chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	5669346	5672240	4	gain	-	-1	germline	1	0.0832794200721726	0.27006269573973
1	16611560	16637606	9	gain	-	-1	germline	1	0.000532184875967165	0.000671085853494069
1	16721532	16724426	4	gain	-	-1	germline	1	0.083281549345504	0.270066393651185
1	26132820	26138608	0	loss	-	-1	germline	1	0.0143067741020008	0.03663341316016
1	55663196	55668984	1	loss	A	-1	germline	1	0.0172318622551725	0.0455599811260967
1	72289226	72347106	1	loss	A	-1	germline	1	3.96537973992468e-13	6.66133814775094e-16
1	125162606	125165500	6	gain	-	-1	germline	1	0.0832772908429404	0.270058997865235
1	151249122	151304108	2	neutral	AA	36.419	somatic	0	0.285684844629086	0.337517804398467
1	152105746	152114428	2	neutral	AA	100	somatic	0	0.301561242119519	0.505890602253013
1	152788730	152797412	1	loss	A	-1	germline	1	0.00518690451535305	0.00828601092379033
1	156174710	156189180	2	neutral	AA	9.09488	somatic	0	0.585224523045195	0.81503004184547
1	157462540	157468328	2	neutral	AA	36.3786	somatic	0	0.0919244129535273	0.275017880521205
1	158484122	158539108	2	neutral	AA	100	somatic	0	0.963399672857126	0.827906446899831
1	162547298	162576238	2	neutral	AA	55.5044	somatic	0	0.88140569554404	0.67795886880598
1	166124282	166132964	2	neutral	AA	100	somatic	0	0.81692906767051	0.996492889584381
1	168636274	168725988	2	neutral	AA	21.8308	somatic	0	0.00233203694851688	0.00373448142098831
1	169258484	169272954	1	loss	A	-1	germline	1	0.000244594874487735	0.000240450901150879
1	172447672	172453460	2	neutral	AA	100	germline	1	0.352439434289456	0.77681015671764
1	179998118	180064680	2	neutral	AA	26.1438	somatic	0	0.785590563242925	0.854906320075575
1	182785040	182805298	2	neutral	AA	36.3793	somatic	0	0.82348661547864	0.750214160376792
1	187745356	187754038	1	loss	A	-1	germline	1	0.0166047979212036	0.0436285080373471
1	193950092	193979032	2	neutral	AA	67.0163	somatic	0	0.852100726623149	0.866068788109717
1	196485236	196496812	2	neutral	AA	100	germline	1	0.650305115164496	0.451612217914435
1	196771742	196826728	1	loss	A	-1	germline	1	0.000197133821741148	0.000201409834338473
1	200939102	200965148	2	neutral	AA	100	somatic	0	0.208477446674886	0.0514208569906631
1	204365598	204371386	2	neutral	AA	100	somatic	0	0.0779697174792991	0.145010508351911
1	205676580	205685262	2	neutral	AA	100	somatic	0	0.142597247670384	0.383447709126434
1	208396940	208408516	2	neutral	AA	100	somatic	0	0.628014544028874	0.824977693624432
1	212257536	212376190	2	neutral	AA	46.8768	somatic	0	0.016340697403541	0.00737111217976261
1	215684032	215686926	1	loss	A	-1	somatic	0	0.121528216130426	0.331216295061877
1	216578278	216792434	2	neutral	AA	100	somatic	0	0.329850298006863	0.500353276745495
1	228067458	228073246	1	loss	A	-1	germline	1	0.0194142553148515	0.0523640788806565
1	234775750	234781538	5	gain	AAABB	11.6707	germline	1	0.0143100216171647	0.0366374599610386
1	236095414	236098308	4	gain	AABB	100	germline	1	0.0832822591130811	0.27006762629655
1	236425330	236434012	2	neutral	AA	36.5536	germline	1	0.0373132002454634	0.0983192948901555
1	237064904	237070692	2	neutral	AA	100	somatic	0	0.117629001602369	0.166870373092443
1	240847362	240934182	2	neutral	AA	52.2316	somatic	0	0.803432077204854	0.807040284912378
1	247787174	247827690	2	neutral	AA	100	somatic	0	0.945705801539167	0.986560833356707
2	3180506	3183400	4	gain	AAAA	2.10713	germline	1	0.0832801298250498	0.270063928372774
2	5021090	5023984	5	gain	AAABB	18.1807	germline	1	0.0832780005811179	0.27006023048596
2	5044242	5324960	2	neutral	AA	39.8133	somatic	0	0.00635667592574031	0.00828894804339864
2	6968752	6983222	2	neutral	AA	100	somatic	0	0.269142373518113	0.332630574927583
2	9367878	9396818	2	neutral	AA	100	somatic	0	0.213295109254099	0.201733939218743
2	9819342	9906162	2	neutral	AA	56.3641	somatic	0	0.337264525014003	0.277365313891081
2	16131156	16134050	0	loss	-	-1	germline	1	0.0832687743669931	0.270044206736867
2	18292974	18298762	1	loss	A	-1	somatic	0	0.020657001978766	0.0559508674836733
2	26306460	26425114	2	neutral	AA	100	somatic	0	0.0264969448125521	0.105297778180344
2	26425114	26451160	2	neutral	AA	21.8273	somatic	0	0.74703086764241	0.822841620591215
2	32913462	32916356	3	gain	AAB	100	somatic	0	0.0832893570583571	0.270079952976072
2	34473328	34505162	1	loss	A	-1	germline	1	1.09109861680148e-07	1.97083492858852e-08
2	38993756	39060318	2	neutral	AA	58.5911	somatic	0	0.441478517261482	0.385181762388046
2	39381552	39419174	2	neutral	AA	54.5707	somatic	0	0.710725475520662	0.897257818258948
2	52523206	52557934	1	loss	A	-1	germline	1	6.60031317575096e-08	3.83018383676159e-09
2	59115738	59133102	1	loss	A	-1	germline	1	0.00187264050965146	0.00162725043917311
2	69322876	69340240	2	neutral	AA	100	somatic	0	0.297389549852346	0.526887639928057
2	71655440	71698850	2	neutral	AA	54.7829	somatic	0	0.0779489977497127	0.386692005068983
2	89771880	89774774	4	gain	-	-1	germline	1	0.083281549345504	0.270066393651185
2	89774774	89783456	6	gain	-	-1	germline	1	0.00270094877969851	0.00495890776352326
2	89783456	89792138	4	gain	-	-1	germline	1	0.0143125976949983	0.0366438681956862
2	89792138	89823972	4	gain	AAAA	1.3443	germline	1	4.33192243837638e-08	4.14018019867513e-09
2	89823972	89826866	7	gain	AAAAAAA	10.6403	germline	1	0.0832744519392288	0.270054067423403
2	89826866	89841336	27	gain	AAAAAAAAAAAAAAAAAABBBBBBBBB	8.3392	germline	1	0.000107526122838628	9.08155329828464e-05
2	89841336	89850018	4	gain	AAAB	1.1619	germline	1	0.00270162226937038	0.00495993493508073
2	91409884	91415672	4	gain	-	-1	germline	1	0.0143117016215313	0.0366415071530456
2	106261892	106270574	1	loss	A	-1	germline	1	0.00559683433703699	0.0095482772530523
2	109199302	109202196	13	gain	AAAAAAAAAAAAB	100	germline	1	0.083270193730654	0.270046671883855
2	117042042	117044936	0	loss	-	-1	germline	1	0.0832652260435832	0.270038043941244
2	118205430	118219900	2	neutral	AA	36.9161	somatic	0	0.912622125229841	0.943481842249088
2	121012610	121111006	2	neutral	AA	100	somatic	0	0.194925110544532	0.129416366013059
2	122792420	122815572	2	neutral	AA	100	somatic	0	0.946728082734986	0.695969326688722
2	125686420	125695102	1	loss	A	-1	germline	1	0.00556562816266823	0.00951002121475464
2	128600678	128606466	2	neutral	AA	27.284	somatic	0	0.476056802411675	0.620439942938803
2	136203216	136226368	2	neutral	AA	100	somatic	0	0.746166326922899	0.891491129924077
2	139702062	139739684	2	neutral	AA	36.4983	somatic	0	0.0268209666477173	0.0118571777132332
2	144590028	144630544	2	neutral	AA	100	somatic	0	0.0962276015258395	0.366278431532141
2	146106484	146118060	1	loss	A	-1	germline	1	0.000959869521515503	0.00125709888021586
2	161276832	161279726	4	gain	AAAB	2.74977	germline	1	0.0832843884452127	0.270071324257286
2	163140568	163218706	2	neutral	AA	100	somatic	0	0.149547119956895	0.234724645342346
2	169463958	169469746	1	loss	A	-1	somatic	0	0.0210204520282975	0.0526097406376628
2	172138014	172143802	1	loss	A	-1	germline	1	0.0144521453232447	0.0370635345838605
2	177465868	177541112	2	neutral	AA	75.6953	somatic	0	0.243573019196558	0.62266571250435
2	178151746	178226990	2	neutral	AA	42.0738	somatic	0	0.0288040428219393	0.0145770029559066
2	183074440	183106274	2	neutral	AA	100	somatic	0	0.517458805808576	0.740482322566423
2	184258086	185994486	2	neutral	AA	100	somatic	0	0.0170421325336386	0.00287490076900476
2	197124810	197188478	2	neutral	AA	100	somatic	0	0.163541306646289	0.165117463675883
2	205245374	205528986	2	neutral	AA	29.074	somatic	0	0.508787744796591	0.425645236386121
2	224108466	224137406	2	neutral	AA	70.4257	somatic	0	0.0579022432350882	0.166744382495732
2	227219516	227251350	2	neutral	AA	54.5678	somatic	0	0.547780649478791	0.735058811886047
2	227375792	227393156	3	gain	-	-1	germline	1	2.21619108154879e-05	1.23258086527356e-05
2	227393156	227601524	2	neutral	AA	33.861	somatic	0	0.0431818133429871	0.169475857428916
2	234642626	234665778	2	neutral	AA	36.4046	somatic	0	0.734280721573738	0.802790088373885
2	241466678	241475360	2	neutral	AA	14.2749	somatic	0	0.226241072596405	0.493228518473199
3	3588560	3617500	2	neutral	AA	100	somatic	0	0.866733188378128	0.900584555073275
3	3686956	4002402	2	neutral	AA	20.7383	germline	1	0.047427361222037	0.19409049995142
3	25750812	25785540	2	neutral	AA	54.0702	somatic	0	0.967329285331655	0.988495314155798
3	30245194	30271240	2	neutral	AA	36.4072	germline	1	0.581887471565361	0.812998531451189
3	32059732	32068414	1	loss	A	-1	germline	1	0.0209610579368535	0.0572438126101594
3	32896098	32916356	2	neutral	AA	100	somatic	0	0.377532446434054	0.646167029325905
3	39613072	39621754	2	neutral	AA	54.5678	somatic	0	0.909638900602875	0.958116324962449
3	39931412	40018232	2	neutral	AA	100	germline	1	0.0965739703514714	0.296311503300762
3	48888342	48899918	2	neutral	AA	54.5678	somatic	0	0.461217984599982	0.836047846554145
3	57816332	57833696	2	neutral	AA	100	somatic	0	0.519495500629388	0.575891335374308
3	68385220	68486510	2	neutral	AA	37.0062	somatic	0	0.0104719196680201	0.0223470423816389
3	68584906	68590694	1	loss	A	-1	germline	1	0.022918758175882	0.0534074142116689
3	68689090	68700666	1	loss	A	-1	germline	1	0.0220495493543438	0.0567130420974598
3	72471548	72526534	2	neutral	AA	100	somatic	0	0.962407291616747	0.761955002957503
