chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	1792854	1953558	2	neutral	AA	15.2923	somatic	0	3.76129499638175e-09	5.20335997844512e-07
1	5654772	5669838	2	neutral	AA	2.20434	somatic	0	0.232550704870535	0.650611879687299
1	5669838	5672349	5	gain	AAABB	0.90583	germline	1	0.083279313420275	0.270062591527791
1	8253657	8537400	2	neutral	AA	60.4662	somatic	0	1.11021950121939e-05	3.12164069435905e-05
1	16605243	16617798	7	gain	AAAAABB	4.26136	germline	1	0.0005322092827935	0.00067109697175427
1	16904052	16944228	3	gain	AAB	1.15505	germline	1	2.93079689378615e-07	2.34997008408122e-07
1	21840678	21875832	2	neutral	AA	59.4342	somatic	0	0.683257067666838	0.916422044229571
1	31430187	31432698	6	gain	AAAABB	7.5664	germline	1	0.0832743808188056	0.270054024915059
1	32522472	32655555	2	neutral	AA	20.8295	somatic	0	5.9198858950248e-13	1.19047638413861e-09
1	34636734	34646778	1	loss	A	-1	germline	1	0.00053502861214279	0.000675165766977681
1	51852150	51872238	2	neutral	AA	36.3786	somatic	0	0.209444368035538	0.655909875842091
1	52093206	52110783	2	neutral	AA	54.5683	somatic	0	0.00830178967259139	0.0345535786643977
1	55661337	55668870	1	loss	A	-1	germline	1	0.00275077093401342	0.00511799433202831
1	72299223	72349443	1	loss	A	-1	germline	1	1.05840614021996e-14	0
1	118315809	118416249	2	neutral	AA	14.4543	somatic	0	0.945969204234334	0.861015871786196
1	118531755	118667349	2	neutral	AA	100	somatic	0	0.0094190208566487	0.00970459933878809
1	125067888	125075421	3	gain	-	-1	germline	1	0.00270287223641465	0.00496128186449796
1	125080443	125082954	10	gain	-	-1	germline	1	0.0832688319250434	0.270044387712839
1	125082954	125085465	5	gain	-	-1	germline	1	0.0832756139469851	0.270056166549646
1	125085465	125087976	1	loss	A	-1	germline	1	0.0838103301288366	0.270983585911191
1	125148240	125163306	3	gain	-	-1	germline	1	2.33810985087022e-05	1.51189957802167e-05
1	125163306	125165817	6	gain	-	-1	germline	1	0.0832743808188056	0.270054024915059
1	152349903	152410167	2	neutral	AA	18.1893	somatic	0	0.384059776847641	0.78787901121864
1	152583426	152613558	1	loss	A	-1	germline	1	2.01249023496682e-09	7.71651631481518e-11
1	164842128	165083184	2	neutral	AA	100	somatic	0	0.0180049880333997	0.11843861231624
1	169258977	169271532	1	loss	A	-1	germline	1	0.000108345926916946	9.14857866829433e-05
1	170436636	170524521	2	neutral	AA	100	somatic	0	0.781143273414372	0.858492092158993
1	183734892	183777579	2	neutral	AA	47.7044	somatic	0	0.345276673550473	0.37449341820049
1	205693587	205721208	2	neutral	AA	36.3897	somatic	0	0.846614999499491	0.851894669547685
1	209904534	209912067	1	loss	A	-1	germline	1	0.00271244929490129	0.00498006011349106
1	210489597	210542328	2	neutral	AA	27.4084	somatic	0	0.242378723229958	0.486097519005554
1	216222210	216267408	2	neutral	AA	30.145	somatic	0	0.034176225197104	0.0438516119726098
1	228066597	228071619	1	loss	A	-1	germline	1	0.0143267073809324	0.0366923216246388
1	230683059	231012000	2	neutral	AA	2.96112	germline	1	0.424483551178356	0.749673191064352
1	234775989	234783522	6	gain	AAAABB	1.78751	germline	1	0.00270060245187651	0.00495848560179357
1	236096775	236099286	5	gain	AAABB	9.86392	germline	1	0.0832786968321483	0.270061520690351
1	245922318	245942406	2	neutral	AA	100	somatic	0	0.127292589082469	0.319331012067607
2	30132	35154	1	loss	A	-1	somatic	0	0.0145749430595268	0.0374414382926405
2	3178926	3181437	5	gain	-	-1	germline	1	0.0832768470899565	0.27005830819663
2	6156972	6169527	1	loss	A	-1	somatic	0	0.000537799585698067	0.000680757335954851
2	18292635	18297657	1	loss	A	-1	somatic	0	0.014389550671315	0.0368796132988159
2	32914188	32916699	5	gain	AAABB	4.3574	germline	1	0.0832786968321483	0.270061520690351
2	34471008	34506162	1	loss	A	-1	germline	1	4.33889343656826e-10	1.05195852029283e-11
2	35751618	35766684	1	loss	A	-1	germline	1	2.23030523785567e-05	1.24274416198888e-05
2	45637425	45647469	2	neutral	AA	100	somatic	0	0.952569250441271	0.976705613122172
2	55764288	55801953	2	neutral	AA	54.5678	somatic	0	0.349754888823328	0.730207039618791
2	59395194	59402727	1	loss	A	-1	somatic	0	0.00271058120594409	0.00498173244004418
2	73695339	73858554	2	neutral	AA	54.5873	somatic	0	0.00818410663456801	0.0050415836215143
2	75920085	76113432	2	neutral	AA	95.933	somatic	0	0.53091349449265	0.518958591656085
2	88944642	89004906	2	neutral	AA	0.60599	germline	1	0.0139518283278115	0.039398212671279
2	89773272	89826003	4	gain	AAAB	3.56915	germline	1	4.37512445437655e-14	1.11022302462516e-16
2	89826003	89828514	12	gain	AAAAAAAABBBB	15.2509	germline	1	0.0832682153997812	0.270043316928089
2	89828514	89841069	31	gain	AAAAAAAAAAAAAAAAAAAABBBBBBBBBBB	38.7938	germline	1	0.000107528944890312	9.08152912092453e-05
2	89841069	89843580	5	gain	AAAAB	23.1513	germline	1	0.0832756139469851	0.270056166549646
2	89843580	89851113	4	gain	AAAB	13.7668	germline	1	0.00270163073210652	0.00495973481717826
2	91410444	91415466	5	gain	-	-1	germline	1	0.0143110344356095	0.0366395487836898
2	92073348	92075859	2	neutral	AA	27.2847	germline	1	0.122344006505077	0.332425198303038
2	106263009	106270542	1	loss	A	-1	somatic	0	0.00279230831138801	0.00525766326478316
2	117040221	117045243	1	loss	A	-1	germline	1	0.0143176522187584	0.036662995175594
2	120372318	120409983	2	neutral	AA	50.2246	somatic	0	0.00471730937611176	0.0108724543497478
2	126878319	126915984	2	neutral	AA	100	germline	1	0.00138838768373036	0.0180252495869587
2	126915984	126921006	1	loss	A	-1	germline	1	0.0143345982506833	0.0366896814040594
2	132826878	132872076	2	neutral	AA	100	somatic	0	0.614397619099334	0.287163772382319
2	133976916	134152686	2	neutral	AA	27.2839	somatic	0	0.907435415930605	0.190892374579245
2	134175285	134378676	2	neutral	AA	22.1496	somatic	0	0.000181580572055535	0.00126237235045468
2	142022160	142456563	2	neutral	AA	64.0809	somatic	0	0.95450003240093	0.844445740957089
2	149186043	149198598	2	neutral	AA	100	somatic	0	0.548074260922558	0.781892033522439
2	158637447	158710266	2	neutral	AA	25.4951	somatic	0	0.193059869548904	0.565240018913145
2	169464879	169469901	1	loss	A	-1	germline	1	0.0144218470916858	0.036979036356909
2	172041165	172046187	1	loss	A	-1	germline	1	0.014313564445785	0.0366503911088051
2	175576653	175684626	2	neutral	AA	54.5873	somatic	0	0.209763465557048	0.623077498501707
2	176400261	176407794	0	loss	-	-1	germline	1	0.0143074347166444	0.0366342751538302
2	179202537	179212581	1	loss	A	-1	germline	1	0.000535186987969079	0.00067526292432829
2	203034438	203039460	1	loss	A	-1	somatic	0	0.0143345982506833	0.0366753097854723
2	241588332	241593354	3	gain	AAB	3.52117	somatic	0	0.0143363522978242	0.036711101320769
3	185814	193347	1	loss	A	-1	germline	1	0.0028275243373973	0.00531956171470305
3	2779677	2782188	2	neutral	AA	27.2839	somatic	0	0.166081370781085	0.393056637483195
3	2782188	2922804	3	gain	AAB	0.48787	germline	1	9.70880314616917e-38	0
3	2922804	2932848	3	gain	AAB	4.3989	germline	1	0.000533032012063118	0.000672138882356288
3	14327766	14370453	2	neutral	AA	36.3786	somatic	0	0.160340408728198	0.0466741330996905
3	27593379	27781704	2	neutral	AA	36.3786	somatic	0	0.110107243980267	0.0198202775203667
3	32060448	32067981	1	loss	A	-1	germline	1	0.0147289211724678	0.0379076798840955
