chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	5666480	5678224	3	gain	-	-1	germline	1	0.000538309708295474	0.000685157126352309
1	16611888	16617760	7	gain	-	-1	germline	1	0.0143077032840818	0.036633800633561
1	16882000	16943656	4	gain	-	-1	germline	1	4.33201051437157e-08	4.1312070431232e-09
1	31429880	31432816	5	gain	-	-1	germline	1	0.0832840356754625	0.270070700103901
1	40552032	40563776	1	loss	A	-1	germline	1	0.00168207960120504	0.00172176683881264
1	55660688	55669496	1	loss	A	-1	germline	1	0.00553339067946291	0.0096153131914074
1	125079472	125082408	10	gain	-	-1	germline	1	0.0832666850342035	0.270040566448604
1	125082408	125085344	5	gain	-	-1	germline	1	0.0832854816944222	0.270073211352632
1	125085344	125088280	1	loss	A	-1	germline	1	0.122919876852378	0.333275841840523
1	125149936	125164616	3	gain	-	-1	germline	1	0.000178693234134033	0.000415015014373132
1	155105944	155117688	1	loss	A	-1	germline	1	0.00134158878375654	0.00165919024173566
1	156063080	156095376	2	neutral	AA	61.5334	somatic	0	0.464871096408911	0.757738943148453
1	156095376	156110056	2	neutral	AA	54.5678	somatic	0	0.0345802661573864	0.074800451255293
1	159642064	159671424	2	neutral	AA	85.0881	somatic	0	0.575555878050861	0.569906011691323
1	167945072	167962688	2	neutral	AA	100	somatic	0	0.0787297270323141	0.202512702413606
1	168159400	168212248	2	neutral	AA	8.53235	somatic	0	0.438938727759148	0.0892488675020491
1	172428344	172469448	2	neutral	AA	100	somatic	0	0.000354389393833912	0.00150084177270504
1	191656208	191776584	2	neutral	AA	100	somatic	0	0.92328240879166	0.804766895158367
1	194225208	194245760	2	neutral	AA	58.0998	somatic	0	0.0348088222873266	0.142418557912448
1	194480640	194483576	0	loss	-	-1	germline	1	0.0832717453354054	0.270049355177857
1	208271032	208282776	3	gain	AAB	5.5738	germline	1	0.000534494282314197	0.000676292796288558
1	209125408	209201744	2	neutral	AA	45.744	somatic	0	0.278908769922172	0.231252001819594
1	209903448	209912256	1	loss	A	-1	germline	1	0.00490297731696309	0.00952007463093163
1	222199416	222208224	1	loss	A	-1	germline	1	0.0144632868733976	0.0370622628052126
1	228065544	228071416	1	loss	A	-1	germline	1	0.0208421878139409	0.0568751007145685
1	234774304	234777240	4	gain	AAAB	20.1049	germline	1	0.0832898198733274	0.270080745201094
1	234777240	234783112	8	gain	AAAAAABB	8.37065	germline	1	0.0143071329717852	0.0366331136349924
1	236095504	236098440	5	gain	AAABB	38.8201	somatic	0	0.08328258967684	0.270068188872214
1	238552936	238579360	2	neutral	AA	100	somatic	0	0.225773538755892	0.445083004881048
1	239959280	240003320	2	neutral	AA	20.1061	somatic	0	0.0323185918909275	0.0213398530825093
1	247360936	247440208	2	neutral	AA	14.6533	somatic	0	0.000576556338567429	0.0026405694314835
2	3179688	3182624	7	gain	AAAAABB	77.0418	germline	1	0.0832710224199821	0.270048099632328
2	15061680	15073424	2	neutral	AA	100	somatic	0	0.723322679155159	0.793358025250437
2	16130384	16150936	1	loss	A	-1	somatic	0	0.00152137499473985	0.00870883508819609
2	18294216	18297152	0	loss	-	-1	germline	1	0.083265962154367	0.270039310932893
2	25913136	25921944	2	neutral	AA	100	somatic	0	0.310244084538901	0.361844192213032
2	33725832	33899056	2	neutral	AA	16.0541	somatic	0	0.329851240739192	0.0506095379219358
2	35751672	35766352	1	loss	A	-1	germline	1	0.000340269180015293	0.000257248674107147
2	51054104	51356512	2	neutral	AA	100	somatic	0	0.450734313887385	0.367946301568787
2	67903808	67921424	2	neutral	AA	100	somatic	0	0.656746576118816	0.709290715804516
2	89774072	89782880	6	gain	-	-1	germline	1	0.0027004922026049	0.00495837596077331
2	89782880	89791688	4	gain	-	-1	germline	1	0.0143131793025656	0.0366430762175833
2	89794624	89815176	4	gain	AAAA	18.3222	germline	1	2.21205485420937e-05	1.23005292617107e-05
2	89815176	89818112	2	neutral	AA	33.7419	germline	1	0.118634506677867	0.326905822084776
2	89818112	89823984	4	gain	AABB	27.5707	germline	1	0.0143129510982225	0.0366423890668248
2	89823984	89826920	6	gain	AAAAAA	9.04646	germline	1	0.0832782518029949	0.270060655279422
2	89826920	89841600	25	gain	AAAAAAAAAAAAAAAAABBBBBBBB	5.89666	germline	1	0.000107524798555562	9.08094384736158e-05
2	89841600	89850408	4	gain	AABB	19.5304	germline	1	0.00270186422415389	0.00495991046415911
2	91412360	91415296	5	gain	-	-1	germline	1	0.0832854816944222	0.270073211352632
2	100299632	100411200	2	neutral	AA	100	somatic	0	0.19789451582911	0.243594014424784
2	107202168	107213912	2	neutral	AA	100	somatic	0	0.148779778277367	0.208127098400375
2	109198648	109201584	10	gain	AAAAABBBBB	100	germline	1	0.0832666850342035	0.270040566448604
2	117040704	117046576	1	loss	A	-1	somatic	0	0.0198829978677009	0.0538318865890319
2	120496376	120522800	2	neutral	AA	55.8586	somatic	0	0.33934737983327	0.355837628375994
2	125684288	125693096	1	loss	A	-1	somatic	0	0.00551149828864544	0.00957952978056797
2	129169320	129653760	2	neutral	AA	14.9356	somatic	0	0.36659154865603	0.35241116917718
2	132243312	132246248	4	gain	AABB	8.37755	germline	1	0.0832883737933545	0.270078233901228
2	138179904	138194584	2	neutral	AA	100	somatic	0	0.71500771855966	0.805897383690203
2	139944440	139953248	2	neutral	AA	70.8261	somatic	0	0.738195395520093	0.927300986851748
2	146104168	146121784	1	loss	A	-1	germline	1	0.000103882563401313	5.21331100246103e-05
2	150308520	150332008	2	neutral	AA	100	somatic	0	0.595999597845357	0.517420499708417
2	165155872	165161744	1	loss	A	-1	somatic	0	0.0211885371582038	0.0545713431010802
2	165161744	165199912	2	neutral	AA	100	germline	1	0.0767714966631715	0.0701338144802137
2	171318536	171327344	2	neutral	AA	100	somatic	0	0.624159519413141	0.630844386798678
2	172040792	172046664	1	loss	A	-1	germline	1	0.0205713377738145	0.0556588832751116
2	175575736	175681432	2	neutral	AA	100	somatic	0	0.00122029569263272	0.00778981095427966
2	176400752	176409560	1	loss	A	-1	germline	1	0.0209433003795292	0.0571988753455001
2	183928656	183940400	1	loss	A	-1	somatic	0	0.00146021943166437	0.00159158597391285
2	186753088	186788320	2	neutral	AA	41.0034	somatic	0	0.253339301223159	0.096902281356527
2	194360264	194483576	2	neutral	AA	100	somatic	0	0.125764030727281	0.344121562153942
2	199903432	200020872	2	neutral	AA	54.5678	somatic	0	0.00765202395651846	0.0642857322689316
2	203532328	203673256	2	neutral	AA	100	somatic	0	0.0130601599219298	0.0589274932238147
2	214380848	214398464	2	neutral	AA	54.5683	somatic	0	0.696858360011299	0.818441617348913
2	214712616	214744912	2	neutral	AA	100	germline	1	0.545428213821331	0.582355739732981
2	229680344	229865312	2	neutral	AA	27.4086	somatic	0	0.0411388204972026	0.0221286894726962
2	236703256	236712064	2	neutral	AA	54.5678	germline	1	0.91084016478375	0.93178161339323
3	1582504	1588376	2	neutral	AA	100	somatic	0	0.543008873670117	0.561746945791717
3	4638880	4650624	2	neutral	AA	59.2758	somatic	0	0.70953187155013	0.938763366089081
3	10038184	10076352	2	neutral	AA	21.8272	somatic	0	0.288616997971114	0.383203664240236
3	12671776	12698200	2	neutral	AA	15.5913	germline	1	0.00564578536771705	0.00397443158181632
3	16362328	16371136	2	neutral	AA	1.1658	somatic	0	0.0155840870835722	0.0596870241199186
3	21720528	21741080	2	neutral	AA	100	somatic	0	0.921522452109203	0.613635416896774
3	24565512	24589000	2	neutral	AA	100	somatic	0	0.216351592739101	0.189636774458422
3	26177376	26209672	2	neutral	AA	100	somatic	0	0.488896246418338	0.573626966209017
3	27821536	27903744	2	neutral	AA	54.5681	somatic	0	0.668267626653291	0.849401757620709
3	28590768	28596640	2	neutral	AA	100	somatic	0	0.337599189215673	0.296605066822179
3	28722888	28737568	2	neutral	AA	100	somatic	0	0.0725622089258055	0.0779599985935658
3	32061120	32066992	1	loss	A	-1	somatic	0	0.0201584100839935	0.0517142014524674
3	37827424	37847976	2	neutral	AA	54.5914	somatic	0	0.00159692089592877	0.0078744744200141
3	43194432	43241408	2	neutral	AA	54.6578	somatic	0	0.00131543500109788	0.0164432492898993
3	43552624	43579048	2	neutral	AA	100	somatic	0	0.424437786412853	0.322079351553114
3	46512112	46520920	2	neutral	AA	54.5678	somatic	0	0.19382414178832	0.267863220762713
3	49007712	49060560	2	neutral	AA	54.5678	somatic	0	0.135645164496464	0.215104170847131
3	49756392	49759328	2	neutral	AA	100	somatic	0	0.519702439344407	0.734656251515831
3	53963680	53993040	2	neutral	AA	40.536	somatic	0	0.00633114303672449	0.0729530315240833
3	60681248	60687120	2	neutral	AA	100	somatic	0	0.0468574381324553	0.0836797760570147
3	60757584	60763456	2	neutral	AA	100	somatic	0	0.738618189298361	0.714312979197092
3	62078784	62081720	2	neutral	AA	100	somatic	0	0.373589318270345	0.615649199543006