3	74804112	74824370	2	neutral	AA	100	germline	1	0.173148148628607	0.213248395723157
3	75669418	75672312	6	gain	AAAABB	4.91155	germline	1	0.0832772908429404	0.270058997865235
3	75712828	75866210	2	neutral	AA	5.64413	germline	1	0.177596464154503	0.540117423155015
3	85352742	85384576	2	neutral	AA	27.4753	somatic	0	0.18732956932719	0.468030314681212
3	85575580	85610308	2	neutral	AA	100	somatic	0	0.159843150240584	0.0617354756479189
3	90284118	90506956	2	neutral	AA	1.09311	somatic	0	0.00159310003068524	0.0144885749775604
3	91522750	94112880	2	neutral	AA	31.635	somatic	0	0.522503891609863	0.333895342018732
3	96457020	96474384	2	neutral	AA	100	somatic	0	0.622877413210799	0.379446267786919
3	101978772	101987454	1	loss	A	-1	somatic	0	0.00613007920417541	0.00985041953854804
3	102777516	102794880	2	neutral	AA	100	somatic	0	0.566963291604569	0.560061131288107
3	105903036	105911718	2	neutral	AA	100	somatic	0	0.510222114345552	0.62173488380182
3	111251148	111265618	2	neutral	AA	100	somatic	0	0.492273906414782	0.705587306123285
3	111447940	111528972	2	neutral	AA	100	germline	1	0.0148618950445327	0.0352946869551916
3	113774716	113858642	2	neutral	AA	36.3787	somatic	0	0.00126756242307484	0.00253221542668092
3	114272484	114321682	2	neutral	AA	100	somatic	0	0.20075903169633	0.272237480671203
3	122303334	122314910	2	neutral	AA	100	somatic	0	0.455206604380275	0.82051097498839
3	129205524	129219994	2	neutral	AA	100	somatic	0	0.00827810156580249	0.00597653579570456
3	131992446	131995340	0	loss	-	-1	germline	1	0.0832744519392288	0.27005406742341
3	135132436	135146906	2	neutral	AA	100	somatic	0	0.315767126581191	0.422843283954562
3	136301612	136307400	1	loss	A	-1	germline	1	0.0216699891582712	0.0500967146897772
3	145325104	145443758	2	neutral	AA	54.5693	somatic	0	0.117944364935015	0.436083218943232
3	147113596	147240932	2	neutral	AA	46.6831	germline	1	0.66361516897074	0.803848576858067
3	153981058	155002640	2	neutral	AA	20.3914	germline	1	0.22424998515528	0.224413736130762
3	156096572	156148664	2	neutral	AA	38.921	somatic	0	0.0671867245168728	0.0342894026596008
3	158269966	158342316	2	neutral	AA	18.3009	somatic	0	0.383644856629879	0.609133967689943
3	162584920	162645694	2	neutral	AA	62.2411	somatic	0	0.447320793771523	0.596287215386172
3	162793288	162909048	1	loss	A	-1	germline	1	4.23067338882289e-24	0
3	164431292	164468914	2	neutral	AA	36.3851	somatic	0	0.879482434194982	0.852608591218563
3	177749480	177766844	2	neutral	AA	54.5678	somatic	0	0.854980293189677	0.879880931161121
3	185453308	185456202	0	loss	-	-1	germline	1	0.0832709034198339	0.27004790446352
3	191458358	191478616	2	neutral	AA	36.8035	germline	1	0.155289061794768	0.315405928182325
3	193157136	193168712	0	loss	-	-1	germline	1	0.0145007399650972	0.0372181430115495
4	552754	555648	4	gain	AAAB	15.1667	somatic	0	0.0832872276233228	0.270076254929095
4	3351252	3362828	1	loss	A	-1	germline	1	0.0009407868388506	0.00118755241279123
4	7862998	7865892	4	gain	AABB	6.00732	germline	1	0.0832843884452127	0.270071324257286
4	9718052	9877222	2	neutral	AA	7.31768	germline	1	0.100428624470069	0.0797867465505687
4	10230290	10233184	0	loss	-	-1	germline	1	0.0832652260435832	0.270038043941244
4	14559714	14802810	2	neutral	AA	100	somatic	0	0.120883223208647	0.153743362519782
4	30459350	30499866	2	neutral	AA	54.5678	somatic	0	0.484407498651692	0.307588112669995
4	31813742	31819530	0	loss	-	-1	germline	1	0.014363643395475	0.0368047316880945
4	40293162	40296056	4	gain	AAAB	26.5169	germline	1	0.0832843884452127	0.270071324257286
4	42761744	42767532	1	loss	A	-1	germline	1	0.0191085174799627	0.0480977562144635
4	43450516	43453410	1	loss	A	-1	somatic	0	0.0832914865374936	0.270083651060018
4	46642598	47088274	2	neutral	AA	73.4086	germline	1	0.126198572000531	0.0498656778946441
4	49145908	49151696	72	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBBBBBBBBBBB	100	germline	1	0.0143061022834861	0.0366313899063804
4	49652358	49658146	23	gain	AAAAAAAAAAAAAAABBBBBBBB	100	germline	1	0.0143067741020008	0.0366330759444052
4	62556704	62611690	2	neutral	AA	48.1986	somatic	0	0.98454523638689	0.969731023967121
4	62802694	62811376	1	loss	A	-1	germline	1	0.00700542687309111	0.00945487073684581
4	63827170	63850322	1	loss	A	-1	germline	1	2.67949533708596e-05	7.52585909202796e-06
4	67551748	67566218	2	neutral	AA	100	germline	1	0.0824458350503309	0.0578278412422245
4	67823784	67829572	2	neutral	AA	38.1236	somatic	0	0.363922096250206	0.355931371922778
4	68518344	68622528	1	loss	A	-1	germline	1	1.2855884589077e-15	0
4	70619388	70625176	1	loss	A	-1	somatic	0	0.0227694722204211	0.0626963237988885
4	74558122	74563910	1	loss	A	-1	somatic	0	0.0211848189824594	0.0579297022477259
4	77946996	78004876	2	neutral	AA	100	somatic	0	0.228534447267574	0.575453240980441
4	78204562	78291382	2	neutral	AA	27.2879	somatic	0	0.0605335550771148	0.01845829095691
4	83176454	83208288	2	neutral	AA	54.5792	germline	1	0.531905424092463	0.930545163972961
4	85694234	85723174	2	neutral	AA	100	germline	1	0.107247168641465	0.0579703952409728
4	86837364	86883668	2	neutral	AA	100	somatic	0	0.0158844008355961	0.0344760725059164
4	89349356	89482480	2	neutral	AA	6.51585	somatic	0	0.0128765453796881	0.0307908221743687
4	91010512	91016300	0	loss	-	-1	germline	1	0.0164494412726722	0.0431536006600118
4	91644298	91742694	2	neutral	AA	36.3786	somatic	0	0.238860173438766	0.65268981977151
4	95661170	95704580	2	neutral	AA	100	somatic	0	0.878413905833019	0.988065388486881
4	105518134	105578908	2	neutral	AA	29.506	somatic	0	0.301084426202895	0.205861116657574
4	114252226	114260908	1	loss	A	-1	germline	1	0.00493257883899844	0.00989903871615772
4	114585036	114593718	1	loss	A	-1	germline	1	0.00595100396748497	0.00988054044741549
4	130403640	130473096	2	neutral	AA	100	somatic	0	0.564403825730986	0.689226423570801
4	134510226	134516014	1	loss	A	-1	germline	1	0.0211736053935376	0.0509489621929716
4	141308232	141314020	1	loss	A	-1	germline	1	0.0209279768325824	0.0568190539253673
4	153092600	154420946	2	neutral	AA	4.67232	germline	1	0.00337989802034511	0.0290249467682158
4	154467250	154849258	2	neutral	AA	100	germline	1	0.000571684931711004	0.00296457849378917
4	161528610	161531504	1	loss	A	-1	somatic	0	0.0833000048950738	0.270098443765382
4	165079548	165085336	1	loss	A	-1	germline	1	0.0213814181368761	0.0558812659067452
4	169200604	169252696	2	neutral	AA	100	somatic	0	0.690239070576617	0.662060393944286
4	172502658	172514234	1	loss	A	-1	germline	1	0.0206784925843977	0.0563210507574441
4	177069390	177080966	2	neutral	AA	100	somatic	0	0.232411805445682	0.565646486402623
4	183523010	183528798	2	neutral	AA	100	somatic	0	0.526955128765509	0.815171180313533
4	185519870	185522764	0	loss	-	-1	germline	1	0.083268064692512	0.270042974169529
4	186538558	186567498	2	neutral	AA	23.9718	somatic	0	0.582696836828826	0.962730143741822
5	413842	416736	5	gain	AAABB	6.46842	germline	1	0.0832794200721726	0.27006269573973
5	758228	764016	3	gain	AAB	4.54499	somatic	0	0.0143199921896764	0.0366610740958643
5	3322312	3325206	4	gain	AAAA	10.834	germline	1	0.0832865178214451	0.270075022254982
5	9911950	9917738	2	neutral	AA	100	somatic	0	0.0370968966076956	0.0755030835602432
5	12811738	12820420	1	loss	A	-1	germline	1	0.00414010745935251	0.00661769817546898
5	16533422	16562362	2	neutral	AA	36.3786	somatic	0	0.345103587952592	0.301010756166017
5	20243530	20414276	2	neutral	AA	35.1669	somatic	0	0.0930133453062269	0.14138097166382
5	26795546	26804228	1	loss	A	-1	germline	1	0.0212022023647538	0.0579367270918991
5	27553774	27652170	2	neutral	AA	100	somatic	0	0.218275323968529	0.182565373252122
5	30884768	30988952	2	neutral	AA	25.5443	somatic	0	0.169648123730861	0.196066172119244
5	39161608	39184760	2	neutral	AA	54.6927	somatic	0	0.559157441354417	0.421932291195578
5	41450762	41471020	2	neutral	AA	54.5678	somatic	0	0.0464514447422271	0.187683527646127
5	45004594	45016170	1	loss	A	-1	germline	1	0.00143409544603618	0.0016895533773994
5	45372132	45377920	1	loss	A	-1	somatic	0	0.0209972411282209	0.0573616207899146
5	46321364	50254310	2	neutral	AA	1.69089	somatic	0	0.064675091081274	0.211630785453694
5	52908108	52913896	1	loss	A	-1	somatic	0	0.0225431252521205	0.0600148613963188
5	60704544	60710332	1	loss	A	-1	somatic	0	0.0231086477687385	0.0575000746537975
5	86918396	86921290	0	loss	-	-1	germline	1	0.0832652260435832	0.270038043941244
5	91201516	91207304	1	loss	A	-1	germline	1	0.0212105033584424	0.058026609220576
5	91893182	91925016	2	neutral	AA	54.5791	somatic	0	0.654857427136317	0.698413779309854
5	92341752	92347540	1	loss	A	-1	germline	1	0.0203703820995668	0.0552389268350425
5	95904266	95930312	2	neutral	AA	100	somatic	0	0.0844873442474092	0.0224295766724303
5	97177626	97365736	2	neutral	AA	100	somatic	0	0.184842270920383	0.415366159573743
5	106988286	106991180	1	loss	A	-1	germline	1	0.083412229099428	0.27029326954225
5	113991766	114000448	1	loss	A	-1	germline	1	0.00568780960884857	0.00931935636593539
5	125614070	125616964	0	loss	-	-1	somatic	0	0.0832744519392288	0.27005406742341
5	127911906	127929270	2	neutral	AA	100	somatic	0	0.264427902882646	0.526787961418844
5	137517092	137522880	1	loss	A	-1	germline	1	0.0276233684613508	0.0646725592831265
