chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	16611648	16617392	9	gain	-	-1	germline	1	0.014306222455532	0.0366317435691131
1	16628880	16637496	7	gain	-	-1	germline	1	0.0143065665625513	0.0366320890044887
1	16720784	16939056	4	gain	-	-1	somatic	0	2.0358502872835e-07	3.0480000856592e-08
1	31431168	31434040	5	gain	-	-1	germline	1	0.083268151316939	0.270043109546688
1	55662232	55667976	1	loss	A	-1	germline	1	0.0145090088109083	0.0372063039339462
1	103363280	103366152	0	loss	-	-1	somatic	0	0.0832656068696436	0.270039321617417
1	125069856	125164632	3	gain	-	-1	germline	1	4.70629437880741e-06	9.60963793794622e-06
1	125164632	143737856	1	loss	A	-1	somatic	0	1.59299537312126e-30	0
1	150650760	150705328	2	neutral	AA	100	somatic	0	0.000965513656475129	0.00155074529159083
1	152787528	152799016	1	loss	A	-1	somatic	0	0.00142713265878411	0.0015472152125382
1	153468192	153491168	2	neutral	AA	19.9132	somatic	0	0.0375882885330264	0.0917125437545897
1	156727912	156736528	2	neutral	AA	100	germline	1	0.835494402026169	0.851291314169853
1	156770992	156811200	2	neutral	AA	21.9095	somatic	0	0.198698320009703	0.320094322383326
1	160854976	161058888	2	neutral	AA	55.3535	somatic	0	5.74571684738145e-08	2.68915165246852e-07
1	161788376	161949208	2	neutral	AA	100	somatic	0	0.921756188391226	0.500805118685557
1	162934304	162940048	2	neutral	AA	100	somatic	0	0.501193301177833	0.743694602906399
1	166285928	166291672	2	neutral	AA	100	somatic	0	0.281044266624729	0.269228355394738
1	167434728	167460576	2	neutral	AA	100	somatic	0	0.70570427466315	0.799133647376256
1	167991896	168115392	2	neutral	AA	40.5335	somatic	0	0.327596978890031	0.255675731050577
1	179930800	180005472	2	neutral	AA	36.3786	germline	1	0.122661084613045	0.191593387471763
1	180439144	180554024	2	neutral	AA	100	somatic	0	0.0209713861245332	0.0356848812392111
1	186200376	186309512	2	neutral	AA	36.5388	somatic	0	0.0606188576852784	0.218566972419621
1	186685744	186837960	2	neutral	AA	68.4531	somatic	0	0.722144931026039	0.673634578041821
1	191131600	191140216	2	neutral	AA	100	germline	1	0.571301607226833	0.942091297288765
1	191932888	192320608	2	neutral	AA	100	germline	1	0.0210995336450006	0.0502496715486938
1	192817464	192854800	2	neutral	AA	100	somatic	0	0.0832969721763542	0.187110369592723
1	200158296	200425392	2	neutral	AA	100	somatic	0	0.0133296017172944	0.0256862651600979
1	211149440	211155184	2	neutral	AA	100	somatic	0	0.459136984317025	0.376838928321913
1	222677648	222703496	2	neutral	AA	100	somatic	0	0.155761603335333	0.182342146340934
1	227528456	227560048	2	neutral	AA	86.825	somatic	0	0.0311096647961243	0.152606986544687
1	229676712	229685328	1	loss	A	-1	somatic	0	0.00380515421654236	0.00663182651987793
1	229788720	229794464	2	neutral	AA	100	somatic	0	0.993412402297962	0.998429775373204
1	231213232	231218976	2	neutral	AA	100	somatic	0	0.146017284175853	0.207416762351072
1	234096720	234108208	2	neutral	AA	100	somatic	0	0.966005315319545	0.987279050178322
1	234777384	234783128	5	gain	AAABB	2.61125	germline	1	0.0143070253832677	0.0366327798837899
1	236095632	236098504	5	gain	AAAAB	19.525	germline	1	0.0832696053151012	0.270045634854425
1	242623688	242658152	2	neutral	AA	100	somatic	0	0.990032046193009	0.972979822781172
1	247460136	247463008	2	neutral	AA	100	somatic	0	0.391494439942984	0.631611381464221
1	248884648	248893264	2	neutral	AA	54.5704	somatic	0	0.680974890755882	0.863050858921669
2	1829464	1863928	2	neutral	AA	8.13148	somatic	0	0.0500238201523103	0.156589586213195
2	1998912	2007528	2	neutral	AA	11.1781	somatic	0	0.498122989955663	0.354247155422699
2	3179304	3182176	5	gain	AAAAA	6.15127	germline	1	0.083268151316939	0.270043109546688
2	3182176	3185048	2	neutral	AA	56.5675	somatic	0	0.520164666000563	0.734981570933513
2	4827832	4879528	2	neutral	AA	93.3502	somatic	0	0.0127855712401202	0.0437184464020411
2	5020256	5023128	5	gain	AAABB	5.62993	germline	1	0.083268151316939	0.270043109546688
2	6921520	6924392	2	neutral	AA	100	somatic	0	0.844868256692466	0.916157173312731
2	11123256	11149104	2	neutral	AA	36.3786	somatic	0	0.27645004891657	0.483205734422749
2	13541480	13544352	2	neutral	AA	100	somatic	0	0.33296992020667	0.577909124717067
2	16146384	16149256	29	gain	-	-1	germline	1	0.0832652433823144	0.27003805898293
2	34472616	34504208	1	loss	A	-1	germline	1	1.75689387815132e-07	3.03557993186487e-08
2	35750656	35767888	1	loss	A	-1	germline	1	8.29561921878162e-05	3.96204105118647e-05
2	89772976	89781592	5	gain	-	-1	germline	1	0.00270009905436991	0.00495788997691582
2	89781592	89824672	4	gain	-	-1	somatic	0	4.25469969019077e-10	1.03851371946462e-11
2	89824672	89841904	29	gain	-	-1	germline	1	2.20924664876638e-05	1.22898153502859e-05
2	89841904	89850520	4	gain	-	-1	germline	1	0.00270028714697196	0.00495810036988009
2	91410016	91415760	4	gain	-	-1	germline	1	0.0143075989274167	0.0366338162241174
2	109199184	109202056	15	gain	-	-1	germline	1	0.0832652433823144	0.27003805898293
2	172139064	172144808	1	loss	A	-1	germline	1	0.019739233168213	0.0533911655332099
2	241589768	241604128	2	neutral	AA	10.1118	somatic	0	0.375136262901807	0.725094775019944
3	186680	192424	1	loss	A	-1	somatic	0	0.0212309278861132	0.0519108400265719
3	16364656	16376144	2	neutral	AA	1.68652	germline	1	0.0508748131234751	0.116721342124352
3	42158088	42198296	2	neutral	AA	27.4203	somatic	0	0.879327349698655	0.797071592339248
3	49214592	49226080	2	neutral	AA	100	somatic	0	0.302255456874703	0.614222779405413
3	52994144	53005632	1	loss	A	-1	germline	1	0.000828804156411558	0.00152102389784248
3	57072384	57388304	2	neutral	AA	85.0445	somatic	0	0.00350980874311734	0.000474536398840431
3	57388304	58037376	2	neutral	AA	47.6817	somatic	0	3.11714064498066e-36	0
3	58861640	59042576	2	neutral	AA	36.3786	somatic	0	0.0734656662010027	0.309784777853386
3	72518000	72546720	2	neutral	AA	46.4322	somatic	0	0.0200527979085072	0.0979260487268142
3	75723152	76016096	2	neutral	AA	0.296457	germline	1	0.00185236239343844	0.0144536673115478
3	76932264	76963856	2	neutral	AA	100	somatic	0	0.409755464204761	0.441441141143835
3	80011048	80016792	1	loss	A	-1	somatic	0	0.020528277462907	0.0552423877050798
3	83721672	83796344	2	neutral	AA	36.1733	somatic	0	0.607262771198417	0.593146940925063
3	90393328	90413432	2	neutral	AA	1.58555	germline	1	0.707875122783558	0.411679962171537
3	96619824	96622696	0	loss	-	-1	germline	1	0.0832656068696436	0.270039321617417
3	98687664	98696280	1	loss	A	-1	germline	1	0.00299723481476957	0.00599354798623986
3	101361496	101484992	2	neutral	AA	8.62167	germline	1	0.0503314827562253	0.111869845970188
3	105879152	105893512	2	neutral	AA	100	somatic	0	0.312981103361679	0.728948792168572
3	109449048	109474896	2	neutral	AA	54.5678	somatic	0	0.406555897585908	0.781809847556188
3	125308232	125377160	2	neutral	AA	47.0682	somatic	0	0.109139422656458	0.203885679630687
3	131167112	131181472	2	neutral	AA	100	germline	1	0.109458517730647	0.28523741348889
3	135664664	135739336	2	neutral	AA	100	somatic	0	0.962746592510178	0.718494583536619
3	139113936	139116808	10	gain	-	-1	germline	1	0.0832652433823144	0.27003805898293
3	141331120	141374200	2	neutral	AA	100	somatic	0	0.507401419887433	0.689541651693392
3	162807936	162828040	1	loss	A	-1	germline	1	1.97810448452594e-05	6.25628441086601e-06
3	163046312	163052056	0	loss	-	-1	germline	1	0.0143129912338911	0.036644872117142
3	167069984	167184864	2	neutral	AA	54.8373	somatic	0	0.00521193033764502	0.0380503787134435
3	169037304	169186648	2	neutral	AA	50.7094	somatic	0	0.150195538612337	0.259505396252006
3	185453656	185456528	0	loss	-	-1	somatic	0	0.0832776026726304	0.270059524355125
3	189333728	189454352	2	neutral	AA	31.4405	somatic	0	0.937426997796958	0.983686857324719
3	190020136	190023008	0	loss	-	-1	somatic	0	0.0832666973393435	0.270040584256202
3	193156360	193167848	0	loss	-	-1	germline	1	0.0143426234966908	0.036740696761335
4	0	160832	1	loss	A	-1	somatic	0	2.83137614350849e-19	0
4	10207088	10230064	1	loss	A	-1	germline	1	1.54317951251444e-05	4.00941704190583e-05
4	40294160	40297032	4	gain	-	-1	somatic	0	0.0832703323218948	0.270046897514758
4	42761208	42766952	1	loss	A	-1	germline	1	0.0148455892268823	0.0374450857944305
4	45024344	45027216	1	loss	A	-1	somatic	0	0.0833008712505115	0.270099933140348
4	49145664	49151408	77	gain	-	-1	germline	1	0.0143061077548148	0.0366313981365877
4	49651136	49656880	15	gain	-	-1	germline	1	0.0143061077548148	0.0366313981365877