3	64926704	64950192	2	neutral	AA	54.5693	somatic	0	0.0972858074389223	0.374658137762589
3	66855656	66952544	2	neutral	AA	100	somatic	0	0.183425512884237	0.207558958299084
3	68584960	68593768	1	loss	A	-1	germline	1	0.0227907857073935	0.0630879656171397
3	71940808	71955488	2	neutral	AA	100	somatic	0	0.00766499903109662	0.00543336506036618
3	75669528	75866240	2	neutral	AA	0.2339	germline	1	0.00330867237855955	0.0435786071661016
3	79694784	79774056	2	neutral	AA	100	somatic	0	0.232747225599972	0.270690163851799
3	88508656	90669552	2	neutral	AA	1.17741	somatic	0	0.00350200174130613	1.48143786237176e-05
3	90669552	90710656	0	loss	-	-1	germline	1	9.17314734301193e-11	1.44029232984622e-12
3	90710656	91518056	2	neutral	AA	-1	somatic	0	NA	NA
3	91541544	93714184	2	neutral	AA	-1	somatic	0	NA	NA
3	93714184	93717120	0	loss	-	-1	germline	1	0.0832652392796144	0.270038055421447
3	93717120	94031272	2	neutral	AA	54.5786	germline	1	0.0396946579380506	0.00719601258389557
3	98687768	98696576	1	loss	A	-1	germline	1	0.00564663280264517	0.00923122788854547
3	99178080	99183952	1	loss	A	-1	germline	1	0.0207307608796622	0.0565203685633413
3	111151088	111177512	2	neutral	AA	100	somatic	0	0.501403686479685	0.771731219041402
3	117525144	117566248	2	neutral	AA	100	somatic	0	0.52950395764563	0.308579728968554
3	118546872	118655504	2	neutral	AA	100	somatic	0	0.225130296479022	0.0778167759531864
3	118761200	118767072	2	neutral	AA	100	somatic	0	0.479355128636754	0.447258257763871
3	119923856	119959088	2	neutral	AA	36.5744	somatic	0	0.260475900135632	0.528206396542601
3	124046000	124048936	2	neutral	AA	100	somatic	0	0.460923207492005	0.689766294214688
3	127178712	127219816	2	neutral	AA	100	somatic	0	0.0824585781717152	0.193608994906835
3	130414184	130420056	2	neutral	AA	100	somatic	0	0.804227099351779	0.967849736064978
3	136864576	136893936	2	neutral	AA	71.7704	somatic	0	0.183627573275042	0.147466480263789
3	142997880	143000816	2	neutral	AA	100	somatic	0	0.665628054308472	0.829921166635523
3	143840512	143987312	2	neutral	AA	57.6459	somatic	0	0.0208896714683168	0.00530449944890576
3	144016672	144142920	2	neutral	AA	50.6783	somatic	0	0.91320871373062	0.433139086711694
3	146377216	146447680	2	neutral	AA	100	somatic	0	0.198826685186934	0.213262354367825
3	146864592	146867528	2	neutral	AA	100	somatic	0	0.245818848592359	0.488392094835979
3	150326136	150467064	2	neutral	AA	100	germline	1	5.50391306885121e-06	3.52639047963565e-05
3	151421264	151441816	2	neutral	AA	54.5678	somatic	0	0.815790677156468	0.943445709066859
3	152789440	152792376	2	neutral	AA	100	somatic	0	0.518677301197841	0.733910987702584
3	153887504	153902184	2	neutral	AA	54.5787	somatic	0	0.0588158792359017	0.0339186355435596
3	156524032	156594496	2	neutral	AA	54.5732	somatic	0	0.0346174238428904	0.0390150083036425
3	162225744	162255104	2	neutral	AA	100	somatic	0	0.862752620363373	0.999646726441411
3	162795328	162906896	1	loss	A	-1	somatic	0	2.93551459426257e-20	0
3	163109480	163121224	2	neutral	AA	100	somatic	0	0.304869976756988	0.620968136431445
3	164868144	164876952	2	neutral	AA	100	somatic	0	0.0379583075783485	0.0655456687509997
3	173878728	173937448	2	neutral	AA	55.1301	somatic	0	0.0418237916223679	0.100914785710281
3	175989712	176118896	2	neutral	AA	36.8648	somatic	0	0.554833439162728	0.204031790208463
3	178403104	178408976	2	neutral	AA	100	somatic	0	0.819282887908596	0.934337221407629
3	186239288	186245160	2	neutral	AA	100	somatic	0	0.622797988878293	0.586275796366189
3	189389616	189392552	2	neutral	AA	100	somatic	0	0.0848290022018617	0.272743459829973
3	193156504	193168248	1	loss	A	-1	germline	1	0.00148410634473538	0.00157959076151648
3	194926912	194944528	2	neutral	AA	85.753	somatic	0	0.00449576870981621	0.018053642946476
3	195141240	195147112	2	neutral	AA	36.3799	somatic	0	0.0497545228599148	0.139504844090753
3	197381408	197390216	3	gain	AAA	15.8151	somatic	0	0.0456767325144889	0.139315040423373
4	554904	557840	3	gain	AAB	10.7077	somatic	0	0.0833035586474602	0.270104603399925
4	6893728	6899600	1	loss	A	-1	somatic	0	0.0295380177041746	0.0569737803740012
4	12712880	12715816	1	loss	A	-1	somatic	0	0.0833389986948276	0.270166139538306
4	18485056	18534968	2	neutral	AA	93.3305	somatic	0	0.195759007429055	0.120414862344926
4	26523824	26820360	2	neutral	AA	26.3283	somatic	0	4.58288213876727e-09	4.33142754108218e-07
4	31591360	31650080	2	neutral	AA	100	somatic	0	0.0503530598045016	0.0111140235739217
4	31814496	31817432	0	loss	-	-1	germline	1	0.0832717453354054	0.270049355177857
4	32827416	32842096	1	loss	A	-1	somatic	0	0.00778567428393453	0.00985759027241007
4	40020616	40026488	1	loss	A	-1	somatic	0	0.0275263832815897	0.0563549463804205
4	40293664	40296600	4	gain	AAAB	51.6766	germline	1	0.0832905429209406	0.270082000857418
4	42759904	42768712	1	loss	A	-1	germline	1	0.00548368898810394	0.00954868277600684
4	43449864	43452800	1	loss	A	-1	somatic	0	0.0834055721828915	0.270281704417437
4	45008880	45014752	3	gain	AAB	1.54997	somatic	0	0.015602639249549	0.0405356172517177
4	48655392	48661264	1	loss	A	-1	somatic	0	0.0295248238505846	0.0573076579021676
4	49148640	49151576	86	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB	100	somatic	0	0.0832652392796144	0.270038055421452
4	49653632	49656568	13	gain	AAAAAAAAABBBB	5.87345	germline	1	0.0832666850342035	0.270040566448604
4	60120472	60123408	1	loss	A	-1	somatic	0	0.0913858218512141	0.283868777934218
4	62803976	62809848	1	loss	A	-1	germline	1	0.0194659483993077	0.0449465152083057
4	63200336	63203272	0	loss	-	-1	germline	1	0.08327680588572	0.27005814411591
4	70619608	70622544	1	loss	A	-1	germline	1	0.0833252551862464	0.270142277372209
4	72759952	72765824	1	loss	A	-1	somatic	0	0.0264860640877888	0.0684703388434411
4	74559720	74565592	1	loss	A	-1	somatic	0	0.0217720708359298	0.0585490444897446
4	89181000	89186872	3	gain	AAB	25.1708	germline	1	0.0143309891329438	0.03667057149454
4	91010128	91016000	1	loss	A	-1	somatic	0	0.0243339883107157	0.0564133712519252
4	91738256	91750000	2	neutral	AA	100	somatic	0	0.0863428937409575	0.0742513123476177
4	95643136	95731216	2	neutral	AA	88.144	somatic	0	0.375203933463203	0.709879936686516
4	103112320	103115256	1	loss	A	-1	somatic	0	0.115293536973386	0.321862957293209
4	104459944	104589128	2	neutral	AA	57.599	somatic	0	0.00180540589786923	0.00338801024750157
4	105572688	105590304	2	neutral	AA	27.3064	somatic	0	0.757908671047002	0.687510223522004
4	106136400	106142272	1	loss	A	-1	germline	1	0.0241685765794593	0.0507838050370127
4	107266760	107366584	2	neutral	AA	54.57	somatic	0	0.192443787324462	0.434541772297843
4	117457616	117486976	2	neutral	AA	100	somatic	0	0.536852025506165	0.811424085459002
4	150455320	150528720	2	neutral	AA	36.3876	somatic	0	0.786221306390412	0.433467861073561
4	152680808	152730720	2	neutral	AA	37.5406	somatic	0	0.091407539291164	0.186323702525709
4	153790616	153834656	2	neutral	AA	100	somatic	0	0.00415848247290175	0.0209943561670696
4	168866976	168881656	2	neutral	AA	100	somatic	0	0.631782799869455	0.612108327007472
4	172070152	172073088	1	loss	A	-1	germline	1	0.0841757259777331	0.271615815407176
4	182169992	182181736	2	neutral	AA	100	somatic	0	0.0725622326482737	0.0389613377860876
4	187061368	187240464	2	neutral	AA	53.5728	somatic	0	0.564252572868918	0.524921187248848
5	8147400	8170888	2	neutral	AA	61.8081	somatic	0	0.21075492490412	0.50343955604955
5	12809768	12821512	1	loss	A	-1	germline	1	0.00147904343947064	0.00158065483322467
5	18649472	18708192	2	neutral	AA	40.9593	somatic	0	0.787674878464775	0.743351840601579
5	36658896	36664768	2	neutral	AA	100	somatic	0	0.231319059899082	0.364575225074327
5	40966008	40974816	2	neutral	AA	100	somatic	0	0.514901838328325	0.555051326835603
5	42472176	42522088	2	neutral	AA	54.6231	somatic	0	0.228415888361084	0.332562896018257
5	45005944	45014752	1	loss	A	-1	germline	1	0.00564768878207448	0.00871136765130476
5	49656568	49659504	190	gain	-	-1	germline	1	0.0832652392796144	0.270038055421452
5	55161568	55176248	2	neutral	AA	54.5683	somatic	0	0.259688622901897	0.149032584163216
5	55575544	55587288	2	neutral	AA	100	somatic	0	0.72041493628456	0.847145892477715
5	55684176	55707664	2	neutral	AA	100	germline	1	0.689407789417566	0.807267277798595
5	58027104	58038848	0	loss	-	-1	germline	1	0.0143088439688376	0.0366386099391757
5	58943136	58966624	2	neutral	AA	100	somatic	0	0.0707466489452233	0.0331667161358936
5	64503920	64533280	2	neutral	AA	93.3849	somatic	0	0.498635128043648	0.641104632158525
5	84650752	84659560	1	loss	A	-1	germline	1	0.0181620363489731	0.0484517811272588