5	141175108	141178002	6	gain	AAAAAA	54.5679	germline	1	0.0832772908429404	0.270058997865235
5	146173046	146207774	2	neutral	AA	41.1027	somatic	0	0.00692198854983657	0.020456102872604
5	149289884	149295672	2	neutral	AA	100	somatic	0	0.463297651384968	0.612856232324348
5	151188348	151194136	2	neutral	AA	100	somatic	0	0.294126615911375	0.641379002493273
5	151466172	151495112	2	neutral	AA	100	germline	1	0.798175539823212	0.659758367013929
5	152696122	152699016	1	loss	A	-1	somatic	0	0.0834804757434183	0.27041169477276
5	162304202	162309990	1	loss	A	-1	somatic	0	0.0271958678353471	0.0743458291758812
5	178582952	178585846	3	gain	AAB	19.2113	germline	1	0.0832943259116135	0.27008858189609
5	178681348	178692924	1	loss	A	-1	somatic	0	0.00514713074094886	0.0210999456550089
5	180950244	181002336	1	loss	A	-1	germline	1	5.29403381403904e-12	2.1094237467878e-14
5	181045746	181048640	4	gain	AAAB	64.606	germline	1	0.0832872276233228	0.270076254929095
6	257566	295188	3	gain	-	-1	germline	1	1.99024267752802e-09	7.68827224106872e-11
6	295188	382008	4	gain	-	-1	germline	1	4.97694591673465e-20	0
6	32488044	32667472	0	loss	-	-1	somatic	0	5.43644460762817e-17	0
6	33969772	33975560	1	loss	A	-1	germline	1	0.0209296962404892	0.0520804796270097
6	35787204	35798780	4	gain	-	-1	germline	1	0.000532457005540623	0.000671345356749287
6	51200648	51203542	1	loss	A	-1	somatic	0	0.0832872276233228	0.270076254929102
6	60229928	60241504	3	gain	-	-1	germline	1	0.000533013499663435	0.000672025454047209
6	72153208	72158996	1	loss	A	-1	somatic	0	0.0208105678042227	0.0558097950634341
6	76728622	76743092	1	loss	A	-1	germline	1	0.00569487655771755	0.00888733813561515
6	78812302	78818090	1	loss	A	-1	somatic	0	0.0171650470558337	0.0418780083357214
6	80574748	80583430	1	loss	A	-1	germline	1	0.00374278711934784	0.00644470345083314
6	93872678	93878466	1	loss	A	-1	germline	1	0.0255432180390169	0.0533293299758557
6	96170514	96367306	2	neutral	AA	100	somatic	0	0.538145399611016	0.296018610930578
6	103289754	103315800	1	loss	A	-1	germline	1	3.634549427565e-06	1.31174702433512e-06
6	104719390	104811998	2	neutral	AA	21.8277	germline	1	0.24787469761252	0.389491058908774
6	104811998	104817786	1	loss	A	-1	germline	1	0.0206562292983686	0.056281882148103
6	153995528	154007104	2	neutral	AA	100	somatic	0	0.263057640791375	0.47173636540765
6	157312052	157314946	8	gain	AAAAABBB	2.26276	germline	1	0.0832744519392288	0.270054067423403
6	159780634	159792210	2	neutral	AA	100	somatic	0	0.184737046425538	0.26760953331559
6	162388128	162440220	2	neutral	AA	26.8959	somatic	0	0.319281917670734	0.573842256595474
6	165311068	165319750	1	loss	A	-1	germline	1	0.00724828719925483	0.00953298298007621
6	169516050	169663644	2	neutral	AA	37.6642	germline	1	0.158329431004895	0.252919001818082
6	170144048	170146942	4	gain	AAAB	43.1383	somatic	0	0.0832886472417788	0.27007872028964
7	9761462	9767250	1	loss	A	-1	germline	1	0.0193811953231346	0.0522634281000673
7	48541062	48552638	1	loss	A	-1	germline	1	0.000767578411409934	0.00125561113596939
7	57486416	57495098	3	gain	-	-1	germline	1	0.00270746561106904	0.0049766023091814
7	57906046	57914728	1	loss	A	-1	germline	1	0.00504944195030194	0.00899649203538078
7	61922918	62357018	3	gain	AAB	0.502557	germline	1	7.14780184204788e-18	0
7	62357018	62403322	3	gain	AAB	-1	somatic	0	NA	NA
7	62403322	62406216	5	gain	-	-1	germline	1	0.0832780005811179	0.27006023048596
7	62406216	62438050	3	gain	AAB	-1	somatic	0	NA	NA
7	62438050	62681146	3	gain	AAB	0.473772	somatic	0	4.08910581255371e-34	0
7	62681146	62692722	3	gain	AAB	10.7261	germline	1	0.000534294306250346	0.000676318718772273
7	65222078	65230760	1	loss	A	-1	somatic	0	0.00576557657378608	0.00971356386203537
7	67734070	67867194	2	neutral	AA	18.7467	somatic	0	0.000812920607746778	0.000218124142513987
7	68417054	68463358	2	neutral	AA	17.3631	somatic	0	0.0396296111860509	0.0592021699434339
7	69117402	69357604	2	neutral	AA	36.3787	somatic	0	0.00986578297641432	0.0202081124655532
7	72497594	72506276	2	neutral	AA	15.5915	somatic	0	0.217446390945838	0.498451907456331
7	74352648	74372906	2	neutral	AA	36.3875	somatic	0	0.0131689772853418	0.0098076439661785
7	75556552	75559446	2	neutral	AA	100	somatic	0	0.72424389524427	0.861836367329673
7	78161152	78164046	2	neutral	AA	100	germline	1	0.4560997428888	0.685910574520892
7	79758640	79761534	2	neutral	AA	54.5678	somatic	0	0.0948338782298093	0.28959077015605
7	80450306	80493716	1	loss	A	-1	germline	1	2.01410143318562e-10	3.90565357832884e-12
7	89219126	89277006	2	neutral	AA	13.2445	somatic	0	0.844126847078143	0.834577703166097
7	91684814	91713754	2	neutral	AA	54.6128	somatic	0	0.822348016761129	0.822841620591214
7	91887394	91898970	2	neutral	AA	54.5681	somatic	0	0.736605033959125	0.861003021471847
7	95837704	95855068	2	neutral	AA	36.3297	somatic	0	0.0108564442378142	0.071085786773995
7	97794048	97805624	2	neutral	AA	100	somatic	0	0.358453970595827	0.69014714048242
7	99119500	99122394	2	neutral	AA	100	somatic	0	0.762235637403358	0.880615162411786
7	100948508	100957190	3	gain	AAB	0.749787	germline	1	0.00270305139184405	0.00496363436777014
7	100957190	100960084	11	gain	AAAAAAABBBB	3.60834	germline	1	0.083270193730654	0.270046671883855
7	100960084	100977448	3	gain	AAB	0.524288	germline	1	2.21623930042941e-05	1.23380670531414e-05
7	101489686	101492580	2	neutral	AA	100	somatic	0	0.171575017935073	0.400142890293228
7	103767264	103775946	2	neutral	AA	54.5922	somatic	0	0.34479402501888	0.610917581660114
7	103972738	103984314	2	neutral	AA	100	somatic	0	0.391267313133848	0.531308559559422
7	106027478	106056418	2	neutral	AA	54.6166	somatic	0	0.240644794075068	0.303375009424614
7	107161926	107228488	2	neutral	AA	27.284	somatic	0	0.978701993287022	0.876654779053289
7	107378976	107393446	2	neutral	AA	54.5678	somatic	0	0.179048513511706	0.362185221780591
7	109801254	109815724	1	loss	A	-1	germline	1	0.000444645794250062	0.000270526591194975
7	112967290	112984654	2	neutral	AA	100	somatic	0	0.807427042167786	0.444926482507361
7	114119102	114130678	2	neutral	AA	100	somatic	0	0.401293501944045	0.581193423244292
7	116335906	116341694	2	neutral	AA	100	somatic	0	0.525642411180425	0.85432707553982
7	117007314	117010208	2	neutral	AA	100	somatic	0	0.675075440344811	0.835318839298353
7	119024432	119143086	2	neutral	AA	100	germline	1	0.177183177542345	0.436987825043906
7	119189390	119195178	1	loss	A	-1	germline	1	0.018836704080951	0.0505580897154699
7	119710310	119718992	2	neutral	AA	54.5679	somatic	0	0.0946247208963324	0.118031088601317
7	122471186	122476974	2	neutral	AA	100	somatic	0	0.379197385637761	0.427476275843617
7	129454408	129457302	2	neutral	AA	100	somatic	0	0.689346175558963	0.84327111940519
7	131827488	131896944	2	neutral	AA	55.2062	somatic	0	0.198485386938536	0.509877958894775
7	134099278	134113748	1	loss	A	-1	germline	1	0.000285980469512343	0.000261681473183173
7	135013782	135016676	2	neutral	AA	100	somatic	0	0.595543331968146	0.787004295213439
7	137334770	137392650	2	neutral	AA	100	germline	1	0.0470857871305207	0.0743999872428985
7	143846270	143849164	4	gain	AABB	16.9709	germline	1	0.0832808395828269	0.270065161009926
7	144413494	144491632	2	neutral	AA	36.5689	germline	1	0.00611223116297277	0.0137247365397998
7	148375380	148378274	0	loss	-	-1	germline	1	0.0832652260435832	0.270038043941244
7	152400934	152406722	9	gain	AAAAAAABB	2.58219	germline	1	0.0143083417867645	0.0366357737464741
7	152406722	152409616	5	gain	AAAAB	3.57952	germline	1	0.0832794200721726	0.27006269573973
7	152415404	152487754	2	neutral	AA	34.635	somatic	0	1.83566875937542e-05	1.40380022835007e-05
7	154319656	154322550	2	neutral	AA	100	somatic	0	0.163740325451265	0.389966377604441
7	154600374	154609056	1	loss	A	-1	germline	1	0.00443147168233077	0.00817153042393282
7	155326768	155352814	2	neutral	AA	2.93941	somatic	0	0.000195613008694375	0.00295416358339984
7	156426488	156432276	2	neutral	AA	54.5683	somatic	0	0.622812967473614	0.911148307000223
8	616422	2827438	2	neutral	AA	25.7284	somatic	0	0.898000876433533	0.963832663492135
8	5680922	5683816	2	neutral	AA	100	somatic	0	0.344097346712557	0.58846751773647
8	6181584	6184478	2	neutral	AA	100	somatic	0	0.649759376584583	0.82067758117393
8	15193500	15216652	2	neutral	AA	54.5678	somatic	0	0.990969224003434	0.994600044208169
8	16255598	16267174	2	neutral	AA	100	somatic	0	0.699321109759585	0.985013493780737
8	17757584	17772054	2	neutral	AA	100	somatic	0	0.147490615987673	0.0817779801924697
8	17853086	17887814	2	neutral	AA	36.7139	somatic	0	0.195161402426627	0.609018809202421
8	19849946	19852840	2	neutral	AA	100	somatic	0	0.418036248632776	0.65451949814275
8	24821838	24940492	2	neutral	AA	38.9571	somatic	0	0.0250578380612483	0.0686062540907284
8	25496140	25499034	2	neutral	AA	100	somatic	0	0.362267454312862	0.605350946097903
8	29819776	29909490	2	neutral	AA	13.6714	somatic	0	0.0632344328424624	0.37390532138886
8	31174168	31191532	2	neutral	AA	100	somatic	0	0.597039658212903	0.966065753393422
8	31365172	31405688	2	neutral	AA	54.8834	somatic	0	0.600318825794644	0.771421607954535
8	32311510	32314404	2	neutral	AA	100	somatic	0	0.183495825900139	0.415270305164868
8	32783232	32803490	2	neutral	AA	100	somatic	0	0.64747872023204	0.786138740064161
8	33642750	33651432	2	neutral	AA	54.5678	somatic	0	0.198147834731373	0.355248780335743
