	neutral	AA	11.1292	somatic	0	0.0113694674225213	0.0102798464592554
9	137325640	137328446	4	gain	AAAB	12.9535	germline	1	0.0832665858083439	0.270040422940498
9	137530478	137547314	2	neutral	AA	100	somatic	0	0.12877243483924	0.352803313380964
10	2514176	2536624	2	neutral	AA	10.2957	somatic	0	0.997518686422233	0.97740278060673
10	3398066	3417708	2	neutral	AA	8.21228	somatic	0	0.351474577311319	0.428633162636657
10	16965076	16967882	2	neutral	AA	100	somatic	0	0.885385362157802	0.930999027343774
10	25579496	25621586	2	neutral	AA	54.5677	somatic	0	0.120003994202204	0.259322277124415
10	26570014	26654194	2	neutral	AA	0.321809	somatic	0	0.346709531032911	0.244795082746924
10	26864644	26867450	2	neutral	AA	100	somatic	0	0.647770709206464	0.819483746174952
10	26898316	26946018	2	neutral	AA	3.25022	somatic	0	0.279949180344849	0.387699914019408
10	28393914	28436004	2	neutral	AA	54.5678	somatic	0	0.00109451145810922	0.00526187951775747
10	28814814	28845680	2	neutral	AA	36.3862	somatic	0	0.00416131759419055	0.016757565642447
10	30251486	30271128	2	neutral	AA	100	somatic	0	0.000282879536465442	0.00232107248426761
10	38484290	38526380	2	neutral	AA	0.402523	germline	1	4.55940712132089e-08	3.84717899759579e-08
10	38526380	38529186	16	gain	AAAAAAAAAAAAAABB	13.0949	germline	1	0.0832652061556325	0.270038026720023
10	38574082	38582500	3	gain	AAA	2.04741	germline	1	0.00334694825699706	0.00731844742125642
10	38582500	38835040	2	neutral	AA	0.853051	germline	1	3.43864538971302e-07	5.74489699700642e-07
10	41857102	41899192	25	gain	AAAAAAAAAAAAAAAAABBBBBBBB	21.3507	germline	1	2.20922099460647e-05	1.22894143729235e-05
10	42300450	42320092	2	neutral	AA	1.79937	germline	1	0.000534830241500432	0.00341878923749139
10	42320092	42322898	2	neutral	AA	8.63079	germline	1	0.214689036501446	0.452994282500173
10	44079454	44124350	2	neutral	AA	100	somatic	0	0.236738668056803	0.576605669648922
10	46515062	46559958	5	gain	AAABB	0.556344	germline	1	9.13185329368403e-11	1.38367095559033e-12
10	49795276	49803694	1	loss	A	-1	germline	1	0.00271585098622614	0.0049832167382875
10	55143512	55149124	2	neutral	AA	100	somatic	0	0.930802250158792	0.949428475852286
10	55802922	55870266	2	neutral	AA	100	somatic	0	0.503148064604675	0.632480025852978
10	58317098	58345158	2	neutral	AA	36.3841	somatic	0	0.0989249962295708	0.0783077981037724
10	63157448	63297748	2	neutral	AA	28.0919	somatic	0	0.00652025482348478	0.0082512555366121
10	70385704	70455854	2	neutral	AA	21.8298	somatic	0	0.000674952694903296	0.000360257233158801
10	71611926	71620344	2	neutral	AA	100	somatic	0	0.662325649621994	0.935209199616527
10	72594026	72762386	2	neutral	AA	19.1251	somatic	0	1.00995910287866e-09	7.35933469719896e-09
10	73489140	73528424	2	neutral	AA	36.3786	somatic	0	0.167968543469685	0.308863447181381
10	75588028	75596446	2	neutral	AA	100	somatic	0	0.390953454333613	0.242766363168515
10	84550392	84556004	2	neutral	AA	54.6208	somatic	0	0.731148518883951	0.975407784641757
10	85698046	85759778	2	neutral	AA	90.9389	somatic	0	0.223377206215227	0.137037058568883
10	87058956	87064568	2	neutral	AA	54.6927	somatic	0	0.0488382382173549	0.0821931688094699
10	93543622	93566070	2	neutral	AA	54.6581	somatic	0	0.709026213805214	0.876692381523731
10	108011358	108277928	2	neutral	AA	100	somatic	0	0.905653228370166	0.545759768715163
10	110026066	110054126	2	neutral	AA	100	germline	1	0.652707446861223	0.656336601156261
10	111979042	111998684	2	neutral	AA	54.5873	somatic	0	0.681453357945905	0.683673505031349
10	112068834	112352240	2	neutral	AA	100	germline	1	0.000118014681136899	0.000386038464367355
10	112352240	112357852	0	loss	-	-1	germline	1	0.0143088172002025	0.0366392478942499
10	115329406	115351854	2	neutral	AA	36.379	somatic	0	0.887316102241496	0.635833717820606
10	115924278	115955144	2	neutral	AA	100	somatic	0	0.416131657410593	0.280125141122344
10	116446194	116451806	2	neutral	AA	100	germline	1	0.941871933943422	0.776006009559548
10	117144888	117153306	2	neutral	AA	54.5678	somatic	0	0.388165098648386	0.33077897120531
10	117206620	117212232	2	neutral	AA	54.5679	somatic	0	0.496310933981576	0.399718338665023
10	120349340	120354952	2	neutral	AA	100	somatic	0	0.665889159496173	0.587221831786159