5	85276120	85425856	2	neutral	AA	43.0388	somatic	0	0.00163597955753772	0.00226590137190652
5	86917344	86923216	1	loss	A	-1	germline	1	0.0160067921064077	0.0416673825806173
5	103626120	103678968	2	neutral	AA	100	somatic	0	0.993982976315626	0.951463765954797
5	137064224	137545728	2	neutral	AA	54.5679	somatic	0	0.00489958889289473	0.0024342658735268
5	141174624	141177560	7	gain	-	-1	germline	1	0.0832710224199821	0.270048099632328
5	144295592	144319080	2	neutral	AA	100	somatic	0	0.703286373944112	0.669721038855243
5	146750088	146767704	2	neutral	AA	54.5678	somatic	0	0.0461803638652891	0.225399762150481
5	151685504	151849920	2	neutral	AA	36.7139	germline	1	0.48574070442621	0.458215951122432
5	158805304	158931552	2	neutral	AA	100	somatic	0	0.00223081608664709	0.011248335911391
5	163538136	163558688	2	neutral	AA	100	somatic	0	0.573112733665792	0.366879493702959
5	178585136	178588072	6	gain	AAAAAA	4.06605	germline	1	0.0832811436985547	0.270065677657572
6	255432	381680	3	gain	-	-1	germline	1	6.44003588649757e-28	0
6	17375248	17381120	1	loss	A	-1	somatic	0	0.0215970977227153	0.0566500985902719
6	32486840	32566112	0	loss	-	-1	germline	1	4.37230037155806e-10	1.21674892383794e-11
6	32566112	32574920	1	loss	A	-1	germline	1	NA	NA
6	32574920	32577856	3	gain	-	-1	germline	1	0.0834472024820742	0.270354579075037
6	32577856	32665936	1	loss	A	-1	germline	1	1.55675622352581e-06	1.14006297724512e-06
6	35657720	35663592	1	loss	A	-1	germline	1	0.0203673814969163	0.0553637548807241
6	51200904	51203840	1	loss	A	-1	somatic	0	0.0833585321024009	0.270200051578569
6	54063504	54069376	1	loss	A	-1	somatic	0	0.0235918988202555	0.052249159675504
6	60232040	60240848	3	gain	-	-1	germline	1	0.00270346572098906	0.00496395805995764
6	73881504	73893248	1	loss	A	-1	germline	1	0.00159770218760484	0.00157366657697477
6	97865688	98018360	2	neutral	AA	100	somatic	0	0.0163684566673872	0.0362775155532261
6	107754136	107786432	2	neutral	AA	54.5718	somatic	0	0.809274802427934	0.871376592234458
6	122040712	122087688	2	neutral	AA	54.8265	germline	1	0.735342690559187	0.569040454742745
6	131999624	132172848	2	neutral	AA	73.1661	somatic	0	0.866517771257649	0.4167666001957
6	134938560	135070680	2	neutral	AA	100	somatic	0	0.00133481697943338	0.00704572396137682
6	144448264	145132352	2	neutral	AA	26.0216	somatic	0	1.45203046767805e-16	1.71307412699662e-13
6	148047800	148059544	2	neutral	AA	100	somatic	0	0.875868025349256	0.772446122615187
6	153420680	153429488	3	gain	AAB	0.429756	somatic	0	0.00271040166661912	0.00498431156700008
6	153429488	153432424	2	neutral	AA	1.96836	somatic	0	0.107621046254373	0.310066133934481
6	153435360	153476464	2	neutral	AA	54.5678	somatic	0	0.0318752692021555	0.0594447223848243
6	157307944	157310880	6	gain	AAAABB	6.89695	germline	1	0.0832724682559127	0.270050610727657
6	157313816	157316752	4	gain	AAAB	19.103	germline	1	0.0832898198733274	0.270080745201094
6	160787104	160860504	2	neutral	AA	6.41886	somatic	0	0.985762295967093	0.75677143446088
6	165311480	165320288	1	loss	A	-1	germline	1	0.00596623946688047	0.00946837315990701
6	166180536	166192280	2	neutral	AA	54.5693	somatic	0	0.998544814297221	0.935681353100319
6	168074256	168121232	2	neutral	AA	12.2087	somatic	0	0.862090125232096	0.565199927595492
7	229008	261304	2	neutral	AA	22.4994	somatic	0	3.69908021784649e-06	9.39161853719117e-06
7	739872	780976	2	neutral	AA	7.72367	germline	1	0.00325453616739367	0.0119525455423962
7	2847920	2853792	2	neutral	AA	36.3821	somatic	0	0.779286685565047	0.731334221018015
7	9762200	9765136	0	loss	-	-1	germline	1	0.0832717453354054	0.270049355177857
7	13664144	13696440	2	neutral	AA	100	somatic	0	0.901163483314866	0.979627104704802
7	24081072	24086944	1	loss	A	-1	somatic	0	0.0208254564197284	0.0557997777692225
7	28928408	28934280	2	neutral	AA	100	somatic	0	0.694281135865691	0.67882316978198
7	31274272	31280144	1	loss	A	-1	germline	1	0.015322156197382	0.0396838354954872
7	35869112	35877920	2	neutral	AA	54.5678	somatic	0	0.196783696710819	0.410291389451858
7	57469264	57486880	2	neutral	AA	16.2802	somatic	0	0.157353707628126	0.0600593162771902
7	57486880	57498624	3	gain	AAA	5.1959	germline	1	0.000541613377943678	0.000685657762209524
7	57880304	58032976	2	neutral	AA	2.71569	germline	1	0.703033873109638	0.878286791486697
7	61059992	61964280	2	neutral	AA	5.74363	germline	1	0.605961825775201	0.928433742347445
7	62296048	62357704	3	gain	AAB	0.600715	germline	1	3.44037004756668e-09	2.75402731730878e-08
7	62401744	62404680	4	gain	-	-1	germline	1	0.0832869277337195	0.270075722618408
7	62436976	62454592	2	neutral	AA	21.4976	somatic	0	0.000134746427357119	0.000541224454999156
7	62519184	62574968	2	neutral	AA	5.19251	somatic	0	0.106004625994792	0.10327839830441
7	65226176	65229112	0	loss	-	-1	germline	1	0.083265962154367	0.270039310932893
7	70954312	70963120	1	loss	A	-1	germline	1	0.0208628208104982	0.0562223107271623
7	77478104	77489848	2	neutral	AA	100	somatic	0	0.590178060817492	0.628272635470963
7	93476368	93529216	2	neutral	AA	100	somatic	0	0.082395731105055	0.198213367610446
7	95695984	95792872	2	neutral	AA	36.546	somatic	0	0.789627653294303	0.413630612062415
7	96796984	96949656	2	neutral	AA	86.8648	somatic	0	0.16328540483879	0.342847083999612
7	100731224	100745904	1	loss	A	-1	germline	1	0.000892165301675737	0.00154421732854548
7	100948488	100957296	3	gain	AAB	1.3286	germline	1	0.00270502645435078	0.0049689868738183
7	100957296	100960232	13	gain	AAAAAAAABBBBB	5.76817	germline	1	0.0832666850342035	0.270040566448604
7	100960232	100971976	3	gain	AAB	1.02024	germline	1	0.000532706574474043	0.000671630216545149
7	101262640	101271448	2	neutral	AA	2.46025	somatic	0	0.146600958680533	0.103507060520027
7	106101168	106104104	3	gain	AAB	19.7118	somatic	0	0.0832941582352756	0.270088279202958
7	108162240	108185728	2	neutral	AA	100	somatic	0	0.888185578816684	0.816216091848777
7	121048344	121195144	2	neutral	AA	47.3367	somatic	0	0.484437375446639	0.698275928520728
7	122924448	123059504	2	neutral	AA	58.3489	somatic	0	0.00150232148962932	0.00575519128132096
7	129436496	129442368	2	neutral	AA	100	somatic	0	0.710964285865829	0.723344797726242
7	129941488	129950296	2	neutral	AA	36.4025	somatic	0	0.244983256324189	0.390739000533713
7	143846384	143849320	3	gain	AAB	37.9641	somatic	0	0.0832999430026155	0.270098324777406
7	143875744	144178152	1	loss	A	-1	germline	1	2.85059341514779e-59	0
7	145070696	145079504	1	loss	A	-1	somatic	0	0.00622037632090959	0.00969173942189494
7	149063656	149277984	2	neutral	AA	19.3689	somatic	0	6.03123719639466e-05	0.000102108232627462
7	149277984	149280920	2	neutral	AA	100	somatic	0	0.907949194265142	0.938545113981644
7	152401888	152407760	7	gain	AAAAABB	0.872746	germline	1	0.0143078173489475	0.0366341441370726
7	154172296	154178168	2	neutral	AA	100	somatic	0	0.744044741546775	0.610004866159957
7	156371360	156459440	2	neutral	AA	12.1818	somatic	0	0.000206305074067924	0.0124170851807061
7	157322624	157331432	1	loss	A	-1	germline	1	0.00672523775718446	0.00951716754281617
7	157569248	157622096	2	neutral	AA	23.9042	somatic	0	2.94414908516876e-05	6.72743052879676e-05
8	642984	648856	1	loss	A	-1	germline	1	0.026322334908363	0.0563439663193703
8	6112752	6115688	0	loss	-	-1	germline	1	0.0832717453354054	0.270049355177857
8	6206704	6209640	2	neutral	AA	100	somatic	0	0.329773646462372	0.574795640188217
8	18047592	18068144	2	neutral	AA	54.5678	somatic	0	0.565238419623279	0.551095262607097
8	19844424	19850296	2	neutral	AA	59.9712	somatic	0	0.970244979236185	0.997010289904025
8	25208496	25214368	0	loss	-	-1	germline	1	0.0143184288883706	0.0366664460526263
8	25552008	25560816	1	loss	A	-1	germline	1	0.00701603961227146	0.00967248524585673
8	26127464	26250776	2	neutral	AA	18.7356	somatic	0	0.377336805574334	0.31245450109824
8	26840912	26958352	2	neutral	AA	100	somatic	0	0.001168258833296	0.0121734438727175
8	28778672	28802160	2	neutral	AA	36.3786	somatic	0	0.0163463150626928	0.0452357841709257
8	32821544	32824480	0	loss	-	-1	germline	1	0.0832804207170385	0.270064422056638
8	39374696	39527368	1	loss	A	-1	germline	1	4.21785978979004e-29	0
8	40916096	40919032	0	loss	-	-1	germline	1	0.08328258967684	0.270068188872209
8	42331248	42337120	0	loss	-	-1	germline	1	0.0145335102307061	0.037316690419958
8	43235536	43238472	9	gain	AAAAAABBB	7.96138	somatic	0	0.0832666850342035	0.270040566448604
8	43238472	43241408	13	gain	AAAAAAAAABBBB	6.74642	somatic	0	0.0832666850342035	0.270040566448604
8	43241408	43244344	6	gain	AAAABB	5.80613	somatic	0	0.0832811436985547	0.270065677657572