3	37936188	37946232	1	loss	A	-1	germline	1	0.000554925420295836	0.000735149778556932
3	47631159	47771775	2	neutral	AA	54.5678	somatic	0	1.43657071606346e-10	2.27896890248047e-09
3	61496901	61527033	2	neutral	AA	54.5678	somatic	0	0.289865452146094	0.362466436318966
3	65203137	65228247	1	loss	A	-1	germline	1	2.06117357852524e-07	3.09131809039798e-08
3	68690916	68698449	1	loss	A	-1	somatic	0	0.00271574355216761	0.00498418213263552
3	75395286	75405330	1	loss	A	-1	germline	1	0.0143534154042354	0.0367055252210219
3	90283005	90508995	2	neutral	AA	0.770049	somatic	0	0.181517325649005	0.061446093822433
3	96610725	96623280	1	loss	A	-1	somatic	0	0.00986173226832158	0.0467448622723704
3	98687322	98694855	1	loss	A	-1	germline	1	0.00273185770518573	0.00505098461083986
3	99179478	99184500	1	loss	A	-1	germline	1	0.0143175548788642	0.036662995175594
3	101637747	101642769	1	loss	A	-1	germline	1	0.0144193002072536	0.0369636798339839
3	122757768	122873274	2	neutral	AA	100	somatic	0	0.522147711794461	0.161112943980868
3	136302102	136309635	1	loss	A	-1	somatic	0	0.00338210299113242	0.00742828956855779
3	143448408	143453430	1	loss	A	-1	somatic	0	0.0218022293397225	0.0599065893347439
3	169535187	169595451	2	neutral	AA	72.311	somatic	0	0.0817480017256065	0.151619985053966
3	184686561	184699116	2	neutral	AA	100	somatic	0	0.94514345856644	0.963971201070285
3	192377754	192463128	2	neutral	AA	46.7346	somatic	0	0.220425767565932	0.0430898778310167
3	193058235	193065768	1	loss	A	-1	germline	1	0.00335372222487994	0.00725537778566632
3	193156164	193168719	1	loss	A	-1	germline	1	0.000114944714689049	0.00010443082583822
3	197382177	197389710	3	gain	AAB	2.4151	somatic	0	0.00272200378679977	0.00500633910811732
4	39701421	39713976	1	loss	A	-1	germline	1	0.000109103606775429	9.23692604880566e-05
4	40294017	40296528	4	gain	-	-1	germline	1	0.0832811632068433	0.270065804058705
4	42759819	42767352	1	loss	A	-1	germline	1	0.00275215027691938	0.00512553079489519
4	49652514	49657536	16	gain	-	-1	germline	1	0.0143069483294016	0.0366328103745109
4	61072542	61077564	1	loss	A	-1	germline	1	0.0143122020835912	0.0366457021913443
4	63827109	63849708	1	loss	A	-1	germline	1	9.96183387783733e-07	2.55246899061312e-07
4	70619364	70624386	1	loss	A	-1	germline	1	0.0143489285102744	0.0367313576003055
4	114253011	114260544	1	loss	A	-1	germline	1	0.00274805916789858	0.00510582269158599
4	129143241	129148263	1	loss	A	-1	germline	1	0.0143357675944091	0.0367140364077718
4	165080673	165085695	1	loss	A	-1	germline	1	0.0143575132142687	0.0367821880817463
4	172503189	172513233	1	loss	A	-1	germline	1	0.0143131751877715	0.0366515634201858
4	173482479	173484990	0	loss	-	-1	germline	1	0.0832700649866612	0.270046529291643
4	189269136	189279180	1	loss	A	-1	germline	1	0.000558499470294607	0.000747485978018214
5	414315	416826	4	gain	AAAB	32.8958	germline	1	0.0832885626859483	0.27007865446131
5	758322	778410	1	loss	A	-1	germline	1	0.00271941605338148	0.00498657314063977
5	8507268	8567532	2	neutral	AA	54.5678	somatic	0	0.454445045317226	0.623560876616228
5	8592642	8597664	1	loss	A	-1	germline	1	0.0143357675944091	0.03669173489459
5	17875809	17986293	2	neutral	AA	19.1891	somatic	0	0.423176793312094	0.253104198324905
5	23902209	23907231	1	loss	A	-1	germline	1	0.0151480093856372	0.0391757737227962
5	35706420	35721486	2	neutral	AA	4.80642	somatic	0	0.784621264963352	0.331199753667268
5	36487341	36565182	2	neutral	AA	74.1225	somatic	0	0.884380009214383	0.479557849379673
5	40047939	40088115	2	neutral	AA	100	somatic	0	0.12241603049885	0.24743698129729
5	45004653	45014697	1	loss	A	-1	germline	1	0.000536976909780478	0.000677284605900996
5	46270197	46275219	1	loss	A	-1	germline	1	0.0143582938664976	0.0367146234498075
5	46403280	46410813	1	loss	A	-1	somatic	0	0.00409820133382418	0.0103316521890313
5	49599783	49602294	204	gain	-	-1	germline	1	0.0832651328289365	0.270037963050831
5	50938146	50943168	1	loss	A	-1	germline	1	0.0143956136126718	0.0367860101978817
5	52909281	52914303	1	loss	A	-1	somatic	0	0.0145728172511797	0.0373382477123615
5	58026699	58036743	1	loss	A	-1	germline	1	0.000536697190982233	0.000679268535067168
5	84650832	84663387	1	loss	A	-1	germline	1	0.00450804238911234	0.0120602477857197
5	86418576	86423598	1	loss	A	-1	germline	1	0.0163877443030236	0.0429274255723707
5	86918265	86923287	1	loss	A	-1	germline	1	0.0143157055317853	0.0366594773801714
5	92342025	92347047	0	loss	-	-1	germline	1	0.0143114236422662	0.0366465813233868
5	97258563	97278651	2	neutral	AA	100	somatic	0	0.319982530008296	0.351484501683405
5	101954133	102328272	2	neutral	AA	36.3786	somatic	0	0.555431774206457	0.461466411424316
5	102413646	102456333	2	neutral	AA	54.5873	somatic	0	0.10933268802202	0.231166592957334
5	118536777	118541799	1	loss	A	-1	germline	1	0.0265188615941396	0.0751489253131448
5	128887119	128929806	2	neutral	AA	54.5679	somatic	0	0.706510069166244	0.667052508183526
5	132229260	132344766	2	neutral	AA	100	somatic	0	0.8640514993154	0.458546573482636
5	137517426	137522448	1	loss	A	-1	germline	1	0.0143807536348796	0.0368374955903921
5	145738440	145743462	1	loss	A	-1	somatic	0	0.0145289286054249	0.0372246094353108
5	178584831	178587342	5	gain	AAABB	5.96211	germline	1	0.0832756139469851	0.270056166549646
5	178680249	178687782	1	loss	A	-1	germline	1	0.00283986006999574	0.00538783612436999
6	296298	381672	4	gain	-	-1	germline	1	5.26650368683238e-22	0
6	32489829	32565159	0	loss	-	-1	germline	1	1.97508932215517e-09	7.57494067471498e-11
6	32575203	32577714	3	gain	-	-1	somatic	0	0.0834928750113402	0.27043328735481
6	32582736	32592780	1	loss	A	-1	germline	1	0.00270947869597421	0.0049887259466872
6	33968808	33976341	1	loss	A	-1	somatic	0	0.00289909073747677	0.00545113557683852
6	35786772	35799327	3	gain	-	-1	germline	1	0.000108022827174169	9.1202805676649e-05
6	54064341	54069363	1	loss	A	-1	somatic	0	0.0143522447908642	0.0367495672348011
6	60231357	60238890	3	gain	-	-1	germline	1	0.00270629794177891	0.00497027538703754
6	60238890	60241401	5	gain	-	-1	germline	1	0.0832786968321483	0.270061520690351
6	61373862	61381395	1	loss	A	-1	somatic	0	0.00272127185482388	0.00499471043399236
6	62212536	62220069	1	loss	A	-1	somatic	0	0.00285924005594656	0.00546555435042861
6	73881153	73893708	1	loss	A	-1	germline	1	0.000113679325818257	0.00010135046407822
6	78257826	78328134	1	loss	A	-1	germline	1	5.27107068053492e-20	0
6	99859959	99920223	2	neutral	AA	31.1884	somatic	0	0.82497127991768	0.506509969964487
6	101690478	101745720	2	neutral	AA	100	somatic	0	0.803409320759786	0.791683928434338
6	103289985	103315095	1	loss	A	-1	germline	1	2.05907771322242e-07	3.08531886705765e-08
6	107161947	107184546	2	neutral	AA	27.387	somatic	0	0.00307828286149467	0.00425927908373092
6	109657881	109662903	2	neutral	AA	100	germline	1	0.829218045732823	0.83088862024862
6	127277568	127458360	2	neutral	AA	74.7676	somatic	0	0.5943919774631	0.843391399792674
6	132661152	132668685	2	neutral	AA	100	somatic	0	0.312629207865914	0.706441465643734
6	132919785	132924807	2	neutral	AA	100	somatic	0	0.600537572628156	0.949091872179713
6	134230527	134260659	2	neutral	AA	33.466	somatic	0	0.0272662240843181	0.11438377925597
6	134426385	134446473	2	neutral	AA	100	germline	1	0.87351623811258	0.616121260054146