4	62802024	62810640	1	loss	A	-1	germline	1	0.00589989840668194	0.0100868355343233
4	63201232	63204104	0	loss	-	-1	germline	1	0.0832717863509073	0.270049422848363
4	68517304	68623568	1	loss	A	-1	germline	1	1.00935002685215e-15	0
4	69266896	69364544	1	loss	A	-1	somatic	0	5.90036516748494e-06	6.68579219509358e-06
4	70619608	70622480	0	loss	-	-1	germline	1	0.0832656068696436	0.270039321617417
4	106134760	106140504	1	loss	A	-1	germline	1	0.0232626776234635	0.0550566331558163
4	114253904	114259648	1	loss	A	-1	germline	1	0.0239278669742345	0.0537698951651229
4	129142352	129148096	1	loss	A	-1	somatic	0	0.0209117636058717	0.0570815503096599
4	167184864	167193480	1	loss	A	-1	germline	1	0.0101595564512897	0.0193913081721332
4	172503808	172512424	1	loss	A	-1	germline	1	0.00428721973646544	0.00885966516089531
4	186171656	186177400	1	loss	A	-1	somatic	0	0.0264403045300704	0.0531482305388595
5	758208	778312	4	gain	-	-1	germline	1	0.00270028714697196	0.00495810036988009
5	49599440	49602312	202	gain	-	-1	germline	1	0.0832652433823144	0.27003805898293
5	62988704	63014552	1	loss	A	-1	germline	1	9.87911619262842e-07	1.40361666400857e-07
5	82765296	82771040	1	loss	A	-1	germline	1	0.0208917705541616	0.0570201682049629
5	84652200	84660816	1	loss	A	-1	germline	1	0.0181714919035763	0.0484810072968052
5	91203232	91206104	0	loss	-	-1	germline	1	0.0832746944706338	0.270054473567267
5	99009328	99012200	0	loss	-	-1	germline	1	0.0832717863509073	0.270049422848363
5	114989136	114992008	0	loss	-	-1	germline	1	0.0832725133731262	0.270050685521625
5	118050688	118059304	1	loss	A	-1	germline	1	0.0165796677661287	0.0435459115944564
5	120043856	120049600	1	loss	A	-1	germline	1	0.0146445109781472	0.0376491026580444
5	135782416	135785288	0	loss	-	-1	germline	1	0.0832666973393435	0.270040584256202
5	143459272	143487992	2	neutral	AA	18.4057	somatic	0	0.462170068409233	0.779718314722088
5	145285864	145303096	2	neutral	AA	55.0709	somatic	0	0.554313248089708	0.82185739239979
5	145739640	145742512	6	gain	AAAABB	100	somatic	0	0.0832674243255704	0.270041846899285
5	154809416	154907064	2	neutral	AA	100	somatic	0	0.0995859865346501	0.124094731371963
5	156050120	156061608	1	loss	A	-1	germline	1	0.00116942420521613	0.00147604709597537
5	156653240	156696320	2	neutral	AA	54.8373	somatic	0	0.124646900563397	0.330859711489454
5	161931976	161952080	2	neutral	AA	54.5678	somatic	0	0.34897765034609	0.450308046827727
5	165501872	165547824	2	neutral	AA	38.1035	somatic	0	0.69744727866563	0.976932799150274
5	168250376	168270480	2	neutral	AA	54.6866	somatic	0	0.265537129146411	0.558371384198621
5	176791704	176834784	2	neutral	AA	49.4239	somatic	0	0.416261514721368	0.453882680958832
5	178250680	178253552	2	neutral	AA	100	somatic	0	0.446560433967106	0.678194112442574
5	178583832	178586704	5	gain	AAABB	12.0626	germline	1	0.083268151316939	0.270043109546688
5	178681480	178687224	0	loss	-	-1	germline	1	0.0143095491292373	0.0366383073286303
5	179534464	179543080	2	neutral	AA	54.5678	somatic	0	0.523097779761994	0.963750117794524
5	179672320	179741248	2	neutral	AA	77.1521	somatic	0	0.0020808886411669	0.0119916640474027
5	179790072	179792944	2	neutral	AA	100	somatic	0	0.134152064506155	0.349564496745704
5	181045136	181048008	4	gain	AAAB	100	germline	1	0.0832703323218948	0.270046897514758
6	295816	381976	3	gain	AAB	0.780116	germline	1	4.98614339999487e-20	0
6	1565240	1774896	2	neutral	AA	37.8805	somatic	0	0.000270465262454275	0.00332870300125976
6	19891472	19908704	2	neutral	AA	100	somatic	0	0.0925987564517614	0.0700468302343197
6	24535496	24549856	2	neutral	AA	100	somatic	0	0.676836145191001	0.839799013537421
6	25201800	25282216	2	neutral	AA	21.8315	somatic	0	0.00272794389695692	0.0010409707650133
6	27691824	28142728	2	neutral	AA	9.41952	somatic	0	0.140255791259132	0.0690303267416853
6	32488064	32666128	0	loss	-	-1	germline	1	3.43838015669548e-18	0
6	35299752	35311240	2	neutral	AA	100	somatic	0	0.464867806189651	0.147946163227991
6	35785120	35799480	3	gain	AAB	5.09525	germline	1	0.000108947335997448	9.39137857511874e-05
6	38958680	38998888	2	neutral	AA	100	somatic	0	0.231978679921958	0.565536679338365
6	39785816	39808792	2	neutral	AA	55.4747	somatic	0	0.00159075612723691	0.00193941610917148
6	54062528	54071144	1	loss	A	-1	germline	1	0.0145961065695197	0.0374781990526759
6	60231584	60240200	3	gain	-	-1	germline	1	0.00270137413868057	0.00496125724660434
6	73882200	73893688	1	loss	A	-1	germline	1	0.00131880977017769	0.00156163709325685
6	78012136	78037984	2	neutral	AA	100	somatic	0	0.412085452611569	0.491061046876679
6	79166680	79241352	2	neutral	AA	100	somatic	0	0.137297663816328	0.221160475865914
6	80573960	80582576	1	loss	A	-1	germline	1	0.00600131243214525	0.00854863511133797
6	82331624	82354600	2	neutral	AA	54.5678	somatic	0	0.488722299337284	0.925668459589628
6	87854480	87940640	2	neutral	AA	54.724	somatic	0	0.073280825247992	0.224298739092324
6	97860528	98004128	2	neutral	AA	71.4823	somatic	0	0.0480294370753723	0.0842311834649866
6	99009328	103288608	2	neutral	AA	5.15726	somatic	0	2.0193423321287e-11	2.71264122275738e-11
6	103288608	103291480	0	loss	-	-1	germline	1	0.0832805109568986	0.270064575211936
6	103291480	103314456	2	neutral	AA	-1	somatic	0	NA	NA
6	103314456	106910200	2	neutral	AA	9.12718	somatic	0	0.0531611492132892	0.000307773180996396
6	106910200	107260584	2	neutral	AA	11.4447	germline	1	1.42328034724746e-24	0
6	111413496	131910960	2	neutral	AA	2.85114	somatic	0	1.50566802775831e-57	0
6	136822080	137117896	2	neutral	AA	10.7054	somatic	0	0.645716444548383	0.691110016129585
6	154145984	154278096	2	neutral	AA	28.1017	somatic	0	0.136848274271367	0.0126904979820176
6	157308056	157310928	10	gain	AAAAAABBBB	28.0145	germline	1	0.0832652433823144	0.27003805898293
6	157313800	157316672	5	gain	AAABB	5.13018	germline	1	0.083268151316939	0.270043109546688
6	160246112	160257600	2	neutral	AA	100	somatic	0	0.141463090850647	0.478622120167655
6	167259536	167296872	2	neutral	AA	19.806	germline	1	0.0431768849046677	0.0679715600895952
7	439416	468136	2	neutral	AA	7.48054	somatic	0	0.426709188785491	0.701385586973317
7	904680	907552	4	gain	AAAB	41.6063	germline	1	0.0832703323218948	0.270046897514758
7	6048432	6065664	2	neutral	AA	17.2951	somatic	0	0.000738296349284641	0.00057440495230654
7	26333368	26344856	2	neutral	AA	36.3786	somatic	0	0.177189736869919	0.220423235691678
7	26548768	26554512	2	neutral	AA	100	somatic	0	0.428550846984891	0.689540393343706
7	27269640	27275384	2	neutral	AA	54.5678	somatic	0	0.883613949571786	0.742793952765881
7	31388088	31428296	2	neutral	AA	100	somatic	0	0.187733298508964	0.555800379159815
7	32373184	32384672	2	neutral	AA	61.5924	somatic	0	0.240412961064728	0.552660450406518
7	32387544	32404776	2	neutral	AA	36.3788	somatic	0	0.441002537901853	0.232397467468042
7	32482320	32519656	2	neutral	AA	100	somatic	0	0.968798521419693	0.837539029816448
7	49553488	49567848	2	neutral	AA	37.7106	somatic	0	0.214991316695923	0.224543115783171
7	51204888	51227864	2	neutral	AA	36.3786	somatic	0	0.909743625278766	0.99883417932198
7	55165376	55188352	2	neutral	AA	12.9643	somatic	0	0.00130232474800191	0.00785774986895393
7	57485952	57497440	3	gain	AAA	100	somatic	0	0.000566346417110874	0.000781313223829794
7	61044360	61058720	3	gain	-	-1	somatic	0	0.000107753191592037	9.10409836122339e-05
7	61058720	61960528	2	neutral	AA	19.1625	somatic	0	0.0297914484813849	0.150404535454638
7	61960528	62448768	3	gain	AAB	0.36809	somatic	0	6.76413115433615e-11	2.71976885457548e-11
7	64235152	64255256	2	neutral	AA	54.5678	somatic	0	0.832433780702352	0.624992618005026
7	65225992	65228864	0	loss	-	-1	germline	1	0.0832656068696436	0.270039321617417
7	65797520	65823368	3	gain	AAB	0.19959	germline	1	2.09893010170067e-07	3.31609859571813e-08
7	65826240	65966968	2	neutral	AA	21.886	somatic	0	5.07454664389829e-06	6.58522703367304e-07
7	66641888	66817080	2	neutral	AA	100	somatic	0	1.98353692197968e-05	0.000159894647888237
7	68965336	69054368	2	neutral	AA	29.9484	somatic	0	0.451789770583184	0.404530010690843
7	70941272	70961376	2	neutral	AA	100	germline	1	0.300008343248464	0.356235669581011
7	74063136	74212480	2	neutral	AA	23.4435	somatic	0	1.90570136489996e-12	1.33545396963086e-11
7	91947080	92041856	2	neutral	AA	54.8384	somatic	0	0.074874380722981	0.0795471511523355
7	98811160	98834136	2	neutral	AA	92.4395	somatic	0	0.0423815398116187	0.188450527863325