10	124830522	124852970	2	neutral	AA	37.1413	somatic	0	0.0131578046896157	0.0394732000451263
10	133111028	133113834	3	gain	AAB	3.43137	germline	1	0.0832727944747089	0.270051206124717
10	133607690	133613302	2	neutral	AA	27.2839	somatic	0	0.228730030047	0.476729673417092
11	18926470	18948918	4	gain	-	-1	germline	1	2.21007788129506e-05	1.22986549575543e-05
11	18948918	18974172	3	gain	-	-1	germline	1	2.04776299798282e-07	3.09425952638165e-08
11	28988786	28991592	0	loss	-	-1	germline	1	0.0832665858083439	0.270040422940508
11	42945830	42951442	4	gain	-	-1	germline	1	0.0143081640723733	0.0366369530801166
11	54756284	54778732	1	loss	A	-1	germline	1	4.65391957529992e-06	1.68383308785103e-06
11	55006018	55014436	2	neutral	AA	37.978	somatic	0	0.204102953883603	0.234094323468118
11	55182796	55216468	1	loss	A	-1	germline	1	2.15700877745502e-07	3.73467710090836e-08
11	58230112	58280620	2	neutral	AA	6.73728	germline	1	0.67790145784534	0.802263450053807
11	59815502	59868816	2	neutral	AA	100	somatic	0	0.178100128281975	0.272587424833118
11	64274236	64344386	2	neutral	AA	9.52648	somatic	0	1.82299716759605e-07	4.1999895369349e-06
11	68696492	68761030	2	neutral	AA	100	somatic	0	4.08549526685747e-05	0.00181510436871435
11	69731906	69743130	2	neutral	AA	21.8871	somatic	0	0.0515454019708347	0.0509749328564808
11	72888656	72913910	2	neutral	AA	38.0182	somatic	0	0.0129954588365513	0.0130695074026959
11	86177872	86189096	1	loss	A	-1	germline	1	0.0005369986774458	0.000678857556170365
11	90978938	90984550	2	neutral	AA	100	somatic	0	0.249742032988773	0.39370207674122
11	92555910	92561522	2	neutral	AA	54.5678	somatic	0	0.275202796233874	0.377205156551665
11	94705306	94786680	2	neutral	AA	27.3933	somatic	0	0.00122113962600444	0.00223211346323782
11	94901726	94912950	2	neutral	AA	100	somatic	0	0.836476297900399	0.868524655028915
11	98313822	98319434	2	neutral	AA	61.8081	germline	1	0.0798280030508217	0.135750294253474
11	104400036	104402842	0	loss	-	-1	germline	1	0.0832665858083439	0.270040422940508
11	108639902	108642708	2	neutral	AA	100	somatic	0	0.285224900784637	0.530457560987074
11	120326892	120484028	2	neutral	AA	41.4073	somatic	0	0.00015170222299782	5.11793950506156e-05
11	122863516	122894382	2	neutral	AA	27.2843	somatic	0	0.744846613557292	0.786761036544091
11	135035944	135075228	3	gain	AAB	5.80662	somatic	0	9.3132502408813e-09	5.84855386343008e-10
12	2138172	2149396	1	loss	A	-1	germline	1	0.000535674478988758	0.000676203739271242
12	2253218	2256024	5	gain	-	-1	germline	1	0.0832665858083439	0.270040422940498
12	34280902	34407172	3	gain	-	-1	somatic	0	1.38622995580572e-30	0
12	34690578	34696190	1	loss	A	-1	germline	1	0.0143310392001427	0.0367061805954018
12	37541474	37617236	2	neutral	AA	17.6595	somatic	0	0.00271540735960579	0.0119086988618018
12	37617236	37625654	0	loss	-	-1	germline	1	0.0143187261969874	0.0366690919243047
12	37625654	37858552	2	neutral	AA	0.790136	somatic	0	0.00468826979984701	0.0018032317930291
12	41343604	41360440	2	neutral	AA	100	germline	1	0.299863684221482	0.534050543057764
12	49789664	49854202	2	neutral	AA	56.3456	somatic	0	0.123867200316021	0.208587222865588
12	52295422	52390826	3	gain	AAB	1.64849	germline	1	1.16426818141518e-22	0
12	59540514	59551738	1	loss	A	-1	germline	1	0.000545586436076052	0.000709067744296354
12	71126488	71148936	2	neutral	AA	14.2293	germline	1	0.826465613746022	0.773948617444522
12	80894174	80913816	2	neutral	AA	100	somatic	0	0.658828291944858	0.804803396012041
12	81222476	81230894	2	neutral	AA	100	somatic	0	0.0780394793598749	0.192525908141685
12	82067082	82072694	2	neutral	AA	18.1893	somatic	0	0.295069693413621	0.450388302629257
12	82384160	82448698	2	neutral	AA	54.5681	somatic	0	0.182259390863993	0.440097512941816
12	87347974	87390064	2	neutral	AA	100	somatic	0	0.97336370984769	0.954098119884419
12	90092242	90095048	5	gain	AAABB	53.6414	somatic	0	0.0832665858083439	0.270040422940498
12	103625580	103659252	2	neutral	AA	93.3769	somatic	0	0.648699130293135	0.686295419571992
12	124833328	124911896	2	neutral	AA	71.523	somatic	0	8.11876035730414e-08	2.26027128091832e-06
12	126410300	126460808	2	neutral	AA	36.3917	somatic	0	0.131228294138723	0.196130287328763
12	129968308	130004786	2	neutral	AA	49.6821	somatic	0	0.0899313978342685	0.273703151520315