8	43775760	43781632	4	gain	AAAB	28.7457	somatic	0	0.0143138639348524	0.0366441069648604
8	50117520	50126328	1	loss	A	-1	somatic	0	0.00618475306168011	0.0093717134446083
8	61057056	61092288	2	neutral	AA	18.4899	somatic	0	0.854309502187634	0.950700990266301
8	61679488	61694168	2	neutral	AA	100	somatic	0	0.00922819722957749	0.0699230342331977
8	80437592	80484568	2	neutral	AA	36.3851	somatic	0	0.32531518513537	0.679369848632079
8	88200376	88209184	2	neutral	AA	100	somatic	0	0.596186153432105	0.907177508142363
8	92087640	92096448	2	neutral	AA	100	somatic	0	0.882647875453128	0.933450642656894
8	95111720	95132272	2	neutral	AA	100	somatic	0	0.420977982796794	0.818049109079322
8	111280272	111286144	1	loss	A	-1	somatic	0	0.0189549059997701	0.0484995585330412
8	116647280	116706000	2	neutral	AA	100	somatic	0	0.00433045669433498	0.0086285757342055
8	119139944	119148752	1	loss	A	-1	germline	1	0.00712107301867459	0.009944303149659
8	132751240	132856936	2	neutral	AA	27.4992	somatic	0	2.74150231896865e-13	5.52945467191535e-11
8	141943856	141958536	2	neutral	AA	54.5728	somatic	0	0.230547877846547	0.296128980838004
8	144125304	144186960	2	neutral	AA	5.30815	germline	1	0.882104609244515	0.968928317155531
8	144189896	144233936	2	neutral	AA	100	somatic	0	0.116435339959505	0.175275699246466
8	145067760	145070696	3	gain	-	-1	somatic	0	0.0834149827785685	0.270298037145858
9	40869120	40913160	4	gain	-	-1	germline	1	0.00053250158678203	0.000671353184884982
9	40913160	40916096	6	gain	-	-1	germline	1	0.0832717453354054	0.270049355177862
9	40921968	40924904	5	gain	-	-1	germline	1	0.0832854816944222	0.270073211352632
9	40924904	40927840	6	gain	-	-1	germline	1	0.0832717453354054	0.270049355177862
9	40927840	40930776	5	gain	-	-1	germline	1	0.0832854816944222	0.270073211352632
9	76148096	76151032	2	neutral	AA	100	somatic	0	0.161063925412379	0.386478545436831
9	83714168	83931432	2	neutral	AA	36.3933	somatic	0	0.376578470004908	0.741268257171866
9	85966080	86086456	2	neutral	AA	25.0398	somatic	0	0.402685055849804	0.392939046466889
9	87448760	87489864	2	neutral	AA	37.9991	somatic	0	0.130704420001664	0.121788893682554
9	88496912	88538016	2	neutral	AA	80.1179	somatic	0	0.281211572322056	0.397401370680864
9	88966672	88975480	2	neutral	AA	18.1898	somatic	0	0.896645186153587	0.989196557129147
9	92924400	92930272	2	neutral	AA	100	somatic	0	0.364309321829066	0.518964794528945
9	93100560	93103496	2	neutral	AA	100	somatic	0	0.370355400247346	0.612726682973384
9	99178080	99207440	2	neutral	AA	100	somatic	0	0.661998962502067	0.837346681229423
9	110966120	111033648	2	neutral	AA	36.4154	germline	1	0.0441035850476909	0.0299152496037649
9	111946744	111949680	2	neutral	AA	100	somatic	0	0.782508951314558	0.889986207025361
9	113218032	114280864	1	loss	A	-1	somatic	0	1.90318894902774e-201	0
9	114316096	114377752	2	neutral	AA	54.5678	somatic	0	0.240865596809399	0.356700281654931
9	114377752	129424752	1	loss	A	-1	somatic	0	0	0
9	129445304	130766504	1	loss	A	-1	somatic	0	1.3404728888144e-267	0
9	130766504	130769440	2	neutral	AA	100	somatic	0	0.422736026792069	0.658487559456616
9	131432976	131435912	2	neutral	AA	100	somatic	0	0.376313621041161	0.618098966674787
9	137325528	137328464	5	gain	AAAAA	8.62063	germline	1	0.0832854816944222	0.270073211352632
9	137331400	137395992	2	neutral	AA	17.7362	somatic	0	0.00077601235650154	3.13297440360794e-05
10	38485088	38526192	3	gain	-	-1	somatic	0	5.66909178198508e-10	9.39374134034665e-11
10	38526192	38529128	15	gain	-	-1	germline	1	0.0832666850342035	0.270040566448604
10	38573168	38576104	3	gain	-	-1	germline	1	0.0832999430026155	0.270098324777406
10	38576104	38581976	4	gain	-	-1	germline	1	0.0143127228970889	0.0366417019273406
10	39556728	39562600	1	loss	A	-1	somatic	0	0.0204574283837655	0.0556277795095829
10	41829192	41843872	2	neutral	AA	8.31437	germline	1	0.437103649914269	0.46307700044604
10	41858552	41914336	36	gain	AAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBB	100	germline	1	2.2093434794936e-05	1.22901532281228e-05
10	42298952	42322440	3	gain	AAB	27.5884	germline	1	4.35653893185864e-06	1.11465884558015e-05
10	46059968	46095200	2	neutral	AA	100	somatic	0	0.735617533179811	0.566052619209144
10	46515048	46559088	4	gain	AABB	0.488886	germline	1	4.25190921821937e-10	1.02446939820311e-11
10	49794560	49803368	1	loss	A	-1	germline	1	0.00606099422615871	0.00910685198546923
10	53540896	53570256	2	neutral	AA	100	somatic	0	0.221403152768914	0.281790635081846
10	64638976	64641912	1	loss	A	-1	somatic	0	0.0833158527908409	0.270125951513344
10	67301928	67316608	2	neutral	AA	100	somatic	0	0.952271075072596	0.902116570303691
10	68611384	68617256	2	neutral	AA	54.5687	somatic	0	0.449313243300914	0.791226771731593
10	69518608	69530352	1	loss	A	-1	germline	1	0.00698753742580336	0.0371838984863196
10	85208592	85337776	2	neutral	AA	100	somatic	0	0.310785535331311	0.257960230967653
10	85983696	86013056	2	neutral	AA	100	somatic	0	0.57365109211116	0.859576168027734
10	89084112	89142832	2	neutral	AA	27.3044	somatic	0	0.00428869797450564	0.00365721409300657
10	111782328	111823432	2	neutral	AA	54.5678	somatic	0	0.646156576127127	0.923766338358695
10	113441168	113455848	1	loss	A	-1	germline	1	0.075578622106308	0.0867891907018563
10	117266776	117296136	2	neutral	AA	100	somatic	0	0.0783616999892262	0.10556779621705
10	118840472	118905064	2	neutral	AA	7.8372	somatic	0	0.112091495982765	0.389624653234018
10	120467016	120469952	0	loss	-	-1	germline	1	0.0832724682559127	0.270050610727653
10	122586808	122592680	1	loss	A	-1	somatic	0	0.0264407828717567	0.0530617304727138
10	126215704	126259744	2	neutral	AA	42.4188	somatic	0	0.184642787524417	0.37243054686611
10	128461744	128464680	3	gain	AAA	12.1849	somatic	0	0.0832948813133965	0.27008953488485
10	130493456	130787056	2	neutral	AA	17.1436	somatic	0	4.79240688484325e-10	1.02352770703362e-09
10	132363688	132366624	4	gain	AABB	15.5681	somatic	0	0.0832905429209406	0.270082000857418
11	4947160	4953032	1	loss	A	-1	germline	1	0.0226972396912927	0.0493015752608202
11	5763368	5786856	1	loss	A	-1	germline	1	4.33379343655766e-06	1.20185921903548e-06
11	18922520	18940136	3	gain	AAB	4.30397	germline	1	2.21436037665097e-05	1.23178413092839e-05
11	20927808	21171496	2	neutral	AA	93.3662	somatic	0	0.835445783512881	0.525458249290981
11	24547896	24650656	2	neutral	AA	84.0611	germline	1	0.000346982628029692	0.000102525974709944
11	34078152	34142744	2	neutral	AA	100	somatic	0	0.0946368819407397	0.30497730804201
11	38188552	38479216	2	neutral	AA	46.6958	somatic	0	0.0177141447767631	0.0278317445322225
11	41353560	41382920	2	neutral	AA	100	somatic	0	0.854857680206845	0.282165489207646
11	45408176	45411112	1	loss	A	-1	germline	1	0.083323808607935	0.270139765654739
11	54756400	54776952	1	loss	A	-1	germline	1	5.33953314466912e-05	3.70165990626337e-05
11	55599032	55684176	1	loss	A	-1	germline	1	9.397578034805e-18	0
11	60784008	60833920	2	neutral	AA	36.3786	somatic	0	0.103175498779132	0.338832503599073
11	69732936	69768168	2	neutral	AA	27.4004	somatic	0	0.408076221179139	0.469893003782963
11	74066472	74110512	2	neutral	AA	100	germline	1	0.0251509948319636	0.0959536851394535
11	74313096	74316032	0	loss	-	-1	germline	1	0.0832775288418154	0.270059399695533
11	83397080	83426440	2	neutral	AA	9.92143	somatic	0	0.636196488305736	0.474890250408008
11	86030672	86101136	2	neutral	AA	42.1342	somatic	0	0.697794559536741	0.878464907672979
11	96565040	96567976	1	loss	A	-1	germline	1	0.0959770267016564	0.291458012544137
11	101004272	101013080	2	neutral	AA	100	somatic	0	0.618327230303431	0.775852451508195
11	104395352	104404160	1	loss	A	-1	germline	1	0.0221618449191836	0.0520619198922028
11	105331936	105364232	2	neutral	AA	100	germline	1	0.825972721362994	0.477625096935229
11	134471736	134486416	1	loss	A	-1	germline	1	0.000968392838209431	0.00353666875807268
12	2146216	2149152	0	loss	-	-1	germline	1	0.083265962154367	0.270039310932893
12	2254848	2257784	5	gain	-	-1	germline	1	0.0832847586824001	0.270071955726136
12	6145048	6150920	1	loss	A	-1	germline	1	0.0255133404321595	0.053685227140258
12	33235520	33241392	1	loss	A	-1	somatic	0	0.0202458717626752	0.0470838461221367
12	34101640	34113384	1	loss	A	-1	germline	1	0.00146007100312747	0.00162184518499375
12	37616032	37624840	1	loss	A	-1	germline	1	0.00437114718079125	0.00916078822146205
12	37718792	37745216	2	neutral	AA	21.578	somatic	0	0.243387380999332	0.329494022515579
12	45508000	45516808	1	loss	A	-1	germline	1	0.0143319029842747	0.0366970527446555
12	50378824	50422864	2	neutral	AA	100	somatic	0	0.197133631771199	0.106891752053541