6	136133865	136686285	2	neutral	AA	16.3829	somatic	0	0.487949039803936	0.4686619708286
6	146079936	146140200	2	neutral	AA	100	somatic	0	0.142602507093778	0.34131989069357
6	150434010	150439032	2	neutral	AA	100	somatic	0	0.59284614376507	0.94739538713828
6	153419589	153547650	2	neutral	AA	0.308487	somatic	0	0.309300574800774	0.533197427550818
6	159267708	159370659	2	neutral	AA	21.7535	somatic	0	0.0926507776854815	0.244904767809788
6	164741688	164877282	2	neutral	AA	73.2405	somatic	0	0.0715213591831479	0.0271972098569684
6	165309174	165319218	1	loss	A	-1	germline	1	0.0145701480186007	0.0374268094601512
7	750789	768366	2	neutral	AA	7.09622	somatic	0	0.528165653530273	0.851114092740096
7	903960	906471	4	gain	AAAA	4.98798	germline	1	0.0832823964163792	0.270067945761479
7	1157571	1172637	2	neutral	AA	66.2798	somatic	0	0.0605696653265611	0.064986945885452
7	8384229	8389251	2	neutral	AA	100	somatic	0	0.159365458775469	0.38554560050294
7	15043401	15076044	2	neutral	AA	100	somatic	0	0.346418885983115	0.55007918986989
7	21225483	21263148	2	neutral	AA	100	somatic	0	0.519454787027507	0.791852377549692
7	21762837	21815568	2	neutral	AA	54.5728	somatic	0	0.180596892678288	0.298856378345075
7	23573268	23641065	2	neutral	AA	54.5873	somatic	0	0.000194926073111723	3.13871015982237e-05
7	24994494	25029648	2	neutral	AA	100	somatic	0	0.993347987803482	0.98588395082457
7	29511783	29549448	2	neutral	AA	100	somatic	0	0.853653544287635	0.971989373974098
7	33624801	33742818	2	neutral	AA	100	somatic	0	0.167306731138885	0.157980419809773
7	36085581	36283950	2	neutral	AA	33.156	somatic	0	0.182937565396128	0.492987975192904
7	41998986	42066783	2	neutral	AA	93.0722	somatic	0	0.171248303055727	0.392203126434515
7	43942500	43947522	2	neutral	AA	100	somatic	0	0.24015661889607	0.527888715352511
7	49524453	49702734	2	neutral	AA	18.6385	somatic	0	0.586215167883042	0.787640072707817
7	50390748	50521320	2	neutral	AA	100	somatic	0	0.000468577038469755	0.000857896362876476
7	56366928	56369439	0	loss	-	-1	somatic	0	0.0832669823603501	0.270041175367894
7	57486834	57496878	3	gain	AAB	1.5291	germline	1	0.000533066318154244	0.000672235631315687
7	58061853	58066875	4	gain	AAAB	24.0601	somatic	0	0.0143123966997584	0.0366424788650533
7	61044921	61057476	3	gain	-	-1	germline	1	0.000107715697698663	9.10097621663608e-05
7	62297910	62358174	3	gain	AAB	0.417179	germline	1	3.47776322294644e-10	2.09525841121661e-10
7	62400861	62405883	5	gain	-	-1	germline	1	0.0143107425367445	0.0366383768085452
7	62438526	62456103	3	gain	AAB	2.41846	germline	1	5.54791215771803e-05	6.91997738395678e-05
7	62518878	62574120	2	neutral	AA	4.6577	somatic	0	0.39089479676349	0.771500745335549
7	62687115	62702181	1	loss	A	-1	germline	1	0.000108447857586308	9.14291238388598e-05
7	62702181	62923149	2	neutral	AA	4.36091	somatic	0	0.056580786486377	0.105665821942199
7	64906839	64929438	2	neutral	AA	31.6352	germline	1	0.0777794674500672	0.357712547285756
7	65225736	65230758	1	loss	A	-1	somatic	0	0.0144379212007242	0.037027209315926
7	67975281	67997880	2	neutral	AA	36.9809	somatic	0	0.00592214107324443	0.0412180818516572
7	68572899	68587965	2	neutral	AA	100	somatic	0	0.575573604640732	0.43762667451519
7	74297979	74338155	2	neutral	AA	70.3031	somatic	0	0.000139872529549571	0.00105436527847469
7	74413485	74418507	1	loss	A	-1	somatic	0	0.0143490260382907	0.0367595565159913
7	76379598	76417263	2	neutral	AA	48.5451	somatic	0	0.00537803668872027	0.0312435189956018
7	97672878	97677900	2	neutral	AA	54.5678	somatic	0	0.67992206354127	0.930967827402878
7	100949733	100957266	3	gain	AAB	4.81343	germline	1	0.00270292545539009	0.00496324606156284
7	100957266	100959777	12	gain	AAAAAAAABBBB	13.8418	germline	1	0.0832682153997812	0.270043316928089
7	100959777	100972332	4	gain	AABB	0.316387	germline	1	0.000107700636691776	9.10279572224892e-05
7	101419290	101429334	2	neutral	AA	36.3788	somatic	0	0.241034149845587	0.507187543350462
7	101652813	101687967	2	neutral	AA	100	somatic	0	0.00203353096806324	0.00444222697303875
7	109801008	109813563	1	loss	A	-1	germline	1	0.000108545051364617	9.17861068946424e-05
7	112156326	112209057	2	neutral	AA	36.4352	somatic	0	0.170707489242404	0.302337837908644
7	113472090	113477112	2	neutral	AA	100	germline	1	0.029111652411271	0.0637316664273663
7	117861318	117916560	2	neutral	AA	100	somatic	0	0.560049531868921	0.87020388810981
7	125497269	125627841	2	neutral	AA	85.4326	somatic	0	0.567760558988957	0.866235258223066
7	131056623	131069178	2	neutral	AA	36.3786	somatic	0	0.338737771137454	0.522538326284902
7	131518647	131566356	2	neutral	AA	88.5999	somatic	0	0.0978959281236807	0.265417405054124
7	134099955	134115021	1	loss	A	-1	germline	1	2.26323762054968e-05	1.29657898627622e-05
7	143847657	143850168	4	gain	AABB	100	germline	1	0.0832799300120997	0.27006366236833
7	143875278	143897877	2	neutral	AA	100	somatic	0	0.661252878365727	0.926808291513113
7	152400123	152402634	4	gain	AAAB	10.6828	germline	1	0.0832885626859483	0.27007865446131
7	152402634	152407656	9	gain	AAAAAAABB	3.68596	germline	1	0.0143076292756256	0.0366339821938655
7	154599759	154609803	1	loss	A	-1	germline	1	0.0143293372450127	0.0367005367072513
7	158150313	158152824	4	gain	AABB	4.72755	somatic	0	0.0832873294024488	0.270076512696548
8	6111774	6116796	1	loss	A	-1	germline	1	0.0143886707541407	0.0368802026562344
8	25115022	25132599	1	loss	A	-1	germline	1	4.61741113759727e-06	1.67541366358215e-06
8	36211131	36221175	1	loss	A	-1	germline	1	0.000548142113702592	0.000698116540344351
8	39374991	39528162	1	loss	A	-1	germline	1	2.19652985838209e-38	0
8	40916745	40919256	0	loss	-	-1	germline	1	0.0832663658461811	0.270040104592442
8	43236909	43239420	5	gain	-	-1	germline	1	0.0832756139469851	0.270056166549646
8	43239420	43241931	9	gain	-	-1	germline	1	0.0832694484540034	0.270045458500688
8	43774263	43776774	3	gain	-	-1	germline	1	0.0833064469591196	0.270109711443553
8	43776774	43779285	6	gain	-	-1	germline	1	0.0832737642602628	0.270052954102415
8	43779285	43781796	4	gain	-	-1	germline	1	0.0832811632068433	0.270065804058705
8	50117049	50127093	1	loss	A	-1	germline	1	0.000551374453650971	0.000700369839033765
8	80221428	80429841	2	neutral	AA	20.2683	somatic	0	1.0425679607757e-06	3.79998171455842e-05
8	88181298	88665921	2	neutral	AA	30.654	somatic	0	0.750714368366493	0.958194984983484
8	97810983	97821027	2	neutral	AA	54.5678	somatic	0	0.132008609240029	0.0516094137435748
8	119141928	119149461	1	loss	A	-1	germline	1	0.00274048639575136	0.00501955628629591
8	126300789	126313344	2	neutral	AA	100	somatic	0	0.496785625301882	0.474024599258864
8	144123867	144126378	5	gain	AAAAB	22.8286	germline	1	0.0832756139469851	0.270056166549646
8	145050426	145070514	2	neutral	AA	100	germline	1	0.582270258353298	0.257767394420347
9	8758368	8775945	2	neutral	AA	100	somatic	0	0.0727277463822356	0.149513667752495
9	9544311	9694971	2	neutral	AA	54.5686	somatic	0	0.620623473367337	0.802710020123238
9	22496049	22498560	0	loss	-	-1	germline	1	0.0832675988782168	0.270042246146445
9	23362344	23364855	0	loss	-	-1	germline	1	0.0832669823603501	0.270041175367894
9	29092446	29097468	1	loss	A	-1	germline	1	0.0143603432567287	0.0367533863853943
9	33785505	33803082	2	neutral	AA	1.7248	somatic	0	2.87861935554002e-05	2.2942599906095e-05