8	35075280	35081068	2	neutral	AA	100	somatic	0	0.39112515405805	0.716438950166327
8	37086610	37121338	2	neutral	AA	100	somatic	0	0.737518408661419	0.75317334808495
8	37957704	37963492	2	neutral	AA	54.5678	somatic	0	0.197602274882581	0.269654913107076
8	39375764	39529146	1	loss	A	-1	germline	1	3.71082410301387e-30	0
8	43236360	43239254	6	gain	AAAABB	3.17193	germline	1	0.0832772908429404	0.270058997865235
8	43239254	43242148	10	gain	AAAAAAABBB	2.67275	germline	1	0.0832716131139135	0.270049137047277
8	46049328	46069586	2	neutral	AA	36.3786	somatic	0	0.0220761080046142	0.013087226380984
8	46492110	46497898	1	loss	A	-1	somatic	0	0.0293140949204995	0.0566770860629708
8	50239840	50317978	2	neutral	AA	100	somatic	0	0.284964543095715	0.65138543706545
8	50419268	50422162	2	neutral	AA	100	somatic	0	0.514947346274013	0.731170863427856
8	51359818	51362712	2	neutral	AA	100	somatic	0	0.153633541531952	0.376535601363667
8	54540324	54551900	2	neutral	AA	72.2795	somatic	0	0.632659354393388	0.775645879267927
8	59515110	59555626	2	neutral	AA	100	germline	1	0.00313066955581373	0.0183290924006986
8	63213642	63271522	2	neutral	AA	54.5679	somatic	0	0.00786258573002389	0.00435333075392208
8	67244984	67250772	1	loss	A	-1	germline	1	0.0236949806307173	0.056077606819077
8	67537278	67560430	2	neutral	AA	56.9087	somatic	0	0.486060288055132	0.843294386653106
8	67647250	67679084	2	neutral	AA	93.3681	somatic	0	0.644903302873517	0.763880645116607
8	69432848	69444424	2	neutral	AA	36.7139	somatic	0	0.616531978820816	0.356859444954565
8	78684966	78719694	2	neutral	AA	100	somatic	0	0.565598200800845	0.711272555450735
8	86116758	86125440	2	neutral	AA	100	somatic	0	0.273197724946638	0.587082507143773
8	86501660	86504554	2	neutral	AA	100	somatic	0	0.318199621403609	0.563559765268704
8	86970488	86993640	2	neutral	AA	100	somatic	0	0.440471372148318	0.455739798239081
8	88194650	88368290	2	neutral	AA	100	germline	1	0.797410829003444	0.734903350721366
8	89641650	89708212	2	neutral	AA	100	somatic	0	0.0489176594019465	0.132092230985273
8	93195482	93198376	2	neutral	AA	100	somatic	0	0.70418396564259	0.851376056284504
8	97828776	97831670	2	neutral	AA	100	somatic	0	0.570074017506878	0.770107708093151
8	102433130	102436024	2	neutral	AA	100	somatic	0	0.636818744455289	0.812918311997153
8	106944876	106950664	2	neutral	AA	100	somatic	0	0.192250059838614	0.429048458394275
8	107868062	107882532	2	neutral	AA	100	somatic	0	0.365746120042128	0.431611850000533
8	109749162	109888074	2	neutral	AA	68.2776	somatic	0	0.00721067314531478	0.0591059150669372
8	111280088	111285876	1	loss	A	-1	germline	1	0.0184759749754052	0.0491043148600699
8	111369802	111453728	2	neutral	AA	98.9547	somatic	0	0.0455850608496822	0.164823771732335
8	113331934	113334828	2	neutral	AA	36.3786	somatic	0	0.541574388618916	0.750458581405125
8	115337476	115537162	2	neutral	AA	16.7016	somatic	0	0.306215807232131	0.0292131561257223
8	120462750	120572722	2	neutral	AA	36.4455	somatic	0	0.222635580060557	0.480862604946401
8	120920002	120922896	1	loss	A	-1	germline	1	0.125033774402897	0.336386976343188
8	123377008	123379902	2	neutral	AA	100	somatic	0	0.535976758820514	0.74642616956945
8	127778782	127804828	2	neutral	AA	18.1913	somatic	0	0.319106484867101	0.420498330508205
8	130041890	130146074	2	neutral	AA	28.3848	somatic	0	0.144664042093076	0.0907520111061816
8	136362386	136368174	2	neutral	AA	100	somatic	0	0.612005176970977	0.487869648569287
8	137201646	137219010	2	neutral	AA	18.3694	somatic	0	0.84778922504283	0.550047254595945
8	138489476	138625494	2	neutral	AA	100	somatic	0	0.000436764110892098	0.00594528181980025
8	139163778	139189824	2	neutral	AA	100	somatic	0	0.00623266828103651	0.022874157373274
8	140295332	140350318	2	neutral	AA	12.1394	somatic	0	0.0291772400466969	0.084363528335745
8	144124094	144126988	5	gain	AAAAB	34.5269	germline	1	0.0832772908429404	0.270058997865235
8	144126988	144158822	2	neutral	AA	100	somatic	0	0.00578493334055433	0.0173049289128165
9	2624858	2627752	2	neutral	AA	100	somatic	0	0.491075850497658	0.713275740766726
9	6699610	6711186	1	loss	A	-1	germline	1	0.000839177775030114	0.00160446004347436
9	10392354	10398142	2	neutral	AA	100	somatic	0	0.488064950168488	0.850246275328644
9	10730952	10756998	2	neutral	AA	100	somatic	0	0.473428508936407	0.682958769101934
9	11923280	11929068	2	neutral	AA	54.5679	somatic	0	0.066215098842421	0.139929625146249
9	13622058	13778334	2	neutral	AA	54.5678	germline	1	0.0198239907395901	0.0298507819894651
9	14562608	14577078	2	neutral	AA	100	somatic	0	0.603198188852695	0.5910176066447
9	17317696	17473972	2	neutral	AA	100	somatic	0	0.00514484538754935	0.0669688695432322
9	19627108	19734186	2	neutral	AA	64.4566	somatic	0	0.0614615177455762	0.0620136960110249
9	21725258	21965460	2	neutral	AA	27.661	somatic	0	0.000534604447987422	0.00141881939288957
9	23033346	23036240	2	neutral	AA	100	somatic	0	0.647540444750772	0.819360984468415
9	23363262	23377732	1	loss	A	-1	germline	1	0.000302791228690508	0.000258527674868336
9	23389308	23415354	2	neutral	AA	100	somatic	0	0.460686888748781	0.749655692214803
9	25988120	25991014	2	neutral	AA	100	somatic	0	0.386287727282436	0.627032180088811
9	28627448	28682434	2	neutral	AA	54.5679	somatic	0	0.252354742991764	0.407448786434646
9	29730062	29857398	2	neutral	AA	100	somatic	0	0.0184211997816793	0.199740108839305
9	29935536	29964476	2	neutral	AA	54.5678	somatic	0	0.845266915409588	0.842216315604681
9	31098924	31104712	2	neutral	AA	100	somatic	0	0.121833356836219	0.167035958684452
9	32890310	32898992	2	neutral	AA	54.6166	somatic	0	0.139830468587713	0.446619797382999
9	34884276	34904534	2	neutral	AA	100	somatic	0	0.879218873558339	0.98770629129302
9	40869068	40871962	4	gain	AABB	12.272	germline	1	0.083281549345504	0.270066393651185
9	40926948	40929842	6	gain	AAAABB	7.99998	germline	1	0.0832772908429404	0.270058997865235
9	77680748	77776250	2	neutral	AA	68.8313	somatic	0	0.0422271825443443	0.064341133259578
9	82015960	82111462	2	neutral	AA	100	somatic	0	0.62398034628024	0.313350408559045
9	90454864	90469334	2	neutral	AA	38.2156	somatic	0	0.589806568569399	0.672831335914776
9	93262044	93282302	2	neutral	AA	100	somatic	0	0.578927253686599	0.888634941466391
9	98546488	98549382	0	loss	-	-1	germline	1	0.0832652260435832	0.270038043941244
9	98699870	98740386	2	neutral	AA	100	somatic	0	0.726652955214076	0.989581388163064
9	106733614	106782812	2	neutral	AA	56.2258	somatic	0	0.900125619254767	0.868689713306676
9	112463734	112469522	2	neutral	AA	100	somatic	0	0.0674476260349712	0.119644990983703
9	112923880	112932562	2	neutral	AA	100	somatic	0	0.995020219957425	0.885379503526542
9	120144410	120150198	2	neutral	AA	100	somatic	0	0.978480684631051	0.998425034489776
9	120893956	120908426	2	neutral	AA	100	somatic	0	0.997852293937801	0.99989575022319
9	125382550	125397020	2	neutral	AA	36.3786	somatic	0	0.165115037465678	0.485373500784636
9	127515428	127547262	2	neutral	AA	100	somatic	0	0.587740972403896	0.614317086088533
9	129425468	129442832	2	neutral	AA	100	germline	1	0.866480897476584	0.994062429103521
9	129784324	130785648	1	loss	A	-1	somatic	0	2.85273870937748e-196	0
9	130944818	130973758	2	neutral	AA	6.30862	germline	1	0.455337128061993	0.831593848668688
9	133560994	133589934	2	neutral	AA	38.5455	somatic	0	0.260125948799831	0.482025191116994
9	134466816	134501544	2	neutral	AA	15.3668	somatic	0	0.513385587377659	0.848020955532014
9	134712806	134753322	2	neutral	AA	5.61428	somatic	0	0.0568009004256962	0.352396642023724
9	135219256	135227938	2	neutral	AA	15.8914	germline	1	0.671028734074918	0.977224046811577
9	135647568	135679402	2	neutral	AA	54.5678	somatic	0	0.805137266908705	0.851716544279977
9	136481040	136483934	2	neutral	AA	100	somatic	0	0.69800013038776	0.847988295433946
9	136564966	136602588	2	neutral	AA	17.2045	somatic	0	0.589865045183201	0.565371983971753
9	136886200	137010642	2	neutral	AA	100	somatic	0	0.736987398649161	0.40991738814059
9	137326088	137328982	5	gain	AAABB	3.969	germline	1	0.0832772908429404	0.270058997865235
10	4665128	4668022	1	loss	A	-1	germline	1	0.0835943206411388	0.270609154280398
10	38484412	38501776	3	gain	-	-1	germline	1	2.40210495418739e-05	1.43518704632806e-05
10	38524928	38527822	7	gain	-	-1	germline	1	0.0832744519392288	0.270054067423403
10	38574126	38577020	1	loss	A	-1	germline	1	0.123759123571458	0.33451364330258
10	38577020	38582808	3	gain	-	-1	germline	1	0.0228829197921005	0.063374896787866
10	38582808	38594384	1	loss	A	-1	germline	1	0.00166198462212212	0.00159481161227426
10	41838558	41841452	3	gain	AAA	62.9996	somatic	0	0.0833866482612506	0.270248869839778
10	41855922	41864604	14	gain	AAAAAAAAABBBBB	2.75752	germline	1	0.00270015303515388	0.00495808616667648
10	41881968	41899332	38	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	100	germline	1	0.00269990823378034	0.00495767541504688
10	42298704	42321856	3	gain	AAB	1.75848	germline	1	1.37413614502595e-06	1.26341998851753e-06
10	42770426	42871716	2	neutral	AA	36.5397	somatic	0	0.0775283433624215	0.0570203855182354
10	46515262	46561566	4	gain	AABB	0.743751	germline	1	9.15251139607858e-11	1.38622446854697e-12
10	48439772	48445560	2	neutral	AA	100	somatic	0	0.0737188718740417	0.113480224140506