7	100947928	100956544	3	gain	AAB	1.35306	germline	1	0.00270181322942959	0.00496230994821989
7	100956544	100959416	12	gain	AAAAAAAAAAAB	89.8139	germline	1	0.0832652433823144	0.27003805898293
7	100959416	100976648	3	gain	AAB	0.702092	germline	1	2.21323916118902e-05	1.23187053009399e-05
7	102165656	102182888	2	neutral	AA	100	somatic	0	0.0569595926236034	0.0598149875472305
7	109802304	109813792	1	loss	A	-1	germline	1	0.00100815851557252	0.0012060006518686
7	119739424	119750912	2	neutral	AA	100	somatic	0	0.45589129461402	0.59471212878901
7	122528136	122545368	2	neutral	AA	100	somatic	0	0.755423270307889	0.955117404138854
7	123662576	123676936	2	neutral	AA	100	somatic	0	0.103209912289397	0.3846617391897
7	130905760	130920120	2	neutral	AA	100	somatic	0	0.320921513709918	0.447548550266078
7	131663968	131686944	2	neutral	AA	18.1898	somatic	0	0.986123901063651	0.949968369146143
7	134785832	134791576	2	neutral	AA	100	germline	1	0.593502647802644	0.531525877408887
7	143846992	143849864	4	gain	AAAB	63.3701	germline	1	0.0832696053151012	0.270045634854425
7	146532312	146586880	2	neutral	AA	44.003	somatic	0	0.344099946695233	0.78537106272101
7	152394064	152399808	2	neutral	AA	9.09494	germline	1	0.83402746265803	0.946319589009215
7	152399808	152402680	4	gain	AAAB	8.06161	germline	1	0.0832703323218948	0.270046897514758
7	152402680	152408424	9	gain	AAAAAABBB	8.39018	germline	1	0.014306222455532	0.0366317435691131
7	152414168	152417040	2	neutral	AA	15.3838	germline	1	0.191109368230111	0.424704835052046
7	153830064	154599760	2	neutral	AA	11.6472	somatic	0	3.19283777632928e-05	2.57605614674139e-05
7	154599760	154608376	0	loss	-	-1	germline	1	0.0143069106768717	0.0366331253277187
7	154608376	154800800	2	neutral	AA	17.7941	germline	1	0.00147086962717568	0.0140839834263591
7	155326376	155343608	3	gain	AAB	2.70055	germline	1	0.000103166733163233	0.000577682393827939
7	155343608	155349352	1	loss	A	-1	germline	1	0.057840965222451	0.178651623174093
7	155349352	155352224	4	gain	AABB	40.8259	germline	1	0.0832717863509073	0.270049422848352
8	4264920	4267792	0	loss	-	-1	germline	1	0.0832739674329894	0.270053210881077
8	6111616	6114488	0	loss	-	-1	germline	1	0.0832717863509073	0.270049422848363
8	39375120	39527336	1	loss	A	-1	germline	1	6.82586207485003e-31	0
8	42519960	42522832	0	loss	-	-1	germline	1	0.0832688783134492	0.270044372198413
8	43235088	43237960	4	gain	-	-1	germline	1	0.0832710593338301	0.2700481601794
8	43237960	43240832	10	gain	-	-1	germline	1	0.0832652433823144	0.27003805898293
8	43240832	43243704	5	gain	-	-1	germline	1	0.083268151316939	0.270043109546688
8	45977848	45997952	2	neutral	AA	7.79903	somatic	0	0.221524446067645	0.215585724827638
8	46612560	46629792	3	gain	AAB	93.8208	germline	1	2.21509810001625e-05	1.2359889818514e-05
8	51632816	51876936	2	neutral	AA	100	somatic	0	0.444400342251943	0.548382274864236
8	56124624	62055304	2	neutral	AA	26.949	somatic	0	1.44365102479844e-32	0
8	68393808	68442632	2	neutral	AA	27.2839	somatic	0	0.610344869427238	0.412164195576605
8	70556424	70984352	2	neutral	AA	100	somatic	0	0.593864036061488	0.654821976893012
8	70984352	73586384	2	neutral	AA	9.27065	somatic	0	3.79836724080319e-20	1.11022302462516e-16
8	73586384	74094728	2	neutral	AA	100	somatic	0	4.1298622766961e-14	2.665645482125e-13
8	97935200	97992640	2	neutral	AA	100	somatic	0	0.995961869778686	0.999244179045829
8	103087568	111281384	2	neutral	AA	3.70185	somatic	0	4.8376059057672e-18	0
8	111281384	111284256	0	loss	-	-1	somatic	0	0.0832688783134492	0.270044372198413
8	111284256	119707832	2	neutral	AA	10.9769	germline	1	2.10397174467969e-33	0
8	120152992	123217416	2	neutral	AA	8.42451	germline	1	9.39333911114158e-12	1.21389565066465e-11
8	123217416	123504616	2	neutral	AA	100	germline	1	8.66763419594205e-11	1.08503273033023e-09
8	123504616	130742056	2	neutral	AA	22.6907	somatic	0	3.66823036246349e-15	1.56319401867222e-13
8	130742056	138602720	2	neutral	AA	6.09823	somatic	0	5.75587976980333e-108	0
8	138619952	140127752	2	neutral	AA	3.86957	somatic	0	4.11662582541536e-39	0
8	142284624	142482792	2	neutral	AA	17.7559	germline	1	2.14641265412939e-05	0.000639296827871449
8	144125576	144128448	5	gain	AAAAA	26.3294	germline	1	0.083268151316939	0.270043109546688
8	144921120	145044616	2	neutral	AA	34.3338	somatic	0	0.168243674237968	0.213938059372714
9	815648	844368	2	neutral	AA	36.5405	somatic	0	0.0535356581516076	0.0258431960346743
9	959248	967864	2	neutral	AA	100	somatic	0	0.166555118955496	0.296322884991075
9	2369400	2418224	2	neutral	AA	54.5681	somatic	0	0.0496383772236899	0.109085201349116
9	4374056	4376928	2	neutral	AA	100	somatic	0	0.164837709835706	0.391406943700742
9	4408520	4411392	2	neutral	AA	100	somatic	0	0.139886357875645	0.35766590139529
9	7174256	7200104	2	neutral	AA	24.8853	somatic	0	0.677681434517257	0.859833944717328
9	16419224	16427840	2	neutral	AA	100	somatic	0	0.327511077770285	0.393995875654297
9	20652552	20655424	2	neutral	AA	100	somatic	0	0.148799071109675	0.3699818536535
9	22496376	22502120	1	loss	A	-1	somatic	0	0.0181603137463074	0.0479317706067099
9	22927176	22941536	2	neutral	AA	54.5678	somatic	0	0.26753700337424	0.177225693156855
9	26566000	26571744	1	loss	A	-1	somatic	0	0.021106401825665	0.0556810596615259
9	27875632	27878504	2	neutral	AA	54.5678	somatic	0	0.631932852909392	0.810001204041499
9	33794824	33803440	2	neutral	AA	1.14751	somatic	0	0.00367490978449545	0.00810219627647923
9	36270488	36273360	2	neutral	AA	100	somatic	0	0.277798517152192	0.522689769439023
9	38278016	38300992	2	neutral	AA	36.3786	somatic	0	0.337699199301117	0.581784303823111
9	40868560	40871432	4	gain	AABB	72.1545	somatic	0	0.0832710593338301	0.2700481601794
9	40926000	40928872	7	gain	AAAAABB	2.37976	germline	1	0.0832666973393435	0.27004058425619
9	69126168	69129040	0	loss	-	-1	germline	1	0.0832739674329894	0.270053210881077
9	74597328	74608816	2	neutral	AA	54.5678	somatic	0	0.311779005713483	0.549830482375281
9	76909288	76920776	2	neutral	AA	54.5684	somatic	0	0.215236304299626	0.329541313325323
9	79166680	79172424	2	neutral	AA	36.3786	somatic	0	0.187903052245735	0.461022585049396
9	83104192	83167376	2	neutral	AA	28.8587	somatic	0	0.23053441098749	0.285327866605395
9	86705680	86714296	2	neutral	AA	100	somatic	0	0.470791966267365	0.284786813132247
9	87774064	87791296	2	neutral	AA	100	somatic	0	0.105004318827302	0.275354620554136
9	90910288	90961984	2	neutral	AA	54.5679	germline	1	0.0650062736091154	0.171151178443027
9	94563472	94577832	2	neutral	AA	100	somatic	0	0.921824958668258	0.874663507402445
9	95054584	95068944	2	neutral	AA	100	germline	1	0.404074358010417	0.60209360046897
9	98334408	98340152	2	neutral	AA	100	somatic	0	0.715112035500355	0.963605132769848
9	98658944	98661816	2	neutral	AA	100	germline	1	0.799362302700906	0.897507252031446
9	98661816	98716384	2	neutral	AA	6.82389	somatic	0	0.117730414036602	0.225920175380162
9	101953128	101961744	1	loss	A	-1	germline	1	0.00551734431321086	0.00918856314369398
9	103558576	103593040	2	neutral	AA	54.5678	somatic	0	0.377372742260009	0.725068835876477
9	103805568	103808440	1	loss	A	-1	germline	1	0.0833270546953951	0.270145398298835
9	104374224	104400072	2	neutral	AA	36.3786	somatic	0	0.362219069979187	0.428818496618877
9	104563776	104566648	2	neutral	AA	100	somatic	0	0.34738490371238	0.59156352972583
9	112866728	112906936	2	neutral	AA	12.4355	somatic	0	0.969882942922948	0.672002046061635
9	116933480	116999536	2	neutral	AA	22.9129	somatic	0	0.0603475837037152	0.0774485997468348
9	118564776	118567648	2	neutral	AA	100	somatic	0	0.422620611969611	0.658399416077205
9	120681440	120690056	2	neutral	AA	100	germline	1	0.624979543994584	0.716990181036867
9	125156016	125210584	2	neutral	AA	15.7571	somatic	0	2.27341716279383e-05	0.000119973159168785
9	127407664	127410536	1	loss	A	-1	somatic	0	0.120250125203936	0.329315534521815
9	128743144	128777608	2	neutral	AA	54.5694	germline	1	2.29582961526798e-05	1.3645203867374e-05
9	129423808	129438168	3	gain	AAB	0.737227	germline	1	0.000110413565044807	9.53250919247806e-05
9	129438168	129458272	2	neutral	AA	1.4268	germline	1	0.917566253008154	0.9718487161393
9	129854608	129897688	2	neutral	AA	54.5678	somatic	0	0.0248904884488589	0.0350653650757429
9	132996576	133008064	2	neutral	AA	100	somatic	0	0.883982567948011	0.977381998062341
9	134300464	134309080	2	neutral	AA	36.513	somatic	0	0.476559508937653	0.812107877432506