9	36535050	36540072	2	neutral	AA	100	somatic	0	0.0873649209168366	0.13695799149855
9	40911723	40924278	5	gain	AAABB	2.47207	germline	1	0.00270085062470035	0.00495902094449463
9	40924278	40929300	6	gain	AAAABB	1.03111	germline	1	0.0143086993917406	0.036635447014179
9	69122808	69127830	1	loss	A	-1	germline	1	0.0143402508581978	0.0366940818640361
9	69989103	70004169	2	neutral	AA	100	somatic	0	0.189030542713369	0.336681499048682
9	81250938	81273537	2	neutral	AA	100	somatic	0	0.00502451558708135	0.0342860241529316
9	81351378	81356400	1	loss	A	-1	germline	1	0.0143450278690436	0.0367466296629094
9	83799603	84028104	2	neutral	AA	45.0496	somatic	0	0.00479704515932618	0.0191541000931429
9	86237784	86411043	2	neutral	AA	25.4327	somatic	0	0.024972816649594	0.066110234627813
9	90729963	90734985	2	neutral	AA	100	somatic	0	0.129402166195132	0.152553555563526
9	91691676	91714275	2	neutral	AA	13.8737	somatic	0	0.114142715703225	0.118762695776018
9	92462553	92507751	2	neutral	AA	100	somatic	0	0.990135389118194	0.926278596131396
9	93617613	93677877	2	neutral	AA	87.9267	somatic	0	0.0154937837892515	0.00940812494290033
9	100334538	100362159	2	neutral	AA	100	germline	1	0.0125568831290878	0.0259933041638529
9	101951622	101961666	1	loss	A	-1	germline	1	0.000535886429262421	0.000676797587225275
9	110263032	110268054	1	loss	A	-1	somatic	0	0.0143613192475183	0.0367480984231759
9	112864428	112889538	2	neutral	AA	12.867	somatic	0	0.659631716237625	0.891382947642878
9	114288165	114318297	2	neutral	AA	27.7395	somatic	0	0.242507259408411	0.461842311321637
9	120580731	120623418	2	neutral	AA	24.7949	somatic	0	0.805421171001845	0.545019177119926
9	121286322	121557510	2	neutral	AA	33.5947	somatic	0	0.445547138916088	0.840652532490608
9	127937961	127995714	2	neutral	AA	100	somatic	0	0.555828411990829	0.749868501728068
9	129426984	129442050	3	gain	AAB	0.258015	germline	1	2.25340041388603e-05	1.29884659273438e-05
9	131388075	131400630	2	neutral	AA	27.2865	somatic	0	0.0941723871782977	0.128707022746466
9	133226127	133236171	2	neutral	AA	54.5678	somatic	0	0.699204137876569	0.534410970909386
9	135395631	135418230	2	neutral	AA	36.3787	germline	1	0.215645659349401	0.363617372223081
9	137356722	137361744	1	loss	A	-1	germline	1	0.0163109985579713	0.0427280013010224
10	38486097	38496141	3	gain	-	-1	germline	1	0.000533639534032715	0.000673860812177796
10	38513718	38526273	3	gain	-	-1	somatic	0	0.00012936273204081	0.000153332437704767
10	38526273	38528784	15	gain	-	-1	germline	1	0.0832675988782168	0.270042246146439
10	38579004	38581515	4	gain	-	-1	germline	1	0.0832817798097622	0.270066874908542
10	38581515	38594070	1	loss	A	-1	germline	1	0.000138672277914617	0.000189860508421402
10	41707710	41710221	1	loss	A	-1	somatic	0	0.0834607507577321	0.270377552148371
10	41855859	41898546	23	gain	AAAAAAAAAAAAAAABBBBBBBB	29.6643	germline	1	9.63642117313939e-07	2.25142357090924e-07
10	42300306	42320394	3	gain	AAB	54.2362	somatic	0	2.63129163347578e-06	1.78293939223639e-06
10	42320394	42322905	2	neutral	AA	36.2296	somatic	0	0.120557653799687	0.329789669677408
10	46516275	46561473	3	gain	AAB	0.542315	germline	1	4.29736630200253e-12	2.56461518688411e-14
10	49795641	49803174	1	loss	A	-1	germline	1	0.0027085898735108	0.00496961972545251
10	54589140	54797553	2	neutral	AA	69.8204	somatic	0	0.872659222226094	0.970584387775988
10	57943836	57966435	2	neutral	AA	100	germline	1	0.566973534625496	0.44835965469181
10	60216291	60276555	2	neutral	AA	47.4203	somatic	0	0.198767729723898	0.117797499650459
10	67724181	67729203	1	loss	A	-1	germline	1	0.0144082846051447	0.0369285580085033
10	69522057	69532101	1	loss	A	-1	germline	1	0.000537021815568617	0.000676505533619864
10	71372664	71430417	2	neutral	AA	22.1427	germline	1	0.729388072504736	0.774247442734569
10	99269874	99289962	2	neutral	AA	100	somatic	0	0.929713785925754	0.989261774656029
10	104181390	104203989	2	neutral	AA	27.2839	somatic	0	0.962618921013624	0.591523468487733
10	106270542	106273053	0	loss	-	-1	germline	1	0.0832663658461811	0.270040104592442
10	110682369	110765232	2	neutral	AA	73.3137	somatic	0	0.83461532722333	0.314330019596648
10	111387960	111824874	2	neutral	AA	100	somatic	0	0.0281110492245851	0.058469895791459
10	112907115	112927203	1	loss	A	-1	germline	1	9.96344567721074e-07	2.54451089198859e-07
10	118180215	118212858	2	neutral	AA	16.6862	somatic	0	0.315408463408337	0.170761013331605
10	123021423	123101775	2	neutral	AA	17.8126	somatic	0	0.12318749644635	0.347063976620341
11	4949181	4954203	1	loss	A	-1	germline	1	0.0143701057977898	0.0367454546916731
11	17936073	18074178	2	neutral	AA	45.7057	somatic	0	0.515459372491744	0.879791064144048
11	18074178	18079200	1	loss	A	-1	germline	1	0.0148301255578296	0.0382096662515814
11	18079200	18134442	2	neutral	AA	100	somatic	0	0.261090036256909	0.484248823065288
11	21097422	21293280	2	neutral	AA	30.5689	somatic	0	0.0225504296025563	0.0685158304327177
11	22280103	22300191	2	neutral	AA	100	somatic	0	0.0844157439514007	0.175282086664185
11	22506093	22511115	2	neutral	AA	100	somatic	0	0.0535804116619485	0.128851464358128
11	25732728	25752816	2	neutral	AA	100	somatic	0	0.898142491017186	0.98988497253175
11	26546292	26553825	2	neutral	AA	36.3786	somatic	0	0.711823075406835	0.971927442394858
11	28984473	28992006	1	loss	A	-1	somatic	0	0.0027865753531819	0.00519822598885555
11	34194798	34199820	2	neutral	AA	54.5678	somatic	0	0.458096274388347	0.412662362318052
11	38503674	38548872	2	neutral	AA	100	somatic	0	0.445548923191968	0.783517952055732
11	46074339	46101960	2	neutral	AA	100	somatic	0	0.919023050486526	0.916820194304853
11	46950678	46965744	2	neutral	AA	54.5693	somatic	0	0.0816293330664545	0.206304782061394
11	48713400	48715911	1	loss	A	-1	germline	1	0.0832737642602628	0.270052954102421
11	48806307	48941901	2	neutral	AA	2.40722	somatic	0	0.606896653434735	0.86526599517848
11	50729733	50789997	2	neutral	AA	3.45718	somatic	0	0.519616123047705	0.797642825974812
11	54757377	54777465	1	loss	A	-1	germline	1	4.63896353622655e-06	1.67846368848146e-06
11	55116450	55123983	1	loss	A	-1	germline	1	0.00278070749879345	0.00519512136133082
11	55598562	55683936	1	loss	A	-1	germline	1	8.88886787418553e-22	0
11	62672049	62687115	2	neutral	AA	100	somatic	0	0.00325927306003641	0.0035930966426424
11	63847197	63862263	2	neutral	AA	54.5678	somatic	0	0.606253138821383	0.992882568573767
11	71450505	71485659	2	neutral	AA	36.3915	somatic	0	0.36312501487184	0.459037469182774
11	78775092	78790158	2	neutral	AA	72.052	somatic	0	0.0904423223191178	0.243197268923245
11	80389665	80394687	2	neutral	AA	100	somatic	0	0.929349657438943	0.882527358196799
11	84203874	84239028	2	neutral	AA	100	somatic	0	0.151373899814323	0.32125481766386
11	93286161	93296205	1	loss	A	-1	germline	1	0.000534103331893758	0.00067311772339651
11	95259807	95332626	2	neutral	AA	100	somatic	0	0.907778153809457	0.709440778503705
11	104397336	104402358	1	loss	A	-1	germline	1	0.0143606360478225	0.0367463359170189
11	107264898	107503443	2	neutral	AA	100	somatic	0	0.266964672415893	0.174747796468093
11	110177658	110185191	2	neutral	AA	100	somatic	0	0.695624324094086	0.62141758354426
11	120068487	120096108	2	neutral	AA	54.5682	somatic	0	0.176203314329157	0.324410981417731