12	51679472	51697088	2	neutral	AA	54.5678	somatic	0	0.00674635378465571	0.0069188221902603
12	55892632	55898504	2	neutral	AA	100	somatic	0	0.972916631913534	0.932363238625407
12	60305440	60422880	2	neutral	AA	100	somatic	0	0.411261252804155	0.224491902439412
12	64797520	64829816	2	neutral	AA	100	somatic	0	0.17902153994196	0.522054297065877
12	67624888	67671864	2	neutral	AA	100	somatic	0	0.241460336802644	0.530980700294244
12	71541512	71588488	2	neutral	AA	54.5678	somatic	0	0.389349383440305	0.377616718862613
12	72551496	72563240	2	neutral	AA	54.5678	somatic	0	0.495358088044139	0.934485741360719
12	79272000	79380632	2	neutral	AA	100	somatic	0	0.475395151908355	0.302733760554079
12	79639000	79697720	2	neutral	AA	54.5686	somatic	0	0.624153283656385	0.466528101017866
12	79762312	79768184	3	gain	AAB	72.1975	somatic	0	0.0143271058381876	0.0366709152996963
12	83238536	83311936	2	neutral	AA	100	somatic	0	0.10485556633947	0.0237260933412859
12	87252048	87281408	2	neutral	AA	40.658	somatic	0	0.813606196101434	0.654827101833397
12	95182184	95196864	2	neutral	AA	36.8869	somatic	0	0.0395738907000195	0.0807329310353576
12	99251480	99295520	2	neutral	AA	100	somatic	0	0.0492521069549981	0.0314863724206325
12	99398280	99410024	1	loss	A	-1	germline	1	0.0202588686307151	0.0549316432308519
12	102413552	102419424	2	neutral	AA	22.0076	somatic	0	0.140315959437697	0.387636287726848
12	114280864	114283800	2	neutral	AA	100	somatic	0	0.196500765768001	0.431295727288364
12	118118216	118135832	1	loss	A	100	somatic	0	0.00057665383166491	0.00056745370989375
12	120848696	120898608	2	neutral	AA	21.9059	somatic	0	0.0173124909712224	0.0168647985900729
12	122974360	122986104	2	neutral	AA	55.5894	somatic	0	0.909335681222294	0.968311548995537
12	122986104	122994912	2	neutral	AA	100	somatic	0	0.0759690915197713	0.295783572397468
12	123206304	123259152	2	neutral	AA	16.8553	somatic	0	0.514461838208885	0.445787970413212
12	123382464	123397144	2	neutral	AA	100	somatic	0	0.46199019034625	0.705309197959115
12	125969080	125974952	2	neutral	AA	100	somatic	0	0.400988244112045	0.842916072980351
12	127892160	127909776	2	neutral	AA	56.4763	somatic	0	0.751155315008127	0.943212841185224
12	129007840	129019584	2	neutral	AA	22.1509	somatic	0	0.909878057004995	0.657528960625916
12	131647304	131653176	1	loss	A	-1	somatic	0	0.0274497431465322	0.0553381980195009
12	132255056	132269736	2	neutral	AA	62.215	somatic	0	0.0942513677386215	0.261308050819623
13	22020000	22022936	0	loss	-	-1	germline	1	0.0832789747692586	0.270061910867563
13	29386424	29392296	1	loss	A	27.0703	somatic	0	0.0459273371261904	0.098227115393217
13	29500928	29506800	2	neutral	AA	100	somatic	0	0.39691225363588	0.50903818324046
13	33561416	33570224	1	loss	A	-1	germline	1	0.00455414100564253	0.00709109842080713
13	38482152	38485088	1	loss	A	-1	germline	1	0.0832854816944222	0.270073211352627
13	43391144	43417568	2	neutral	AA	6.30777	somatic	0	0.245889904621541	0.505270142817858
13	44022384	44048808	2	neutral	AA	100	somatic	0	0.0711455010522711	0.109940119508734
13	45422856	45425792	1	loss	A	-1	germline	1	0.0834830542182886	0.270416156768526
13	49542064	49547936	2	neutral	AA	100	somatic	0	0.361144552050421	0.320527909421941
13	50493328	50502136	1	loss	A	-1	germline	1	0.0218912527026751	0.056432358050053
13	52002432	52043536	2	neutral	AA	100	somatic	0	0.368814295618532	0.648946247609758
13	52645416	52677712	2	neutral	AA	100	somatic	0	0.0402042311672525	0.280378081594046
13	56465152	56573784	2	neutral	AA	100	somatic	0	0.000954794575833486	0.00203505304885887
13	59580248	59586120	2	neutral	AA	36.5581	somatic	0	0.767279830513234	0.895669401823156
13	63024176	63027112	2	neutral	AA	100	somatic	0	0.806401693801034	0.900541906337368
13	63027112	63065280	3	gain	AAB	0.284689	germline	1	4.9619400485086e-08	6.33000325600541e-07
13	63065280	63068216	5	gain	AAABB	0.541255	germline	1	0.0832840356754625	0.270070700103901
13	63649544	63664224	1	loss	A	-1	germline	1	0.000394022091655576	0.000266754362833743
13	68670104	68693592	1	loss	A	-1	germline	1	4.14427562261505e-06	1.13210452756807e-06
13	73103464	73106400	2	neutral	AA	100	somatic	0	0.351955099276038	0.595807450528875
13	81215632	81397664	2	neutral	AA	15.9875	somatic	0	0.0324032793292008	0.00387183452429074
13	85681288	85707712	2	neutral	AA	93.5922	somatic	0	0.914816576087478	0.943481002637164
13	92017176	92175720	2	neutral	AA	61.4725	somatic	0	0.128349131752585	0.131683660186932
13	95375960	95393576	2	neutral	AA	100	germline	1	0.56303763007811	0.654087257468641
13	95986648	96074728	2	neutral	AA	27.2839	germline	1	0.444164495213607	0.195289025256344
13	96383008	96385944	2	neutral	AA	100	somatic	0	0.20064679836347	0.436316088609947
13	98602624	98605560	1	loss	A	-1	germline	1	0.0833223620499662	0.270137253954316
13	101242088	101245024	1	loss	A	-1	germline	1	0.0833462328578777	0.270178699190996
13	109216264	109219200	1	loss	A	-1	germline	1	0.0860720917990271	0.27487920833536
13	110546272	110560952	2	neutral	AA	100	somatic	0	0.705232014873499	0.674530762278257
13	113394192	113400064	1	loss	A	-1	germline	1	0.0263404081467872	0.056421365023797
13	114154616	114157552	1	loss	A	-1	somatic	0	0.10427843410349	0.304809957845468
14	0	16092216	3	gain	AAB	-1	germline	1	NA	NA
14	16092216	16095152	9	gain	-	-1	germline	1	0.0832666850342035	0.270040566448604
14	16095152	18684704	3	gain	AAB	-1	germline	1	0.273001185853081	0.706437216785916
14	18684704	18693512	3	gain	AAB	21.4253	germline	1	0.0143987531251915	0.0368535293357044
14	18693512	19726984	3	gain	AAB	-1	germline	1	NA	NA
14	19726984	19955992	3	gain	AAB	0.508391	germline	1	6.60653113299895e-26	0
14	22909608	22921352	2	neutral	AA	100	somatic	0	0.461390689389219	0.909336300149968
14	23027048	23029984	2	neutral	AA	100	somatic	0	0.855610021546272	0.920263100979479
14	23458640	23482128	2	neutral	AA	100	somatic	0	0.754001649406506	0.518281906843603
14	24245488	24248424	2	neutral	AA	100	somatic	0	0.635188972954594	0.811912370545695
14	33176800	33179736	2	neutral	AA	100	somatic	0	0.242551588450504	0.484791760587468
14	34348264	34351200	1	loss	A	-1	germline	1	0.083316576021513	0.270127207323073
14	37298944	37304816	1	loss	A	-1	germline	1	0.0260461658421788	0.0671644217515611
14	37818616	37853848	2	neutral	AA	54.8601	somatic	0	0.214781740146061	0.4005768176316
14	40143928	40149800	1	loss	A	-1	somatic	0	0.0244746474390695	0.0552944800228803
14	41142168	41200888	1	loss	A	-1	germline	1	2.095785396853e-12	1.25455201782643e-14
14	42519152	42525024	1	loss	A	-1	somatic	0	0.0208720320430797	0.0564853502607335
14	44638944	45117512	2	neutral	AA	13.9109	somatic	0	0.138308791198516	0.0318752405157078
14	52845064	52850936	2	neutral	AA	54.5706	somatic	0	0.450761633959254	0.565544915174581
14	55610776	55742896	2	neutral	AA	100	somatic	0	2.23486647458736e-05	0.00131715994841708
14	65143968	65155712	2	neutral	AA	27.2839	somatic	0	0.0829496495965981	0.0438805663101717
14	68828648	68849200	2	neutral	AA	38.7358	somatic	0	0.416906180570439	0.5119928572262
14	69553840	69556776	1	loss	A	-1	germline	1	0.0835479087230606	0.270529285313598
14	70710624	70845680	2	neutral	AA	50.5969	somatic	0	0.105055221761072	0.332143668635874
14	72563240	72580856	2	neutral	AA	100	somatic	0	0.773004515744736	0.987824776660068
14	75772288	75813392	2	neutral	AA	54.5873	somatic	0	0.0286947885804349	0.0692564985061551
14	79639000	79647808	1	loss	A	-1	somatic	0	0.00425040495522318	0.00947693039127906
14	80831016	80877992	2	neutral	AA	100	somatic	0	0.298830637495712	0.553233930091825
14	81603184	81609056	2	neutral	AA	100	somatic	0	0.678437323997424	0.521770056340625
14	82031840	82037712	1	loss	A	-1	somatic	0	0.0143124946991648	0.036643419797189
14	82152216	82155152	2	neutral	AA	36.3786	somatic	0	0.58466743614624	0.779868862643225
14	83141648	83168072	2	neutral	AA	100	somatic	0	0.572810317414908	0.842232081706886
14	83229728	83244408	2	neutral	AA	100	somatic	0	0.317225454204508	0.46846837215415
14	94636088	94688936	2	neutral	AA	27.3028	somatic	0	0.258156032033921	0.174707842407071
14	96802856	96814600	2	neutral	AA	100	germline	1	0.0260693116116743	0.0350864605567623
14	98024232	98027168	2	neutral	AA	100	germline	1	0.561642001920595	0.764393816803704
14	100050072	100067688	2	neutral	AA	36.3786	germline	1	0.935533487224108	0.998529297691244
14	100164576	100170448	1	loss	A	-1	somatic	0	0.0296694814941065	0.0567815915915114
14	101711848	101726528	1	loss	A	34.7742	germline	1	0.0172559121048067	0.00953833593123632
14	103253248	103259120	2	neutral	AA	100	somatic	0	0.200502915352549	0.31072821393664