12	130030040	130055294	2	neutral	AA	21.736	somatic	0	0.364468300962598	0.760439612720228
12	130711898	130728734	2	neutral	AA	38.1366	somatic	0	0.936892681613104	0.95218137645029
12	132981952	133038072	2	neutral	AA	68.5986	somatic	0	7.87454409510163e-11	1.05736708277959e-09
12	133214850	133242910	3	gain	AAB	4.42146	somatic	0	4.38204192152543e-08	4.21968660013761e-09
13	21376108	21378914	4	gain	-	-1	germline	1	0.0832686553221325	0.270044017300315
13	22015876	22021488	1	loss	A	-1	germline	1	0.0181678742507171	0.0484300763241817
13	22021488	22024294	10	gain	-	-1	somatic	0	0.0832652061556325	0.270038026720023
13	23056902	23062514	1	loss	A	-1	germline	1	0.0143546015519941	0.0367574365814181
13	31957534	31965952	1	loss	A	-1	germline	1	0.00287533750734108	0.00546627910755182
13	38481484	38487096	1	loss	A	-1	germline	1	0.014338889523997	0.0367183318038972
13	45423528	45426334	4	gain	-	-1	somatic	0	0.0832665858083439	0.270040422940498
13	50493970	50502388	1	loss	A	-1	germline	1	0.0143483803926489	0.0367380439468953
13	52312258	52320676	3	gain	-	-1	germline	1	0.0143168746060746	0.0366481004982825
13	63028372	63059238	3	gain	-	-1	somatic	0	1.86144231513801e-06	3.53410513520558e-07
13	63059238	63067656	4	gain	-	-1	germline	1	0.00270107524869244	0.00496133173675406
13	69827310	69832922	1	loss	A	-1	germline	1	0.014372186451279	0.0367344293610971
13	90210094	90212900	1	loss	A	-1	germline	1	0.0832900427378398	0.270081161063393
13	96063410	96094276	2	neutral	AA	18.4193	somatic	0	0.351714910216206	0.405705255544148
13	97898534	97977102	2	neutral	AA	90.5359	somatic	0	0.0378497028748271	0.149453067082079
13	99147204	99293116	2	neutral	AA	100	somatic	0	0.12263895493094	0.120619297867373
13	101237674	101282570	2	neutral	AA	100	somatic	0	0.832704265417062	0.871104694611176
13	103614356	103681700	2	neutral	AA	39.4911	somatic	0	0.71634482285554	0.331273357154315
13	108867188	108892442	2	neutral	AA	54.5679	somatic	0	0.755139763285586	0.942948179713761
13	111917310	111936952	2	neutral	AA	36.6158	somatic	0	0.341711975063981	0.679916802178929
13	113112666	113118278	2	neutral	AA	54.5678	somatic	0	0.0516969939812598	0.141909063755755
13	114324858	114338888	3	gain	AAB	59.9398	somatic	0	0.000538822007559735	0.000686779514871283
13	114338888	114341694	3	gain	-	-1	somatic	0	0.083282453145554	0.270067980591578
14	16092410	16095216	13	gain	-	-1	somatic	0	0.0832652061556325	0.270038026720023
14	19888928	19902958	2	neutral	AA	100	somatic	0	0.548043039597497	0.734076536342969
14	21578140	21611812	2	neutral	AA	100	somatic	0	0.0287089189467038	0.011405814809162
14	23407652	23421682	2	neutral	AA	54.5678	somatic	0	0.0127516960352312	0.0680315384704229
14	34348246	34351052	0	loss	-	-1	germline	1	0.0832655510670743	0.27003922482833
14	34729862	34755116	2	neutral	AA	54.5678	somatic	0	0.000430248701982549	0.00163065214730351
14	37300158	37302964	1	loss	A	-1	germline	1	0.0832852129324729	0.2700727734361
14	50134802	50143220	2	neutral	AA	100	somatic	0	0.00638030426612036	0.0153128400412532
14	52200018	52208436	2	neutral	AA	100	somatic	0	0.793587653305819	0.932343325913658
14	66008344	66042016	2	neutral	AA	100	somatic	0	0.291374331623407	0.197054518218959
14	68314876	68401862	2	neutral	AA	55.0709	somatic	0	0.117272793940152	0.274013964986236
14	70394122	70405346	2	neutral	AA	18.6428	somatic	0	0.326046575171776	0.638501572586953
14	74022280	74064370	2	neutral	AA	55.0723	somatic	0	8.15643040440804e-07	9.25749433933198e-06
14	79639892	79648310	1	loss	A	-1	germline	1	0.00272018028968966	0.00498809950813195
14	85352908	85383774	2	neutral	AA	100	somatic	0	0.00805130802396314	0.0609323219701029
14	89853732	89887404	2	neutral	AA	54.5678	somatic	0	0.501601417997261	0.584511154263827
14	96271054	96366458	2	neutral	AA	89.7976	somatic	0	0.143504850695363	0.0957534090082977
14	97974296	98019192	2	neutral	AA	100	somatic	0	0.245663383332154	0.226730701392909
14	99927272	99930078	4	gain	AABB	14.09	germline	1	0.0832672756416439	0.270041621056557
14	100614742	100707340	2	neutral	AA	28.4191	somatic	0	0.572178214871661	0.77419393442943
14	103577878	103614356	2	neutral	AA	100	somatic	0	2.009390611018e-05	0.000188709773803808
14	104686248	104792876	2	neutral	AA	94.8965	somatic	0	0.00452462701663858	0.036649193803158