11	120824298	120851919	2	neutral	AA	54.5704	germline	1	0.458172159145725	0.128237291394574
11	124184016	124344720	2	neutral	AA	100	germline	1	0.726363256086984	0.836483919787197
11	124781634	124826832	2	neutral	AA	100	somatic	0	0.340375264510158	0.398575190850119
11	131340366	131342877	3	gain	AAB	100	germline	1	0.0832891793332454	0.27007972534834
12	2254878	2257389	6	gain	-	-1	germline	1	0.0832743808188056	0.270054024915059
12	30084291	30091824	1	loss	A	-1	germline	1	0.00277834168885183	0.00519245274021618
12	33233085	33240618	1	loss	A	-1	germline	1	0.00271888094096995	0.00499034111023122
12	37597203	37602225	1	loss	A	-1	germline	1	0.0143378141483939	0.036726953229673
12	37604736	37614780	2	neutral	AA	100	germline	1	0.922360038882848	0.69202023571538
12	37614780	37624824	1	loss	A	-1	germline	1	0.0143753800035902	0.0368369068300088
12	40201110	40218687	2	neutral	AA	100	somatic	0	0.0725125192383698	0.141912265465636
12	45514386	45516897	1	loss	A	-1	germline	1	0.0832737642602628	0.270052954102421
12	47859660	48314151	2	neutral	AA	8.50811	somatic	0	0.417270663584697	0.222634556997826
12	48314151	48316662	0	loss	-	-1	germline	1	0.0832675988782168	0.270042246146445
12	49609827	49742910	2	neutral	AA	12.1553	somatic	0	0.552323590872742	0.307799752106739
12	50112027	50488677	2	neutral	AA	100	somatic	0	2.11077907551827e-21	6.66133814775094e-16
12	50938146	51196779	2	neutral	AA	25.8449	somatic	0	5.65558031160706e-12	2.04121830549298e-10
12	53052408	53110161	2	neutral	AA	54.5678	somatic	0	0.779763974752066	0.593290381365508
12	53559630	53665092	2	neutral	AA	54.5679	somatic	0	4.23851907510583e-09	3.497955030074e-07
12	57544587	57881061	2	neutral	AA	85.9688	somatic	0	0.165945282739268	0.532085540504828
12	65393973	65426616	2	neutral	AA	54.5678	somatic	0	0.669408886010265	0.587111830880118
12	71962749	71965260	1	loss	A	-1	germline	1	0.0832836296407076	0.270070087476655
12	79761915	79769448	3	gain	AAB	49.3096	germline	1	0.00270803893738581	0.00497510588273897
12	90092169	90097191	1	loss	A	-1	germline	1	0.0143250517590177	0.0366873346808587
12	94880646	94918311	2	neutral	AA	57.1527	somatic	0	0.38763943844775	0.199802780807355
12	104203989	104246676	2	neutral	AA	100	somatic	0	1.40793668161576e-05	0.000159478507271937
12	114195258	114200280	1	loss	A	-1	germline	1	0.0143883774589621	0.0368321970432698
12	115194636	115212213	2	neutral	AA	54.5679	somatic	0	0.148726366204317	0.480147156875832
12	117610218	117683037	2	neutral	AA	54.5681	somatic	0	0.456318040761023	0.496576972914365
12	122795433	122853186	2	neutral	AA	75.9895	somatic	0	0.00791450873909757	0.0121677331929964
12	125560044	125783523	2	neutral	AA	67.1753	somatic	0	0.647130622282749	0.960309915100489
12	128083599	128086110	1	loss	A	-1	germline	1	0.0832737642602628	0.270052954102421
12	128691261	128718882	2	neutral	AA	36.3786	germline	1	0.0500059440505462	0.0596092308229116
12	132595866	132907230	2	neutral	AA	17.2188	somatic	0	0.000126404862789297	0.00178704906587313
13	18212283	18214794	6	gain	AAAABB	5.96229	germline	1	0.0832743808188056	0.270054024915059
13	20986938	21004515	2	neutral	AA	100	somatic	0	0.929453616883224	0.861819104776864
13	21376143	21378654	4	gain	AAAB	24.1574	germline	1	0.0832836296407076	0.270070087476649
13	22018959	22023981	0	loss	-	-1	germline	1	0.0143078238369407	0.0366354470141805
13	39359925	39362436	1	loss	A	-1	germline	1	0.0833391400476043	0.270166477491142
13	43706466	43960077	2	neutral	AA	58.4759	somatic	0	0.630778330019297	0.823780816907136
13	50496210	50501232	1	loss	A	-1	germline	1	0.0143786039697996	0.0367915969926038
13	52376949	52713423	2	neutral	AA	14.4923	somatic	0	0.131650406409169	0.322143773024074
13	59583519	59756778	2	neutral	AA	32.4126	somatic	0	0.393867797858327	0.643796255678562
13	63028611	63043677	3	gain	AAB	0.750158	germline	1	0.000107849965324133	9.10953089823252e-05
13	63058743	63063765	3	gain	AAB	1.13948	germline	1	0.0143199885513543	0.0366638746705933
13	63063765	63068787	4	gain	AAAB	5.98132	germline	1	0.0143110344356095	0.0366392557868286
13	63473058	63510723	2	neutral	AA	54.5678	germline	1	0.0780846252738548	0.0823335765810277
13	63648828	63663894	1	loss	A	-1	germline	1	2.32989541599275e-05	1.42122737381012e-05
13	68479992	68492547	2	neutral	AA	100	somatic	0	0.916961423941219	0.973955802164301
13	71902485	71907507	1	loss	A	-1	germline	1	0.0145013420823031	0.0371026820182675
13	72319311	72324333	1	loss	A	-1	germline	1	0.0143722543422379	0.0367345877657754
13	73210716	73253403	2	neutral	AA	100	somatic	0	0.699372015456518	0.805333901554888
13	82589301	82599345	1	loss	A	-1	germline	1	0.00060056625320517	0.00085016797841253
13	102541707	102654702	2	neutral	AA	54.568	somatic	0	0.0351736090977922	0.0699493033977967
13	109215945	109220967	1	loss	A	-1	germline	1	0.0157559110676073	0.0410069644760463
13	113261166	113263677	3	gain	AAA	22.3771	germline	1	0.0832990461929751	0.270096859962343
13	114152571	114157593	1	loss	A	-1	germline	1	0.0167213272439607	0.0439539022304094
14	24479739	24502338	2	neutral	AA	100	somatic	0	0.679970932090176	0.830148042194829
14	25238061	25338501	2	neutral	AA	100	somatic	0	0.441677041821727	0.448778993244987
14	27540648	27613467	2	neutral	AA	100	somatic	0	0.673135340084944	0.481562253541904
14	34347969	34350480	0	loss	-	-1	somatic	0	0.0832700649866612	0.270046529291643
14	37524384	37584648	2	neutral	AA	54.5693	germline	1	0.131257306452352	0.235661977406613
14	41140224	41200488	1	loss	A	-1	germline	1	2.14825854737048e-15	0
14	48464811	48497454	2	neutral	AA	100	somatic	0	0.0879891789069758	0.198027548889549
14	49690179	49717800	2	neutral	AA	36.3787	somatic	0	0.000965091518018789	0.00420605062608947
14	50762376	50792508	2	neutral	AA	100	somatic	0	0.590114761882814	0.74843243333564
14	61727913	61742979	2	neutral	AA	54.5679	somatic	0	0.42938138350825	0.669600935570205
14	62842797	62857863	2	neutral	AA	100	somatic	0	0.176003658869148	0.425572071117809
14	67686516	67696560	2	neutral	AA	100	germline	1	0.0394848473457374	0.121163124126898
14	71950194	71972793	2	neutral	AA	55.0709	somatic	0	0.0643303328503942	0.188650957904044
14	72788868	72806445	2	neutral	AA	9.93408	somatic	0	0.817020631091273	0.917835422167048
14	73060056	73065078	1	loss	A	-1	somatic	0	0.0143242727012217	0.036660943092374
14	73727982	73780713	2	neutral	AA	36.3786	somatic	0	0.879383257906849	0.690762777499127
14	75480660	75490704	2	neutral	AA	100	somatic	0	0.118971804345687	0.121863136040658
14	75616254	75623787	2	neutral	AA	100	somatic	0	0.719662784456606	0.862641624956185
14	76959639	77039991	2	neutral	AA	27.564	somatic	0	0.186515451263171	0.383166153585355
14	78345711	78395931	2	neutral	AA	100	somatic	0	0.766696997190327	0.618944863880648
14	79638876	79648920	1	loss	A	-1	germline	1	0.000535982970738056	0.000675403285862686
14	86900688	86915754	2	neutral	AA	100	somatic	0	0.00222683899595249	0.00180543019693602
14	87232140	87274827	2	neutral	AA	100	somatic	0	0.019506684246216	0.0939547925124283
14	88151166	88163721	2	neutral	AA	100	germline	1	0.0135826866414436	0.0314872672360558
14	88520283	88640811	2	neutral	AA	62.2447	somatic	0	0.0167116068362861	0.0372333501042535
14	91380312	91515906	2	neutral	AA	31.7026	somatic	0	0.186765046515237	0.101747969634685