9	135282688	135291304	2	neutral	AA	100	somatic	0	0.0278661766404861	0.0714315712899377
9	136801976	136804848	3	gain	AAB	39.1405	somatic	0	0.0832746944706338	0.270054473567256
9	137014504	137106408	2	neutral	AA	8.1894	somatic	0	0.298145112431633	0.473055996372762
9	137359144	137362016	0	loss	-	-1	germline	1	0.0832710593338301	0.270048160179411
9	137715272	137718144	3	gain	AAB	26.9823	somatic	0	0.0832921449167186	0.270084779328716
10	77544	2682448	2	neutral	AA	2.27176	germline	1	1.40444214075745e-19	0
10	10491416	11947520	2	neutral	AA	4.66271	somatic	0	7.88927554244934e-06	0.00014908303261274
10	11947520	12404168	2	neutral	AA	64.9144	somatic	0	2.91493820207037e-26	0
10	17748960	17783424	2	neutral	AA	100	somatic	0	0.35922927195727	0.358449972589157
10	24259784	24291376	2	neutral	AA	100	germline	1	0.560976338899886	0.629050555435629
10	26568872	26594720	2	neutral	AA	0.615381	germline	1	0.304162903623807	0.621869751543362
10	26623440	26649288	2	neutral	AA	0.54286	somatic	0	0.0175382242119648	0.0180345896576252
10	26925000	26953720	2	neutral	AA	0.933565	germline	1	0.634323745612721	0.4330753444294
10	37439392	37445136	2	neutral	AA	100	somatic	0	0.904585777884288	0.935220100919111
10	38484800	38525008	2	neutral	AA	0.603939	germline	1	2.75175343605014e-10	1.32483468640032e-10
10	38525008	38527880	8	gain	AAAAAAAB	5.86359	germline	1	0.0832659703582581	0.270039321617405
10	38573832	38582448	4	gain	AAAA	100	germline	1	0.002706459036386	0.00497854743002268
10	38582448	38981656	2	neutral	AA	0.456626	somatic	0	1.1930958498429e-11	9.09933239867655e-11
10	41839296	41842168	2	neutral	AA	5.2741	germline	1	0.0915316935290239	0.28411369754454
10	41856528	41899608	32	gain	AAAAAAAAAAAAAAAAAAAAABBBBBBBBBBB	25.944	germline	1	2.20923023284623e-05	1.2289467674842e-05
10	42298816	42321792	3	gain	AAB	1.10734	somatic	0	6.02356030332729e-06	2.06808791652913e-05
10	43309760	43347096	2	neutral	AA	49.4613	somatic	0	0.727313078738792	0.839719624966987
10	46514912	46560864	5	gain	AAABB	0.656026	germline	1	9.1347391467567e-11	1.38411504480018e-12
10	47416720	47456928	2	neutral	AA	100	somatic	0	0.0447920986170392	0.0649633883308512
10	49553488	49570720	2	neutral	AA	100	somatic	0	0.0532404757052253	0.107321424842707
10	53962008	54062528	2	neutral	AA	54.85	somatic	0	0.834420495661947	0.608814645517722
10	55670848	55716800	2	neutral	AA	60.0108	germline	1	0.31520056651086	0.651440726655349
10	56612864	56724872	2	neutral	AA	100	somatic	0	0.898647265099817	0.375021897874475
10	63140920	63169640	2	neutral	AA	100	somatic	0	0.10564767086812	0.204425879762037
10	64126016	64189200	2	neutral	AA	100	somatic	0	0.00140170235236624	0.00337693125852689
10	65022080	65042184	2	neutral	AA	54.5721	somatic	0	0.146835762403272	0.146853832056359
10	88067008	88101472	2	neutral	AA	100	somatic	0	0.698856493487444	0.522284443309197
10	91137176	91188872	2	neutral	AA	54.8373	somatic	0	0.220068322012209	0.144448367965461
10	94256168	94330840	2	neutral	AA	100	somatic	0	0.52139840914739	0.528364516561938
10	97286128	97309104	2	neutral	AA	100	germline	1	0.0122746136823253	0.0345667285420924
10	98928912	98937528	1	loss	A	-1	germline	1	0.00532301987933737	0.00778608024135574
10	103374768	103386256	2	neutral	AA	100	germline	1	0.0491130537059643	0.103704175656165
10	106091680	106177840	2	neutral	AA	20.1313	somatic	0	0.03139855615217	0.11817868843466
10	114279752	114308472	2	neutral	AA	82.3539	somatic	0	0.600141728981023	0.856376783850611
10	116689360	116743928	2	neutral	AA	36.5163	somatic	0	0.106370619277291	0.109714389253262
10	119073120	119096096	2	neutral	AA	100	germline	1	0.00715294911902786	0.0208419553224578
10	133108584	133114328	3	gain	AAB	2.93861	somatic	0	0.0143089755161266	0.0366369253990111
11	5738256	5741128	0	loss	-	-1	germline	1	0.0832717863509073	0.270049422848363
11	28984224	28992840	1	loss	A	-1	germline	1	0.0200963157840197	0.0541873246887878
11	31370856	31376600	1	loss	A	-1	somatic	0	0.0184156464741557	0.0492051164861574
11	54754680	54777656	1	loss	A	-1	germline	1	2.76385900110569e-05	7.80309706482907e-06
11	54921256	54935616	1	loss	A	-1	germline	1	0.000305278887493969	0.000259007954922064
11	55116552	55122296	1	loss	A	-1	somatic	0	0.0201842709223907	0.0508470441953689
11	55188352	55205584	1	loss	A	-1	germline	1	0.00144929902816987	0.00155211023244506
11	55340568	55354928	2	neutral	AA	0.576417	germline	1	0.000403970485356087	0.0024076642331553
11	60682488	60696848	2	neutral	AA	100	germline	1	0.66204675537299	0.445806013288336
11	61389000	61449312	2	neutral	AA	100	somatic	0	0.872440525092178	0.93307200063625
11	66593064	66598808	2	neutral	AA	11.3753	somatic	0	0.573496626787242	0.52479856896175
11	66943448	66946320	1	loss	A	-1	germline	1	0.0833008712505115	0.270099933140348
11	68798760	68965336	2	neutral	AA	24.1491	somatic	0	0.000848913860771066	0.000565545136112955
11	72856896	73006240	2	neutral	AA	64.3011	somatic	0	0.000793914681506636	0.00175925740595184
11	82222488	82308648	2	neutral	AA	43.7919	somatic	0	0.504496691339693	0.932035590120952
11	90562776	90571392	2	neutral	AA	54.5678	somatic	0	0.800491429683758	0.395120935052116
11	93452008	93480728	2	neutral	AA	100	somatic	0	0.167370893585731	0.131917496770348
11	93747824	93805264	2	neutral	AA	100	somatic	0	0.000189575288712896	6.18050371666845e-05
11	97932328	97955304	2	neutral	AA	100	somatic	0	0.75639006837229	0.490834883520749
11	102113960	102248944	2	neutral	AA	21.9016	somatic	0	0.148347986534899	0.163881302735084
11	104400072	104402944	0	loss	-	-1	germline	1	0.0832732404004869	0.270051948199196
11	104942880	104962984	2	neutral	AA	100	somatic	0	0.956193290966289	0.73906827561421
11	106220920	106378880	2	neutral	AA	19.5529	somatic	0	0.00689118355670048	0.0946439490143655
11	116017312	116025928	2	neutral	AA	100	somatic	0	0.336832244672396	0.658728839588489
11	119549872	119572848	2	neutral	AA	100	somatic	0	0.576656902485482	0.867648242481616
11	119759528	119768144	2	neutral	AA	54.846	somatic	0	0.097439339723685	0.276133023145251
11	123283472	123294960	2	neutral	AA	100	somatic	0	0.277264102478498	0.569233565810383
11	130331360	130360080	2	neutral	AA	100	somatic	0	0.171484387055723	0.563411714955715
11	130859808	130900016	2	neutral	AA	100	somatic	0	0.0607183998476477	0.330029179623963
11	132054560	132060304	4	gain	AAAB	8.06887	germline	1	0.0143075989274167	0.0366338162241174
11	132215392	132241240	2	neutral	AA	36.4128	somatic	0	0.00187338664132565	0.00882376948779284
11	132580136	132597368	2	neutral	AA	100	somatic	0	0.651087538954071	0.609799194866318
11	134587664	134665208	2	neutral	AA	7.7189	somatic	0	0.0046877416869459	0.0716827002292975
12	2254520	2257392	6	gain	AAAABB	13.8077	germline	1	0.0832666973393435	0.27004058425619
12	3219512	3233872	2	neutral	AA	54.5678	somatic	0	0.411903534607169	0.254274777655004
12	7987032	8010008	2	neutral	AA	100	somatic	0	0.00519353982678444	0.0219200944911773
12	10037640	10181240	2	neutral	AA	12.1657	somatic	0	0.0816687112705534	0.0552001750126294
12	14196296	14259480	2	neutral	AA	54.6202	somatic	0	0.331723340859187	0.639011843770293
12	14922912	14928656	2	neutral	AA	100	somatic	0	0.473371799287177	0.726357815237765
12	17097016	17154456	2	neutral	AA	36.3786	somatic	0	0.0379700824893641	0.181833504358286
12	19285480	19296968	2	neutral	AA	100	somatic	0	0.201468741194787	0.214914015224452
12	30247904	30342680	2	neutral	AA	2.39584	somatic	0	9.70333134714649e-05	0.000275564597583267
12	33234784	33240528	1	loss	A	-1	germline	1	0.0167850352462986	0.041145005190679
12	33369768	33389872	2	neutral	AA	27.6004	somatic	0	0.392256445374031	0.175063970498774
12	34659296	37858704	2	neutral	AA	1.10326	somatic	0	0.0430776359614142	0.0032637702592716
12	38884008	38906984	2	neutral	AA	30.5943	somatic	0	0.763341573751264	0.898712546938373
12	40133328	40584232	2	neutral	AA	7.34613	somatic	0	2.60807526676076e-06	4.19553612462931e-06
12	43484952	43565368	2	neutral	AA	54.7241	germline	1	0.668109472932563	0.374582211535493
12	46382800	46440240	2	neutral	AA	54.8585	germline	1	0.257273075646877	0.508985175789557
12	46882528	46902632	2	neutral	AA	100	somatic	0	0.226115280633279	0.35380484095018
12	48849848	49053760	2	neutral	AA	75.3708	somatic	0	0.00173287244470111	0.000902693632174323
12	52744280	52841928	2	neutral	AA	14.6966	somatic	0	0.000818142166077301	0.00299551642146378
12	53809792	54019448	2	neutral	AA	62.7218	somatic	0	0.145132739860899	0.402966146088025
