chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	983180	1165428	2	neutral	AA	32.1642	somatic	0	0.0715079400577093	0.142106440070935
1	1290124	1383646	2	neutral	AA	10.6867	germline	1	0.747854444779663	0.316922270210095
1	3023878	3055052	2	neutral	AA	4.68295	somatic	0	0.471231770083034	0.46669956204846
1	4333186	4652120	2	neutral	AA	4.79016	somatic	0	0.0205568424279276	0.0465093328156118
1	5668872	5676066	3	gain	AAB	1.40651	somatic	0	0.00270387553809786	0.00496407840905422
1	11035596	11313764	2	neutral	AA	36.693	somatic	0	0.0103639957495649	0.0529321287517365
1	16613344	16637324	7	gain	AAAAABB	4.85457	germline	1	0.000107536672198673	9.08163572458376e-05
1	16721254	16723652	4	gain	AAAB	12.607	germline	1	0.0832786702746521	0.27006149788892
1	16723652	16726050	6	gain	AAAABB	8.69325	germline	1	0.083269234071886	0.270045109482834
1	16881920	16944268	3	gain	AAB	1.00598	germline	1	9.27401720936544e-09	5.62358937195029e-10
1	23699434	23905662	2	neutral	AA	37.6006	germline	1	1.81562471293989e-06	0.00012294883820918
1	31430586	31432984	5	gain	AAAAB	31.6954	germline	1	0.0832710032939272	0.270048182253676
1	33106788	33286638	2	neutral	AA	65.0684	somatic	0	0.277774175188953	0.284072802235585
1	34636712	34646304	1	loss	A	-1	germline	1	0.000535216321331605	0.000673774205965483
1	41720404	42051328	2	neutral	AA	100	somatic	0	0.0118190287894388	0.0347270776764764
1	55662376	55667172	0	loss	-	-1	germline	1	0.0143081114883663	0.0366360967467536
1	83011566	83018760	2	neutral	AA	54.5688	germline	1	0.0441490942044959	0.136303424963137
1	86563004	86572596	1	loss	A	-1	germline	1	0.000535361273290958	0.000675786582390425
1	97651356	97680132	2	neutral	AA	100	somatic	0	0.573032521056795	0.837965174211137
1	98063812	98071006	2	neutral	AA	100	somatic	0	0.131499096198465	0.179807103142525
1	98394736	98418716	2	neutral	AA	54.5781	germline	1	0.415779920614823	0.960133513901128
1	103221910	103291452	2	neutral	AA	100	somatic	0	0.0747521484633902	0.268546256338607
1	112259972	112303136	2	neutral	AA	100	germline	1	0.797794350271723	0.804093299533303
1	125067690	125074884	3	gain	-	-1	germline	1	0.00270559044007518	0.00496595819952339
1	125079680	125082078	9	gain	-	-1	germline	1	0.0832674648802952	0.270042036737514
1	125082078	125163610	3	gain	-	-1	germline	1	2.76951389727788e-06	9.60398581506539e-06
1	125163610	125166008	6	gain	-	-1	germline	1	0.083269234071886	0.270045109482834
1	156675728	156690116	2	neutral	AA	100	somatic	0	0.326817191886229	0.569806304387892
1	158977808	158996992	2	neutral	AA	100	somatic	0	0.867144680142437	0.976817002863101
1	169258034	169272422	1	loss	A	-1	germline	1	2.22743063124343e-05	1.23681968884348e-05
1	224011568	224013966	8	gain	AAAAAAAA	1.58761	germline	1	0.0832680546074421	0.270043060983118
1	228066586	228073780	1	loss	A	-1	somatic	0	0.00286218599640166	0.00549654667213084
1	229678042	229685236	1	loss	A	-1	somatic	0	0.0027090742378332	0.00497354094088387
1	230867450	231608432	2	neutral	AA	2.19211	somatic	0	0.50683296649445	0.873912645592189
1	234776190	234783384	8	gain	AAAAAABB	13.4829	germline	1	0.00270014354548506	0.00495793092699814
1	236433208	236445198	2	neutral	AA	36.3786	somatic	0	0.131026747089562	0.367121926446934
2	3179748	3182146	5	gain	-	-1	germline	1	0.0832710032939272	0.270048182253676
2	4165326	4177316	1	loss	A	-1	somatic	0	0.000109063754475443	9.34412274063989e-05
2	16131346	16133744	0	loss	-	-1	somatic	0	0.0832656957191544	0.270038964017711
2	25994320	26099832	2	neutral	AA	100	somatic	0	0.037115013679896	0.0749113423313206
2	27893536	27948690	2	neutral	AA	64.4288	somatic	0	0.854165265412665	0.94722665470661
2	35965204	36034746	2	neutral	AA	46.3096	somatic	0	0.867480992438191	0.7060679409494
2	39180922	39200106	2	neutral	AA	100	somatic	0	0.825423046024033	0.489878991538966
2	52520996	52559364	1	loss	A	-1	germline	1	9.54864725708034e-11	1.60038648999716e-12
2	55494516	55727122	2	neutral	AA	100	somatic	0	0.808262147064509	0.952761015703027
2	69335772	69599552	2	neutral	AA	16.4803	somatic	0	0.615375967232435	0.815340721975766
2	78848638	78855832	1	loss	A	-1	germline	1	0.0146382319321989	0.0376285026061749
2	89773926	89793110	4	gain	AAAB	52.8741	germline	1	4.59661723956312e-06	1.66472796769845e-06
2	89793110	89824284	4	gain	AAAA	1.33676	germline	1	1.97590179616342e-09	7.56795737189009e-11
2	89824284	89829080	14	gain	AAAAAAAAAABBBB	45.191	germline	1	0.0143066226747403	0.0366324537681919
2	89829080	89841070	33	gain	AAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBB	14.3056	germline	1	0.000107522288282873	9.08094104878909e-05
2	89841070	89848264	4	gain	AAAB	10.9737	germline	1	0.00270056739838286	0.00495867053206167
2	89848264	89850662	4	gain	AAAB	25.4561	germline	1	0.0832751315971101	0.270055352151563
2	91411760	91414158	4	gain	-	-1	germline	1	0.083272182792205	0.27005023078175
2	96102248	96107044	2	neutral	AA	54.5678	somatic	0	0.912247592301997	0.997453533554944
2	113233560	113240754	2	neutral	AA	80.2681	somatic	0	0.543141346242639	0.848037627137371
2	117041584	117046380	1	loss	A	-1	somatic	0	0.0144124813543277	0.0369519928249431
2	125686374	125693568	1	loss	A	-1	somatic	0	0.00270948236499081	0.00497302748845019
2	126916548	126921344	1	loss	A	-1	somatic	0	0.0143850638836425	0.0368648354668422
2	132242506	132247302	3	gain	AAB	0.950925	somatic	0	0.0143172334543739	0.0366599240347338