14	106866510	106877734	3	gain	AAB	100	somatic	0	0.000532762736882686	0.000672439752282816
14	106877734	106880540	4	gain	-	-1	somatic	0	0.0832707248775873	0.270047611695054
15	0	17080122	3	gain	AAB	-1	somatic	0	NA	NA
15	17080122	17082928	14	gain	-	-1	germline	1	0.0832652061556325	0.270038026720023
15	17082928	20340694	3	gain	AAB	-1	somatic	0	0.204005271572994	0.278794600977201
15	20340694	20343500	8	gain	AAAAABBB	8.50941	germline	1	0.0832652061556325	0.270038026720023
15	20343500	20671802	3	gain	AAB	0.531527	germline	1	4.31795351732146e-12	2.64233079860787e-14
15	38964116	38983758	2	neutral	AA	58.0998	somatic	0	0.539766414565331	0.656917600592533
15	48364216	48454008	2	neutral	AA	100	germline	1	0.000388096527973899	0.000543040232117153
15	67910812	67930454	2	neutral	AA	100	germline	1	0.984839747550084	0.735891869386066
15	68185800	68233502	2	neutral	AA	39.7563	somatic	0	0.0835084811598273	0.192912757863812
15	71415506	71418312	0	loss	-	-1	germline	1	0.0832741742292719	0.270053602430571
15	76592576	76600994	1	loss	A	-1	germline	1	0.00270874228013383	0.00496959495624116
15	81764034	81960454	2	neutral	AA	46.8777	somatic	0	0.0928788869174556	0.11975594350294
16	844606	847412	3	gain	AAB	6.06964	germline	1	0.0832741742292719	0.270053602430561
16	2031544	2037156	2	neutral	AA	36.3786	somatic	0	0.513981038136521	0.416847097760676
16	2786358	2797582	2	neutral	AA	44.8215	somatic	0	0.00261516266948419	0.00531311423726766
16	6251768	6260186	2	neutral	AA	54.5873	somatic	0	0.0171929280806749	0.0452323988237974
16	8353462	8378716	2	neutral	AA	59.1082	somatic	0	0.501898355992862	0.339086746914278
16	8979200	8984812	2	neutral	AA	36.379	somatic	0	0.0544288362649451	0.143103512380857
16	10859220	10870444	2	neutral	AA	54.5679	somatic	0	0.0262212367134035	0.0158697910523851
16	18999426	19002232	2	neutral	AA	100	somatic	0	0.272694412351041	0.517325803095922
16	21558498	21583752	4	gain	AABB	3.14959	germline	1	2.03613747060371e-07	3.05023030167106e-08
16	22613554	22697734	4	gain	AABB	1.59293	germline	1	1.08843479715423e-20	0
16	26311862	26345534	2	neutral	AA	100	somatic	0	0.934863438381882	0.273896947070934
16	34062034	34064840	22	gain	AAAAAAAAAAAAAABBBBBBBB	9.88121	germline	1	0.0832652061556325	0.270038026720023
16	34076064	34084482	2	neutral	AA	40.4076	germline	1	0.405914707175559	0.688783317474715
16	34084482	34087288	10	gain	AAAAAAABBB	100	germline	1	0.0832652061556325	0.270038026720023
16	34095706	34098512	9	gain	AAAAAABBB	4.01799	germline	1	0.0832652061556325	0.270038026720023
16	34210752	34213558	4	gain	AAAB	100	germline	1	0.0832686553221325	0.270044017300315
16	34901028	34903834	4	gain	-	-1	germline	1	0.0832686553221325	0.270044017300315
16	34903834	34959954	2	neutral	AA	0.449003	germline	1	0.000184332333237002	0.000715099076309067
16	35967308	36087966	2	neutral	AA	3.35569	somatic	0	0.723354238678066	0.941173017783814
16	36121638	36127250	4	gain	-	-1	germline	1	0.0143081640723733	0.0366366252597925
16	51672490	51689326	2	neutral	AA	100	somatic	0	0.0547892852353008	0.194799385324036
16	55766444	55786086	1	loss	A	-1	germline	1	0.000536488712761028	0.000676203739271242
16	58754834	58760446	2	neutral	AA	100	somatic	0	0.317890106813846	0.761887787339146
16	66996056	66998862	2	neutral	AA	100	somatic	0	0.21601277341088	0.454527257540929
16	70150000	70164030	5	gain	AAAAB	6.03796	germline	1	0.000107524940020934	9.08090004969608e-05
16	78685852	78688658	2	neutral	AA	100	somatic	0	0.27646260989965	0.521310543308976
16	82695626	82698432	2	neutral	AA	100	somatic	0	0.173444510622653	0.402545276831365
16	84696304	84738394	2	neutral	AA	36.3795	germline	1	0.00419764167977631	0.0248480822833455
16	85821510	85824316	2	neutral	AA	100	somatic	0	0.242010443066717	0.484162589905812
16	87168390	87345168	2	neutral	AA	12.9844	somatic	0	0.00126650441618839	0.0138203041253742
16	88498434	88504046	4	gain	AAAB	24.309	germline	1	0.0143071844299384	0.0366340027895896
16	89039992	89070858	2	neutral	AA	8.54361	somatic	0	0.60058087942535	0.961676645943671
16	89842508	90055764	2	neutral	AA	100	germline	1	1.5903252203674e-30	0
17	5224772	5258444	2	neutral	AA	100	somatic	0	6.76993005204775e-05	0.00020125590706277