12	70478880	70484624	1	loss	A	-1	germline	1	0.0191110668515596	0.044645882616666
12	72271008	72276752	2	neutral	AA	100	germline	1	0.517629441934962	0.72405758484987
12	82265568	82412040	2	neutral	AA	20.4923	somatic	0	0.140781895423044	0.200449193942844
12	96476224	96519304	2	neutral	AA	100	somatic	0	0.0256335785191475	0.12613791798884
12	104244984	104270832	2	neutral	AA	100	somatic	0	0.003057156139788	0.025126120385961
12	105086480	105109456	2	neutral	AA	100	somatic	0	0.983647786533797	0.885767557252821
12	108745408	108768384	2	neutral	AA	54.5758	germline	1	0.0361920082047658	0.00460913526111262
12	111008544	111255536	2	neutral	AA	52.688	germline	1	0.0115720148449401	0.0546539055096715
12	112585272	112680048	2	neutral	AA	64.5961	somatic	0	0.0512469561688846	0.0152120935731335
12	124320264	124334624	2	neutral	AA	11.7394	somatic	0	0.0439040659821018	0.293089527284857
12	130423264	130451984	2	neutral	AA	54.8554	somatic	0	0.78541792841313	0.717465348336325
12	132238368	132269960	2	neutral	AA	7.87314	somatic	0	0.0169955132857205	0.0841291680323684
13	20580752	20833488	2	neutral	AA	100	somatic	0	0.0422640108402088	0.0711139645432692
13	22019624	22022496	0	loss	-	-1	germline	1	0.0832656068696436	0.270039321617417
13	29504056	29515544	2	neutral	AA	54.603	somatic	0	0.013469048152826	0.0716782654697401
13	33837904	33869496	2	neutral	AA	27.2842	somatic	0	0.103505283796769	0.10379775414156
13	33964272	34013096	2	neutral	AA	54.9167	somatic	0	0.27668662421335	0.437004746140392
13	38918472	38975912	2	neutral	AA	54.5873	somatic	0	0.43894915665615	0.299573080293466
13	50498376	50501248	0	loss	-	-1	germline	1	0.0832688783134492	0.270044372198413
13	63028912	63063376	3	gain	AAB	0.337837	germline	1	7.26310038004155e-09	5.27265608951666e-09
13	63063376	63069120	5	gain	AAABB	0.822684	germline	1	0.0143073695073232	0.0366338162241174
13	72161872	72181976	2	neutral	AA	100	somatic	0	0.0748154583460045	0.156621646685887
13	79307408	79428032	2	neutral	AA	35.5015	somatic	0	0.524601931381782	0.461897699313383
13	88868296	88874040	2	neutral	AA	54.5678	somatic	0	0.939531814094499	0.992751764639234
13	89158368	89210064	2	neutral	AA	22.1486	somatic	0	0.372189671513276	0.548259924337654
13	92337672	92357776	2	neutral	AA	100	somatic	0	0.534646342855629	0.23121338179543
13	94724304	94770256	2	neutral	AA	100	germline	1	0.591661424096849	0.608404066160114
13	98601504	98607248	1	loss	A	-1	germline	1	0.020176514932321	0.0491743132413927
13	106034240	106476528	2	neutral	AA	32.8815	somatic	0	0.000109443774462233	0.000123654833906084
14	0	16091816	3	gain	AAB	-1	somatic	0	NA	NA
14	16091816	16094688	12	gain	-	-1	germline	1	0.0832652433823144	0.27003805898293
14	16094688	18659384	3	gain	AAB	-1	somatic	0	NA	NA
14	18659384	19957528	3	gain	AAB	0.357412	germline	1	7.1858395865398e-30	0
14	35136048	35144664	1	loss	A	-1	germline	1	0.00419193858247328	0.00780866903793331
14	35945952	35948824	4	gain	AAAA	6.84048	germline	1	0.0832710593338301	0.2700481601794
14	36508864	36546200	2	neutral	AA	54.5682	somatic	0	0.0397223243932891	0.0693402001801956
14	38935704	38944320	2	neutral	AA	100	germline	1	0.124484190666653	0.0762693859779404
14	41141400	41193096	1	loss	A	-1	germline	1	1.65515827478642e-11	7.70494779089859e-14
14	44243160	44251776	1	loss	A	-1	germline	1	0.00641256931482263	0.00976483895257141
14	53077432	53169336	2	neutral	AA	100	germline	1	0.337297920799072	0.43177926309671
14	53870104	53890208	2	neutral	AA	100	somatic	0	0.495595147787544	0.526053673931134
14	57261936	57319376	2	neutral	AA	100	germline	1	0.501329549026227	0.525937957508767
14	77736424	77842688	2	neutral	AA	62.2015	somatic	0	3.0303309439365e-05	8.08964452135852e-05
14	79640560	79649176	1	loss	A	-1	germline	1	0.00434004136440786	0.00917257163320284
14	83319592	83394264	2	neutral	AA	41.1043	somatic	0	0.00761042830404962	0.0429215561917767
14	96401552	96436016	2	neutral	AA	27.3415	somatic	0	0.0147795541355435	0.0101939468432224
14	96479096	96527920	2	neutral	AA	100	somatic	0	0.015817576084347	0.0211999840771844
14	99925496	99928368	5	gain	AAABB	6.91799	somatic	0	0.0832688783134492	0.270044372198402
14	101709008	101726240	2	neutral	AA	43.3255	germline	1	0.0058527424019883	0.0041416071861754
14	103076080	103084696	2	neutral	AA	27.5955	somatic	0	0.35067372767092	0.51305517570135
15	0	17079784	5	gain	-	-1	somatic	0	NA	NA
15	17079784	17082656	14	gain	-	-1	germline	1	0.0832652433823144	0.27003805898293
15	17082656	20339504	5	gain	-	-1	somatic	0	0.841557811809837	0.881413116962253
15	20339504	20342376	8	gain	-	-1	germline	1	0.0832666973393435	0.27004058425619
15	20342376	20672656	5	gain	-	-1	germline	1	2.00745227646612e-13	4.44089209850063e-16
15	22220664	22252256	3	gain	AAB	1.215	germline	1	4.61565764952091e-06	1.67498207936934e-06
15	23843344	24592936	2	neutral	AA	30.3214	somatic	0	0.534200130997268	0.381966130418534
15	25758968	25776200	2	neutral	AA	100	somatic	0	0.865647363806934	0.95045172803805
15	26316136	26336240	1	loss	A	-1	germline	1	1.83296130354558e-05	6.44745619615694e-06
15	33458800	33473160	2	neutral	AA	54.5678	somatic	0	0.96018692189775	0.968434242976842
15	34438152	34521440	1	loss	A	-1	germline	1	8.50534800726794e-18	0
15	35199232	35265288	2	neutral	AA	55.4647	somatic	0	0.861329753906453	0.327190591894194
15	43347096	44142640	2	neutral	AA	10.9143	somatic	0	2.64304328492787e-08	4.10909872794463e-09
15	51164680	51167552	2	neutral	AA	100	somatic	0	0.57842876430475	0.775729135978598
15	52233064	52319224	2	neutral	AA	19.2024	somatic	0	0.239437953896533	0.0576657800431307
15	53996472	54010832	2	neutral	AA	100	somatic	0	0.58834943410357	0.262795130313625
15	57896648	57908136	2	neutral	AA	54.5777	somatic	0	0.56059330798678	0.652592073598736
15	59289568	59298184	2	neutral	AA	43.6894	somatic	0	0.414776582916542	0.691499291960662
15	60024800	60027672	2	neutral	AA	100	germline	1	0.728723691619236	0.864140555631876
15	68353600	68356472	2	neutral	AA	100	germline	1	0.899806210081541	0.935912979326878
15	68543152	68546024	2	neutral	AA	100	somatic	0	0.860360721476603	0.922041133658092
15	69456448	69467936	2	neutral	AA	100	somatic	0	0.111148381748808	0.16294755819106
15	70639712	70642584	2	neutral	AA	100	germline	1	0.842246582633241	0.915146686459888
15	71415152	71418024	1	loss	A	-1	germline	1	0.0833896310215218	0.270254032120457
15	74554248	74663384	2	neutral	AA	36.5699	somatic	0	0.708311153598244	0.143182508768035
15	76593368	76601984	1	loss	A	-1	germline	1	0.00377695241136095	0.00664098280278225
15	78520480	78968512	2	neutral	AA	42.216	germline	1	4.97935116834871e-07	2.46184965080332e-07
15	93334256	93337128	2	neutral	AA	54.5678	somatic	0	0.357583320752492	0.601036709136119
15	98317176	99020816	2	neutral	AA	26.3264	germline	1	0.107260677628054	0.222111954863359
15	99032304	99526288	2	neutral	AA	14.7478	germline	1	0.00461834214537362	0.00419057252834654
16	531320	551424	2	neutral	AA	100	somatic	0	0.0736822260260487	0.299177544435008
16	844368	847240	4	gain	AAAA	7.60236	germline	1	0.0832703323218948	0.270046897514758
16	1025304	1028176	4	gain	AAAA	19.0923	germline	1	0.0832696053151012	0.270045634854425
16	4646896	4655512	2	neutral	AA	36.3786	somatic	0	0.535156717517286	0.400729755491117
16	8219664	8271360	2	neutral	AA	100	somatic	0	0.0205855954045604	0.0981807483028084
16	13644872	13659232	2	neutral	AA	100	somatic	0	0.178408794582791	0.290271378565201
16	17688648	17697264	2	neutral	AA	100	somatic	0	0.315733504930601	0.198182221884537
16	19311328	19322816	2	neutral	AA	100	somatic	0	0.0357528951304687	0.0501764410770614
16	19532472	19564064	2	neutral	AA	43.365	somatic	0	0.032165187872398	0.0117334364964758
16	21522768	21583080	5	gain	AAABB	2.98489	germline	1	4.32311111614788e-08	4.12444578490323e-09
16	22614128	22700288	5	gain	AAABB	1.01726	somatic	0	1.08807938853777e-20	0
16	25328168	25331040	0	loss	-	-1	germline	1	0.0832717863509073	0.270049422848363
16	25331040	25333912	1	loss	A	-1	germline	1	0.121591397334146	0.331309313912548
16	25333912	25443048	2	neutral	AA	55.655	somatic	0	0.49265111784374	0.259302431241064
16	26646416	26655032	2	neutral	AA	54.5678	somatic	0	0.643024005652217	0.904378118981338
16	30718912	30747632	2	neutral	AA	21.9539	somatic	0	0.362211810155167	0.310940741591116
16	34061920	34064792	24	gain	AAAAAAAAAAAAAAAABBBBBBBB	14.9288	germline	1	0.0832652433823144	0.27003805898293