2	136345484	136350280	1	loss	A	-1	somatic	0	0.0513209792583968	0.158949400736858
2	137189580	137223152	1	loss	A	-1	germline	1	9.36432250663282e-11	1.4521717162097e-12
2	169464262	169469058	1	loss	A	-1	germline	1	0.0143273853402285	0.0366865705768913
2	172039714	172046908	1	loss	A	-1	germline	1	0.00272865936447348	0.00501638477964494
2	173718314	173816632	2	neutral	AA	36.3786	somatic	0	0.448904218354254	0.608364520249012
2	182780356	182811530	2	neutral	AA	100	somatic	0	0.0407699873231942	0.0693267126264617
2	183845068	183849864	1	loss	A	-1	somatic	0	0.0143300873698664	0.0366691782819663
2	194823112	194947808	2	neutral	AA	22.471	somatic	0	0.800661780289516	0.891909092289711
2	203316828	203326420	1	loss	A	-1	somatic	0	0.000533735956148656	0.000673753595342164
2	207443786	207803486	2	neutral	AA	11.7937	somatic	0	0.00204959040705368	0.018027851192789
2	209091212	209249480	2	neutral	AA	36.379	somatic	0	0.493285413530642	0.667795588015045
2	211266198	211347730	2	neutral	AA	43.0655	somatic	0	0.01235730934072	0.0804985660032667
2	212165448	212354890	2	neutral	AA	100	somatic	0	0.125895115934251	0.398549618339466
2	213800884	213899202	2	neutral	AA	100	somatic	0	0.972834223212399	0.475429524593891
2	219186792	219191588	0	loss	-	-1	germline	1	0.0143075531672412	0.0366358165063804
2	223867688	223949220	2	neutral	AA	30.8471	somatic	0	0.0413698696695437	0.0871573262944401
3	4431504	4484260	2	neutral	AA	100	somatic	0	0.618750465521425	0.790555357944276
3	18972976	19047314	2	neutral	AA	54.9704	somatic	0	0.012038165896957	0.0286483379870123
3	20771476	20884182	2	neutral	AA	80.8363	somatic	0	0.168997303329805	0.215029696018524
3	22236654	22243848	1	loss	A	-1	germline	1	0.00272368264010624	0.00502208056533415
3	26392388	26397184	1	loss	A	-1	germline	1	0.0143251495176453	0.0366613260620446
3	40780388	40852328	2	neutral	AA	54.5678	somatic	0	0.0088269412792112	0.0153246836518143
3	44792242	44801834	2	neutral	AA	100	germline	1	0.0950001165922455	0.176863108377504
3	46756204	46808960	1	loss	A	-1	germline	1	9.40343324671848e-09	5.73030733974633e-10
3	68585198	68589994	1	loss	A	-1	somatic	0	0.0143681498069848	0.0367584603687887
3	75724044	75884710	2	neutral	AA	1.67518	somatic	0	0.0135576169746475	0.0386748702523785
3	78040512	78138830	2	neutral	AA	100	germline	1	0.0255951258836418	0.0973545293394001
3	80011668	80016464	1	loss	A	-1	germline	1	0.0143130441597284	0.036642542793018
3	90668380	90716340	1	loss	A	-1	germline	1	2.38153531705322e-12	1.98729921407903e-14
3	99178882	99183678	1	loss	A	-1	germline	1	0.0143321374852856	0.0367093036420483
3	108739708	108770882	2	neutral	AA	72.5771	somatic	0	0.304695554112101	0.742472906742293
3	128532800	128657496	2	neutral	AA	18.7829	somatic	0	0.357565447070466	0.711491958532138
3	128679078	128707854	2	neutral	AA	37.2903	germline	1	0.03048910698679	0.0708394366616897
3	129153882	129175464	2	neutral	AA	17.9971	somatic	0	0.188549441023938	0.431784675184478
3	130079510	130086704	1	loss	A	-1	germline	1	0.0143619866088499	0.0367359815814559
3	131988318	131995512	1	loss	A	-1	germline	1	0.0143176989983166	0.0366515128559446
3	157982638	158303970	2	neutral	AA	53.5733	somatic	0	0.573394138049198	0.788704921271642
3	162411744	162426132	1	loss	A	-1	germline	1	2.24103843258502e-05	1.24650360691092e-05
3	162807414	162826598	1	loss	A	-1	germline	1	9.73045839012014e-07	2.27340224867589e-07
3	163651510	163661102	2	neutral	AA	100	somatic	0	0.117506072013874	0.179131133937065
3	166708960	166716154	2	neutral	AA	100	somatic	0	0.959534453155749	0.851200389731196
3	167608210	167728110	2	neutral	AA	44.2499	somatic	0	0.41269335614657	0.427426373039591
3	173521678	173572036	3	gain	AAB	1.52093	germline	1	2.39942322523265e-15	0
3	183015360	183092096	2	neutral	AA	100	somatic	0	0.142563076301003	0.376477009871295
3	193156502	193168492	1	loss	A	-1	germline	1	0.000111207722229846	9.79619012633215e-05
4	551540	556336	3	gain	AAB	4.67923	germline	1	0.0189529434601268	0.0509158952379622
4	7863042	7865440	4	gain	AABB	6.09273	germline	1	0.0832727725464191	0.270051255050041
4	10208286	10232266	1	loss	A	-1	germline	1	4.47716270402529e-08	4.71245442668078e-09
4	10390534	10400126	1	loss	A	-1	germline	1	0.000535420582361894	0.000674784850873134
4	12711798	12716594	1	loss	A	-1	somatic	0	0.0144391944316782	0.0369745871876983
4	14752496	14776476	2	neutral	AA	21.9347	somatic	0	0.781136492284468	0.662204552703802
4	24653838	24716186	2	neutral	AA	59.7241	somatic	0	0.513186982646171	0.625986050733056
4	38658158	38799640	2	neutral	AA	9.46853	somatic	0	0.930640208516194	0.826346352366903
4	40293594	40295992	5	gain	AAABB	7.16673	germline	1	0.0832715930413744	0.270049206516295
4	49089458	49091856	12	gain	AAAAAAAAAAAA	6.60389	germline	1	0.0832668751565316	0.270041012494746
4	49147010	49151806	84	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBBBBBBBBBBBBBBB	91.6316	germline	1	0.0143060644048634	0.0366313329154767
4	61072264	61077060	0	loss	-	-1	germline	1	0.0143079253791892	0.0366363769890027
4	62803620	62810814	1	loss	A	-1	germline	1	0.00270756125662532	0.00496880761021246
4	68518054	68621168	1	loss	A	-1	germline	1	5.136450260847e-20	0
4	70618702	70623498	1	loss	A	-1	germline	1	0.0144856005463462	0.0371716685422862
4	74558616	74563412	1	loss	A	-1	somatic	0	0.0145445955690458	0.0373371739630971