10	51516094	51550822	2	neutral	AA	54.5787	somatic	0	0.993138188392355	0.969137091705303
10	52242488	52248276	2	neutral	AA	100	germline	1	0.101294094428682	0.224294698933776
10	52884956	52916790	2	neutral	AA	55.0741	germline	1	0.025476576714689	0.0323322197118893
10	53023868	53029656	1	loss	A	-1	germline	1	0.0217666873174165	0.0560961509218317
10	65546206	65557782	1	loss	A	-1	germline	1	0.0212325740410629	0.0581050398523062
10	65841394	65850076	2	neutral	AA	54.5678	somatic	0	0.124827895732416	0.257036760818917
10	67725388	67728282	1	loss	A	-1	germline	1	0.0832822591130811	0.270067626296557
10	68625422	68634104	2	neutral	AA	41.2053	germline	1	0.110515304012963	0.248077441142182
10	71661228	71667016	2	neutral	AA	100	somatic	0	0.582223263119826	0.953380146519606
10	72529428	72671234	2	neutral	AA	57.6475	somatic	0	4.7313103609287e-08	5.49953029782557e-07
10	81798910	81807592	2	neutral	AA	100	germline	1	0.914302235289235	0.890942639258196
10	86108076	86122546	2	neutral	AA	12.7199	germline	1	0.21817272862698	0.447333416559049
10	90926586	90938162	2	neutral	AA	54.568	somatic	0	0.0520714513577883	0.0623472289741376
10	92752700	92842414	2	neutral	AA	100	somatic	0	0.0677465445955768	0.190312620187246
10	99469674	99507296	2	neutral	AA	36.5345	somatic	0	0.108627927707368	0.35892164997326
10	100314722	100323404	2	neutral	AA	22.8196	germline	1	0.588000256946818	0.895934396222772
10	106270574	106273468	0	loss	-	-1	germline	1	0.0832744519392288	0.27005406742341
10	112900728	113036746	2	neutral	AA	27.4055	somatic	0	0.0649224723677926	0.108466501185905
10	114582142	114602400	2	neutral	AA	54.5678	somatic	0	0.865240500808173	0.931240896149398
10	126841126	126893218	2	neutral	AA	42.8315	somatic	0	0.0412188098208658	0.0795238648986285
10	127735372	127741160	2	neutral	AA	29.1096	somatic	0	0.149853868544706	0.289987343745971
10	128461766	128464660	4	gain	AABB	22.0856	germline	1	0.0832801298250498	0.270063928372774
10	131622014	131627802	1	loss	A	-1	germline	1	0.0223675488550202	0.0616964753781192
10	131920096	131940354	2	neutral	AA	54.5678	somatic	0	0.180411361561782	0.312240416914219
10	132154510	132200814	2	neutral	AA	11.0677	somatic	0	0.683224519781155	0.970333447141741
10	132362878	132365772	5	gain	AAABB	10.2355	germline	1	0.0832794200721726	0.27006269573973
10	133109530	133112424	5	gain	AAABB	3.16565	germline	1	0.0832794200721726	0.27006269573973
11	3713002	3782458	2	neutral	AA	100	somatic	0	0.000129150055138215	0.00176103339834399
11	13069304	13132972	2	neutral	AA	23.8123	germline	1	0.217347256751759	0.250622507270273
11	18075924	18078818	1	loss	A	-1	somatic	0	0.0870641159754665	0.276575620359804
11	18376900	18382688	1	loss	A	-1	somatic	0	0.0228721102286759	0.0563342754514213
11	18923866	18941230	3	gain	AAB	2.87689	germline	1	2.21450404966488e-05	1.23128818927398e-05
11	28983410	28992092	1	loss	A	-1	somatic	0	0.020814067703135	0.0567805741526166
11	40440756	40484166	2	neutral	AA	56.4051	somatic	0	0.480735018704674	0.753120415317481
11	54757374	54777632	1	loss	A	-1	germline	1	6.81425940530787e-05	3.86213463527962e-05
11	55599528	55683454	1	loss	A	-1	germline	1	5.45758376544838e-18	0
11	70231592	70240274	2	neutral	AA	100	somatic	0	0.243377241240851	0.532889474328283
11	82146190	82151978	1	loss	A	-1	germline	1	0.017633123054711	0.0444416900562596
11	86177532	86189108	1	loss	A	-1	germline	1	0.00111175425850628	0.00148910870928143
11	96561204	96566992	0	loss	-	-1	germline	1	0.0143074459483455	0.0366340875998131
11	104395262	104403944	1	loss	A	-1	germline	1	0.0266362021874608	0.0558438189871692
11	125784816	125909258	2	neutral	AA	100	somatic	0	0.346725083755751	0.182766106942305
11	131341296	131344190	3	gain	AAA	60.2353	germline	1	0.0832907767062145	0.270082418361258
12	2254426	2257320	5	gain	-	-1	germline	1	0.0832787103241953	0.270061463110791
12	11384996	11390784	1	loss	A	-1	germline	1	0.0237157095776288	0.0557587926085354
12	18096182	18099076	1	loss	A	-1	germline	1	0.083374570630016	0.270227905163902
12	37694350	37755124	2	neutral	AA	4.42791	germline	1	5.09525879924841e-05	0.000258149738785129
12	39711468	39714362	1	loss	A	-1	germline	1	0.0832950357673943	0.270089814615385
12	42625726	42634408	1	loss	A	-1	germline	1	0.00569608194096913	0.00965520722374658
12	45508150	45516832	1	loss	A	-1	germline	1	0.00735108099549264	0.00935899359708248
12	48312436	48318224	1	loss	A	-1	germline	1	0.0213205009352026	0.0563793574197744
12	49594478	49721814	2	neutral	AA	47.1423	somatic	0	0.459692130701016	0.549557157751125
12	49857832	49892560	2	neutral	AA	11.5034	somatic	0	0.75878466541018	0.953405568311355
12	59541156	59552732	1	loss	A	-1	germline	1	0.00156449899383283	0.00160605012490456
12	71366040	71386298	2	neutral	AA	100	somatic	0	0.593868367112227	0.954016519381638
12	71962204	71965098	1	loss	A	-1	germline	1	0.0836171047009939	0.270648658801283
12	82638170	82641064	1	loss	A	-1	somatic	0	0.0837375164393454	0.270857361828008
12	86032832	86038620	1	loss	A	-1	germline	1	0.0230762951451673	0.0523194777890233
12	88252530	88261212	2	neutral	AA	100	somatic	0	0.535327091206171	0.840070782661021
12	90090220	90098902	1	loss	A	-1	germline	1	0.00503412782816252	0.00919173478085999
12	96682752	96928742	2	neutral	AA	36.6651	somatic	0	0.071469392398785	0.070837673923248
12	105723608	105729396	2	neutral	AA	54.5678	somatic	0	0.975505511314233	0.980360518778563
12	120404870	120413552	2	neutral	AA	100	germline	1	0.783969486791527	0.983450964137425
12	120480114	120561146	2	neutral	AA	26.0567	somatic	0	0.00189820005328195	0.0178478698631943
12	121079172	121116794	2	neutral	AA	61.6625	somatic	0	0.822545817051314	0.963920640668978
12	124152600	124262572	2	neutral	AA	11.3095	somatic	0	0.11236776327747	0.327045337000279
12	126693532	126710896	2	neutral	AA	100	somatic	0	0.222804252150812	0.450023113190007
12	127058176	127171042	2	neutral	AA	5.34719	somatic	0	0.504809022869332	0.897468960528614
12	130643842	130646736	6	gain	AAAABB	4.84703	germline	1	0.0832772908429404	0.270058997865235
13	18232200	18235094	1	loss	A	-1	germline	1	0.109102410608568	0.312365865510571
13	20249318	20255106	1	loss	A	-1	somatic	0	0.0275982254951795	0.0571475336760304
13	21375084	21377978	4	gain	AAAA	5.8469	germline	1	0.0832879374301007	0.270077487607314
13	22020446	22023340	0	loss	-	-1	germline	1	0.083268064692512	0.270042974169529
13	23056498	23065180	1	loss	A	16.4919	germline	1	0.005723102548694	0.0100286268353017
13	26300672	26332506	2	neutral	AA	56.578	somatic	0	0.744023803958964	0.997400676292069
13	27099416	27229646	2	neutral	AA	100	somatic	0	0.172964673148386	0.216384007372123
13	33130512	33142088	2	neutral	AA	100	somatic	0	0.746015180824894	0.991354297650593
13	38481518	38487306	1	loss	A	-1	germline	1	0.0170430664296023	0.0449369395712473
13	42278446	42298704	2	neutral	AA	36.3787	somatic	0	0.74832062306998	0.894782885284842
13	44037998	44049574	2	neutral	AA	100	somatic	0	0.806127699640709	0.602496001305987
13	48957798	48963586	1	loss	A	-1	germline	1	0.0293099096400967	0.0564131892464603
13	50494512	50500300	1	loss	A	-1	germline	1	0.0197831142840087	0.0511735519155808
13	54161210	54227772	2	neutral	AA	100	somatic	0	0.0272142324516824	0.0848547538249113
13	57179652	57214380	1	loss	A	-1	germline	1	2.31370770669855e-08	7.07200520366769e-10
13	57318564	57341716	2	neutral	AA	100	somatic	0	0.947133933144409	0.914459164839243
13	63028426	63060260	3	gain	AAB	0.475335	somatic	0	4.09257506004887e-06	2.0286042318185e-06
13	63060260	63068942	4	gain	AAAB	2.20955	germline	1	0.00270139775576454	0.00495979796760548
13	63503042	63537770	2	neutral	AA	54.5777	somatic	0	0.603665947942578	0.784373975272766
13	64064478	64113676	2	neutral	AA	100	somatic	0	0.486251505730887	0.545735998753383
13	64738780	64767720	2	neutral	AA	54.5678	somatic	0	0.0373271955792454	0.0100947007214329
13	64767720	64770614	0	loss	-	-1	germline	1	0.0832744519392288	0.27005406742341
13	67424412	67430200	2	neutral	AA	36.3786	somatic	0	0.50845403683585	0.784719836332216
13	73394734	73420780	2	neutral	AA	100	somatic	0	0.261219380511965	0.336255789242736
13	82591866	82597654	1	loss	A	-1	germline	1	0.0243638381747144	0.0561249535306688
13	88868952	88889210	2	neutral	AA	36.386	somatic	0	0.749167969121986	0.539877174765772
13	89479586	89485374	2	neutral	AA	36.3805	somatic	0	0.386780503473941	0.760901454255368
13	95206812	95209706	2	neutral	AA	100	germline	1	0.822750399346043	0.907349126708168
13	98601474	98607262	1	loss	A	-1	germline	1	0.0207357928219893	0.0549707283796519
13	109216666	109219560	1	loss	A	-1	somatic	0	0.0843402485992504	0.271900159907928
13	109783890	109786784	1	loss	A	-1	somatic	0	0.0857137756682334	0.274264930414392
13	110675242	110764956	2	neutral	AA	24.8382	somatic	0	0.252620993713682	0.434895801687724
13	113771822	113809444	2	neutral	AA	9.9532	somatic	0	0.671037887745936	0.658547539202176
13	114153830	114156724	1	loss	A	-1	germline	1	0.0838288092704873	0.271015510854135
14	0	16093534	4	gain	AAAB	-1	somatic	0	NA	NA
14	16093534	16096428	5	gain	-	-1	germline	1	0.0832794200721726	0.27006269573973
14	16096428	18680770	4	gain	AAAB	-1	somatic	0	NA	NA
14	18695240	19748656	4	gain	AAAB	-1	somatic	0	NA	NA
14	19748656	19951236	4	gain	AAAB	0.704111	germline	1	2.71182737719106e-25	0