17	6243350	6319112	2	neutral	AA	59.2836	somatic	0	0.00747708316348249	0.0437016332903322
17	10772234	10777846	2	neutral	AA	100	somatic	0	0.0974660671589038	0.154672658900218
17	21291928	21303152	4	gain	AABB	0.310195	germline	1	0.000532107043780842	0.000671021319110787
17	21676350	21855934	3	gain	-	-1	somatic	0	9.66858648162219e-07	2.28233469790062e-07
17	21855934	21858740	5	gain	-	-1	germline	1	0.0832665858083439	0.270040422940498
17	21883994	21968174	1	loss	A	-1	germline	1	1.42381516878511e-17	0
17	21968174	21976592	5	gain	AAABB	-1	germline	1	NA	NA
17	21976592	21982204	12	gain	-	-1	germline	1	0.0143060960077386	0.0366313804836299
17	21982204	21985010	5	gain	AAABB	-1	germline	1	NA	NA
17	21985010	22158982	5	gain	AAABB	0.556894	somatic	0	9.13179061314032e-11	1.38367095559033e-12
17	26808524	26828166	4	gain	-	-1	germline	1	0.000509629828279213	0.000480916430007694
17	26937600	26940406	17	gain	AAAAAAAAAAAABBBBB	9.84253	germline	1	0.0832652061556325	0.270038026720023
17	27417426	27490382	2	neutral	AA	100	somatic	0	0.367533468248078	0.489363940961012
17	32274612	32291448	2	neutral	AA	69.4931	somatic	0	0.166912069150475	0.0627450584160492
17	32333538	32479450	2	neutral	AA	100	somatic	0	4.04008255789765e-09	2.11263975202769e-08
17	39101610	39135282	2	neutral	AA	33.1527	somatic	0	0.0738218918201778	0.117496572503708
17	50757734	50760540	2	neutral	AA	100	somatic	0	0.134252354357403	0.349716696222464
17	60612406	60761124	2	neutral	AA	28.7311	somatic	0	1.04179838414874e-08	1.62968876649128e-06
17	61058560	61072590	2	neutral	AA	54.5679	somatic	0	0.353960108201787	0.432200561095133
17	61372832	61375638	2	neutral	AA	100	somatic	0	0.790528279797716	0.893599534799596
17	64263012	64279848	2	neutral	AA	47.068	somatic	0	0.513872017277535	0.834358685952226
17	68946226	68988316	2	neutral	AA	100	somatic	0	0.392726016625799	0.294071665052821
17	69235244	69238050	2	neutral	AA	100	somatic	0	0.136254887956736	0.352563298419949
17	71407088	71421118	2	neutral	AA	100	somatic	0	0.300234570680395	0.0648572660701462
17	72453726	72470562	2	neutral	AA	100	somatic	0	0.963302447605893	0.995413995051414
17	76811444	76833892	3	gain	AAB	100	germline	1	1.03189835061731e-06	3.03896393716308e-07
18	4413838	4433480	2	neutral	AA	100	somatic	0	0.453237217445349	0.416774187603859
18	5306146	5308952	1	loss	A	-1	germline	1	0.0832831430853387	0.270069178796895
18	13668026	13673638	2	neutral	AA	18.3047	somatic	0	0.854882856501703	0.695272286283497
18	22700540	22714570	2	neutral	AA	36.3824	somatic	0	0.737457361850852	0.741579725012423
18	29109444	29117862	2	neutral	AA	54.5792	somatic	0	0.765417214850457	0.982101682626648
18	29594882	29597688	0	loss	-	-1	germline	1	0.0832655510670743	0.27003922482833
18	31749890	31957534	2	neutral	AA	100	somatic	0	1.031227597043e-05	9.44116249959048e-05
18	37547086	37692998	2	neutral	AA	51.5148	somatic	0	0.0886515369779216	0.00902150816362168
18	44057006	44087872	2	neutral	AA	100	somatic	0	0.142635188309724	0.341763592111929
18	46472972	46548734	2	neutral	AA	100	somatic	0	0.0433118894118172	0.0931003282900082
18	56611050	56740126	2	neutral	AA	100	somatic	0	0.276957454413132	0.466296086958048
18	60977186	61058560	2	neutral	AA	35.4912	somatic	0	0.278899394768499	0.310239938982111
18	62882460	63014342	2	neutral	AA	27.2849	somatic	0	0.497518057363716	0.206292087352057
18	64369640	64383670	2	neutral	AA	54.5678	somatic	0	0.944322523084523	0.874595338472848
18	66056046	66064464	1	loss	A	-1	germline	1	0.0027250757907071	0.00499539838203722
18	72335874	72355516	2	neutral	AA	100	somatic	0	0.688179437019542	0.931564112974821
18	78876660	78899108	2	neutral	AA	8.6048	somatic	0	0.0141438197561307	0.0210819869704493
18	80217928	80260018	3	gain	AAB	5.186	somatic	0	4.38115678236641e-10	1.20429222150165e-11
19	4065894	4082730	2	neutral	AA	54.5678	germline	1	5.39648874116828e-05	9.62785287194068e-05
19	7449930	7452736	10	gain	AAAAAABBBB	11.6917	germline	1	0.0832652061556325	0.270038026720023
19	8920274	8923080	1	loss	A	-1	germline	1	0.0845653853366818	0.272288889174999
19	21558498	21586558	2	neutral	AA	0.383998	germline	1	0.0423492592035843	0.0314644374077565
19	24330826	24381334	4	gain	AABB	0.528048	germline	1	2.00732153652116e-13	4.44089209850063e-16
19	24381334	24403782	4	gain	AABB	3.12916	germline	1	0.000107553240200459	9.08658973465259e-05