4	82997178	83083506	2	neutral	AA	30.3249	somatic	0	0.113186574703187	0.278715873083738
4	83531932	83555912	2	neutral	AA	27.2839	somatic	0	0.178651376879029	0.453522093431338
4	88112112	88119306	2	neutral	AA	54.5781	somatic	0	0.672716538680604	0.612638736393469
4	102066074	102111636	2	neutral	AA	54.5678	somatic	0	0.0724973531700538	0.0765865653069167
4	106135480	106142674	1	loss	A	-1	germline	1	0.00271687236468166	0.004988623847621
4	106744572	106766154	2	neutral	AA	100	somatic	0	0.136793396971484	0.335841786848784
4	120561848	120597818	2	neutral	AA	100	somatic	0	0.543666833166242	0.845887906068675
4	123192454	123307558	2	neutral	AA	45.0004	somatic	0	0.109665690384834	0.120123976296035
4	138825016	138868180	2	neutral	AA	31.1912	somatic	0	0.56881868383433	0.795908110938128
4	151623142	151673500	2	neutral	AA	54.5678	somatic	0	0.128306546633211	0.186704071783738
4	155829234	156059442	2	neutral	AA	87.0878	somatic	0	0.0217597436486514	0.0612934836926177
4	159483786	159586900	2	neutral	AA	36.2681	somatic	0	0.440982587404981	0.779102384156574
4	160126450	160150430	1	loss	A	-1	germline	1	4.38364512100973e-08	4.20525603228583e-09
4	162088014	162138372	2	neutral	AA	100	somatic	0	0.482635018497911	0.530784335069123
4	165080718	165085514	1	loss	A	-1	germline	1	0.0143686168109779	0.0368169615398009
4	166663398	166668194	1	loss	A	-1	somatic	0	0.0143872144432745	0.0368242799098457
4	171452204	171459398	1	loss	A	-1	germline	1	0.0143166748192683	0.0366543163945806
4	173480912	173485708	1	loss	A	-1	somatic	0	0.0150094715607608	0.0387539836883923
4	177809302	177998744	2	neutral	AA	27.1423	somatic	0	0.00461238589163143	0.0196147708294674
4	185518872	185523668	1	loss	A	-1	somatic	0	0.0143837549861634	0.0368594821499171
4	186171128	186178322	1	loss	A	-1	somatic	0	0.00321169178813346	0.00669777532172877
5	414854	417252	4	gain	AABB	35.8294	germline	1	0.0832769009206551	0.27005842500748
5	417252	426844	2	neutral	AA	22.6627	somatic	0	0.959416171107362	0.968867118801767
5	3321230	3323628	2	neutral	AA	35.195	somatic	0	0.694214533227623	0.845949425456834
5	3323628	3326026	3	gain	AAB	36.0247	germline	1	0.0832839785193578	0.270070716686378
5	32106822	32166772	3	gain	AAB	10.4314	somatic	0	1.00334530768599e-16	0
5	35881274	35905254	2	neutral	AA	100	somatic	0	0.0871034959310668	0.371238536420009
5	36538326	36567102	2	neutral	AA	18.2703	somatic	0	0.508302116145997	0.771801670937017
5	42626848	42631644	1	loss	A	-1	germline	1	0.0143625468032172	0.0367986711808134
5	45370160	45377354	1	loss	A	-1	germline	1	0.00271167701114771	0.00498279139792057
5	49600232	49602630	226	gain	-	-1	germline	1	0.0832651060055408	0.270037939783456
5	58026804	58038794	1	loss	A	-1	germline	1	0.000112703585589463	0.00010040918356391
5	60705370	60707768	0	loss	-	-1	somatic	0	0.0832662854361513	0.270039988254808
5	60815678	60942772	2	neutral	AA	27.6409	somatic	0	0.840680605819184	0.853374984477024
5	65992960	66122452	2	neutral	AA	54.6587	somatic	0	0.273483221376812	0.338323444575128
5	66482152	67163184	2	neutral	AA	100	somatic	0	0.0364923421663713	0.262619715168861
5	76153286	76158082	2	neutral	AA	100	somatic	0	0.263722197271663	0.263014559216254
5	106089918	106104306	2	neutral	AA	100	somatic	0	0.912891871904832	0.846769284530969
5	110137742	110152130	3	gain	AAB	4.64376	germline	1	2.23592794469233e-05	1.27435701635648e-05
5	110797192	110816376	2	neutral	AA	100	somatic	0	0.086267464346893	0.375402448224878
5	118051142	118058336	1	loss	A	-1	germline	1	0.00271891893004131	0.00499990619798729
5	118537936	118545130	1	loss	A	-1	somatic	0	0.0143341878594133	0.0366958307088117
5	121089408	121132572	1	loss	A	-1	germline	1	2.06326038012474e-13	4.44089209850063e-16
5	125614434	125616832	0	loss	-	-1	germline	1	0.0832662854361513	0.270039988254808
5	135777158	135784352	1	loss	A	-1	somatic	0	0.00301374712525793	0.00602285325136631
5	137518106	137520504	0	loss	-	-1	somatic	0	0.0832674648802952	0.270042036737509
5	140844132	140858520	1	loss	A	-1	germline	1	0.000108582377559143	9.16413803870864e-05
5	155344838	155368818	2	neutral	AA	54.5678	somatic	0	0.473352371547378	0.701244393437462
5	156049850	156061840	1	loss	A	-1	germline	1	0.000108204244499839	9.1415670716577e-05
5	157735644	157742838	2	neutral	AA	100	somatic	0	0.524653581496108	0.880641180064459
5	160179206	160184002	2	neutral	AA	100	somatic	0	0.199323684118966	0.290620580760914
5	173082844	173097232	2	neutral	AA	100	somatic	0	0.277893148947957	0.337281185229959
5	178583856	178586254	6	gain	AAAABB	16.6782	germline	1	0.083269234071886	0.270045109482834
5	178684572	178686970	0	loss	-	-1	germline	1	0.0832662854361513	0.270039988254808
5	180950682	181003438	1	loss	A	-1	germline	1	4.67189584228137e-16	0
6	256586	294954	3	gain	-	-1	germline	1	1.98309014146745e-11	1.88737914186277e-13
6	294954	381282	4	gain	-	-1	germline	1	2.53824761659383e-23	0
6	381282	383680	3	gain	-	-1	germline	1	0.0833046242987494	0.270106569749009
6	32488104	32528870	1	loss	A	-1	somatic	0	4.37788003446923e-12	2.66453525910038e-14
6	32555248	32667954	1	loss	A	-1	somatic	0	1.83133614402957e-11	2.75913736302869e-11
6	33970068	33974864	1	loss	A	-1	somatic	0	0.0143426717012312	0.0367000405356519
6	35785354	35799742	3	gain	-	-1	germline	1	2.23005586267849e-05	1.25824907932781e-05