15	20660632	20669440	6	gain	-	-1	germline	1	0.00270053376965999	0.00495844570148507
15	20669440	20672376	5	gain	-	-1	germline	1	0.0832854816944222	0.270073211352632
15	22225520	22249008	3	gain	AAB	3.31058	germline	1	0.000534580990986422	0.000674798491573259
15	25481544	25534392	2	neutral	AA	3.71142	somatic	0	0.550207118027317	0.336661851951946
15	34180912	34198528	2	neutral	AA	100	germline	1	0.185557404654228	0.259877208222402
15	47962496	47991856	2	neutral	AA	70.3006	somatic	0	0.0738729815559012	0.0215742454105297
15	52712944	52715880	2	neutral	AA	100	somatic	0	0.262166368919291	0.506149485893878
15	53103432	53106368	2	neutral	AA	100	somatic	0	0.252110034570804	0.495255653277011
15	58813952	58843312	2	neutral	AA	100	somatic	0	0.244672320755166	0.71931666052841
15	59389408	59392344	2	neutral	AA	100	somatic	0	0.224877679473421	0.464790389212739
15	60023584	60026520	2	neutral	AA	100	somatic	0	0.645866268842986	0.818380399651991
15	60760520	60772264	2	neutral	AA	100	somatic	0	0.539701526366675	0.745386252167106
15	61092288	61115776	2	neutral	AA	100	somatic	0	0.355332814457309	0.331713195687917
15	62243200	62260816	2	neutral	AA	36.3786	germline	1	0.769650005152082	0.989427121571785
15	62457528	62460464	2	neutral	AA	100	somatic	0	0.680071193834842	0.838124437807385
15	68449904	68452840	2	neutral	AA	100	somatic	0	0.460353162082652	0.689323723976628
15	68913792	68949024	2	neutral	AA	36.8237	somatic	0	0.510317019483519	0.746926489559332
15	72216792	72325424	2	neutral	AA	36.8414	germline	1	0.774542541833566	0.994885955415762
15	74659544	74662480	2	neutral	AA	100	somatic	0	0.766035552675882	0.882427708412207
15	79289616	79395312	2	neutral	AA	55.0723	germline	1	0.0513190645859744	0.221147667107603
15	80284920	80293728	2	neutral	AA	54.5679	somatic	0	0.117068201924965	0.24428224460426
15	83229728	83232664	1	loss	A	-1	somatic	0	0.109535747241734	0.313038438340367
15	88913824	88966672	2	neutral	AA	28.2685	somatic	0	0.401059883709228	0.691852806874092
15	91750000	91767616	2	neutral	AA	6.52994	germline	1	0.780151632321406	0.748707285487466
15	94618472	94621408	2	neutral	AA	100	somatic	0	0.171372904085419	0.399887786534556
15	99489296	99503976	2	neutral	AA	100	somatic	0	0.376870631452454	0.65175853454646
15	101506328	101512200	2	neutral	AA	15.1287	somatic	0	0.842216618510312	0.869951774395974
15	101729464	101826352	2	neutral	AA	100	somatic	0	1.44952190753457e-10	2.76796519038669e-09
16	1024664	1027600	4	gain	AAAA	8.30884	germline	1	0.0832912659736385	0.270083256518004
16	1180272	1189080	2	neutral	AA	100	somatic	0	0.0277716707849227	0.088457978116193
16	2751032	2777456	2	neutral	AA	100	germline	1	0.716614282877857	0.782233257203785
16	3975344	3992960	2	neutral	AA	55.0741	somatic	0	0.710076180520261	0.807312152607798
16	11832080	12005304	2	neutral	AA	29.671	somatic	0	0.00198084793046805	0.00141523969145607
16	13200256	13203192	1	loss	A	-1	somatic	0	0.122233350488716	0.332260693958273
16	19401088	19415768	2	neutral	AA	100	somatic	0	0.557587243614133	0.915973845545982
16	21559048	21582536	4	gain	AABB	4.49641	germline	1	9.65396425904783e-07	2.25442086665417e-07
16	22416360	22419296	2	neutral	AA	100	germline	1	0.186867043465965	0.419460747103663
16	22616008	22698216	4	gain	AAAB	2.30279	germline	1	2.27421268804657e-19	0
16	30340624	30405216	2	neutral	AA	36.3787	somatic	0	0.447147079156683	0.858844831636908
16	31917256	31949552	2	neutral	AA	100	germline	1	0.00238151104540692	0.0130428290559247
16	34063472	34066408	8	gain	AAAAABBB	1.71607	germline	1	0.0832688537042156	0.270044333021291
16	34084024	34086960	6	gain	AAAAAA	100	germline	1	0.0832818666851552	0.270066933262763
16	34095768	34098704	7	gain	AAAAAAA	8.86147	germline	1	0.0832710224199821	0.270048099632328
16	36039400	36089312	2	neutral	AA	100	germline	1	0.24600094551234	0.401402348045853
16	36121608	36127480	4	gain	-	-1	germline	1	0.0143147768228371	0.0366471993589015
16	46840944	46952512	2	neutral	AA	28.4227	somatic	0	0.000677168021647313	0.000448010216205108
16	47319512	47428144	2	neutral	AA	25.177	somatic	0	0.123323033078393	0.121850467129379
16	53038840	53088752	2	neutral	AA	100	somatic	0	0.279497127462356	0.610240019811514
16	54089928	54122224	2	neutral	AA	100	somatic	0	0.105759051219359	0.0388905946483014
16	55739960	55754640	2	neutral	AA	100	germline	1	0.235199448167817	0.552561894329655
16	58259048	58282536	2	neutral	AA	36.3957	somatic	0	0.906952532745623	0.951653218996344
16	58482184	58502736	2	neutral	AA	69.6704	somatic	0	0.599605970398732	0.934014792228632
16	63079960	63085832	2	neutral	AA	100	germline	1	0.0640811027696436	0.0931097601852496
16	66045320	66048256	2	neutral	AA	100	somatic	0	0.881195210311637	0.929559079143666
16	66996584	66999520	2	neutral	AA	100	somatic	0	0.204198649960683	0.440600145331655
16	70149848	70161592	4	gain	AABB	2.60197	germline	1	0.000532529717995057	0.000671403546308236
16	71576744	71720608	2	neutral	AA	47.272	somatic	0	0.82917634588691	0.95124099749729
16	73605520	73661304	2	neutral	AA	31.7977	somatic	0	0.432348851102074	0.258568156785168
16	75516856	75519792	2	neutral	AA	100	somatic	0	0.185110628285251	0.417274712467356
16	76506288	76509224	1	loss	A	-1	germline	1	0.101420080384951	0.300266313360435
16	78602592	78605528	1	loss	A	-1	somatic	0	0.125509681237161	0.337084367820928
16	84398256	84401192	2	neutral	AA	100	somatic	0	0.116800675704602	0.324149055544435
16	84641944	84671304	2	neutral	AA	54.5873	somatic	0	0.512650913603654	0.618646326802249
16	88491040	88493976	2	neutral	AA	100	somatic	0	0.972448880776024	0.957207357804026
17	2483856	2533768	2	neutral	AA	100	somatic	0	0.0030405367025045	0.0103026519689426
17	6192024	6194960	4	gain	AAAB	45.82	somatic	0	0.0832927120942878	0.270085767851959
17	7753976	7765720	2	neutral	AA	61.7438	somatic	0	0.0760517468972606	0.191472893219173
17	11303600	11324152	2	neutral	AA	100	germline	1	0.507292305938282	0.592453937374346
17	15989456	15992392	2	neutral	AA	100	somatic	0	0.34545825200005	0.589725196492282
17	16817408	16820344	4	gain	AABB	16.2718	germline	1	0.0832876507609947	0.270076978257687
17	19879656	19882592	2	neutral	AA	100	somatic	0	0.232923905735528	0.473945327924733
17	21288936	21303616	4	gain	AABB	0.251995	germline	1	0.000107662725339807	9.09180670952692e-05
17	21855584	21858520	5	gain	-	-1	germline	1	0.0832854816944222	0.270073211352632
17	21858520	21884944	3	gain	-	-1	germline	1	1.3052626135181e-06	2.01524323151236e-06
17	21884944	21967152	0	loss	-	-1	germline	1	8.55979572665044e-20	0
17	21967152	21970088	8	gain	-	-1	germline	1	0.0832688537042156	0.270044333021291
17	21975960	21978896	18	gain	-	-1	germline	1	0.0832666850342035	0.270040566448604
17	21978896	21990640	10	gain	-	-1	germline	1	0.0143065626795422	0.0366320831582747
17	22122760	22157992	5	gain	AAABB	0.300498	germline	1	1.97750264097078e-09	7.56472662288843e-11
17	22712896	22718768	2	neutral	AA	11.3662	somatic	0	0.935648378631554	0.940598086010458
17	26782192	26805680	3	gain	-	-1	somatic	0	1.06656639489471e-06	3.35715304777828e-07
17	26808616	26829168	4	gain	-	-1	germline	1	2.2134280816675e-05	1.23147234184495e-05
17	26829168	26864400	3	gain	-	-1	germline	1	1.20528627153019e-08	1.45186818123477e-09
17	26864400	26867336	6	gain	-	-1	germline	1	0.0832818666851552	0.270066933262763
17	26867336	26879080	3	gain	-	-1	germline	1	0.00053567908890062	0.000678807160554573
17	26937800	26940736	12	gain	AAAAAAAABBBB	6.4272	germline	1	0.0832666850342035	0.270040566448604
17	30255480	30308328	2	neutral	AA	45.7937	somatic	0	0.587317386956703	0.316448830413954
17	34045856	34048792	2	neutral	AA	100	somatic	0	0.412438545369817	0.649786418856204
17	35431648	35434584	2	neutral	AA	100	somatic	0	0.674270872563584	0.834903315241251
17	41864424	41870296	2	neutral	AA	54.5696	somatic	0	0.399224443676364	0.687446465258036
17	44107528	44110464	2	neutral	AA	100	somatic	0	0.089587688819378	0.28085248129047
17	45079344	45085216	2	neutral	AA	100	somatic	0	0.869925333398276	0.981253380403854
17	48267840	48394088	2	neutral	AA	100	somatic	0	0.529919216166981	0.446035091342958
17	48652456	48714112	2	neutral	AA	72.4056	germline	1	0.00310674041245659	0.0117573341298751
17	52660096	52663032	2	neutral	AA	100	somatic	0	0.121057649809902	0.33052757636613
17	56723520	56741136	2	neutral	AA	56.55	somatic	0	0.0119610416745329	0.0642082913218556
17	60613720	60778136	2	neutral	AA	46.2486	somatic	0	0.00226402782728676	0.00738581407022532
17	61520944	61535624	2	neutral	AA	100	somatic	0	0.358885279083977	0.532241373997357
17	61782248	61785184	2	neutral	AA	100	somatic	0	0.999131769760783	0.963752816573211