19	27338858	27341664	4	gain	AAAB	3.7515	germline	1	0.0832686553221325	0.270044017300315
19	27341664	27344470	2	neutral	AA	95.1776	somatic	0	0.37718687739963	0.618892968121178
19	27344470	27347276	4	gain	AABB	8.64067	germline	1	0.0832686553221325	0.270044017300315
19	27347276	27369724	6	gain	AAAABB	0.200417	germline	1	9.63508098877456e-07	2.2511868957853e-07
19	27375336	27400590	5	gain	AAABB	0.241024	somatic	0	2.03526106582971e-07	3.04789763427848e-08
19	43624882	43661360	2	neutral	AA	21.8604	somatic	0	0.00128228996724951	0.00654592030564094
19	56529676	56535288	2	neutral	AA	100	germline	1	0.272329867266519	0.532419688490912
19	58406890	58463010	2	neutral	AA	100	somatic	0	1.23270966211119e-06	3.27418679112457e-05
19	58552802	58575250	3	gain	AAA	62.8621	somatic	0	1.13483852372837e-06	4.85521488013951e-07
19	58575250	58586474	3	gain	-	-1	somatic	0	0.00064761151260767	0.000874963677313545
20	64538	67344	6	gain	-	-1	germline	1	0.0832652061556325	0.270038026720023
20	527528	538752	2	neutral	AA	36.8537	somatic	0	0.00794329600367624	0.0375331169430296
20	2559072	2573102	2	neutral	AA	100	germline	1	0.0858140515667292	0.0664043954849497
20	3344752	3350364	2	neutral	AA	93.3662	somatic	0	0.0579301265263605	0.120464678917845
20	3611322	3670248	2	neutral	AA	54.5678	somatic	0	0.0264271452548964	0.0143511811425128
20	5014322	5033964	2	neutral	AA	54.85	germline	1	0.00387325337738052	0.0105320633586318
20	12032128	12046158	2	neutral	AA	97.3886	somatic	0	0.463772578907074	0.501831348844776
20	13008616	13011422	2	neutral	AA	100	germline	1	0.501186066450294	0.720957536175806
20	13460382	13544562	2	neutral	AA	100	somatic	0	0.548233739968355	0.224110342568056
20	13558592	13564204	2	neutral	AA	100	somatic	0	0.450812387003206	0.738640626000867
20	13900924	13903730	2	neutral	AA	100	somatic	0	0.183391062512032	0.415137363115921
20	19953466	19973108	2	neutral	AA	54.5853	somatic	0	0.75470116848908	0.693704393511549
20	21305958	21308764	0	loss	-	-1	somatic	0	0.083272104604372	0.270050007977626
20	23542340	23561982	2	neutral	AA	54.8373	somatic	0	0.47460768467576	0.713379583404676
20	24179302	24182108	2	neutral	AA	100	somatic	0	0.473835967086351	0.699960865194009
20	24339244	24344856	2	neutral	AA	100	somatic	0	0.765219502028887	0.668682672068821
20	25862902	25868514	2	neutral	AA	8.44473	somatic	0	0.121470174197837	0.2658465789384
20	26306250	26325892	2	neutral	AA	14.568	somatic	0	0.528451700330088	0.278634554061109
20	26334310	26382012	2	neutral	AA	4.34132	somatic	0	0.189166876477191	0.330080186591897
20	28781142	28786754	7	gain	-	-1	germline	1	0.0143060960077386	0.0366313804836299
20	28803590	28817620	7	gain	-	-1	germline	1	0.00010751729252996	9.08049377316145e-05
20	28817620	28820426	5	gain	-	-1	germline	1	0.0832665858083439	0.270040422940498
20	28820426	28823232	10	gain	-	-1	germline	1	0.0832652061556325	0.270038026720023
20	28870934	28873740	6	gain	-	-1	germline	1	0.0832652061556325	0.270038026720023
20	29263774	29269386	4	gain	-	-1	germline	1	0.0143072932761759	0.0366340027895896
20	29272192	29314282	3	gain	-	-1	somatic	0	1.05930412390918e-07	9.52238621287904e-10
20	29875482	29878288	8	gain	-	-1	germline	1	0.0832652061556325	0.270038026720023
20	29889512	29895124	4	gain	-	-1	germline	1	0.0143065313678531	0.0366320360447225
20	30812686	30815492	8	gain	-	-1	germline	1	0.0832652061556325	0.270038026720023
20	30938956	30941762	5	gain	-	-1	germline	1	0.0832665858083439	0.270040422940498
20	31166242	31169048	4	gain	-	-1	germline	1	0.0832672756416439	0.270041621056557
20	31183078	31188690	13	gain	-	-1	germline	1	0.0143060960077386	0.0366313804836299
20	31188690	31239198	3	gain	AAB	2.13651	germline	1	1.74792722982304e-05	2.42079283724328e-05
20	31239198	31242004	40	gain	AAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBB	100	germline	1	0.0832652061556325	0.270038026720023
20	31242004	31247616	2	neutral	AA	16.4611	germline	1	0.0744488884798143	0.239077148730135
20	31472096	31480514	2	neutral	AA	54.2804	somatic	0	0.0800941423496845	0.127250691481752
20	32381240	32384046	2	neutral	AA	100	germline	1	0.0896398136811282	0.280938980377561
20	35333152	35352794	2	neutral	AA	62.2633	somatic	0	0.223406165225309	0.500358259974895