6	54062910	54070104	1	loss	A	-1	somatic	0	0.00272236716313809	0.00500747902553333
6	61477526	61479924	5	gain	-	-1	germline	1	0.0832698238091829	0.270046133736945
6	76728806	76743194	1	loss	A	-1	germline	1	0.000534761936448312	0.000673640247478291
6	78256332	78328272	1	loss	A	-1	germline	1	2.53082681305494e-21	0
6	80575198	80584790	1	loss	A	-1	germline	1	0.000537543254046459	0.000682910884869714
6	103289054	103315432	1	loss	A	-1	germline	1	4.38310066075957e-08	4.19995416223173e-09
6	105900476	105907670	2	neutral	AA	100	somatic	0	0.510926934627866	0.848536006550074
6	120624196	120667360	2	neutral	AA	54.8482	somatic	0	0.291889729817552	0.356758066455646
6	121722480	121724878	2	neutral	AA	100	somatic	0	0.254655996755776	0.498093540878261
6	122662496	122684078	2	neutral	AA	100	somatic	0	0.630108629939974	0.338209933457319
6	125861428	125866224	0	loss	-	-1	germline	1	0.0143062504926871	0.036631893338082
6	126688738	126820628	2	neutral	AA	100	somatic	0	0.495407050575005	0.794967189334804
6	129470418	129475214	2	neutral	AA	100	somatic	0	0.82327512169762	0.989664832981909
6	132662156	133292830	2	neutral	AA	18.2929	somatic	0	0.292652187995839	0.0772665205693902
6	151186706	151191502	1	loss	A	-1	germline	1	0.0143395946314967	0.0366969532879904
6	157308800	157311198	9	gain	AAAAAABBB	4.03232	germline	1	0.0832674648802952	0.270042036737514
6	157313596	157315994	5	gain	AAABB	5.49322	germline	1	0.0832715930413744	0.270049206516295
6	162498072	162548430	2	neutral	AA	54.5792	somatic	0	0.548807594753874	0.608878413815066
6	165310926	165320518	1	loss	A	-1	germline	1	0.0143773055259629	0.0368459610097074
6	166150226	166190992	2	neutral	AA	100	somatic	0	0.154619220547201	0.266144870961578
6	166943964	166955954	2	neutral	AA	36.3786	somatic	0	0.668403186395575	0.962322475769615
7	721798	784146	2	neutral	AA	5.58724	somatic	0	0.940067475709008	0.870890273206685
7	9762258	9767054	1	loss	A	-1	somatic	0	0.014395913076066	0.0368992256031707
7	20277488	20279886	0	loss	-	-1	somatic	0	0.0832698238091829	0.27004613373694
7	26097434	26107026	1	loss	A	-1	germline	1	0.000543741084864173	0.000703387614896078
7	26658566	26725710	2	neutral	AA	100	somatic	0	0.658274104437947	0.597101015653309
7	31274716	31279512	1	loss	A	-1	germline	1	0.0143245906100906	0.0366865705768913
7	36109084	36159442	2	neutral	AA	100	somatic	0	0.098940593229743	0.0460408465248962
7	51525826	51528224	0	loss	-	-1	germline	1	0.083272182792205	0.270050230781745
7	57451284	57482458	2	neutral	AA	70.8008	somatic	0	0.398508270023474	0.466306240578834
7	57482458	61961922	2	neutral	AA	0.349485	somatic	0	2.17968020371272e-17	3.32289751270309e-13
7	61961922	62441522	3	gain	AAB	0.650098	somatic	0	2.12064020594562e-10	1.12171383293003e-11
7	62441522	62448716	3	gain	AAB	12.7782	germline	1	0.00448951774774281	0.0123295972301795
7	64909064	64945034	2	neutral	AA	27.2841	somatic	0	0.158084075166775	0.367673171626975
7	65796324	65822702	4	gain	AABB	0.109917	germline	1	9.23219073181489e-09	5.58892043756032e-10
7	67434158	67438954	2	neutral	AA	100	germline	1	0.145418795003859	0.298177809595811
7	67736306	67743500	2	neutral	AA	100	somatic	0	0.166662655897336	0.251272497849049
7	68153558	68165548	2	neutral	AA	4.19753	somatic	0	0.703970031365355	0.316659268298365
7	68436522	68470094	2	neutral	AA	21.1758	somatic	0	0.0118719314052221	0.061928636061067
7	70954422	70961616	1	loss	A	-1	germline	1	0.0143274785061825	0.0366952694304888
7	74074220	74174936	2	neutral	AA	50.3535	germline	1	5.4898606760197e-05	0.000298419025597463
7	74412338	74417134	1	loss	A	-1	germline	1	0.0143359588452863	0.0367210960084672
7	100034968	100351504	2	neutral	AA	10.5697	somatic	0	0.020492688759044	0.0144468405410639
7	100730388	100739980	1	loss	A	-1	germline	1	0.000534097470454614	0.000673496012415065
7	100948606	100955800	3	gain	AAB	0.700557	germline	1	0.00270407923682231	0.00496726874236042
7	100955800	100960596	9	gain	AAAAABBBB	8.26141	germline	1	0.0143069018168853	0.0366330142058021
7	100960596	100970188	4	gain	AABB	0.291735	germline	1	0.000532797085752261	0.000672507751627638
7	101145242	101284326	2	neutral	AA	6.9168	somatic	0	0.000287149294104874	0.000888737435867593
7	102061278	102073268	2	neutral	AA	36.3786	somatic	0	0.0292456745711067	0.217749759133408
7	105384906	105396896	2	neutral	AA	54.5678	somatic	0	0.00205130756873758	0.0111271265433959
7	113401420	113415808	2	neutral	AA	100	somatic	0	0.447045447129235	0.629731702774084
7	124803910	124820696	2	neutral	AA	55.0709	somatic	0	0.0534408567016564	0.12867848292655
7	134098558	134112946	1	loss	A	-1	germline	1	2.23219985664102e-05	1.25842217133521e-05
7	141527562	141920834	2	neutral	AA	29.8199	somatic	0	0.000119209137721419	0.00661746118340267
7	143846428	143851224	4	gain	AAAB	17.0698	germline	1	0.0143082975996789	0.036634975796515
7	152400094	152402492	4	gain	AAAA	45.3473	germline	1	0.0832804396591013	0.270064570795883
7	152402492	152407288	9	gain	AAAAAAABB	1.34116	germline	1	0.0143068087689698	0.0366324537681919
7	154599060	154608652	1	loss	A	-1	germline	1	0.000541688878245686	0.00069487419872849
7	158150498	158152896	4	gain	AABB	6.10188	somatic	0	0.0832786702746521	0.27006149788892
7	158594128	158596526	4	gain	AAAA	30.7263	germline	1	0.0832727725464191	0.270051255050041
8	642664	649858	1	loss	A	-1	germline	1	0.0143768382729	0.0368437079082129