14	19951236	19957024	4	gain	AABB	2.70257	germline	1	0.0143131577660469	0.036644542803746
14	23102802	23146212	2	neutral	AA	36.4052	somatic	0	0.798987514193772	0.967513417158023
14	30433304	30494078	2	neutral	AA	41.9733	somatic	0	0.0931554714213301	0.103922872765302
14	31851364	31897668	2	neutral	AA	54.8373	somatic	0	0.019087487255347	0.0701210388169828
14	33159452	33162346	2	neutral	AA	100	somatic	0	0.986930650119309	0.960851303277856
14	36067922	36082392	2	neutral	AA	100	somatic	0	0.771151560522169	0.341867913394334
14	37471512	37477300	2	neutral	AA	54.5678	somatic	0	0.642307268920451	0.632437070834969
14	40000868	40012444	2	neutral	AA	100	somatic	0	0.662917706156144	0.970558950259068
14	40128204	40238176	2	neutral	AA	56.9088	somatic	0	0.0804820441318463	0.131791712195588
14	42200308	42214778	2	neutral	AA	100	somatic	0	0.661056543503765	0.863714784449965
14	49018572	49024360	1	loss	A	-1	germline	1	0.0208065241154841	0.0564431130756622
14	49024360	49125650	2	neutral	AA	100	somatic	0	0.0912751030309256	0.181864701492853
14	50422162	50425056	2	neutral	AA	100	somatic	0	0.195538705414543	0.430126993101498
14	53145416	53177250	2	neutral	AA	100	germline	1	0.861705732982819	0.684233357619936
14	54242242	54248030	1	loss	A	-1	germline	1	0.0152514066232818	0.0394501663146153
14	56748446	56751340	2	neutral	AA	100	somatic	0	0.137050214421741	0.353676832735394
14	56780280	56930768	2	neutral	AA	22.4242	somatic	0	0.0847844193942148	0.191884814035935
14	58415390	58421178	2	neutral	AA	100	somatic	0	0.0717109121085426	0.154445339863625
14	69548608	69557290	1	loss	A	38.0692	germline	1	0.00728746322219671	0.00998357664060801
14	69730930	69733824	2	neutral	AA	100	somatic	0	0.449063263469756	0.680235725539541
14	75044314	75070360	2	neutral	AA	100	somatic	0	0.885127033337972	0.993040396822526
14	75186120	75206378	2	neutral	AA	100	somatic	0	0.00704975347230143	0.00575392498923022
14	77724158	77727052	2	neutral	AA	100	germline	1	0.4457578822498	0.677616462849569
14	78682072	78711012	2	neutral	AA	100	somatic	0	0.375983659787752	0.219068026033419
14	81651316	81671574	2	neutral	AA	100	somatic	0	0.914598702437736	0.765315971311056
14	82151978	82154872	2	neutral	AA	36.3837	somatic	0	0.370016707396834	0.612449093329347
14	87711352	87728716	2	neutral	AA	100	somatic	0	0.115051944135055	0.143935871716418
14	90197298	90200192	2	neutral	AA	100	somatic	0	0.0948141779306243	0.28955447413323
14	95007126	95036066	2	neutral	AA	100	somatic	0	0.0101764559925839	0.0716525793738966
14	95137356	95140250	2	neutral	AA	100	somatic	0	0.470301883260733	0.697192232793895
14	96419398	96436762	2	neutral	AA	22.8285	germline	1	0.0967085787546455	0.306563321852805
14	99926926	99929820	4	gain	AABB	16.1931	germline	1	0.0832794200721726	0.27006269573973
14	101544672	101556248	2	neutral	AA	27.9156	somatic	0	0.126521317280036	0.246350529819575
14	101709630	101726994	2	neutral	AA	35.1502	somatic	0	0.00619018148827455	0.00272550072996103
14	103055340	103058234	1	loss	A	-1	somatic	0	0.124611670693965	0.33576749665177
14	103237662	103252132	2	neutral	AA	100	germline	1	0.197591306470232	0.215322370874437
14	103992996	104013254	2	neutral	AA	100	germline	1	0.813906277279351	0.983087780410352
14	104852514	104855408	1	loss	A	-1	somatic	0	0.119015299850938	0.327470448776394
15	0	17080388	4	gain	AAAB	-1	somatic	0	NA	NA
15	17080388	17083282	16	gain	-	-1	germline	1	0.0832687743669931	0.270044206736859
15	17083282	20339032	4	gain	AAAB	-1	somatic	0	0.58346912572102	0.465743813744393
15	20339032	20341926	5	gain	AAAAB	13.5909	germline	1	0.0832772908429404	0.270058997865235
15	20341926	20668948	4	gain	AAAB	0.727513	germline	1	9.2706395485989e-13	3.44169137633799e-15
15	25432472	25435366	2	neutral	AA	100	somatic	0	0.581743168357495	0.777941654773146
15	25525080	25530868	2	neutral	AA	14.1146	somatic	0	0.0901435505579024	0.293827825085267
15	33923468	33949514	2	neutral	AA	100	somatic	0	0.150122857809774	0.217454769228676
15	34510950	34519632	1	loss	A	-1	germline	1	0.00523012199347732	0.00957319348078811
15	34936368	34965308	2	neutral	AA	54.7784	somatic	0	0.224077577189228	0.460883655811955
15	35034764	35037658	2	neutral	AA	100	somatic	0	0.424180215516425	0.659703362718566
15	38108192	38111086	2	neutral	AA	100	somatic	0	0.130370149828882	0.344146147121637
15	40848810	40851704	2	neutral	AA	100	somatic	0	0.676230790637163	0.835980530882922
15	42026668	42038244	2	neutral	AA	54.5678	somatic	0	0.16704141939506	0.244893804143679
15	45221644	45233220	2	neutral	AA	100	somatic	0	0.761806935163927	0.596474302886476
15	47285066	47302430	2	neutral	AA	54.5678	somatic	0	0.00907497091016838	0.0278901768259266
15	47441342	47447130	2	neutral	AA	100	somatic	0	0.831210855247796	0.971065291608802
15	47722060	47779940	2	neutral	AA	28.0389	somatic	0	0.0507837336777321	0.0914335160402601
15	48659716	48668398	2	neutral	AA	100	germline	1	0.730331955490248	0.476575190021212
15	50647894	50679728	2	neutral	AA	36.3789	somatic	0	0.00718490476792408	0.0459000932644655
15	50682622	50931506	2	neutral	AA	100	somatic	0	1.10179703520607e-06	5.91000377470063e-06
15	50945976	50974916	2	neutral	AA	54.5678	somatic	0	0.757605106417179	0.366193260544512
15	56849736	56887358	2	neutral	AA	37.6635	somatic	0	0.929689067926797	0.33235338457434
15	57683208	57694784	2	neutral	AA	100	somatic	0	0.869319778205142	0.714413945275174
15	62710086	62747708	2	neutral	AA	100	somatic	0	0.137000895177483	0.286461828911915
15	63372812	63853216	2	neutral	AA	48.8755	somatic	0	0.145324530617503	0.237712707753554
15	63980552	64009492	2	neutral	AA	100	somatic	0	0.298485345366842	0.137579154628383
15	64009492	64029750	2	neutral	AA	54.5687	somatic	0	0.218612803455415	0.166164335004472
15	64698264	64712734	2	neutral	AA	54.5679	somatic	0	0.756672799509572	0.548067459760515
15	69380756	69406802	2	neutral	AA	14.101	somatic	0	0.374774070712093	0.323085238259643
15	69467576	69470470	2	neutral	AA	100	somatic	0	0.172342015779372	0.401143046606461
15	71224234	71227128	2	neutral	AA	100	somatic	0	0.861001170760927	0.922275938735209
15	71559938	71562832	2	neutral	AA	100	somatic	0	0.915473695777359	0.940923806227087
15	72092434	72095328	1	loss	A	-1	somatic	0	0.0832886472417788	0.270078720289647
15	72882496	72885390	2	neutral	AA	100	somatic	0	0.388889088476788	0.629318345709664
15	74711504	74717292	1	loss	A	-1	germline	1	0.0238902618148937	0.056339664055035
15	74919872	75000904	2	neutral	AA	100	somatic	0	0.0024962140983728	0.00176251910928349
15	75162968	75568128	2	neutral	AA	22.1958	somatic	0	0.00403597240599615	0.00132276197480208
15	76511572	76615756	2	neutral	AA	100	somatic	0	0.217781669660275	0.23116155041498
15	79437406	79440300	1	loss	A	-1	somatic	0	0.0840538184150745	0.271404992424449
15	79469240	79472134	2	neutral	AA	100	somatic	0	0.615414474366466	0.799746367309529
15	81098562	81101456	2	neutral	AA	100	somatic	0	0.331674627674438	0.576630111470889
15	85150162	85300650	2	neutral	AA	7.34285	somatic	0	0.358360138590028	0.635079013937204
15	88206226	88240954	2	neutral	AA	100	somatic	0	0.00203616320324199	0.0274518020529252
15	89297264	89326204	2	neutral	AA	100	somatic	0	0.217522826657989	0.443269183374336
15	94813228	94816122	2	neutral	AA	100	somatic	0	0.163043749999624	0.389052751153395
15	94986868	94992656	2	neutral	AA	100	somatic	0	0.058154341585989	0.129822403833151
15	101726994	101732782	2	neutral	AA	54.5678	somatic	0	0.976599105798523	0.932295191568282
16	845048	847942	3	gain	AAB	20.8263	germline	1	0.0832943259116135	0.27008858189609
16	914504	937656	2	neutral	AA	10.977	somatic	0	0.000902866586805189	0.00578183129163246
16	1024476	1027370	5	gain	AAAAA	5.73856	germline	1	0.0832772908429404	0.270058997865235
16	1027370	1056310	2	neutral	AA	19.4103	germline	1	0.439354741462264	0.508384620135707
16	2781134	2789816	2	neutral	AA	54.568	somatic	0	0.169663342439928	0.324667671163329
16	3762200	3791140	2	neutral	AA	54.5679	somatic	0	0.821767863292765	0.957493417053323
16	7058466	7067148	2	neutral	AA	100	somatic	0	0.477816414249539	0.669783603575063
16	9987194	10163728	2	neutral	AA	24.5886	germline	1	0.164727804625593	0.0605060820637544
16	10163728	10189774	2	neutral	AA	54.8482	germline	1	0.2571370504466	0.196852730494189
16	10519690	10525478	2	neutral	AA	100	somatic	0	0.211612210776968	0.381691377819007
16	18003574	18009362	1	loss	A	-1	somatic	0	0.0334066174418103	0.0743154159683292
16	19933872	19954130	1	loss	A	-1	germline	1	1.54322315027647e-05	7.25623141828446e-06
16	21557406	21583452	4	gain	AABB	6.05999	germline	1	2.03884646782799e-07	3.05123671884289e-08
16	22613716	22619504	4	gain	AABB	36.6545	germline	1	0.0143128217210978	0.0366415071530456
16	22619504	22697642	4	gain	AAAB	2.09349	germline	1	1.03642275380168e-18	0
16	23036240	23039134	1	loss	A	-1	somatic	0	0.0833205938393641	0.270134195244849
16	25328288	25331182	0	loss	-	-1	germline	1	0.0832659356984661	0.270039276492156
16	25901300	25907088	2	neutral	AA	54.5678	somatic	0	0.755903618761724	0.633651689184309
16	26555344	26601648	2	neutral	AA	48.1114	somatic	0	0.590509277859671	0.437179959331051
16	26876578	26905518	2	neutral	AA	100	somatic	0	0.977632438562186	0.677522896400889
16	29759002	29805306	2	neutral	AA	30.3125	somatic	0	0.962011063327339	0.941333689218154
16	30632990	30670612	2	neutral	AA	22.1294	somatic	0	0.0614750957925927	0.103243749507581