17	62334216	62351832	2	neutral	AA	100	germline	1	0.505184364342966	0.354477336226147
17	66723536	66738216	2	neutral	AA	54.8387	germline	1	0.125386672701906	0.24342094665977
17	69404104	69424656	2	neutral	AA	54.5678	somatic	0	0.355805084576917	0.463822552959
17	74730008	74738816	2	neutral	AA	13.3645	somatic	0	0.752627022265265	0.609823602037553
17	75337760	75346568	2	neutral	AA	54.5693	germline	1	0.250760475802343	0.176734506203923
17	76212688	76215624	2	neutral	AA	100	somatic	0	0.411641341396881	0.649084536467267
17	76620792	76623728	2	neutral	AA	100	somatic	0	0.408024415907743	0.645978596124893
17	78285504	78288440	1	loss	A	-1	somatic	0	0.0836679426914391	0.270736777315315
17	81350688	81356560	2	neutral	AA	61.4986	somatic	0	0.536385555424482	0.897011020665212
17	81380048	81427024	2	neutral	AA	11.1986	somatic	0	0.541201908879928	0.529016139939785
17	82583808	82586744	4	gain	AABB	19.083	somatic	0	0.0832919890314208	0.270084512182851
18	1726368	1840872	1	loss	A	-1	germline	1	2.85279356032577e-21	0
18	5305352	5308288	1	loss	A	-1	germline	1	0.0979891351506603	0.294738361247485
18	29594880	29597816	1	loss	A	-1	germline	1	0.0890975795868278	0.280024034521686
18	40681216	40687088	1	loss	A	-1	germline	1	0.0181925844742866	0.0451377620218442
18	41283096	41288968	1	loss	A	-1	germline	1	0.0158804388627506	0.0414090258501213
18	44078168	44081104	1	loss	A	-1	somatic	0	0.116443586424115	0.32360360715212
18	48990096	48995968	2	neutral	AA	100	somatic	0	0.237371103120097	0.239774840907022
18	49439304	49442240	1	loss	A	-1	germline	1	0.120581600297944	0.329808577342012
18	51165672	51265496	2	neutral	AA	100	somatic	0	0.383761699646923	0.663345354894651
18	53426392	53429328	1	loss	A	-1	somatic	0	0.107571334916598	0.309983004332835
18	53678888	53684760	1	loss	A	-1	germline	1	0.0285662993359645	0.0563055505882227
18	54562624	54568496	2	neutral	AA	54.5755	somatic	0	0.602572763633018	0.87575041981169
18	56611952	56626632	2	neutral	AA	54.5678	somatic	0	0.855063898092012	0.59946620120699
18	56685352	56694160	2	neutral	AA	54.5686	germline	1	0.650489604978902	0.874180333271408
18	60355352	60396456	2	neutral	AA	54.5678	somatic	0	0.880713051092863	0.91882010044657
18	62539736	62542672	2	neutral	AA	100	germline	1	0.944610643695247	0.94966015651603
18	63217952	63232632	2	neutral	AA	47.7933	somatic	0	0.289033937839213	0.459499969122781
18	64545024	64547960	1	loss	A	-1	somatic	0	0.121595755866867	0.331315784167592
18	66168632	66209736	2	neutral	AA	54.5697	somatic	0	0.142377349462181	0.204477483320943
18	66518016	66544440	2	neutral	AA	100	somatic	0	0.0155453240733848	0.016987012846269
18	69826888	69897352	2	neutral	AA	22.7511	somatic	0	0.0703189554555505	0.120307611009134
18	70687136	70775216	2	neutral	AA	70.711	somatic	0	0.47698983145734	0.347790669424416
18	71145152	71148088	2	neutral	AA	100	germline	1	0.148228078575985	0.369200448940927
18	75657784	75660720	2	neutral	AA	100	somatic	0	0.987597439329762	0.961014258679035
18	77481040	77495720	2	neutral	AA	100	somatic	0	0.0480937859419123	0.165371057295481
18	79166304	79248512	2	neutral	AA	5.23454	somatic	0	1.8644797930451e-07	1.46084632013377e-06
18	79518624	79524496	1	loss	A	-1	somatic	0	0.0297894499901507	0.0569274430445186
18	80214456	80217392	3	gain	-	-1	somatic	0	0.0834729130683378	0.270398562097644
18	80217392	80258496	2	neutral	AA	18.7961	germline	1	4.37356765199974e-07	1.78145243567851e-06
19	968880	974752	2	neutral	AA	54.5678	somatic	0	0.0612551034990069	0.128331477193083
19	5863192	5904296	2	neutral	AA	33.5862	germline	1	0.195985276941874	0.332491113436702
19	6136240	6139176	1	loss	A	-1	somatic	0	0.124069451893913	0.334970447562325
19	6999424	7072824	2	neutral	AA	100	somatic	0	0.0573357948415981	0.0586458737995113
19	7448632	7451568	13	gain	AAAAAAAABBBBB	11.8923	germline	1	0.0832666850342035	0.270040566448604
19	8379344	8452744	2	neutral	AA	17.4102	somatic	0	3.30459093741582e-07	5.02322895379326e-06
19	8881400	8972416	2	neutral	AA	0.893002	germline	1	0.520336110328018	0.580834281303468
19	11529672	11550224	2	neutral	AA	36.3786	somatic	0	0.00229680260705326	0.00694649397120783
19	12583696	12589568	0	loss	-	-1	germline	1	0.0148895687751771	0.038393731808373
19	13214936	13217872	2	neutral	AA	100	somatic	0	0.283053401443756	0.528142981956048
19	14641832	14650640	2	neutral	AA	62.2331	somatic	0	0.156920710215601	0.291671939408827
19	15190864	15193800	2	neutral	AA	100	somatic	0	0.12400591870281	0.334885725937162
19	15331792	15334728	1	loss	A	-1	somatic	0	0.108370686912725	0.311228797913316
19	18209072	18212008	2	neutral	AA	100	somatic	0	0.215871418243729	0.454358840389544
19	20546128	20587232	2	neutral	AA	54.6231	somatic	0	4.72350433647398e-05	2.62239707550238e-05
19	24330632	24380544	4	gain	AABB	0.505125	germline	1	9.27685661694402e-13	3.44169137633799e-15
19	24380544	24404032	4	gain	AABB	2.73069	germline	1	0.000107648283324336	9.08775831885977e-05
19	27337096	27340032	4	gain	AAAB	7.9657	germline	1	0.0832876507609947	0.270076978257687
19	27345904	27369392	6	gain	AAAABB	0.185983	germline	1	9.64466012027671e-07	2.2532374210904e-07
19	27375264	27398752	5	gain	AAABB	0.23391	germline	1	9.64853579520903e-07	2.25374453877158e-07
19	27469216	27472152	1	loss	A	-1	germline	1	0.0832941582352756	0.270088279202954
19	27839152	27845024	2	neutral	AA	100	somatic	0	0.902406213911521	0.827848409762715
19	28611320	28617192	2	neutral	AA	4.3655	germline	1	0.701112950644506	0.551541982182447
19	29509736	29515608	1	loss	A	-1	germline	1	0.0222941487621344	0.0570211585066511
19	30992416	31007096	2	neutral	AA	27.2842	somatic	0	0.799499458569541	0.841120503215968
19	35525600	35531472	2	neutral	AA	21.8536	somatic	0	0.366731012288327	0.362201516470323
19	36250792	36259600	2	neutral	AA	100	somatic	0	0.987185370543547	0.95328672638018
19	46286040	46291912	2	neutral	AA	100	somatic	0	0.275766181691074	0.642218260073271
19	49122216	49128088	2	neutral	AA	100	somatic	0	0.193859116558567	0.212457215880084
19	49180936	49260208	2	neutral	AA	25.7385	somatic	0	0.000135601490039821	0.00154355959255181
19	50748760	50813352	2	neutral	AA	21.8317	somatic	0	0.00197398909074189	0.00127068865192737
19	52445768	52457512	2	neutral	AA	100	somatic	0	0.913435912781347	0.942770244393678
19	52824512	52827448	2	neutral	AA	100	somatic	0	0.732836298735322	0.866236425145765
19	55957224	55977776	2	neutral	AA	36.4213	somatic	0	0.417850517969518	0.14220833276563
19	56098152	56121640	2	neutral	AA	53.0745	somatic	0	0.195674085362146	0.222841747763094
19	58279600	58282536	2	neutral	AA	100	somatic	0	0.252465845771976	0.495685173208447
19	58420528	58549712	2	neutral	AA	100	germline	1	1.82412838338978e-12	8.6323448389436e-10
20	64592	67528	6	gain	-	-1	germline	1	0.0832811436985547	0.270065677657572
20	246624	249560	2	neutral	AA	100	somatic	0	0.473264163368028	0.699556289556775
20	2618912	2636528	2	neutral	AA	100	somatic	0	0.494564614418631	0.810906188213147
20	4177928	4180864	2	neutral	AA	100	somatic	0	0.185256079041609	0.417464321224531
20	6306528	6374056	2	neutral	AA	16.6662	somatic	0	0.0637160897235995	0.226656608597074
20	8490912	8496784	2	neutral	AA	27.2839	somatic	0	0.329341388384247	0.431191183400195
20	10384632	10387568	2	neutral	AA	100	somatic	0	0.117158149755678	0.324687979581079
20	13490920	13499728	2	neutral	AA	100	somatic	0	0.726463039170017	0.935681353100319
20	14045824	14048760	2	neutral	AA	100	somatic	0	0.310618756733275	0.55608444321214
20	14248408	14251344	2	neutral	AA	100	somatic	0	0.428318236271326	0.663174026927752
20	14867904	14870840	2	neutral	AA	100	somatic	0	0.203743967277433	0.440032909869326
20	16121576	16262504	2	neutral	AA	7.82804	somatic	0	0.577369840544535	0.633741788469577
20	20827984	20857344	2	neutral	AA	100	somatic	0	0.00380223265850797	0.0267824809355094
20	21306552	21309488	1	loss	A	-1	germline	1	0.0953682729905764	0.290461657651795
20	21379952	21459224	2	neutral	AA	100	somatic	0	0.190949045480449	0.114474084818127
20	22522056	22539672	2	neutral	AA	36.5071	somatic	0	0.908561865011516	0.62186463324205
20	25863224	25869096	2	neutral	AA	10.4292	somatic	0	0.410291666787451	0.625879121061126
20	25983600	26286008	2	neutral	AA	22.1712	somatic	0	0.310151618763694	0.317466876027453
20	26286008	26324176	2	neutral	AA	4.85882	somatic	0	0.179641157322373	0.38911181220045
20	28781608	28787480	7	gain	-	-1	germline	1	0.0143077032840818	0.0366351746645158
20	28802160	28805096	4	gain	-	-1	germline	1	0.0832883737933545	0.270078233901228
20	28805096	28872624	8	gain	-	-1	germline	1	4.59504264418109e-06	1.66450441441146e-06
20	28872624	29263112	3	gain	-	-1	germline	1	0.0254452284553013	0.0215188204276017