8	4263644	4268440	1	loss	A	-1	germline	1	0.0143759972511386	0.036792763687043
8	5736016	5748006	1	loss	A	-1	germline	1	0.000108891603478343	9.31419041310111e-05
8	6112502	6114900	0	loss	-	-1	germline	1	0.0832656957191544	0.270038964017711
8	9529652	9551234	2	neutral	AA	100	somatic	0	0.153903600779025	0.241025274486743
8	22601150	22737836	2	neutral	AA	43.176	somatic	0	0.0101986402916116	0.0392692807856757
8	25090274	25114254	2	neutral	AA	100	somatic	0	0.447354352916061	0.508988287755752
8	25114254	25116652	0	loss	-	-1	germline	1	0.0832704135498634	0.270047157993888
8	25207776	25214970	1	loss	A	-1	germline	1	0.0144343172125453	0.0369678076104323
8	25723346	25730540	3	gain	AAB	4.28166	germline	1	0.0027123238056928	0.00498925321095278
8	29006208	29056566	2	neutral	AA	36.3786	somatic	0	0.0509437292467264	0.0345190282457724
8	30250770	30255566	2	neutral	AA	54.5678	somatic	0	0.933853918342611	0.986443622040403
8	31936564	31991718	2	neutral	AA	49.577	somatic	0	0.328461783964007	0.136561854030649
8	32344224	32353816	2	neutral	AA	100	somatic	0	0.0366968625306634	0.071174199465979
8	33315414	33320210	1	loss	A	-1	somatic	0	0.0397647741165785	0.119300138061251
8	34190684	34224256	2	neutral	AA	100	somatic	0	0.852312112524616	0.675307419475969
8	35032382	35051566	2	neutral	AA	27.2839	somatic	0	0.559999423668878	0.846502538850127
8	38073046	38077842	1	loss	A	-1	somatic	0	0.0146279809456103	0.0375955253326806
8	38202538	38207334	2	neutral	AA	54.5679	somatic	0	0.473600332899193	0.858680740296409
8	39375160	39528632	1	loss	A	-1	germline	1	5.29450335545665e-41	0
8	40917074	40924268	1	loss	A	-1	somatic	0	0.00280277877376175	0.00527340162736112
8	41183252	41190446	2	neutral	AA	35.409	somatic	0	0.582717140796812	0.929314683596821
8	42331894	42336690	1	loss	A	-1	germline	1	0.0143915164132501	0.0367609899852208
8	43235940	43238338	6	gain	AAAABB	8.49265	germline	1	0.083269234071886	0.270045109482834
8	43238338	43240736	9	gain	AAAAAABBB	2.04417	germline	1	0.0832674648802952	0.270042036737514
8	43240736	43243134	6	gain	AAAABB	2.11756	germline	1	0.083269234071886	0.270045109482834
8	54823076	54861444	2	neutral	AA	100	somatic	0	0.000259645875401017	0.00012087055031218
8	55453750	55484924	2	neutral	AA	100	somatic	0	0.0599493299941641	0.147566665428481
8	71553922	71565912	2	neutral	AA	36.3786	somatic	0	0.730649647697298	0.746930074530206
8	73856002	73860798	2	neutral	AA	100	somatic	0	0.445383334669317	0.616096232041381
8	74450706	74455502	1	loss	A	-1	somatic	0	0.0144113575500302	0.0368938679181008
8	76553752	76556150	2	neutral	AA	100	somatic	0	0.602367016101961	0.791417804404006
8	78297098	78345058	2	neutral	AA	100	somatic	0	0.446579231150078	0.510204620710535
8	88347116	88351912	2	neutral	AA	100	somatic	0	0.152295801710014	0.237930735853719
8	88807532	88833910	2	neutral	AA	100	somatic	0	0.0223520890188461	0.0186447791552837
8	90992110	91133592	2	neutral	AA	54.5678	somatic	0	0.00170687807659025	0.00435384846963993
8	97409158	97449924	2	neutral	AA	28.2813	somatic	0	0.676816089367798	0.675316946070804
8	103574416	103687122	2	neutral	AA	50.4761	somatic	0	0.778785153510655	0.666967505057746
8	114012910	114070462	2	neutral	AA	100	somatic	0	0.065738313210433	0.138096864795886
8	114981702	115010478	2	neutral	AA	100	somatic	0	0.0728814258632708	0.183817216359317
8	132969100	132973896	2	neutral	AA	100	somatic	0	0.74493550813976	0.849964078989951
8	135379090	136230380	2	neutral	AA	23.9797	germline	1	0.601054852332313	0.406903555943216
8	138935324	139048030	2	neutral	AA	60.4746	somatic	0	0.814548759528963	0.750562368707305
9	6939812	6966190	2	neutral	AA	54.5687	somatic	0	0.0479893732566178	0.0511218087246452
9	14963520	15047450	2	neutral	AA	58.101	somatic	0	0.0642124610650128	0.101014297286879
9	22495638	22502832	1	loss	A	-1	germline	1	0.00274657384122374	0.00509608367149317
9	25493138	25514720	2	neutral	AA	54.5678	somatic	0	0.157372028305753	0.326576957702822
9	27394752	27421130	2	neutral	AA	100	somatic	0	0.310147527584794	0.3352195701674
9	28596150	28600946	2	neutral	AA	100	somatic	0	0.667749669962944	0.965446707902038
9	29708822	29739996	2	neutral	AA	36.3795	somatic	0	0.26866153455525	0.490843618332423
9	33795014	33802208	2	neutral	AA	1.81798	somatic	0	0.0059253730266031	0.0186383162023926
9	36264954	36269750	2	neutral	AA	100	somatic	0	0.419773692708612	0.877574786006756
9	39015460	39017858	3	gain	AAB	8.64824	somatic	0	0.0832881073436157	0.270077887020986
9	40869114	40873910	4	gain	AABB	3.66302	somatic	0	0.0143083906561359	0.036634975796515
9	40912278	40914676	6	gain	-	-1	germline	1	0.083269234071886	0.270045109482834
9	40921870	40924268	5	gain	AAABB	7.85293	germline	1	0.0832698238091829	0.270046133736945
9	40924268	40929064	6	gain	AAAABB	1.08239	germline	1	0.0143073670644703	0.0366332944274202
9	42387048	42389446	5	gain	AAABB	22.8883	germline	1	0.0832698238091829	0.270046133736945
9	69122350	69129544	1	loss	A	-1	somatic	0	0.00276007797561008	0.00508239067236771
9	73040682	73076652	2	neutral	AA	100	somatic	0	0.857175065811592	0.853071736410099
9	73402780	73412372	1	loss	A	-1	germline	1	0.000533857530959109	0.000673393005095835
9	74549024	74556218	2	neutral	AA	100	somatic	0	0.532764610669374	0.630566472032785
9	77606474	77899030	2	neutral	AA	19.2967	somatic	0	0.0174295382771745	0.0126891408056993