16	34192610	34959520	2	neutral	AA	0.750489	somatic	0	1.07254275787753e-21	1.11022302462516e-16
16	55747122	55776062	1	loss	A	-1	somatic	0	0.0228104103547645	0.0836180248035344
16	56650050	56667414	2	neutral	AA	54.5685	somatic	0	0.641107768287087	0.584480643992271
16	58221492	58224386	2	neutral	AA	100	somatic	0	0.865024489507828	0.923779496873179
16	58635334	58641122	1	loss	A	-1	germline	1	0.100155600485973	0.316487652415111
16	58641122	58644016	0	loss	-	-1	germline	1	0.0832744519392288	0.27005406742341
16	61254404	61263086	2	neutral	AA	54.5679	somatic	0	0.870925968323107	0.957470463736967
16	69725142	69756976	2	neutral	AA	22.0389	somatic	0	0.0498701974738229	0.109277151158108
16	70807498	71386298	2	neutral	AA	15.0563	somatic	0	0.104007363888195	0.338512736896502
16	73195048	73209518	2	neutral	AA	56.578	somatic	0	0.21524882544895	0.167748512352522
16	74109552	74112446	1	loss	A	-1	somatic	0	0.0885165407138505	0.279041729800251
16	74451044	74479984	2	neutral	AA	100	germline	1	0.157584629499456	0.06929295296743
16	76502890	76511572	1	loss	A	-1	germline	1	0.025253171837166	0.0570786358963914
16	76879110	76899368	2	neutral	AA	54.5683	somatic	0	0.085574606778074	0.0543973591788157
16	77275588	77385560	2	neutral	AA	100	somatic	0	0.628275806043744	0.488700650584214
16	78337686	78352156	1	loss	A	-1	germline	1	0.000243323616363718	0.000269160722417672
16	79255084	79257978	2	neutral	AA	100	somatic	0	0.674507515836146	0.835053552724418
16	80942286	80950968	1	loss	A	-1	germline	1	0.00566995673218412	0.00930159970864697
16	81289566	81330082	2	neutral	AA	28.3332	somatic	0	0.976025206590439	0.655106500292478
16	81442948	81445842	1	loss	A	-1	somatic	0	0.121629435738822	0.331365761270233
16	84397722	84400616	2	neutral	AA	100	somatic	0	0.980757146777239	0.959323538461299
16	86605844	86614526	2	neutral	AA	100	somatic	0	0.166697215493222	0.227971468503562
16	87219372	87225160	2	neutral	AA	8.73743	somatic	0	0.0342958880026131	0.085843916148877
16	88996288	89002076	2	neutral	AA	100	somatic	0	0.0422580507676248	0.0710325460485466
16	89386978	89427494	2	neutral	AA	100	somatic	0	0.0597683816196048	0.048221995757423
17	4821404	4824298	2	neutral	AA	100	somatic	0	0.973451577369189	0.957466621239072
17	5394416	5408886	2	neutral	AA	54.5678	somatic	0	0.446855816541725	0.591413073631043
17	19780490	19786278	2	neutral	AA	100	germline	1	0.0533405548868208	0.0816180075918009
17	21291158	21302734	4	gain	AABB	0.309669	germline	1	0.000532382058376671	0.000671246487275456
17	21855488	21858382	6	gain	-	-1	germline	1	0.0832772908429404	0.270058997865235
17	21858382	21924944	3	gain	-	-1	somatic	0	7.97872656202621e-16	1.77635683940025e-15
17	21968354	21977036	7	gain	AAAAABB	-1	germline	1	NA	NA
17	21977036	22159358	7	gain	AAAAABB	0.307277	somatic	0	9.14379104934442e-11	1.38500322321988e-12
17	26783970	26804228	3	gain	-	-1	germline	1	6.1080688657456e-06	4.42932310407151e-06
17	26807122	26827380	4	gain	-	-1	germline	1	2.21309109784021e-05	1.23258086527356e-05
17	26827380	26865002	3	gain	-	-1	somatic	0	9.85061538466338e-08	2.97100962054486e-07
17	26865002	26867896	7	gain	-	-1	germline	1	0.0832744519392288	0.270054067423403
17	26867896	26876578	3	gain	-	-1	germline	1	0.00284881618463978	0.00545717004208568
17	26876578	26879472	5	gain	-	-1	germline	1	0.0832787103241953	0.270061463110791
17	26937352	26940246	18	gain	AAAAAAAAAAAABBBBBB	22.4465	germline	1	0.083268064692512	0.270042974169522
17	33344668	33364926	2	neutral	AA	100	somatic	0	0.274843174618402	0.695981734941282
17	33772980	33784556	2	neutral	AA	100	somatic	0	0.143008790376024	0.250376255842885
17	42110594	42136640	2	neutral	AA	59.5088	somatic	0	0.736650595932712	0.987300258124423
17	46978302	47177988	2	neutral	AA	42.5138	somatic	0	0.0234796554675413	0.00251405146806583
17	51953088	51976240	2	neutral	AA	36.3788	somatic	0	0.996223570249172	0.644270276733159
17	52650542	53287222	2	neutral	AA	27.0287	somatic	0	0.00284602968019896	0.0127634144365728
17	79857036	79862824	2	neutral	AA	54.9945	somatic	0	0.114286470472364	0.167268239455468
17	80629734	80641310	3	gain	AAB	10.0359	germline	1	0.000533135922087958	0.000672248171590173
17	81590542	81625270	2	neutral	AA	54.5678	somatic	0	0.00561489917421972	0.0162075193604015
18	5304702	5310490	1	loss	A	-1	somatic	0	0.0296402333710399	0.0566692079065604
18	14047476	14076416	2	neutral	AA	100	somatic	0	0.785536644870818	0.997687954165604
18	22738158	22758416	2	neutral	AA	100	somatic	0	0.558716559457123	0.904073140677451
18	25336970	25339864	1	loss	A	-1	germline	1	0.107980941655923	0.310623230672636
18	29594044	29596938	1	loss	A	-1	somatic	0	0.0833099438708258	0.270115702669078
18	37587272	37815898	2	neutral	AA	10.1519	somatic	0	0.025388744449187	0.165018576956744
18	39812758	39882214	2	neutral	AA	100	somatic	0	0.135350028425284	0.384169191087648
18	41282910	41285804	1	loss	A	-1	germline	1	0.117617772195973	0.325373468266574
18	41285804	41288698	0	loss	-	-1	germline	1	0.0832652260435832	0.270038043941244
18	42472344	42478132	1	loss	A	-1	somatic	0	0.0304327176099378	0.0600138269984661
18	50870732	51212224	2	neutral	AA	12.1415	somatic	0	0.0208169248425879	0.053304919200919
18	51212224	51264316	2	neutral	AA	29.7085	somatic	0	0.124690429665093	0.0980363276324872
18	53426134	53429028	1	loss	A	-1	somatic	0	0.104920424792634	0.305823783220097
18	57278048	57283836	1	loss	A	-1	germline	1	0.0213402069079692	0.0571267081128981
18	64544882	64547776	1	loss	A	-1	germline	1	0.0964529063086151	0.292236101978904
18	66055550	66067126	1	loss	A	-1	germline	1	0.00165305128837951	0.00162310240768804
18	75770708	75782284	2	neutral	AA	22.5253	germline	1	0.192125897411159	0.335775274872395
18	77252436	77304528	2	neutral	AA	14.6574	somatic	0	0.121681487271287	0.278743244551425
18	80048040	80259302	2	neutral	AA	12.4749	somatic	0	8.48466418874174e-06	4.93441055737787e-05
19	1536714	1632216	2	neutral	AA	38.8717	somatic	0	0.00759445580661551	0.0164403737425547
19	1855054	1901358	2	neutral	AA	27.2949	somatic	0	0.0317196746673232	0.00853420778254954
19	2364398	2367292	2	neutral	AA	100	somatic	0	0.802667489919121	0.898892341579513
19	3235492	3249962	2	neutral	AA	13.0684	somatic	0	0.0220620881306713	0.0457139359140689
19	5339430	5342324	2	neutral	AA	100	somatic	0	0.222199448796822	0.461702627415126
19	6635942	6638836	1	loss	A	-1	somatic	0	0.124578419840049	0.335718660804905
19	7449156	7452050	8	gain	AAAAABBB	12.9981	germline	1	0.0832737422255503	0.270052834823211
19	8884580	8933778	2	neutral	AA	3.41561	somatic	0	0.421841820848069	0.839016923969009
19	10638344	10641238	2	neutral	AA	100	somatic	0	0.759716763646638	0.879399091715947
19	11836460	11842248	2	neutral	AA	100	somatic	0	0.868132716127054	0.904120129237083
19	13214004	13219792	2	neutral	AA	36.7854	somatic	0	0.1341880564032	0.166229807601995
19	14594442	14608912	2	neutral	AA	31.9544	somatic	0	0.260608420776737	0.254367258127884
19	14935934	14938828	0	loss	-	-1	germline	1	0.0832652260435832	0.270038043941244
19	16044336	16081958	2	neutral	AA	100	somatic	0	0.0868561387636458	0.232924616016329
19	16490012	16585514	2	neutral	AA	100	somatic	0	0.276850022211839	0.631186008503813
19	18411628	18431886	2	neutral	AA	54.5678	somatic	0	0.866439769472167	0.954889088200974
19	19592380	19609744	2	neutral	AA	54.5777	somatic	0	0.0304885913851855	0.0855705321815369
19	20414276	20535824	1	loss	A	-1	germline	1	3.04321737566575e-22	0
19	22414030	22419818	2	neutral	AA	100	somatic	0	0.119958714272825	0.139363969098518
19	23557160	23646874	2	neutral	AA	51.895	germline	1	0.0071899504213006	0.00908600687124828
19	23759740	23843666	2	neutral	AA	57.1875	germline	1	0.261302378835112	0.625266231031676
19	24329858	24353010	3	gain	AAB	0.859788	germline	1	9.66501977584065e-07	2.25742602832923e-07
19	24353010	24390632	4	gain	AABB	0.547546	germline	1	4.24873969715272e-10	1.02399200230252e-11
19	24390632	24419572	4	gain	AABB	2.08903	somatic	0	0.000532488565182398	0.000671332997318475
19	27336724	27342512	4	gain	AAAB	2.45389	germline	1	0.0143128217210978	0.0366415071530456
19	27345406	27380134	6	gain	AAAABB	0.167777	germline	1	9.22947805844105e-09	5.58529555938492e-10
19	27380134	27383028	3	gain	AAB	6.92505	germline	1	0.083336925932989	0.270162552322402
19	27383028	27388816	7	gain	AAAAABB	0.57488	germline	1	0.0143091256859697	0.0366361109839547
19	27388816	27391710	4	gain	AAAB	6.83593	germline	1	0.0832794200721726	0.27006269573973
19	27391710	27397498	7	gain	AAAAABB	0.707747	germline	1	0.0143090136980496	0.0366357737464741
19	27397498	27400392	5	gain	AAABB	7.66343	germline	1	0.0832772908429404	0.270058997865235
19	28230970	28233864	3	gain	-	-1	somatic	0	0.083676224294098	0.27075114325834
19	28610084	28615872	2	neutral	AA	22.9046	somatic	0	0.233391913958483	0.29282691284539
19	29510118	29515906	1	loss	A	-1	somatic	0	0.02335194862236	0.0559800931379577
19	32369390	32372284	2	neutral	AA	100	germline	1	0.162888124795821	0.388850603647838
19	32942402	32945296	2	neutral	AA	100	somatic	0	0.631912092140715	0.80993551932017
19	33871376	33882952	2	neutral	AA	100	somatic	0	0.728034921814809	0.922901940476074
19	34947944	34953732	2	neutral	AA	100	somatic	0	0.68854802415373	0.656071657304526
19	36348640	36357322	1	loss	A	-1	somatic	0	0.00629250982191265	0.00959116964019469