16	34076280	34084896	2	neutral	AA	54.9978	germline	1	0.019153653737526	0.0626653948854551
16	34084896	34087768	11	gain	AAAAAAAABBB	100	germline	1	0.0832652433823144	0.27003805898293
16	34087768	34096384	2	neutral	AA	17.7659	germline	1	0.83401368418918	0.642519303569827
16	34096384	34099256	11	gain	AAAAAAABBBB	1.9125	germline	1	0.0832652433823144	0.27003805898293
16	34173928	34176800	5	gain	AAABB	1.70294	germline	1	0.0832696053151012	0.270045634854425
16	34191160	34214136	3	gain	AAB	0.68599	somatic	0	0.00233784086715612	0.00411134545589709
16	34219880	35084352	2	neutral	AA	0.827668	somatic	0	2.79807824764388e-12	1.60071955690455e-12
16	36124016	36126888	5	gain	-	-1	germline	1	0.083268151316939	0.270043109546688
16	63140920	63181128	2	neutral	AA	39.1686	somatic	0	0.423508000929493	0.591204527899609
16	70151472	70162960	3	gain	AAB	4.15539	germline	1	0.000532932958433977	0.000672039654609269
16	78336672	78351032	1	loss	A	-1	germline	1	0.00021355629023089	0.000249851388317679
16	83534992	83566584	2	neutral	AA	54.5678	somatic	0	0.302877246066808	0.290405362653958
16	83848040	83873888	2	neutral	AA	54.5678	somatic	0	0.975336838975112	0.925304143771227
16	84485624	84494240	2	neutral	AA	67.6768	germline	1	0.942459372949265	0.982038356010933
16	87440912	87616104	2	neutral	AA	19.07	germline	1	0.413841076980002	0.22350981721182
16	89615016	89635120	2	neutral	AA	8.41945	somatic	0	0.461001112914974	0.322231582295602
17	672048	674920	2	neutral	AA	100	somatic	0	0.595167360267716	0.786749415675512
17	738104	792672	2	neutral	AA	46.5102	somatic	0	0.0883177344288807	0.0627034722509985
17	1990296	1993168	2	neutral	AA	100	somatic	0	0.886492469676794	0.931403196067587
17	2398120	2400992	2	neutral	AA	100	somatic	0	0.36310249023461	0.606136014691538
17	2780096	2788712	2	neutral	AA	36.3787	somatic	0	0.0602161535595586	0.0902708898319662
17	6074280	6082896	2	neutral	AA	54.5678	somatic	0	0.227467570592349	0.588799068441644
17	7447096	7507408	2	neutral	AA	27.3247	somatic	0	0.00123829759215008	0.000341080202180377
17	9107112	9112856	2	neutral	AA	100	somatic	0	0.306568879611736	0.483141481274809
17	9491960	9494832	2	neutral	AA	100	somatic	0	0.231588912347906	0.472446683784857
17	9520680	9523552	2	neutral	AA	100	somatic	0	0.717242486573942	0.858251933972257
17	10006048	10017536	2	neutral	AA	54.579	somatic	0	0.0445195154434243	0.06775008128958
17	10319096	10321968	2	neutral	AA	100	somatic	0	0.1489916190168	0.370245334030854
17	11350144	11353016	2	neutral	AA	100	somatic	0	0.417673421474765	0.654218175603897
17	12165792	12191640	2	neutral	AA	94.3693	somatic	0	0.0254448401349221	0.0385256595141186
17	12343856	12358216	2	neutral	AA	100	somatic	0	0.0636171811185319	0.124312534912009
17	14546680	14552424	2	neutral	AA	55.5045	somatic	0	0.749888140103592	0.929584140918767
17	18099344	18136680	2	neutral	AA	49.6645	somatic	0	0.998585394790206	0.770580592340347
17	20560648	20563520	2	neutral	AA	100	somatic	0	0.678912167697497	0.837477815852726
17	21290136	21304496	4	gain	AABB	0.241434	germline	1	0.000107546638918436	9.08244798910607e-05
17	21674984	21855920	4	gain	-	-1	germline	1	1.2166273831529e-06	7.29491188788955e-07
17	21855920	21858792	6	gain	-	-1	germline	1	0.0832674243255704	0.270041846899285
17	21884640	21967928	1	loss	A	-1	germline	1	3.45925489073786e-12	2.22044604925031e-16
17	21967928	21982288	16	gain	-	-1	germline	1	0.00269986917967027	0.00495760946569379
17	21985160	21990904	7	gain	-	-1	germline	1	0.014306795971287	0.0366327798837899
17	22123016	22131632	6	gain	-	-1	germline	1	0.00270003635949641	0.00495788997691582
17	22131632	22154608	6	gain	AAAABB	0.285414	germline	1	9.6360826957809e-07	2.25129784925393e-07
17	22157480	22160352	4	gain	AAAB	10.9186	germline	1	0.0832717863509073	0.270049422848352
17	22708904	22717520	2	neutral	AA	25.7065	somatic	0	0.222172574049247	0.510450877186307
17	26784272	26804376	3	gain	-	-1	germline	1	5.47950563943865e-06	3.57950123308637e-06
17	26807248	26827352	4	gain	-	-1	germline	1	2.21159532111572e-05	1.23253278115909e-05
17	26827352	26879048	3	gain	-	-1	somatic	0	1.36496930837001e-11	1.65799596274496e-11
17	26936488	26939360	13	gain	AAAAAAAAABBBB	7.56883	germline	1	0.0832652433823144	0.27003805898293
17	27462064	27467808	2	neutral	AA	7.25512	somatic	0	0.242284145620584	0.357413755828582
17	35331344	35334216	2	neutral	AA	100	somatic	0	0.627606517067638	0.807283064455546
17	41138528	41190224	2	neutral	AA	7.57227	germline	1	0.120534276736081	0.192996243607126
17	41589432	41595176	2	neutral	AA	36.3915	somatic	0	0.312492219685834	0.710136906785311
17	41629640	41638256	2	neutral	AA	17.5015	somatic	0	0.103122983522799	0.212182343976059
17	41724416	41730160	2	neutral	AA	100	somatic	0	0.0371579589442636	0.0752119596519039
17	42014488	42017360	2	neutral	AA	100	germline	1	0.527207332699495	0.740105848948544
17	44105304	44111048	2	neutral	AA	100	germline	1	0.46928568587559	0.61169058555602
17	44372400	44381016	2	neutral	AA	54.5698	somatic	0	0.677715174199351	0.812064998719951
17	46905504	46908376	2	neutral	AA	100	somatic	0	0.954241426710165	0.952352699309813
17	50305952	50478272	2	neutral	AA	36.038	somatic	0	0.0129190278058932	0.00634161947922185
17	51334128	51337000	2	neutral	AA	100	somatic	0	0.847112663569928	0.917053025573522
17	51730464	51733336	2	neutral	AA	100	somatic	0	0.871676504043148	0.926212620275363
17	52948192	52951064	2	neutral	AA	100	somatic	0	0.654013854040473	0.823179525047079
17	53465152	53468024	2	neutral	AA	100	somatic	0	0.548211037080965	0.75510147255412
17	55196968	55202712	2	neutral	AA	100	germline	1	0.068753630827256	0.170873212326965
17	56831136	56845496	2	neutral	AA	100	somatic	0	0.369889868186835	0.770783008549988
17	57824848	57830592	2	neutral	AA	100	somatic	0	0.0844818574735193	0.115635231576271
17	57968448	58023016	2	neutral	AA	14.2441	somatic	0	0.578613641299079	0.428548531409635
17	59335520	59344136	2	neutral	AA	54.5678	somatic	0	0.943736158052088	0.853154235741235
17	61199448	61205192	2	neutral	AA	100	somatic	0	0.691111031023616	0.939487612221571
17	62698632	62767560	2	neutral	AA	39.7648	somatic	0	0.844068057308633	0.654795402201404
17	62885312	62905416	2	neutral	AA	100	somatic	0	0.212408082495426	0.2012832088149
17	63097840	63100712	2	neutral	AA	100	somatic	0	0.234800047315895	0.476067950847589
17	64588408	64691800	2	neutral	AA	30.125	germline	1	9.88753740159616e-10	5.34495114834499e-10
17	68132456	68146816	2	neutral	AA	39.181	somatic	0	0.0212629480383091	0.0324821894655604
17	69617280	69660360	2	neutral	AA	100	somatic	0	0.317670039561311	0.274214864003014
17	70924040	70926912	2	neutral	AA	100	somatic	0	0.712818368074567	0.855935660956037
17	72767864	72770736	2	neutral	AA	100	somatic	0	0.823562394618923	0.907708830781429
17	75191832	75194704	2	neutral	AA	100	somatic	0	0.1330942822887	0.348055241865131
17	75381384	75407232	2	neutral	AA	54.5678	somatic	0	0.0102649577998828	0.0435371520319904
17	76044816	76047688	2	neutral	AA	100	somatic	0	0.524608207246291	0.738218325655611
17	79387824	79399312	2	neutral	AA	100	somatic	0	0.171594729786344	0.246547600071138
17	80105824	80154648	2	neutral	AA	27.1473	somatic	0	0.606639788456058	0.663592879741869
17	80697456	80703200	2	neutral	AA	6.34556	somatic	0	0.129968973392145	0.201330037204519
17	80927216	80932960	2	neutral	AA	46.779	somatic	0	0.0263102488084359	0.0729255302031356
17	81418328	81426944	2	neutral	AA	100	germline	1	0.0820124079111254	0.277770240425809
17	82142072	82144944	2	neutral	AA	100	somatic	0	0.333063723831282	0.577959931946535
17	82213872	82254080	2	neutral	AA	63.7482	somatic	0	0.138280280266851	0.463949431497947
17	82756680	82822736	2	neutral	AA	23.6407	somatic	0	0.159534498231438	0.198935729446726
17	82825608	82865816	2	neutral	AA	13.5293	somatic	0	0.491640166341787	0.490487836106932
18	56678920	56744976	2	neutral	AA	100	somatic	0	0.0391534565053734	0.055863192263259
18	57023560	57026432	3	gain	AAB	12.3009	somatic	0	0.0832746944706338	0.270054473567256
18	57327992	57399792	2	neutral	AA	24.6882	somatic	0	0.130141792592715	0.165648456336921
18	57735816	57741560	2	neutral	AA	100	somatic	0	0.393820985707905	0.64323007799944
18	59240744	59249360	2	neutral	AA	100	somatic	0	0.396189939993175	0.790673874537875
18	66056000	66064616	1	loss	A	-1	germline	1	0.00614895567291408	0.00894483616289932
18	73241744	73261848	2	neutral	AA	54.6354	somatic	0	0.671580331675268	0.391412986121887