9	81716646	81728636	2	neutral	AA	54.5678	somatic	0	0.0899606123989736	0.157229658257652
9	85287268	85306452	2	neutral	AA	9.92142	somatic	0	0.29436159282528	0.608972345550884
9	86539024	86541422	1	loss	A	-1	germline	1	0.0832827988857376	0.270068668044864
9	87980222	88035376	2	neutral	AA	50.1555	somatic	0	0.0268711633412692	0.0355924999200503
9	92665914	92723466	2	neutral	AA	42.6691	somatic	0	0.00691157984697442	0.0226591198959371
9	95406828	95524330	2	neutral	AA	95.5639	germline	1	0.640249636252282	0.774935990343644
9	101953368	101962960	1	loss	A	-1	germline	1	0.000547120373442895	0.00071164065535223
9	103013284	103015682	0	loss	-	-1	germline	1	0.0832662854361513	0.270039988254808
9	105890884	105912466	2	neutral	AA	100	germline	1	0.385606307838102	0.672755234583427
9	112941004	112957790	2	neutral	AA	37.1526	somatic	0	0.811767620787063	0.981739717647363
9	115818604	115828196	3	gain	AAB	15.5893	germline	1	0.000533272893983586	0.000672682657028911
9	124580896	124612070	2	neutral	AA	54.5678	germline	1	0.207443437524265	0.2356787304459
9	127432118	127484874	2	neutral	AA	71.7915	somatic	0	0.200843656051988	0.0658151643251054
9	129424856	129441642	3	gain	AAB	0.873764	germline	1	4.63090174706586e-06	1.68170252556887e-06
9	129926038	129940426	2	neutral	AA	36.3803	somatic	0	0.0615284504765397	0.0803719800205909
9	129997978	130002774	2	neutral	AA	54.5777	somatic	0	0.121704222806174	0.351609706830043
9	130729368	130755746	2	neutral	AA	36.3935	somatic	0	0.200363642035177	0.474074116978432
9	136160838	136168032	1	loss	A	-1	somatic	0	0.00279493938246697	0.0052101240460386
9	136232778	136249564	2	neutral	AA	79.5412	somatic	0	0.0968107216941063	0.134933230612495
9	136894626	136906616	2	neutral	AA	17.1727	germline	1	0.146596158154587	0.500119199086102
9	137285500	137302286	1	loss	A	-1	somatic	0	0.00189603207045815	0.0105903121347705
9	137326266	137328664	5	gain	AAABB	4.60401	somatic	0	0.0832715930413744	0.270049206516295
9	137355042	137357440	3	gain	AAB	15.6387	somatic	0	0.0832869276626233	0.270075838339776
9	137357440	137362236	1	loss	A	-1	germline	1	0.0143746890813161	0.0368346967073958
9	137494126	137534892	2	neutral	AA	20.8419	somatic	0	0.898013611897862	0.962152284954141
10	38526268	38528666	17	gain	-	-1	germline	1	0.0832668751565316	0.270041012494746
10	38574228	38581422	4	gain	-	-1	germline	1	0.00277222708387017	0.00520114138364158
10	39257658	39267250	1	loss	A	-1	germline	1	0.00271206847521918	0.0049751957292925
10	39343986	39360772	1	loss	A	-1	germline	1	0.000109648992590247	9.50041549911962e-05
10	41835508	41842702	2	neutral	AA	16.4374	somatic	0	0.109604692299627	0.296329037719548
10	41857090	41914642	25	gain	AAAAAAAAAAAAAAAAABBBBBBBB	4.94593	germline	1	9.6353784232115e-07	2.25118561791859e-07
10	42300720	42322302	3	gain	AAB	5.40481	germline	1	1.8025992770089e-06	1.76398724216487e-06
10	46514006	46559568	4	gain	AABB	0.480955	germline	1	2.00994840127091e-13	4.44089209850063e-16
10	48533122	48535520	2	neutral	AA	100	somatic	0	0.264102823986362	0.508240988192972
10	50947908	51000664	2	neutral	AA	38.8596	somatic	0	0.0183334924349854	0.0363806805629663
10	52254818	52259614	1	loss	A	-1	germline	1	0.0143274785061825	0.0366658128646996
10	54691186	54753534	2	neutral	AA	54.5722	somatic	0	0.452041228342835	0.571916826821813
10	56753466	56767854	1	loss	A	-1	germline	1	2.22572681424705e-05	1.23906332502033e-05
10	59957194	59966786	2	neutral	AA	54.5678	somatic	0	0.649855301633622	0.959335134044219
10	64127316	64182470	2	neutral	AA	37.3222	somatic	0	0.229198145131235	0.145576597676695
10	65546932	65556524	1	loss	A	-1	germline	1	0.000536591540789441	0.000679693163394224
10	68160752	68175140	2	neutral	AA	100	somatic	0	0.35773430244796	0.640610081117815
10	68539636	68544432	2	neutral	AA	100	somatic	0	0.542248932412832	0.68520218336856
10	69215872	69227862	2	neutral	AA	100	somatic	0	0.891407428345229	0.997581299667667
10	69520418	69532408	1	loss	A	-1	germline	1	0.000111093045992518	9.81767485231932e-05
10	70529976	70532374	2	neutral	AA	100	somatic	0	0.97522688482523	0.95794112202882
10	74457900	74465094	2	neutral	AA	54.5678	somatic	0	0.881330597193547	0.997779784918116
10	80045240	80121976	2	neutral	AA	100	somatic	0	0.973637423410672	0.645024103359544
10	82707020	82726204	2	neutral	AA	54.5678	somatic	0	0.000834774790549199	0.00257211477822072
10	84004338	84016328	2	neutral	AA	100	somatic	0	0.725424377636923	0.578900989364753
10	86191314	86200906	1	loss	A	-1	germline	1	0.000541385832004329	0.000686803588666351
10	86421522	86443104	2	neutral	AA	54.5678	germline	1	0.254034190928005	0.395475582800337
10	90661186	90677972	2	neutral	AA	100	somatic	0	0.349676557592407	0.249715993338873
10	93296588	93303782	2	neutral	AA	49.3443	somatic	0	0.739843956314227	0.483689929436642
10	94737786	94800134	1	loss	A	-1	germline	1	2.19549659572707e-15	0
10	95692190	95860050	2	neutral	AA	36.4209	somatic	0	0.0474882505725185	0.0607356817342422
10	96437968	96720932	2	neutral	AA	21.1339	somatic	0	0.000104149812542046	0.000528915986518275
10	98569790	98632138	2	neutral	AA	36.7286	somatic	0	0.659774342375354	0.900882798764716
10	99490622	99507408	2	neutral	AA	54.5787	somatic	0	0.255862261970089	0.340918990083233
10	100099714	100111704	2	neutral	AA	54.5678	somatic	0	0.363118506516646	0.474655790677373