20	36929766	37008334	2	neutral	AA	36.3837	somatic	0	1.79633027353486e-06	0.000122927189992184
20	37215978	37232814	2	neutral	AA	100	germline	1	0.024883330309232	0.173983086764244
20	39648780	39651586	2	neutral	AA	100	somatic	0	0.373319240272089	0.615406785737537
20	44542444	44598564	2	neutral	AA	100	somatic	0	0.0530043893941381	0.0934370777852145
20	44761312	44766924	2	neutral	AA	13.3505	somatic	0	0.0995364636757091	0.179407847024599
20	45984728	45987534	2	neutral	AA	54.568	somatic	0	0.124619212644688	0.335778591871827
20	45987534	45998758	1	loss	A	-1	germline	1	0.000535705329399089	0.000676784564222266
20	45998758	46015594	2	neutral	AA	65.1446	somatic	0	0.729931857233709	0.847471320579789
20	47561700	47564506	2	neutral	AA	100	somatic	0	0.130823390402118	0.344804677703572
20	48235140	48246364	2	neutral	AA	54.8644	somatic	0	0.959566831334237	0.992721455424236
20	48330544	48529770	2	neutral	AA	100	somatic	0	0.000485545896524307	0.00108999603259086
20	49208822	49211628	2	neutral	AA	100	somatic	0	0.234343942464149	0.475559777773522
20	50575344	50589374	2	neutral	AA	100	somatic	0	0.771334705606587	0.948091536901591
20	51773506	51776312	2	neutral	AA	100	somatic	0	0.479706809128985	0.704523437147327
20	51983956	51986762	2	neutral	AA	100	somatic	0	0.129881585659853	0.343446327843772
20	54688940	54702970	2	neutral	AA	100	somatic	0	0.142600237621144	0.423564307376839
20	55606502	55741190	2	neutral	AA	37.3415	somatic	0	0.73545241734138	0.633482031200071
20	56277136	56361316	2	neutral	AA	10.9154	germline	1	0.20844932676166	0.195292231966741
20	58188022	58199246	2	neutral	AA	64.4281	germline	1	0.107437277005681	0.246093673674399
20	59490006	59504036	2	neutral	AA	54.5693	somatic	0	0.777544179095161	0.774673705577053
20	61030500	61047336	2	neutral	AA	100	somatic	0	0.929248582691522	0.875976857130103
20	61572058	61591700	2	neutral	AA	27.4593	somatic	0	0.34524215910219	0.215599106849978
20	62570994	62579412	2	neutral	AA	16.7263	somatic	0	0.974907512131463	0.837119638459253
20	63575542	63578348	2	neutral	AA	100	somatic	0	0.0874896486852738	0.27729904513271
21	0	8990424	5	gain	AAAAB	-1	somatic	0	2.20928330297417e-05	1.22900741938992e-05
21	8990424	8996036	8	gain	AAAAAABB	3.35823	germline	1	0.0143060960077386	0.0366313804836299
21	8996036	10651576	5	gain	AAAAB	-1	somatic	0	0.00270000424134436	0.00495780372036347
21	10651576	10671218	6	gain	AAAABB	2.36026	germline	1	4.5934288983656e-06	1.66334392681655e-06
21	10671218	10690860	5	gain	AAAAB	4.35009	germline	1	4.59375070991331e-06	1.66334392681655e-06
21	10690860	10693666	47	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBB	79.5583	germline	1	0.0832652061556325	0.270038026720023
21	10693666	10755398	5	gain	AAAAB	0.662879	germline	1	9.24259814009814e-13	3.44169137633799e-15
21	15494732	15559270	2	neutral	AA	54.5678	somatic	0	0.204428012851342	0.355384449307373
21	16218680	16235516	2	neutral	AA	100	somatic	0	0.113684546100765	0.223839059458516
21	16622744	16628356	2	neutral	AA	100	somatic	0	0.301175863460343	0.327217890946148
21	20315440	20329470	2	neutral	AA	100	somatic	0	0.549332737901505	0.333556682551872
21	20713892	20716698	2	neutral	AA	100	somatic	0	0.441148650959312	0.673780062717236
21	21451870	21454676	2	neutral	AA	100	somatic	0	0.376821704070431	0.618550808386765
21	24215780	24218586	2	neutral	AA	100	somatic	0	0.919655599082557	0.942237397540804
21	24737696	24740502	2	neutral	AA	100	somatic	0	0.79474377643228	0.895450574965428
21	25091252	25147372	3	gain	-	-1	germline	1	9.59826600668851e-15	0
21	25147372	25161402	3	gain	AAB	4.83155	germline	1	0.000109245926023641	9.48005203603719e-05
21	29317088	29345148	2	neutral	AA	39.7626	somatic	0	0.235687768311947	0.205161995151736
21	31907026	31949116	2	neutral	AA	100	somatic	0	0.00566654408135349	0.0307197406567221
21	32022072	32033296	2	neutral	AA	6.21603	somatic	0	0.217762702643359	0.205185498519984
21	32311090	32333538	2	neutral	AA	54.5687	somatic	0	0.595716876298483	0.935136770228389
21	32600108	32614138	2	neutral	AA	92.374	somatic	0	0.654516994184189	0.197747324975361
21	34053616	34076064	2	neutral	AA	54.5873	somatic	0	0.162374781988396	0.440065235274517
21	37151440	37157052	2	neutral	AA	41.7497	somatic	0	0.0931540817512762	0.161118531494635