18	73503096	73580640	2	neutral	AA	36.2151	somatic	0	0.342917635468194	0.393498697047918
19	1539392	1542264	2	neutral	AA	100	somatic	0	0.16451572309785	0.39098157612438
19	2889232	2900720	2	neutral	AA	100	somatic	0	0.309991899773708	0.491408319256999
19	2915080	2932312	2	neutral	AA	87.8015	somatic	0	0.134230384905994	0.0953651940462579
19	2961032	2963904	2	neutral	AA	100	somatic	0	0.125504016273913	0.337076806442105
19	3233872	3262592	2	neutral	AA	12.7751	somatic	0	0.00724224449370681	0.00970840270824325
19	3440656	3457888	2	neutral	AA	27.284	somatic	0	0.280082855930185	0.466028412744931
19	4023672	4029416	2	neutral	AA	54.5678	somatic	0	0.7526749971999	0.979265138310534
19	4066752	4069624	2	neutral	AA	100	somatic	0	0.156443058568466	0.380305823722023
19	6832488	6838232	2	neutral	AA	36.6183	somatic	0	0.238780259288211	0.536776428015215
19	7409760	7449968	2	neutral	AA	54.5678	somatic	0	5.20799792741039e-05	4.31604318252843e-05
19	7449968	7452840	11	gain	AAAAAAABBBB	8.39472	germline	1	0.0832652433823144	0.27003805898293
19	8684928	8702160	2	neutral	AA	100	germline	1	0.0400968631126922	0.120251381637327
19	8885968	8917560	2	neutral	AA	1.93247	germline	1	0.300707302638137	0.541387397828602
19	9603968	9621200	2	neutral	AA	54.5678	somatic	0	0.373401959190419	0.855989822277115
19	10606296	10609168	2	neutral	AA	54.5678	somatic	0	0.259463872969557	0.50323224403621
19	11531080	11565544	2	neutral	AA	41.3791	somatic	0	0.000291899732184134	0.00115310579333006
19	12636800	12642544	2	neutral	AA	100	somatic	0	0.123500246167029	0.266956352436772
19	12932616	12990056	2	neutral	AA	6.28299	somatic	0	0.000613481685898853	0.00205161974937884
19	13857400	13883248	2	neutral	AA	36.3787	somatic	0	0.0124331890436607	0.0268192048950023
19	18099344	18217096	2	neutral	AA	61.3451	somatic	0	2.00307509966646e-06	1.62392231384256e-06
19	19911576	19954656	2	neutral	AA	100	germline	1	0.869077737023261	0.983355992604969
19	19974760	20063792	2	neutral	AA	36.3786	germline	1	0.547851335886368	0.183286835473439
19	20379712	20428536	2	neutral	AA	4.74697	somatic	0	0.664541301843971	0.374762810815037
19	21517024	21585952	2	neutral	AA	0.33964	germline	1	0.568061941415697	0.488154944265898
19	23653792	23659536	2	neutral	AA	21.8272	somatic	0	0.159257366168591	0.262829068342857
19	24331584	24406256	4	gain	AABB	0.213387	germline	1	2.1576653021052e-17	0
19	27298360	27324208	2	neutral	AA	3.66286	somatic	0	0.69040114913731	0.698283599882242
19	27329952	27338568	2	neutral	AA	31.4626	somatic	0	0.717411908880717	0.915138384005799
19	27338568	27341440	4	gain	AAAB	4.11008	germline	1	0.0832703323218948	0.270046897514758
19	27344312	27347184	4	gain	AABB	30.4998	germline	1	0.0832703323218948	0.270046897514758
19	27347184	27370160	6	gain	AAAABB	0.185775	germline	1	9.6365782536882e-07	2.25138277021308e-07
19	27375904	27384520	4	gain	AAAB	3.07688	germline	1	0.00270022444810766	0.00495810036988009
19	27384520	27398880	5	gain	AAABB	0.368583	germline	1	0.000107534547816529	9.08180565734051e-05
19	29613192	29616064	2	neutral	AA	100	somatic	0	0.87251751271632	0.926467669434841
19	32117576	32120448	2	neutral	AA	100	germline	1	0.588440335104209	0.782371477987184
19	34975216	34986704	2	neutral	AA	93.1191	somatic	0	0.197893456837319	0.133561219758333
19	35451968	35457712	2	neutral	AA	100	germline	1	0.0770455955845149	0.145749135757617
19	36652464	36655336	2	neutral	AA	100	somatic	0	0.246973800921813	0.489627222150309
19	37313024	37315896	2	neutral	AA	54.5678	somatic	0	0.586004031808406	0.780773885035351
19	40259696	40262568	2	neutral	AA	100	somatic	0	0.0986805780426304	0.295862055122495
19	42387848	42405080	2	neutral	AA	54.5686	somatic	0	0.154248777977113	0.0524957191538696
19	43461976	43519416	2	neutral	AA	10.3728	somatic	0	0.000949973708121059	0.00998512125308748
19	47477032	47491392	2	neutral	AA	40.1008	somatic	0	0.0496625981407095	0.179741718487194
19	48568392	48769432	2	neutral	AA	12.34	somatic	0	3.40182276880158e-11	3.345751453665e-10
19	51759184	51764928	2	neutral	AA	100	somatic	0	0.181138570570498	0.272148525554064
19	52428360	52451336	2	neutral	AA	44.4031	germline	1	0.036652548500487	0.0193400930298134
19	53413456	53416328	1	loss	A	-1	somatic	0	0.122740726778913	0.333011160389063
19	56328536	56354384	2	neutral	AA	100	somatic	0	0.320827637070323	0.450180971245469
19	56354384	56360128	1	loss	A	-1	germline	1	0.017714567196503	0.0470586980281806
19	57012072	57020688	2	neutral	AA	49.4779	somatic	0	0.301436499624374	0.700949703283018
19	58270008	58272880	2	neutral	AA	100	germline	1	0.142304351046489	0.361040702452017
20	60312	63184	7	gain	-	-1	germline	1	0.0832666973393435	0.27004058425619
20	66056	68928	3	gain	-	-1	germline	1	0.0833023257114744	0.270102458835943
20	1611192	1614064	0	loss	-	-1	germline	1	0.0832856006523387	0.270073414377278
20	5264376	5281608	2	neutral	AA	36.3787	somatic	0	0.0585280466230931	0.0444461439318158
20	9089880	9092752	2	neutral	AA	100	somatic	0	0.216833399183107	0.455511097980442
20	9664280	9710232	2	neutral	AA	54.8597	somatic	0	0.226617776407823	0.0742275495644884
20	13768368	13771240	2	neutral	AA	100	somatic	0	0.372727547376277	0.614873720721489
20	21304496	21307368	1	loss	A	-1	somatic	0	0.0833015984784216	0.270101195985996
20	21511280	21522768	2	neutral	AA	54.5678	somatic	0	0.1913781850865	0.226873167287835
20	26316136	26321880	1	loss	A	-1	somatic	0	0.0200261002375519	0.0486708954004111
20	28780312	28788928	7	gain	-	-1	germline	1	0.0143065665625513	0.0366320890044887
20	28803288	28872216	7	gain	-	-1	germline	1	2.03510552310361e-07	3.04709483200938e-08
20	28872216	29262808	3	gain	-	-1	somatic	0	0.0856821934711513	0.056290253614535
20	29262808	29265680	10	gain	-	-1	germline	1	0.0832652433823144	0.27003805898293
20	29265680	29346096	3	gain	-	-1	germline	1	2.01314585507474e-10	1.04636299624872e-11
20	29409280	29412152	5	gain	-	-1	germline	1	0.0832696053151012	0.270045634854425
20	29693608	29696480	3	gain	-	-1	somatic	0	0.083305961953881	0.270108773150378
20	29699352	29702224	0	loss	-	-1	germline	1	0.0832761485613483	0.270056998952577
20	29888904	29891776	4	gain	-	-1	somatic	0	0.0832710593338301	0.2700481601794
20	29891776	29894648	6	gain	-	-1	somatic	0	0.0832674243255704	0.270041846899285
20	30150256	30153128	4	gain	-	-1	somatic	0	0.0832717863509073	0.270049422848352
20	30813688	30816560	9	gain	-	-1	germline	1	0.0832652433823144	0.27003805898293
20	30940056	30942928	6	gain	-	-1	germline	1	0.0832666973393435	0.27004058425619
20	31066424	31075040	39	gain	-	-1	germline	1	0.0143061077548148	0.0366313981365877
20	31161200	31164072	3	gain	-	-1	somatic	0	0.0833336015981556	0.270156765461182
20	31164072	31166944	5	gain	-	-1	somatic	0	0.0832696053151012	0.270045634854425
20	31172688	31178432	1	loss	A	-1	somatic	0	0.0194661049941036	0.0493450567925152
20	31184176	31189920	19	gain	-	-1	germline	1	0.0143063371570605	0.0366320890044887
20	31189920	31238744	3	gain	AAB	26.1751	somatic	0	0.000108805028533915	9.36290675522811e-05
20	31238744	31241616	11	gain	AAAAAAABBBB	96.5071	germline	1	0.0832652433823144	0.27003805898293
20	31241616	31244488	48	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	91.132	germline	1	0.0832652433823144	0.27003805898293
20	31244488	31247360	2	neutral	AA	6.45902	germline	1	0.828337483761862	0.909648173875507
20	33364024	33547832	2	neutral	AA	35.2885	somatic	0	1.13057386306225e-13	2.22044604925031e-15
20	34553032	34561648	2	neutral	AA	54.568	somatic	0	0.574233742879191	0.589275163777208
20	36836272	36839144	2	neutral	AA	100	somatic	0	0.576622312661517	0.774512667837582
20	43005328	43065640	2	neutral	AA	23.5511	somatic	0	0.037661437303869	0.0341665978238347
20	43642912	43645784	0	loss	-	-1	germline	1	0.0832666973393435	0.270040584256202
20	50673568	50699416	2	neutral	AA	27.2839	germline	1	0.0278165280224593	0.0235853383108956
20	60085112	60737056	2	neutral	AA	5.99046	germline	1	1.85797804394309e-15	1.1000311772591e-11
20	61351664	62152952	2	neutral	AA	11.85	germline	1	5.03556741338332e-13	1.12580074151936e-08
21	0	8989360	7	gain	AAAAABB	-1	somatic	0	0.000532051937674076	0.000670975872636759
21	8989360	10738408	7	gain	AAAAABB	0.205372	somatic	0	5.56614816734588e-24	0
21	10752768	10755640	13	gain	AAAAAAAABBBBB	8.29161	germline	1	0.0832652433823144	0.27003805898293
21	15761536	15830464	2	neutral	AA	13.6526	somatic	0	0.0494231218616369	0.176617524939908
21	18277408	18283152	2	neutral	AA	54.5792	somatic	0	0.0637090998895043	0.119112562640601