10	103368188	103437730	2	neutral	AA	100	somatic	0	0.321362114318983	0.32132188257236
10	105360926	105387304	2	neutral	AA	100	somatic	0	0.163214761170332	0.0957797531762264
10	106711000	106739776	2	neutral	AA	100	germline	1	0.214296763279491	0.423001369437416
10	118849676	118907228	2	neutral	AA	93.302	germline	1	0.488623967564401	0.938348477439555
10	120465928	120470724	1	loss	A	-1	germline	1	0.0143435110031431	0.0367351388609259
10	126278680	126281078	2	neutral	AA	100	somatic	0	0.125195782226303	0.336630602516552
10	126511286	126554450	2	neutral	AA	54.5873	somatic	0	0.460759808425565	0.490677588507476
10	130539926	130736562	2	neutral	AA	18.2842	germline	1	0.140989232788144	0.184689068022174
10	132362406	132364804	4	gain	AABB	17.1141	germline	1	0.0832774907019372	0.270059449298458
10	133009866	133012264	4	gain	AAAA	15.0301	somatic	0	0.0832833887008559	0.270069692364206
11	4947074	4954268	1	loss	A	-1	germline	1	0.00270931230518149	0.00496835160381526
11	5762394	5788772	1	loss	A	-1	germline	1	9.58222351008724e-09	6.18588513745522e-10
11	18922618	18941802	1	loss	A	-1	germline	1	9.76710198641627e-07	2.29639291693395e-07
11	28984626	28991820	1	loss	A	-1	germline	1	0.0143119271971267	0.0366475882170417
11	42794708	42797106	0	loss	-	-1	germline	1	0.0832651060055408	0.270037939783451
11	48578684	48581082	0	loss	-	-1	germline	1	0.0832680546074421	0.270043060983113
11	48835270	48842464	1	loss	A	-1	somatic	0	0.00276056231267156	0.00506466918095272
11	50175752	50178150	0	loss	-	-1	germline	1	0.0832656957191544	0.270038964017711
11	54755932	54777514	1	loss	A	-1	germline	1	9.75855351392023e-07	2.28924112777307e-07
11	55118030	55122826	1	loss	A	-1	somatic	0	0.0143348403054396	0.036688534676442
11	58153898	58197062	2	neutral	AA	36.9794	somatic	0	0.0387886821998071	0.0779676766807491
11	62153762	62228100	2	neutral	AA	64.2282	somatic	0	0.548695783894674	0.951649356845248
11	62808416	62825202	2	neutral	AA	54.5678	somatic	0	0.00664661366272597	0.0072899574042693
11	63424702	63429498	3	gain	AAB	7.14809	germline	1	0.0143127649118692	0.0366422625095054
11	64712428	64767582	2	neutral	AA	33.2778	somatic	0	0.24392434778304	0.039090191428538
11	67685948	67779470	2	neutral	AA	7.83604	somatic	0	0.686852912453712	0.797295525592585
11	70369310	70371708	3	gain	AAB	11.0375	somatic	0	0.0832898768904828	0.270080960064071
11	73290074	73297268	2	neutral	AA	54.5678	somatic	0	0.0292216466503011	0.0384491545862039
11	75496234	75501030	2	neutral	AA	100	somatic	0	0.197521004608256	0.3273155077547
11	78522510	78536898	2	neutral	AA	100	germline	1	0.00842220707158728	0.0175864215345475
11	81788586	81807770	1	loss	A	-1	germline	1	9.74832808186725e-07	2.29793829409353e-07
11	87975426	87977824	1	loss	A	-1	germline	1	0.0832745418293621	0.270054327871923
11	93286996	93296588	1	loss	A	-1	germline	1	0.000534627007316251	0.000675621252373082
11	93948844	93956038	1	loss	A	-1	somatic	0	0.00274695268407453	0.00507826027512459
11	102727922	102732718	2	neutral	AA	5.28003	somatic	0	0.286757041721906	0.699626421773117
11	104461676	104500044	2	neutral	AA	22.4379	somatic	0	0.420454242207021	0.17718601164058
11	106708602	106711000	1	loss	A	-1	somatic	0	0.0832745418293621	0.270054327871923
11	108401590	108408784	2	neutral	AA	36.3786	somatic	0	0.359604773251751	0.433018610152822
11	112358290	112394260	2	neutral	AA	36.4066	somatic	0	0.641439932158395	0.916655048049164
11	114883384	114916956	2	neutral	AA	54.7072	somatic	0	0.710660247376287	0.686755188436212
11	117924048	117943232	2	neutral	AA	55.0562	somatic	0	0.073780910094646	0.19773105413101
11	123808740	123897466	2	neutral	AA	100	germline	1	0.0834118667273162	0.00647512223109081
11	125707956	125895000	2	neutral	AA	100	somatic	0	0.555223376787144	0.801686903178895
11	127453700	127468088	2	neutral	AA	100	somatic	0	0.657540835700821	0.629120325413987
11	132021890	132053064	2	neutral	AA	45.3735	somatic	0	0.0537651061898316	0.0109480549852448
11	132053064	132055462	3	gain	AAB	91.8786	germline	1	0.0833111138284371	0.270117838571894
11	132055462	132060258	4	gain	AABB	27.0345	germline	1	0.0143084837131269	0.036634975796515
12	757768	764962	1	loss	A	-1	germline	1	0.00270824115263033	0.00497000480954068
12	1575486	1589874	2	neutral	AA	100	somatic	0	0.864335760415864	0.989080668515082
12	1625844	1633038	2	neutral	AA	100	somatic	0	0.29430910391452	0.490901260197681
12	1904012	1908808	2	neutral	AA	61.9129	somatic	0	0.140785496161623	0.192301804318336
12	2254120	2256518	6	gain	AAAABB	14.1811	germline	1	0.083269234071886	0.270045109482834
12	9807820	9898944	2	neutral	AA	19.3395	somatic	0	0.648699025811596	0.969625832098769
12	11522390	11527186	2	neutral	AA	100	somatic	0	0.90934678277729	0.816969194616986
12	19327880	19373442	2	neutral	AA	100	somatic	0	0.0206967537346637	0.0103908937202424
12	20929744	20941734	2	neutral	AA	54.5678	somatic	0	0.328517283681999	0.816934718581634
12	23418868	23426062	2	neutral	AA	100	somatic	0	0.172005518435748	0.294257417872621
12	25119050	25202980	2	neutral	AA	69.0454	somatic	0	0.00179120982079315	0.00685219598246567
12	34193082	34250634	2	neutral	AA	100	somatic	0	0.967193988682988	0.822438271565835
12	37260124	37267318	3	gain	-	-1	germline	1	0.00270134744656754	0.00495986549234928
12	37267318	37715744	3	gain	AAB	1.19027	somatic	0	1.71696692782826e-68	0