14	92758851	92763873	2	neutral	AA	12.1262	somatic	0	0.227701809588226	0.50320775083554
14	94571793	94591881	2	neutral	AA	59.9827	somatic	0	0.0431030775243804	0.0831687148010409
14	95558616	95583726	2	neutral	AA	100	germline	1	0.94689812494869	0.956371576564216
14	96136146	96156234	2	neutral	AA	36.5645	germline	1	0.470773756060398	0.290550816312359
14	96691077	96711165	2	neutral	AA	36.7489	somatic	0	0.364534271352483	0.693868084845668
14	98514063	98521596	2	neutral	AA	46.877	germline	1	0.226955170784248	0.422012213563185
14	99400446	99423045	2	neutral	AA	65.9674	somatic	0	0.0891341095197613	0.310732711591178
14	99927756	99930267	4	gain	AAAA	12.4386	somatic	0	0.0832811632068433	0.270065804058705
14	101710566	101725632	2	neutral	AA	27.1864	somatic	0	0.000175279535840999	0.00135214656217175
15	0	17024580	7	gain	-	-1	germline	1	NA	NA
15	17024580	17027091	5	gain	-	-1	germline	1	0.0832799300120997	0.27006366236833
15	17027091	17079822	7	gain	-	-1	germline	1	NA	NA
15	17079822	17082333	11	gain	-	-1	germline	1	0.0832688319250434	0.270044387712839
15	17082333	20339100	7	gain	-	-1	somatic	0	0.0860569231887304	0.21539641224946
15	20339100	20341611	18	gain	-	-1	germline	1	0.0832675988782168	0.270042246146439
15	20341611	20379276	7	gain	-	-1	somatic	0	4.59566693492006e-06	1.66387223565767e-06
15	20379276	20381787	3	gain	-	-1	germline	1	0.0832891793332454	0.27007972534834
15	20381787	20673063	7	gain	-	-1	germline	1	9.14056478829250e-11	1.38455913401003e-12
15	22224861	22252482	4	gain	AAAB	1.48554	germline	1	4.59986967820888e-06	1.66499029852218e-06
15	22270059	22272570	4	gain	AABB	21.2308	germline	1	0.0832867127662464	0.270075441818817
15	23954940	23967495	2	neutral	AA	54.5678	germline	1	0.770562354145403	0.983758333006728
15	24871455	24873966	0	loss	-	-1	germline	1	0.0832682153997812	0.270043316928095
15	25526826	25529337	4	gain	AAAA	4.14797	somatic	0	0.0832885626859483	0.27007865446131
15	26985717	27015849	2	neutral	AA	100	somatic	0	0.907414852440995	0.977761183896827
15	40806261	40833882	2	neutral	AA	36.3786	germline	1	0.00867628747471077	0.0086613992266209
15	46091916	46227510	2	neutral	AA	100	somatic	0	0.331337282990072	0.721494246464473
15	58302909	58322997	2	neutral	AA	100	germline	1	0.0223696586157511	0.0407641568468784
15	61414038	61419060	2	neutral	AA	100	somatic	0	0.374594866952666	0.686632600071236
15	64015434	64030500	2	neutral	AA	54.5681	germline	1	0.887769316873767	0.640151272557934
15	71415351	71420373	1	loss	A	-1	germline	1	0.0144811741034147	0.0370482097841149
15	72703494	72733626	2	neutral	AA	100	somatic	0	0.0712015291076347	0.24794609062574
15	74534013	74662074	2	neutral	AA	27.2879	somatic	0	0.874672723336592	0.812099572948433
15	74760003	74830311	2	neutral	AA	100	somatic	0	0.538925623303034	0.551394668165152
15	76590522	76603077	1	loss	A	-1	germline	1	0.000108895906580501	9.22088657278053e-05
15	77037480	77039991	0	loss	-	-1	germline	1	0.0832700649866612	0.270046529291643
15	78955884	78968439	2	neutral	AA	36.3815	somatic	0	0.0609814713331874	0.194376316775324
15	81911331	81938952	2	neutral	AA	36.3786	somatic	0	0.790083862505489	0.905146836043592
15	84633255	84736206	2	neutral	AA	54.5678	somatic	0	1.90928630483527e-05	1.63526631979938e-06
15	89190720	89203275	2	neutral	AA	100	somatic	0	0.358209724877237	0.272376641876021
15	89831025	89836047	2	neutral	AA	100	somatic	0	0.342755916635802	0.664979689359083
15	91294938	91304982	2	neutral	AA	18.1953	somatic	0	0.958107884858165	0.979423751844471
15	97271118	97288695	1	loss	A	-1	germline	1	4.64160625409443e-06	1.68424993218785e-06
15	98057061	98062083	2	neutral	AA	100	somatic	0	0.361567084853114	0.725486597136819
16	846207	848718	4	gain	AABB	11.067	germline	1	0.0832873294024488	0.270076512696548
16	1024488	1026999	4	gain	AABB	9.69802	germline	1	0.0832873294024488	0.270076512696548
16	13157640	13170195	2	neutral	AA	100	somatic	0	0.966934023482598	0.622081130215622
16	19281969	19317123	2	neutral	AA	54.5701	germline	1	0.806343166730347	0.878994184378871
16	21556935	21584556	4	gain	AABB	6.06336	germline	1	9.24165162087975e-09	5.60389734616251e-10
16	22614066	22626621	4	gain	AABB	13.5084	germline	1	0.00010763220260854	9.08752260926349e-05
16	22626621	22699440	4	gain	AAAB	1.75076	germline	1	4.98068275882261e-20	0
16	22958073	22988205	2	neutral	AA	100	germline	1	0.541248213893948	0.7655901338864
16	23533092	23553180	2	neutral	AA	54.568	somatic	0	0.259194640599983	0.489464202884447
16	27239328	27276993	2	neutral	AA	100	somatic	0	0.0969188558202543	0.0269700878511376
16	27944919	27972540	2	neutral	AA	21.8334	somatic	0	0.0491286919181311	0.110376902402708
16	29695086	29805570	2	neutral	AA	21.0006	somatic	0	0.007302150153055	0.030988990758414
16	34061715	34064226	23	gain	AAAAAAAAAAAAAAABBBBBBBB	29.9617	germline	1	0.0832675988782168	0.270042246146439
16	34069248	34084314	2	neutral	AA	7.60622	germline	1	0.00020553474343683	0.000504968497978098
16	34084314	34086825	11	gain	AAAAAAAAAAA	100	germline	1	0.0832688319250434	0.270044387712839
16	34094358	34096869	3	gain	AAB	4.32142	germline	1	0.0832891793332454	0.27007972534834
16	34096869	34099380	10	gain	AAAAAAABBB	4.0722	germline	1	0.0832688319250434	0.270044387712839
16	34192287	34245018	2	neutral	AA	2.05891	germline	1	0.159477098319828	0.340049518739775
16	34247529	34257573	1	loss	A	-1	germline	1	0.000544986966299198	0.000691011126820684
16	34759773	34953120	3	gain	AAA	3.84019	somatic	0	2.52363866064048e-10	1.12236775429153e-10
16	34955631	34958142	2	neutral	AA	7.55776	germline	1	0.12600655721085	0.337825218636574
16	35256951	35277039	2	neutral	AA	36.3786	somatic	0	0.55613180234135	0.919758750509593
16	35992674	36088092	2	neutral	AA	9.39948	germline	1	0.0100126216509089	0.0136520146309944
16	36123246	36125757	6	gain	-	-1	germline	1	0.0832743808188056	0.270054024915059
16	46805040	46832661	2	neutral	AA	100	somatic	0	0.10734798190924	0.022168937004639
16	62092008	62104563	2	neutral	AA	100	somatic	0	0.574335689141181	0.635394198565985
16	63904950	63940104	2	neutral	AA	58.5863	germline	1	0.921575566567417	0.778862871027769
16	65321154	65323665	0	loss	-	-1	germline	1	0.0832675988782168	0.270042246146445
16	70149807	70162362	4	gain	AABB	3.90143	germline	1	0.00010763220260854	9.08752260926349e-05
16	74109654	74112165	1	loss	A	-1	germline	1	0.0832879460423494	0.270077583577385
16	77070123	77125365	2	neutral	AA	54.6578	somatic	0	0.954916721823635	0.827625150892871
16	80942085	80949618	1	loss	A	-1	germline	1	0.00271545849909189	0.00498418213263552
16	86039415	86044437	2	neutral	AA	100	somatic	0	0.098189753293917	0.301582237548543
16	87176898	87224607	2	neutral	AA	18.3452	somatic	0	0.294008616182876	0.655923344979436
16	89617590	89635167	2	neutral	AA	7.13252	somatic	0	0.0601647582476922	0.169671379474624
17	9489069	9494091	2	neutral	AA	100	somatic	0	0.632794769994312	0.904808746447868
17	19018314	19324656	2	neutral	AA	27.2983	somatic	0	0.0810805593353227	0.086137595282198
17	20120643	20233638	2	neutral	AA	36.3786	somatic	0	0.703995125188561	0.566194196311624
17	21290769	21303324	4	gain	AABB	0.291095	germline	1	0.000107629466098797	9.08734093321151e-05
17	21855744	21858255	6	gain	-	-1	germline	1	0.0832743808188056	0.270054024915059
17	21885876	21968739	1	loss	A	-1	germline	1	1.76510421947047e-17	0