19	38467048	38493094	2	neutral	AA	39.1934	somatic	0	0.642338113508498	0.664204651500947
19	38959028	38964816	2	neutral	AA	54.5678	somatic	0	0.969961862229159	0.997629277208803
19	39908260	39948776	2	neutral	AA	36.7144	somatic	0	0.0995643141516249	0.0395544772352585
19	40724368	40770672	2	neutral	AA	34.4792	somatic	0	0.0588871205736276	0.0684932710968258
19	44755710	44784650	2	neutral	AA	27.3016	somatic	0	0.0340315265636271	0.0537568006847818
19	46567354	46576036	2	neutral	AA	24.7526	somatic	0	0.0725820327954912	0.0826372423704965
19	46940680	46943574	2	neutral	AA	100	somatic	0	0.155529444068919	0.379082353108832
19	51631854	51643430	1	loss	A	-1	germline	1	0.0011597022042103	0.00127814571139229
19	52847334	52913896	2	neutral	AA	15.7511	somatic	0	0.25899948893283	0.342097342033558
19	55434570	55451934	2	neutral	AA	16.1855	somatic	0	0.00195720799563076	0.00215916573921826
20	63668	66562	7	gain	-	-1	germline	1	0.0832744519392288	0.270054067423403
20	1583018	1603276	1	loss	A	-1	germline	1	2.18728275438397e-05	6.08385780376253e-06
20	13902776	13914352	2	neutral	AA	100	somatic	0	0.424999553901338	0.685781210774505
20	20136452	20185650	2	neutral	AA	100	somatic	0	0.00479074586280416	0.0129432348712594
20	22081220	22084114	1	loss	A	-1	somatic	0	0.0842234330886928	0.27169829976432
20	28780830	28786618	8	gain	-	-1	germline	1	0.014308677738928	0.0366357737464741
20	28795300	28803982	3	gain	-	-1	germline	1	0.0148247946390879	0.0903394672690409
20	28803982	28832922	10	gain	-	-1	germline	1	4.59543275967741e-06	1.66394176515094e-06
20	28835816	28838710	3	gain	-	-1	germline	1	0.0832985851198057	0.270095978273413
20	28870544	28873438	9	gain	-	-1	germline	1	0.0832730325167717	0.270051602227127
20	28942894	28945788	4	gain	-	-1	germline	1	0.0832872276233228	0.270076254929095
20	29264128	29313326	3	gain	-	-1	somatic	0	2.92243299080453e-11	4.42623715457557e-12
20	29408828	29411722	7	gain	-	-1	germline	1	0.0832758713812849	0.270056532636105
20	29889232	29895020	5	gain	-	-1	germline	1	0.0143103576041203	0.0366381344658774
20	30939754	30942648	6	gain	-	-1	germline	1	0.0832772908429404	0.270058997865235
20	31067090	31069984	47	gain	-	-1	germline	1	0.0832652260435832	0.270038043941237
20	31162592	31165486	3	gain	-	-1	germline	1	0.0833056841921713	0.270108305897494
20	31165486	31168380	6	gain	-	-1	germline	1	0.0832772908429404	0.270058997865235
20	31168380	31182850	3	gain	-	-1	germline	1	0.292257777740764	0.0547237151678289
20	31182850	31188638	16	gain	-	-1	germline	1	0.014307333972022	0.0366337503786265
20	31188638	31191532	4	gain	-	-1	germline	1	0.0832808395828269	0.270065161009926
20	31191532	31240730	3	gain	AAB	1.93315	germline	1	2.227453110365e-05	1.2557607627639e-05
20	31240730	31243624	47	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBB	100	germline	1	0.0832652260435832	0.270038043941237
20	31243624	31246518	2	neutral	AA	16.7979	germline	1	0.106173942978819	0.307801995010857
20	42808048	42819624	2	neutral	AA	100	germline	1	0.768796984923993	0.779336347253357
20	44359232	44365020	2	neutral	AA	100	somatic	0	0.39491882332616	0.841614801920833
20	49128544	49258774	2	neutral	AA	50.2124	somatic	0	7.72903404855959e-07	2.50479796171099e-06
20	64087630	64090524	4	gain	AAAA	13.065	germline	1	0.0832829688855583	0.270068858946022
21	0	10270806	6	gain	AAAABB	-1	somatic	0	4.32523415360959e-08	4.12648348824263e-09
21	10270806	10273700	33	gain	-	-1	germline	1	0.0832659356984661	0.270039276492148
21	10273700	10655708	6	gain	AAAABB	-1	somatic	0	0.0145762638882507	0.0374420035560767
21	10655708	10739634	6	gain	AAAABB	0.234745	somatic	0	4.96992966767445e-20	0
21	32328874	32360708	2	neutral	AA	100	somatic	0	0.989446356375693	0.985970851410657
21	39456796	39566768	2	neutral	AA	100	somatic	0	0.0128282731776575	0.0080858716597122
21	41803830	41806724	3	gain	AAA	4.94972	germline	1	0.0832943259116135	0.27008858189609
21	43262406	43265300	3	gain	-	-1	germline	1	0.0832907767062145	0.270082418361258
22	11211356	11214250	8	gain	-	-1	somatic	0	0.0832744519392288	0.270054067423403
22	11619410	11630986	4	gain	AABB	12.7513	germline	1	0.0143111416007453	0.0366391462435071
22	20596598	20599492	1	loss	A	-1	germline	1	0.0932343660838993	0.286941962151754
22	20764450	20778920	2	neutral	AA	54.5678	germline	1	0.853830201229233	0.312859036979809
22	20917832	20938090	2	neutral	AA	54.5678	somatic	0	0.347821703577187	0.536770075642095
22	23128848	23137530	1	loss	A	-1	germline	1	0.0191938745259157	0.0773880683267498
22	23172258	23175152	2	neutral	AA	100	somatic	0	0.173765133462631	0.402950976130464
22	23290912	23762634	1	loss	A	-1	somatic	0	4.13694641465281e-45	0
22	28908166	28911060	2	neutral	AA	100	somatic	0	0.33449570359868	0.579323641115793
22	29322008	29324902	2	neutral	AA	100	somatic	0	0.402385416866351	0.641110423019659
22	29868974	29871868	2	neutral	AA	100	somatic	0	0.449218506355624	0.680398295121797
22	30250982	30253876	2	neutral	AA	100	germline	1	0.138110559060334	0.355174573995005
22	34467540	34470434	1	loss	A	-1	somatic	0	0.0850316261622055	0.27309248848599
22	35509380	35512274	2	neutral	AA	100	germline	1	0.443914647950996	0.676040019114805
22	39861956	39893790	2	neutral	AA	54.5693	somatic	0	0.963327346393472	0.398405044126242
22	40631760	41204772	2	neutral	AA	47.6841	somatic	0	1.18862690479573e-22	0
22	41204772	41575204	2	neutral	AA	100	somatic	0	0.00541363929526857	0.00229206599164744
22	41647554	42321856	2	neutral	AA	36.5707	germline	1	0.000650506365245439	0.000285116500794103
22	42321856	42324750	1	loss	A	-1	somatic	0	0.0834058332940711	0.270282169117608
22	42324750	42408676	2	neutral	AA	100	germline	1	0.71493855018749	0.853936005659039
22	42521542	42553376	3	gain	AAB	2.75782	germline	1	2.21958491193654e-05	1.23667154384721e-05
22	42973006	42999052	2	neutral	AA	38.7286	somatic	0	0.304562582821366	0.592614444597152
22	43331862	43337650	2	neutral	AA	54.5679	somatic	0	0.546148986183986	0.942574368063394
22	44408430	44420006	2	neutral	AA	100	somatic	0	0.661093739751829	0.589433758808807
22	50642106	50645000	4	gain	AABB	19.1425	germline	1	0.0832801298250498	0.270063928372774
X	3521998	3524892	2	gain	AA	9.09505	somatic	0	0.283817473347678	0.528938507469159
X	26083622	26086516	0	loss	-	-1	somatic	0	0.0832666453582485	0.270040509047173
X	50225370	50228264	0	loss	-	-1	somatic	0	0.0832666453582485	0.270040509047173
X	58487740	58490634	0	loss	-	-1	germline	1	0.0832652260435832	0.270038043941244
X	70917470	70920364	0	loss	-	-1	germline	1	0.0832652260435832	0.270038043941244
X	77865964	77868858	0	loss	-	-1	somatic	0	0.0832652260435832	0.270038043941244
X	78268230	78271124	2	gain	-	-1	somatic	0	0.19882234361667	0.434103937233886
X	79666032	79671820	0	loss	-	-1	germline	1	0.0143082298042563	0.0366377972121019
X	108770990	108776778	0	loss	-	-1	somatic	0	0.0143507265941044	0.0367658111179635
X	145339574	145345362	0	loss	-	-1	somatic	0	0.0143248116278019	0.0366870650235617
Y	10623874	10626768	2	gain	AB	2.81052	somatic	0	0.30366952875895	0.549207452832519
Y	10655708	10658602	7	gain	-	-1	germline	1	0.0832744519392288	0.270054067423403
Y	10754104	10759892	4	gain	-	-1	germline	1	0.0143140539199368	0.0366475786744853
Y	10759892	10765680	5	gain	-	-1	germline	1	0.0143102456076952	0.0366381344658774
Y	10765680	10774362	2	gain	-	-1	germline	1	0.0836626433592124	0.168457655552039
Y	10774362	10777256	5	gain	-	-1	germline	1	0.0832794200721726	0.27006269573973
Y	10777256	10794620	2	gain	-	-1	germline	1	0.118544859247069	0.3317008474525
Y	10794620	10797514	5	gain	-	-1	germline	1	0.0832772908429404	0.270058997865235
Y	10797514	10809090	3	gain	-	-1	germline	1	0.0429645477120267	0.0222359160988751
Y	10820666	10826454	3	gain	-	-1	somatic	0	0.0143340061501022	0.0367042886674432
Y	10826454	10901698	2	gain	-	-1	somatic	0	0.00483845372069069	0.00235009908248107
Y	10924850	10927744	4	gain	-	-1	germline	1	0.0832801298250498	0.270063928372774
Y	10927744	10933532	2	gain	-	-1	germline	1	0.0718245027490216	0.163543114855442
Y	10933532	10939320	3	gain	-	-1	germline	1	0.0143174149378488	0.036653313697392
Y	10939320	10985624	2	gain	-	-1	germline	1	0.82559458632028	0.120302826962991
Y	10985624	10988518	12	gain	-	-1	germline	1	0.083270193730654	0.270046671883855
Y	10988518	10997200	3	gain	-	-1	germline	1	0.261019223149889	0.139268124818618
Y	10997200	11000094	6	gain	-	-1	germline	1	0.0832772908429404	0.270058997865235
Y	11002988	11037716	2	gain	-	-1	germline	1	0.902699754513692	0.40254175664989
Y	11037716	11040610	2	gain	AA	5.89743	germline	1	0.658693449361034	0.825899967593922
Y	11292388	11306858	32	gain	AAAAAAAAAAAAAAAAAAAAABBBBBBBBBBB	9.44858	germline	1	0.000107522975809491	9.08113531408183e-05
Y	11306858	11332904	9	gain	AAAAAABBB	0.365134	germline	1	0.000107552876095491	9.0834344533941e-05
Y	11685972	11688866	3	gain	AAB	24.3723	germline	1	0.0833404767312382	0.270168717191966
Y	11688866	11691760	6	gain	AAAABB	60.6428	germline	1	0.0832772908429404	0.270058997865235
Y	11714912	11717806	3	gain	AAA	5.83019	germline	1	0.0832943259116135	0.27008858189609
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Y	11723594	11746746	2	gain	AA	3.77583	germline	1	0.49106475848488	0.563589261134127
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