21	37213172	37218784	2	neutral	AA	54.5678	somatic	0	0.127593971390276	0.286621195941239
21	40672970	40675776	2	neutral	AA	100	somatic	0	0.833439516280267	0.911676375191023
21	40706642	40712254	2	neutral	AA	29.6083	somatic	0	0.431404158488385	0.56500865057447
21	40827300	40860972	2	neutral	AA	100	somatic	0	0.376132638006832	0.254557286845335
21	41803788	41806594	3	gain	AAA	5.01744	germline	1	0.083282453145554	0.270067980591578
21	41806594	41873938	2	neutral	AA	100	somatic	0	0.348982039673593	0.183059806432394
21	43335864	43338670	3	gain	AAA	54.6548	germline	1	0.0832769337939548	0.270058395088814
21	44343218	44399338	2	neutral	AA	18.7157	somatic	0	0.00128507713104483	0.00142849893185437
21	45434752	45443170	2	neutral	AA	17.2433	somatic	0	0.546962166662311	0.722136392867595
21	46282164	46290582	2	neutral	AA	13.6241	somatic	0	0.0886266957973903	0.190118273688314
22	10727338	10730144	9	gain	-	-1	germline	1	0.0832652061556325	0.270038026720023
22	11212776	11215582	6	gain	-	-1	somatic	0	0.0832652061556325	0.270038026720023
22	11619646	11630870	4	gain	AABB	20.5672	germline	1	0.014309361493483	0.0366405592730715
22	17877026	17882638	3	gain	AAB	38.4444	somatic	0	0.0148096661129394	0.0381404230805542
22	23289800	24569336	1	loss	A	-1	somatic	0	7.99589700738901e-167	0
22	36957826	36966244	2	neutral	AA	11.9699	somatic	0	0.419058964390692	0.590327546014928
22	38964116	38989370	1	loss	A	-1	germline	1	9.71688795019582e-07	2.2728817206108e-07
22	40078098	40092128	2	neutral	AA	60.2568	somatic	0	0.0232670337227276	0.0491094066590694
22	40131412	40139830	2	neutral	AA	54.5686	germline	1	0.0474276035458813	0.121420406391084
22	43333058	43363924	2	neutral	AA	73.3659	somatic	0	0.0211905843580177	0.00509548324535314
22	45328124	45356184	2	neutral	AA	10.7608	somatic	0	0.00700504022717111	0.0144341764997032
22	47368086	47401758	2	neutral	AA	18.2867	somatic	0	0.853411674473303	0.340765674585904
22	47606596	47623432	2	neutral	AA	18.1961	somatic	0	0.258677688957296	0.653101427452883
22	47800210	47811434	2	neutral	AA	31.9189	somatic	0	0.614708786772767	0.883666116793883
22	49545542	49579214	2	neutral	AA	75.4368	somatic	0	0.196198590007707	0.0968710817154143
X	5241608	5247220	1	loss	A	-1	germline	1	0.0143650846720705	0.0367748647186144
X	18250224	18283896	2	neutral	AA	36.3786	somatic	0	0.73373617097023	0.782632881477067
X	29224490	29314282	2	neutral	AA	93.3662	somatic	0	0.267559112462213	0.171239552686078
X	30554534	30633102	2	neutral	AA	97.9194	somatic	0	0.00720942623825401	0.05057436553845
X	47087486	47090292	1	loss	A	-1	somatic	0	0.0860486432788294	0.274839677324518
X	47090292	47185696	2	neutral	AA	47.0155	somatic	0	0.00164111380623425	0.00726699638494244
X	53187730	53229820	2	neutral	AA	100	somatic	0	0.749533431934285	0.779313063503831
X	53908872	53928514	2	neutral	AA	29.9855	somatic	0	0.107045047820318	0.319631694158408
X	58516324	62691652	2	neutral	AA	0.91984	germline	1	3.9332555272072e-05	0.000454313205840773
X	77858082	77931038	2	neutral	AA	21.8275	somatic	0	0.000220593120720988	0.0205856248805779
X	93540816	93543622	0	loss	-	-1	germline	1	0.0832679654795734	0.270042819176505
X	99784166	99840286	2	neutral	AA	100	germline	1	0.422727463985569	0.282924703921275
X	115402362	115405168	1	loss	A	-1	germline	1	0.083299012978313	0.270096738589969
X	119414942	119616974	2	neutral	AA	7.32621	somatic	0	3.94481760313009e-08	5.69756537460719e-06
X	119740438	119743244	0	loss	-	-1	germline	1	0.0832679654795734	0.270042819176505
X	128211752	128239812	2	neutral	AA	100	somatic	0	0.95105598771377	0.992840311107476
X	130507060	130515478	1	loss	A	-1	germline	1	0.00271345960557698	0.00498328359593936
X	138933478	138998016	2	neutral	AA	100	somatic	0	0.170321415103077	0.401963833022519
X	143953412	144225594	2	neutral	AA	100	somatic	0	0.0772661062794534	0.0955306100886848
X	144506194	144534254	2	neutral	AA	100	somatic	0	0.549785453282509	0.538422706265189
X	148426176	148431788	1	loss	A	-1	somatic	0	0.0144696282081262	0.0369297326812567
X	151125548	151128354	1	loss	A	-1	germline	1	0.083303153353236	0.270103928438806
X	155174606	155188636	1	loss	A	-1	germline	1	0.000536743638672078	0.000681411479044103
X	155561834	155567446	1	loss	A	-1	germline	1	0.0143377989744598	0.0366920633408537