17	21968739	21976272	6	gain	AAAABB	-1	germline	1	NA	NA
17	21976272	21978783	20	gain	-	-1	germline	1	0.0832675988782168	0.270042246146439
17	21978783	22154553	6	gain	AAAABB	0.497544	somatic	0	4.24386628244232e-10	1.02307051719208e-11
17	22157064	22159575	4	gain	AABB	7.13327	germline	1	0.0832811632068433	0.270065804058705
17	26782326	26784837	4	gain	-	-1	germline	1	0.0832873294024488	0.270076512696548
17	26784837	26804925	3	gain	-	-1	germline	1	3.47699805172915e-05	1.77139101747992e-05
17	26807436	26827524	4	gain	-	-1	germline	1	4.72763347195418e-06	1.88121683142306e-06
17	26827524	26877744	3	gain	-	-1	somatic	0	5.62053692409208e-11	6.40751895986114e-11
17	26877744	26880255	5	gain	-	-1	germline	1	0.0832799300120997	0.27006366236833
17	26938008	26940519	16	gain	AAAAAAAAAAABBBBB	3.94208	germline	1	0.0832675988782168	0.270042246146439
17	34360524	34403211	2	neutral	AA	100	germline	1	0.234529279246643	0.459757378536336
17	35432721	35495496	2	neutral	AA	49.8819	somatic	0	0.241489076070715	0.561943511691409
17	41632380	41644935	2	neutral	AA	7.8006	somatic	0	0.548697574591364	0.810709024613627
17	42024096	42049206	2	neutral	AA	100	germline	1	0.272426718626013	0.444340849677138
17	44108226	44118270	2	neutral	AA	70.2665	somatic	0	0.334575377983691	0.329371201824024
17	47799396	48005298	2	neutral	AA	21.7147	somatic	0	0.904320160135415	0.811463928554794
17	48035430	48424635	2	neutral	AA	23.5315	somatic	0	5.08216178080932e-05	0.000185443541524277
17	48675735	48700845	2	neutral	AA	36.3786	somatic	0	0.0318180833976339	0.231336790776743
17	58360662	58375728	2	neutral	AA	54.5678	somatic	0	0.126943464108077	0.393286329980904
18	3264300	3271833	2	neutral	AA	100	somatic	0	0.625805264549357	0.26905185334393
18	5305743	5308254	1	loss	A	-1	germline	1	0.0832965793892806	0.270092576234461
18	8499735	8539911	2	neutral	AA	54.5755	germline	1	0.0388565967895521	0.0606600688023453
18	10141929	10146951	2	neutral	AA	36.3791	germline	1	0.480784999583002	0.49251152746442
18	12085443	12090465	2	neutral	AA	5.93381	germline	1	0.0603980430292617	0.149846762683018
18	22229883	22242438	2	neutral	AA	5.40292	germline	1	0.746987239961217	0.921796345184852
18	24130710	24155820	2	neutral	AA	100	somatic	0	0.636770711584529	0.877537371805904
18	27867078	27922320	2	neutral	AA	100	somatic	0	0.818942029748616	0.834239471826632
18	28507383	28848879	2	neutral	AA	100	somatic	0	0.328457026295907	0.558268168925233
18	29441475	29451519	2	neutral	AA	100	germline	1	0.238257555079645	0.329272668775008
18	29594646	29597157	0	loss	-	-1	germline	1	0.0832719146068216	0.270049741683085
18	40680711	40685733	1	loss	A	-1	germline	1	0.014323785809078	0.0366588911096459
18	41283351	41285862	1	loss	A	-1	germline	1	0.0833274186889916	0.270146126397462
18	48404547	48412080	2	neutral	AA	54.5678	germline	1	0.312476410437868	0.469176567641766
18	51123960	51279642	2	neutral	AA	51.5662	somatic	0	0.460772474920317	0.644556608424833
18	53426547	53429058	1	loss	A	-1	germline	1	0.0833644380561523	0.270210396821587
18	56261466	56263977	1	loss	A	-1	somatic	0	0.0833403739525139	0.270168619776621
18	56690847	56695869	2	neutral	AA	100	germline	1	0.505775937831712	0.723095411093488
18	57022299	57024810	3	gain	AAB	20.2688	germline	1	0.0832904126389345	0.270081867131698
18	63515745	63545877	2	neutral	AA	100	germline	1	0.661130340752864	0.162282031341695
18	64655739	64660761	2	neutral	AA	100	somatic	0	0.549416450047517	0.909385379174144
18	65532078	65539611	3	gain	-	-1	germline	1	0.00270278354024998	0.00496282935414516
18	65539611	65647584	2	neutral	AA	100	somatic	0	0.690328764521909	0.954592044686758
18	66099564	66102075	0	loss	-	-1	germline	1	0.0832663658461811	0.270040104592442
18	71078877	71103987	2	neutral	AA	100	somatic	0	0.015691369097298	0.0868798921103622
18	71864820	71922573	2	neutral	AA	72.0642	somatic	0	0.920834280021338	0.962129509361825
18	74669607	74674629	2	neutral	AA	27.2843	somatic	0	0.109569678171229	0.307012141215827
18	76924485	76977216	2	neutral	AA	2.81662	germline	1	0.0644314951792352	0.08591574642086
18	77165541	77173074	2	neutral	AA	100	somatic	0	0.388511290238987	0.864944661154178
18	77554746	77557257	1	loss	A	-1	germline	1	0.0833144650568145	0.270123634385204
18	78403464	78405975	2	neutral	AA	54.5678	somatic	0	0.172681433717123	0.40156674372603
18	79342578	79387776	2	neutral	AA	11.6603	germline	1	0.0230252792703843	0.0589102616692165
19	1484001	1529199	1	loss	A	-1	germline	1	1.49152054767076e-11	1.24855681349345e-12
19	8886429	8966781	2	neutral	AA	1.18205	somatic	0	0.730999541224109	0.939059641849649
19	20409408	20527425	1	loss	A	-1	germline	1	6.56775100536424e-29	0
19	21499182	21564468	2	neutral	AA	0.992092	germline	1	0.0313471213813349	0.0710019970394914
19	21564468	21574512	3	gain	AAB	2.65415	germline	1	0.00270280127927014	0.00496229363458855
19	21574512	21597111	2	neutral	AA	5.52765	germline	1	0.0102301830707635	0.0246857769771065
19	22958073	22960584	0	loss	-	-1	germline	1	0.0832669823603501	0.270041175367894
19	24331590	24404409	4	gain	AABB	0.31844	germline	1	2.27153251235056e-19	0
19	24414453	24419475	3	gain	AAB	9.21801	germline	1	0.0143333315565906	0.0367014169901064
19	27244350	27337257	2	neutral	AA	1.33241	somatic	0	0.00249567162772907	0.018555969441781
19	27337257	27339768	4	gain	AAAB	11.2161	germline	1	0.0832873294024488	0.270076512696548
19	27339768	27344790	2	neutral	AA	22.4954	somatic	0	0.0423505175334588	0.128034364691342
19	27344790	27347301	5	gain	AAABB	4.38929	germline	1	0.0832799300120997	0.27006366236833
19	27347301	27379944	6	gain	AAAABB	0.149724	germline	1	9.22746522967107e-09	5.58470603095884e-10
19	27379944	27382455	2	neutral	AA	20.724	somatic	0	0.273735338114192	0.518460039324205
19	27382455	27400032	5	gain	AAABB	0.29567	germline	1	4.59707703438221e-06	1.6643380070791e-06
19	27400032	27470340	2	neutral	AA	26.4664	somatic	0	0.0016523030557953	0.0121416040359323
19	27470340	27472851	0	loss	-	-1	somatic	0	0.0832688319250434	0.270044387712845
19	27472851	29094957	2	neutral	AA	2.18633	somatic	0	0.000640631437623668	0.0128844242962143
19	29511783	29514294	0	loss	-	-1	germline	1	0.0832675988782168	0.270042246146445
19	29582091	29988873	2	neutral	AA	9.50392	germline	1	2.43915081014406e-06	5.11075164788544e-06
19	29988873	30132000	2	neutral	AA	27.284	germline	1	0.56336949576638	0.996770289459128
19	42109470	42197355	2	neutral	AA	21.9394	somatic	0	0.146801465221049	0.163457244099353
19	43960077	43987698	2	neutral	AA	100	somatic	0	0.433517863846806	0.718373651317623
19	45660024	45830772	2	neutral	AA	27.3104	somatic	0	8.23571888802108e-05	4.50773641761382e-05
19	46217466	46232532	3	gain	AAB	3.43233	germline	1	2.21433144851255e-05	1.23143948070892e-05
19	47415213	47470455	2	neutral	AA	100	somatic	0	0.000989783365141918	0.00526295128563237
19	48728466	48763620	2	neutral	AA	17.5673	somatic	0	0.000784463320665259	0.0010306806752608
19	49451634	49479255	2	neutral	AA	29.4517	somatic	0	0.149647971067492	0.0849418951813478
19	50491188	50528853	2	neutral	AA	37.0154	somatic	0	0.000309872925326725	0.00170767824007723
19	52444746	52454790	2	neutral	AA	66.5127	somatic	0	0.713720417279059	0.718923431227137
19	56098251	56123361	2	neutral	AA	52.857	somatic	0	0.121415748459341	0.137825393661459