20	29263112	29266048	6	gain	-	-1	germline	1	0.0832731911815039	0.270051866281714
20	29266048	29365872	3	gain	-	-1	somatic	0	8.0511873165666e-10	3.58596152771895e-10
20	29885544	29894352	5	gain	-	-1	germline	1	0.0143124946991648	0.0366410147991306
20	31071688	31074624	36	gain	-	-1	germline	1	0.083265962154367	0.270039310932897
20	31162704	31165640	3	gain	-	-1	germline	1	0.0833520205545363	0.270188747219976
20	31165640	31168576	5	gain	-	-1	germline	1	0.0832854816944222	0.270073211352632
20	31168576	31183256	3	gain	-	-1	somatic	0	0.000125996858452394	0.000144182462059161
20	31183256	31189128	15	gain	-	-1	germline	1	0.0143065626795422	0.0366320831582747
20	31189128	31239040	3	gain	AAB	19.3512	germline	1	0.000108025980300381	9.16690428716116e-05
20	31239040	31241976	35	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBB	94.1245	germline	1	0.083265962154367	0.270039310932897
20	31241976	31247848	3	gain	AAA	4.32197	germline	1	0.140472808866147	0.463661695812405
20	33464528	33555544	2	neutral	AA	100	somatic	0	0.147342818205547	0.171284470639497
20	34653608	34656544	0	loss	-	-1	germline	1	0.0832666850342035	0.270040566448599
20	43608408	43617216	2	neutral	AA	100	germline	1	0.254583095094515	0.487134572085973
20	43643640	43646576	0	loss	-	-1	germline	1	0.0832811436985547	0.270065677657568
20	50422864	50443416	2	neutral	AA	54.6559	somatic	0	0.115522380065747	0.321242104892332
20	50508008	50572600	2	neutral	AA	100	somatic	0	0.0783819100384492	0.166340254043695
20	52143360	52146296	1	loss	A	-1	germline	1	0.123326515730105	0.333876021059204
20	53523280	53526216	2	neutral	AA	100	somatic	0	0.521800704719348	0.736234097676024
20	54935496	54961920	2	neutral	AA	100	somatic	0	0.46621916006549	0.70490969344021
20	55217352	55232032	2	neutral	AA	100	somatic	0	0.0507934109963387	0.0593928693387815
20	57099328	57102264	2	neutral	AA	100	somatic	0	0.302598794640249	0.548082877357921
20	57971320	57980128	2	neutral	AA	31.7235	germline	1	0.101420891027467	0.270247214944556
20	62064104	62067040	1	loss	A	-1	germline	1	0.0842786033168832	0.271793638369353
20	62146312	62149248	2	neutral	AA	100	germline	1	0.651087074251126	0.821475551831223
21	8990032	8995904	8	gain	AAAAABBB	1.18215	germline	1	0.0143069048524816	0.0366331136349924
21	10651808	10689976	6	gain	AAAABB	1.42584	germline	1	1.97653226932032e-09	7.56430473813907e-11
21	10689976	10692912	37	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBB	88.8441	germline	1	0.083265962154367	0.270039310932897
21	10692912	10695848	14	gain	AAAAAAAAAAAAAB	53.433	germline	1	0.0832666850342035	0.270040566448604
21	10695848	10704656	5	gain	AAAAB	3.56141	germline	1	0.00270142760276682	0.00495956167516953
21	10704656	10736952	6	gain	AAAABB	5.24383	germline	1	9.22986497844279e-09	5.58800672401105e-10
21	10751632	10754568	13	gain	AAAAAAAABBBBB	4.42929	germline	1	0.0832666850342035	0.270040566448604
21	10763376	10766312	5	gain	AAAAB	12.3547	germline	1	0.0832854816944222	0.270073211352632
21	25910200	25916072	2	neutral	AA	54.5678	germline	1	0.684044121839759	0.56308844057666
21	36629536	36635408	2	neutral	AA	54.5678	somatic	0	0.660861839093759	0.889470948088531
21	39198536	39201472	2	neutral	AA	100	somatic	0	0.0860854580481873	0.274903374351381
21	41473936	41476872	1	loss	A	-1	somatic	0	0.0842486781427989	0.271741922239809
21	44794552	44832720	2	neutral	AA	27.4233	somatic	0	0.0265081219803076	0.0497107771320821
21	45795728	45798664	4	gain	AAAA	4.74819	germline	1	0.0832890968307987	0.27007948954903
22	11212584	11215520	10	gain	-	-1	somatic	0	0.0832666850342035	0.270040566448604
22	16259568	16268376	3	gain	-	-1	somatic	0	0.0027625597800934	0.00514659362323111
22	16717584	16799792	2	neutral	AA	41.5301	germline	1	0.759162507904456	0.759522119878752
22	17657104	17662976	1	loss	A	-1	somatic	0	0.0272172266215351	0.0545480427136219
22	18975368	19022344	3	gain	AAB	1.07792	germline	1	4.41221584289198e-12	2.87547763377916e-14
22	20393456	20411072	2	neutral	AA	100	somatic	0	0.53090012424219	0.874025818463766
22	20443368	20460984	2	neutral	AA	54.5777	somatic	0	0.519644101166075	0.624295673634203
22	22671792	22695280	2	neutral	AA	9.93807	somatic	0	0.0120406060750193	0.0246016853227456
22	26928992	26940736	2	neutral	AA	27.2936	somatic	0	0.823291055597373	0.721604255216472
22	29119248	29122184	3	gain	AAB	12.9333	germline	1	0.0832948813133965	0.27008953488485
22	30132168	30135104	2	neutral	AA	100	somatic	0	0.522842223824467	0.73696470345555
22	36617792	36714680	2	neutral	AA	100	somatic	0	0.505815219777086	0.431647327943372
22	37348856	37354728	1	loss	A	-1	somatic	0	0.0275542614024885	0.0563948893834098
22	37698240	37701176	2	neutral	AA	100	germline	1	0.150126556441823	0.371789326915757
22	40916096	40919032	2	neutral	AA	100	somatic	0	0.142201263048117	0.36089197698623
22	41893784	41964248	2	neutral	AA	84.5457	somatic	0	0.00717123161448127	0.00447889519265743
22	43335360	43344168	2	neutral	AA	75.7593	somatic	0	0.565704034459126	0.636242320222132
22	44013576	44025320	2	neutral	AA	54.5679	somatic	0	0.485184137469025	0.834154342337123
22	45281928	45290736	2	neutral	AA	54.5678	somatic	0	0.0188976401031753	0.0262129088312927
22	48690624	48696496	2	neutral	AA	100	somatic	0	0.270245855694586	0.250327461470025
22	49765200	49788688	2	neutral	AA	36.3786	somatic	0	0.192219400555069	0.687295510086342
22	50643064	50646000	5	gain	AAABB	100	germline	1	0.0832854816944222	0.270073211352632
22	50646000	50707656	2	neutral	AA	100	somatic	0	0.000104555693525036	2.40025753447393e-05
X	67416432	67519192	2	gain	AB	100	germline	1	0.397342346306242	0.187648807622528
X	77865656	77868592	0	loss	-	-1	germline	1	0.083265962154367	0.270039310932893
X	78267888	78270824	3	gain	-	-1	germline	1	0.0832984967802719	0.270095813358227
X	79665424	79671296	0	loss	-	-1	germline	1	0.0143070189117324	0.0366334571328664
X	108772928	108775864	0	loss	-	-1	germline	1	0.083265962154367	0.270039310932893
X	135625584	135743024	2	gain	AA	55.0709	somatic	0	0.242060357480509	0.585008854427729
Y	10651808	10757504	3	gain	-	-1	germline	1	2.24170723404291e-05	5.7850775472934e-05
Y	10757504	10760440	6	gain	-	-1	germline	1	0.0832811436985547	0.270065677657572
Y	10760440	10775120	3	gain	-	-1	germline	1	0.00337344588449559	0.010176836176405
Y	10775120	10778056	5	gain	-	-1	germline	1	0.0832854816944222	0.270073211352632
Y	10778056	10795672	3	gain	-	-1	germline	1	0.000298290902689149	0.00193673678678952
Y	10795672	10798608	6	gain	-	-1	germline	1	0.0832724682559127	0.270050610727657
Y	10798608	10804480	3	gain	-	-1	germline	1	0.0143178581989591	0.0366509792616907
Y	10804480	10825032	2	gain	-	-1	germline	1	0.468941691624603	0.232113123903265
Y	10825032	10827968	3	gain	-	-1	germline	1	0.0832948813133965	0.27008953488485
Y	10827968	10924856	2	gain	-	-1	somatic	0	4.17627065759161e-05	4.85883344170102e-06
Y	10924856	10927792	4	gain	-	-1	germline	1	0.0832898198733274	0.270080745201094
Y	10927792	10986512	2	gain	-	-1	somatic	0	0.0780905721034796	0.0444785477601888
Y	10986512	10989448	8	gain	-	-1	germline	1	0.0832688537042156	0.270044333021291
Y	10989448	10998256	2	gain	-	-1	germline	1	0.358517499868217	0.302135687893161
Y	10998256	11001192	8	gain	-	-1	germline	1	0.0832674079191237	0.270041821968572
Y	11004128	11010000	2	gain	-	-1	germline	1	0.639235497974036	0.824657513450238
Y	11012936	11015872	7	gain	-	-1	germline	1	0.0832710224199821	0.270048099632328
Y	11015872	11036424	2	gain	-	-1	germline	1	0.156507783455277	0.456459124280294
Y	11291856	11315344	26	gain	AAAAAAAAAAAAAAAAABBBBBBBBB	2.31143	germline	1	4.59382840242985e-06	1.66352143016191e-06
Y	11315344	11332960	5	gain	AAABB	0.690663	germline	1	0.0027011989220577	0.00495956167516953
Y	11529672	11532608	18	gain	AAAAAAAAAAAAAAAAAB	1.81215	germline	1	0.0832666850342035	0.270040566448604
Y	11685280	11688216	3	gain	AAA	100	germline	1	0.0833310417029217	0.270152324412544
Y	11688216	11691152	5	gain	AAAAB	59.6141	germline	1	0.0832847586824001	0.270071955726136
Y	11717576	11720512	3	gain	AAB	100	germline	1	0.0833245318945478	0.270141021511348
Y	11720512	11723448	38	gain	AAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBB	100	germline	1	0.083265962154367	0.270039310932897
Y	11723448	11746936	2	gain	AB	6.41803	germline	1	0.698467869243371	0.437652322897947
Y	11746936	11749872	11	gain	AAAAAAABBBB	29.9981	germline	1	0.0832666850342035	0.270040566448604
Y	26635392	26655944	2	gain	AA	17.0082	germline	1	0.840163926029629	0.964037377134279
Y	56826280	56843896	14	gain	AAAAAAAAABBBBB	1.40006	germline	1	2.20957202745376e-05	1.22922277635551e-05