21	18369312	18372184	2	neutral	AA	100	germline	1	0.556789274053876	0.761022521046756
21	20474488	20477360	2	neutral	AA	100	somatic	0	0.624809835402736	0.80557073059415
21	21054632	21089096	2	neutral	AA	100	somatic	0	0.657119294556374	0.418062974567065
21	22479144	22522224	2	neutral	AA	45.8142	somatic	0	0.902692038362146	0.998095109773751
21	22846760	22884096	2	neutral	AA	54.5873	somatic	0	0.0357072008993933	0.0228427444337376
21	24294248	24325840	2	neutral	AA	41.4954	somatic	0	0.648507954424381	0.654501528442613
21	26879048	27157632	2	neutral	AA	100	germline	1	0.00251194327167084	0.000234100710247653
21	30991752	31003240	2	neutral	AA	100	somatic	0	0.306365288248502	0.530634151115103
21	31571896	31574768	2	neutral	AA	100	somatic	0	0.236028055501462	0.477449163004161
21	31784424	31787296	3	gain	AAB	9.2883	somatic	0	0.0832783297359844	0.270060787062852
21	31916536	31948128	2	neutral	AA	21.8271	germline	1	0.684263209553216	0.628561109206175
21	37129216	37132088	2	neutral	AA	100	somatic	0	0.889453824624907	0.932433887039621
21	37740952	37758184	2	neutral	AA	13.7594	somatic	0	0.594915128450243	0.71728242747402
21	38211960	38266528	2	neutral	AA	54.6167	somatic	0	0.0241802734306844	0.104867421489534
21	39139616	39191312	2	neutral	AA	100	somatic	0	0.191463395248288	0.628260337669062
21	39535952	39590520	2	neutral	AA	55.4285	somatic	0	0.0814960970852181	0.0257555773317316
21	39745608	39759968	2	neutral	AA	100	somatic	0	0.881071557305147	0.954101972058534
21	40673264	40676136	2	neutral	AA	100	somatic	0	0.535068125242161	0.745842518338646
21	41804832	41807704	3	gain	AAB	14.967	somatic	0	0.0832732404004869	0.270051948199185
21	42910552	42913424	2	neutral	AA	100	germline	1	0.22465195887411	0.464526037380361
21	43278168	43281040	1	loss	A	-1	somatic	0	0.0979158113513376	0.294618024230472
21	43332736	43338480	2	neutral	AA	70.6144	somatic	0	0.426689844444749	0.699475986511775
21	45242616	45256976	2	neutral	AA	95.5567	germline	1	0.938092199750194	0.361996846611111
21	46058264	46069752	2	neutral	AA	27.3743	germline	1	0.445607697627015	0.653208293561569
21	46250688	46290896	2	neutral	AA	15.3914	somatic	0	0.600001586617232	0.834070129124394
21	46356952	46359824	2	neutral	AA	100	somatic	0	0.602976135702464	0.791801646173205
22	11625856	11628728	4	gain	AABB	30.7579	germline	1	0.0832703323218948	0.270046897514758
22	17875328	17878200	4	gain	AAAA	2.14174	germline	1	0.0832703323218948	0.270046897514758
22	18136680	18142424	3	gain	AAB	10.0262	germline	1	0.0143670129751773	0.0367812372370137
22	18142424	18148168	1	loss	A	-1	germline	1	0.0287149740477603	0.0557979132651477
22	22901328	22904200	4	gain	AAAB	36.3078	germline	1	0.0832696053151012	0.270045634854425
22	24940448	24989272	2	neutral	AA	36.3986	somatic	0	0.00629397411666572	0.00476798800661504
22	29119208	29122080	3	gain	AAB	10.2709	somatic	0	0.0832979623902986	0.270094881800841
22	36574920	36580664	2	neutral	AA	100	germline	1	0.349841943744737	0.489996243523959
22	36580664	36747240	2	neutral	AA	25.4344	germline	1	0.216619503082982	0.352522184467994
22	36750112	36752984	1	loss	A	-1	germline	1	0.0841083333406754	0.271499274640728
22	38964424	38990272	1	loss	A	-1	germline	1	6.67390403468511e-07	1.3232582152245e-07
22	45414936	45429296	2	neutral	AA	54.8373	somatic	0	0.192171282740761	0.249116506749295
22	48533928	48545416	2	neutral	AA	27.2857	somatic	0	0.747939564897461	0.816724472313669
22	49165768	49188744	2	neutral	AA	15.6253	somatic	0	0.0677642063387114	0.104898023596431
22	50265744	50285848	2	neutral	AA	24.3867	somatic	0	0.668753903480819	0.394153591269954
22	50641976	50644848	3	gain	AAB	8.39682	germline	1	0.0832725133731262	0.270050685521613
X	3523944	3526816	2	gain	-	-1	germline	1	0.687061968224936	0.842011963730707
X	70915424	70921168	0	loss	-	-1	germline	1	0.0143109258834639	0.0366400348047847
X	93543912	93546784	0	loss	-	-1	germline	1	0.0832666973393435	0.270040584256202
X	115307928	115310800	0	loss	-	-1	somatic	0	0.0832717863509073	0.270049422848363
X	131870752	131873624	0	loss	-	-1	germline	1	0.0832666973393435	0.270040584256202
X	141379944	141385688	0	loss	-	-1	somatic	0	0.0143244701916195	0.0366856659568737
Y	0	3845608	0	loss	-	-1	somatic	0	1.05573944033967e-58	0
Y	3851352	10112312	0	loss	-	-1	somatic	0	0	0
Y	10143904	10655120	0	loss	-	-1	somatic	0	2.92506340775428e-16	0
Y	10655120	10657992	6	gain	-	-1	germline	1	0.0832674243255704	0.270041846899285
Y	10657992	10660864	0	loss	-	-1	somatic	0	NA	NA
Y	10663736	10666608	0	loss	-	-1	somatic	0	NA	NA
Y	10666608	10669480	3	gain	-	-1	germline	1	0.0832841464279307	0.270070888879906
Y	10669480	10747024	0	loss	-	-1	somatic	0	NA	NA
Y	10747024	10752768	2	gain	-	-1	germline	1	0.114806838809973	0.256927459846127
Y	10752768	10755640	4	gain	-	-1	germline	1	0.0832703323218948	0.270046897514758
Y	10758512	10761384	6	gain	-	-1	germline	1	0.0832666973393435	0.27004058425619
Y	10761384	10764256	4	gain	-	-1	germline	1	0.0832717863509073	0.270049422848352
Y	10764256	10767128	2	gain	-	-1	germline	1	0.125615890867243	0.337240594224056
Y	10767128	10772872	3	gain	-	-1	germline	1	0.0143440030574847	0.0367005413827696
Y	10775744	10778616	4	gain	-	-1	germline	1	0.0832696053151012	0.270045634854425
Y	10784360	10795848	2	gain	-	-1	germline	1	0.109424666256025	0.13291187932439
Y	10795848	10798720	5	gain	-	-1	germline	1	0.083268151316939	0.270043109546688
Y	10798720	10807336	2	gain	-	-1	germline	1	0.224494616511641	0.16861355366993
Y	10807336	10810208	0	loss	-	-1	somatic	0	NA	NA
Y	10821696	10827440	2	gain	-	-1	germline	1	0.420576981913838	0.699754834639181
Y	10844672	10847544	3	gain	-	-1	germline	1	0.0834937666153077	0.270434738000915
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Y	10896368	10919344	0	loss	-	-1	somatic	0	2.22230108944932e-05	1.25252430998035e-05
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Y	10925088	10927960	4	gain	-	-1	germline	1	0.0832696053151012	0.270045634854425
Y	10933704	10939448	3	gain	-	-1	germline	1	0.0228379202780144	0.0632307798691532
Y	10965296	10971040	0	loss	-	-1	somatic	0	NA	NA
Y	10971040	10973912	3	gain	-	-1	germline	1	0.083320508209268	0.270134031485562
Y	10979656	10985400	2	gain	-	-1	germline	1	0.0441368708431568	0.0936610761257922
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Y	10988272	10991144	3	gain	-	-1	germline	1	0.0835455094156004	0.270524491849034
Y	10991144	10999760	2	gain	-	-1	germline	1	0.00615705325506967	0.00976822178405967
Y	10999760	11002632	6	gain	-	-1	germline	1	0.0832666973393435	0.27004058425619
Y	11002632	11005504	0	loss	-	-1	somatic	0	NA	NA
Y	11011248	11014120	0	loss	-	-1	somatic	0	NA	NA
Y	11014120	11016992	14	gain	-	-1	germline	1	0.0832652433823144	0.27003805898293
Y	11039968	11292704	0	loss	-	-1	somatic	0	4.24128073388151e-10	1.02279296143593e-11
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Y	11332912	11531080	0	loss	-	-1	somatic	0	5.36452530378605e-12	2.45914399954472e-13
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Y	11533952	11643088	0	loss	-	-1	somatic	0	NA	NA
Y	11643088	11645960	13	gain	-	-1	somatic	0	0.0832652433823144	0.27003805898293
Y	11645960	11686168	0	loss	-	-1	somatic	0	4.25636455247801e-10	1.04170005954529e-11
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Y	11689040	11691912	6	gain	AAAABB	30.0878	germline	1	0.0832674243255704	0.270041846899285
Y	11714888	11717760	3	gain	AAA	23.1803	germline	1	0.0833466966536481	0.270179500833199
Y	11720632	11723504	41	gain	AAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBB	100	germline	1	0.0832652433823144	0.27003805898293
Y	11729248	11737864	2	gain	AA	16.6378	somatic	0	0.492431972892487	0.485807784833544
Y	11743608	11746480	2	gain	AB	26.9809	germline	1	0.087366595648137	0.277091540627256
Y	11746480	11749352	10	gain	AAAAAAABBB	6.25521	germline	1	0.0832652433823144	0.27003805898293
Y	11749352	26637800	0	loss	-	-1	somatic	0	0	0
Y	26637800	26640672	5	gain	AAAAB	100	germline	1	0.0832696053151012	0.270045634854425
Y	26640672	56825392	0	loss	-	-1	somatic	0	0.0255907144574891	0.0546818448628947
Y	56825392	56831136	15	gain	AAAAAAAAAABBBBB	4.5199	germline	1	0.0143061077548148	0.0366313981365877
Y	56831136	56836880	32	gain	AAAAAAAAAAAAAAAAAAAAABBBBBBBBBBB	20.1876	germline	1	0.0143061077548148	0.0366313981365877
Y	56836880	56851240	9	gain	AAAAAABBB	4.99882	germline	1	0.00269995276840096	0.00495788997691582
Y	56851240	57227415	0	loss	-	-1	somatic	0	NA	NA