20	60264	62775	7	gain	-	-1	germline	1	0.0832731477054179	0.27005188329287
20	65286	67797	4	gain	-	-1	germline	1	0.0832836296407076	0.270070087476649
20	28783593	28816236	8	gain	-	-1	somatic	0	1.15150148356849e-07	4.16614417408923e-08
20	28816236	28823769	10	gain	-	-1	germline	1	0.0143075319958432	0.0366339821938655
20	28836324	28838835	3	gain	-	-1	somatic	0	0.0833996187928309	0.270271464060304
20	28868967	28871478	5	gain	-	-1	germline	1	0.0832756139469851	0.270056166549646
20	30993273	31186620	3	gain	-	-1	somatic	0	2.64759260513159e-10	6.1700233811024e-10
20	31186620	31189131	8	gain	-	-1	germline	1	0.0832706815230169	0.270047600085685
20	31189131	31191642	4	gain	-	-1	germline	1	0.0832817798097622	0.270066874908542
20	31234329	31236840	4	gain	-	-1	germline	1	0.0832817798097622	0.270066874908542
20	31236840	31239351	3	gain	-	-1	germline	1	0.0833934458641246	0.270260749781216
20	31239351	31241862	50	gain	-	-1	germline	1	0.0832669823603501	0.270041175367888
20	34654311	34656822	0	loss	-	-1	somatic	0	0.0832669823603501	0.270041175367894
20	36735930	36740952	2	neutral	AA	54.5678	somatic	0	0.0715184109771491	0.194656559551736
20	37913589	37921122	2	neutral	AA	100	germline	1	0.485948271968721	0.842918606565204
20	43427745	43445322	2	neutral	AA	100	germline	1	0.51280244683494	0.598461418909289
20	43643691	43646202	0	loss	-	-1	germline	1	0.0832663658461811	0.270040104592442
20	44969499	45007164	2	neutral	AA	100	somatic	0	0.679070265784456	0.910685687355474
20	47495565	47505609	2	neutral	AA	36.5185	somatic	0	0.0130700349819524	0.043732243249879
20	57524499	57527010	1	loss	A	-1	somatic	0	0.0833231006303454	0.270138628908166
20	61044921	61047432	3	gain	AAB	17.0053	somatic	0	0.0832891793332454	0.27007972534834
20	62064387	62066898	1	loss	A	-1	somatic	0	0.0832780802477197	0.270060449856018
20	62496279	62498790	1	loss	A	-1	somatic	0	0.0832867127662464	0.270075441818823
21	0	8989380	7	gain	AAAAABB	-1	germline	1	2.20998250143537e-05	1.22931426347339e-05
21	8989380	10739547	7	gain	AAAAABB	0.176588	somatic	0	6.3606844192224e-28	0
21	10752102	10754613	15	gain	AAAAAAAAABBBBBB	4.63927	germline	1	0.0832675988782168	0.270042246146439
21	14631597	14671773	2	neutral	AA	36.3786	somatic	0	0.627053574091836	0.991751139278979
21	16969338	16974360	1	loss	A	-1	germline	1	0.0144771926250427	0.037128462291114
21	18880209	18912852	2	neutral	AA	100	somatic	0	0.604772047278664	0.929526951467311
21	19909719	19942362	2	neutral	AA	100	germline	1	0.17741993186433	0.564771575109926
21	24356700	24379299	2	neutral	AA	100	somatic	0	0.731912787126868	0.929567325508145
21	24647976	24698196	2	neutral	AA	54.869	somatic	0	0.555364506712792	0.530311147984568
21	30247506	30355479	2	neutral	AA	19.0917	germline	1	0.331706245606548	0.344446521692151
21	32298993	32439609	2	neutral	AA	35.5187	somatic	0	0.609011891080679	0.588447213493556
21	35799327	36075537	2	neutral	AA	32.5853	somatic	0	0.485416665906758	0.246012353223623
21	36632979	36648045	2	neutral	AA	73.8871	somatic	0	0.51973630914031	0.359848286793529
21	36929277	36951876	2	neutral	AA	54.5678	somatic	0	0.430783048202525	0.49553547052918
21	38548872	38571471	2	neutral	AA	100	somatic	0	0.141073591673747	0.11335097213442
21	39746619	39816927	2	neutral	AA	36.3804	germline	1	0.635384125919023	0.236781014346547
21	40286484	40299039	2	neutral	AA	54.5678	somatic	0	0.338905908293975	0.20026215887987
21	41805639	41808150	3	gain	AAA	12.8997	germline	1	0.0832891793332454	0.27007972534834
21	45795618	45798129	4	gain	AABB	16.3221	germline	1	0.0832885626859483	0.27007865446131
21	46011564	46044207	2	neutral	AA	17.4839	somatic	0	0.997099550594652	0.94148996413832
22	11211615	11214126	5	gain	-	-1	germline	1	0.0832774636669891	0.270059379024771
22	11625930	11630952	4	gain	AAAB	87.8439	germline	1	0.0143117155533861	0.0366401347835622
22	15934806	16567578	2	neutral	AA	9.24223	germline	1	0.0339649212926592	0.113104384745245
22	17875809	17878320	5	gain	AAABB	18.773	germline	1	0.083279313420275	0.270062591527791
22	25772904	25818102	2	neutral	AA	100	somatic	0	0.227002702516889	0.281626769200564
22	25941141	25948674	1	loss	A	-1	germline	1	0.00273836728425984	0.00504143456513928
22	27543159	27548181	2	neutral	AA	100	somatic	0	0.0644857312947363	0.126605158018775
22	30302748	30345435	2	neutral	AA	33.1052	somatic	0	0.584647562558023	0.6321007230409
22	36735930	36745974	2	neutral	AA	36.4038	somatic	0	0.91329826497429	0.872114261988771
22	37682577	37702665	2	neutral	AA	36.3851	somatic	0	0.044036331533748	0.119165088825381
22	37702665	37705176	1	loss	A	-1	somatic	0	0.0844101401385888	0.27202095954044
22	45589716	45735354	2	neutral	AA	7.45722	somatic	0	0.0311453148347039	0.0835391191037647
22	48439701	48482388	2	neutral	AA	100	somatic	0	0.689149095416624	0.568471484047677
22	49765509	49780575	2	neutral	AA	100	somatic	0	0.0587807965214273	0.0741035403469903
22	49783086	49860927	2	neutral	AA	27.2883	somatic	0	0.0232142976174202	0.128069946229281
X	5137506	5140017	0	loss	-	-1	germline	1	0.0832675988782168	0.270042246146445
X	15415029	15420051	2	neutral	AA	100	somatic	0	0.881091371360122	0.859748124116784
X	23392476	23432652	2	neutral	AA	54.5678	somatic	0	0.742803210777122	0.759227317178763
X	34543827	34561404	2	neutral	AA	54.5693	somatic	0	0.575567857531354	0.882951512819493
X	46209933	46250109	2	neutral	AA	100	somatic	0	0.00365997759181746	0.0153606768490502
X	53097606	53107650	2	neutral	AA	100	somatic	0	0.0405428242215373	0.188099275536324
X	53710290	53911170	2	neutral	AA	27.2842	somatic	0	0.000204083915573156	0.00305240615535118
X	62566587	62576631	3	gain	AAA	2.09436	somatic	0	0.0027036351332292	0.00496419865609998
X	62576631	62654472	2	neutral	AA	3.67072	somatic	0	0.697563030207381	0.791131199578327
X	68650740	68876730	2	neutral	AA	38.5659	somatic	0	7.17874156448756e-05	0.00297209263356213
X	70478748	70646985	2	neutral	AA	64.3706	somatic	0	0.308401085888256	0.222088673322043
X	84309336	84422331	2	neutral	AA	100	somatic	0	0.960661729388659	0.917131403714802
X	85964085	86041926	2	neutral	AA	100	somatic	0	0.364050530184633	0.723354751949568
X	99955377	99975465	2	neutral	AA	100	somatic	0	0.773506799823205	0.942929535102806
X	104005620	104050818	3	gain	AAB	2.83372	germline	1	9.18800880821704e-11	1.3944401189292e-12
X	108774009	108776520	0	loss	-	-1	germline	1	0.0832669823603501	0.270041175367894
X	114805431	114807942	1	loss	A	-1	germline	1	0.0832891793332454	0.270079725348346
X	115307631	115310142	0	loss	-	-1	germline	1	0.0832669823603501	0.270041175367894
X	120676149	120711303	2	neutral	AA	72.4649	somatic	0	0.0884793196054619	0.119589971506681
X	126737703	126775368	2	neutral	AA	48.7014	somatic	0	0.526488808810861	0.336345529025993
X	126775368	126780390	1	loss	A	-1	germline	1	0.0147392538158698	0.0379285122637054
X	127463382	127468404	1	loss	A	-1	germline	1	0.0143786039697996	0.0367851281402445
X	141788637	141793659	1	loss	A	-1	germline	1	0.015140492047608	0.0391512394000236
X	145339191	145344213	1	loss	A	-1	germline	1	0.0143602456608675	0.0367313576003055
X	148312215	148354902	2	neutral	AA	100	somatic	0	0.432935240368333	0.871003230558949
X	148427721	148430232	0	loss	-	-1	germline	1	0.0832682153997812	0.270043316928095
X	155164734	155177289	1	loss	A	-1	germline	1	0.000112764026263027	0.000103434007287517