12	37715744	37720540	3	gain	AAB	-1	germline	1	NA	NA
12	37720540	37722938	10	gain	AAAAAAAAAB	73.0557	germline	1	0.0832674648802952	0.270042036737514
12	37722938	37725336	5	gain	AAABB	85.8046	germline	1	0.0832698238091829	0.270046133736945
12	37725336	37739724	3	gain	AAB	3.83524	germline	1	0.000107715314638005	9.09432242935937e-05
12	37739724	37993912	3	gain	AAB	0.364381	germline	1	2.65538273808888e-61	0
12	37993912	38001106	3	gain	AAB	13.7937	germline	1	0.00270282331803581	0.00496134533271264
12	45113574	45118370	2	neutral	AA	100	somatic	0	0.483183654528463	0.491397336219003
12	45514040	45516438	0	loss	-	-1	germline	1	0.0832662854361513	0.270039988254808
12	45516438	45533224	2	neutral	AA	100	somatic	0	0.956704547680267	0.982782011034512
12	47902448	48314904	2	neutral	AA	60.7708	germline	1	0.21871622721633	0.338375026016781
12	48314904	48317302	0	loss	-	-1	germline	1	0.0832662854361513	0.270039988254808
12	48317302	49070274	2	neutral	AA	30.4118	germline	1	0.833401036009151	0.694178802575522
12	50540248	50561830	2	neutral	AA	100	somatic	0	0.0126259133614188	0.00238940322534553
12	52281196	52439464	2	neutral	AA	10.5423	germline	1	0.0107609660749865	0.0320897850755056
12	56472900	56576014	2	neutral	AA	23.8421	somatic	0	0.000325301716941028	0.00120206587571858
12	57633532	57635930	1	loss	A	-1	somatic	0	0.0832792600660849	0.270062522188401
12	58508802	58547170	2	neutral	AA	100	somatic	0	0.0819933839251773	0.361693283793723
12	59484788	59597494	2	neutral	AA	3.22281	somatic	0	0.0434155147376348	0.0927682086597875
12	65388664	65561320	2	neutral	AA	62.6287	somatic	0	0.0952582151180088	0.34647632803545
12	67614008	67745898	2	neutral	AA	54.0941	somatic	0	0.266397240777086	0.279368806466968
12	70477220	70484414	1	loss	A	-1	germline	1	0.00277386860475796	0.005179842179453
12	72378834	72383630	2	neutral	AA	27.2839	somatic	0	0.0598604274133737	0.147765652228606
12	73131806	75577766	2	neutral	AA	7.21098	somatic	0	2.01528017434441e-09	4.5801463666173e-07
12	78987722	78994916	2	neutral	AA	54.5678	somatic	0	0.772041057543718	0.847114941336922
12	90092860	90097656	1	loss	A	-1	germline	1	0.0143377300241593	0.036722219263809
12	92711476	92752242	2	neutral	AA	21.5213	somatic	0	0.693079871527508	0.880466448777219
12	97737684	97744878	2	neutral	AA	100	somatic	0	0.396613823583121	0.703914468822682
12	98291622	98857550	2	neutral	AA	34.9042	somatic	0	0.434676194900295	0.775565174829489
12	101711170	101713568	0	loss	-	-1	somatic	0	0.0832662854361513	0.270039988254808
12	102370620	102399396	2	neutral	AA	46.1562	somatic	0	0.194916523040343	0.190921773057698
12	102514500	102538480	2	neutral	AA	20.7117	somatic	0	0.70659047361103	0.782132261907817
12	105099544	105109136	2	neutral	AA	100	somatic	0	0.421882985173224	0.656709392271295
12	109156960	109171348	2	neutral	AA	100	somatic	0	0.0145530271783231	0.0395045547855384
12	114945732	114950528	2	neutral	AA	54.5681	somatic	0	0.89049676107528	0.975272867382072
12	119427594	119482748	2	neutral	AA	21.8286	somatic	0	0.518235373856716	0.180944617279221
12	120926344	120928742	0	loss	-	-1	germline	1	0.0832662854361513	0.270039988254808
12	121792022	121823196	2	neutral	AA	54.5678	somatic	0	0.0399843851001351	0.0376435208317241
12	124859064	124863860	2	neutral	AA	100	somatic	0	0.488793624905458	0.40776450377619
12	124947790	124962178	2	neutral	AA	54.5678	somatic	0	0.040722779241408	0.0974425069163923
12	125588056	125763110	2	neutral	AA	16.1191	somatic	0	0.0903645835607062	0.124296234088861
12	130645438	130647836	5	gain	AAABB	3.6294	germline	1	0.0832704135498634	0.270047157993893
12	131436778	131508718	2	neutral	AA	31.6906	somatic	0	0.201158561454067	0.164948492047263
13	22018436	22023232	1	loss	A	-1	germline	1	0.0143342810643848	0.0367157609560717
13	26471522	26478716	1	loss	A	-1	somatic	0	0.00295565851454089	0.00575667729770146
13	32202742	32212334	2	neutral	AA	54.5678	somatic	0	0.402078210103225	0.389831023495818
13	43461352	43588446	2	neutral	AA	58.3748	somatic	0	0.074805146263859	0.177549200141434
13	45422916	45425314	0	loss	-	-1	germline	1	0.0832715930413744	0.27004920651629
13	46600334	46655488	2	neutral	AA	27.284	somatic	0	0.383498821809456	0.517491113704765
13	48957568	48962364	1	loss	A	-1	somatic	0	0.0157368927942526	0.0409335182342674
13	50494686	50499482	1	loss	A	-1	germline	1	0.0143450964693988	0.0367357006727334
13	52782378	52789572	1	loss	A	-1	germline	1	0.00283620766934815	0.00536098477787506
13	55731918	55758296	2	neutral	AA	100	somatic	0	0.803778924182766	0.941545236460403
13	59978776	59983572	2	neutral	AA	100	somatic	0	0.539050909852638	0.479990230836248
13	63029032	63043420	3	gain	AAB	0.593784	germline	1	0.000107759200061291	9.09762720869844e-05
13	63057808	63065002	3	gain	AAB	0.714114	germline	1	0.00270160185461658	0.00496003622250851
13	63065002	63067400	5	gain	AAABB	1.02643	germline	1	0.0832698238091829	0.270046133736945
13	63067400	63069798	3	gain	AAB	1.66609	germline	1	0.0833111138284371	0.270117838571894
13	70247012	70263798	2	neutral	AA	54.5791	somatic	0	0.0806142698044011	0.182698572059315
13	77930204	77970970	2	neutral	AA	100	somatic	0	0.742764200661206	0.953752625967197
13	81431284	81469652	2	neutral	AA	100	somatic	0	0.178433788418579	0.542952697029921
13	82591916	82599110	1	loss	A	-1	germline	1	0.00272303337111454	0.00500478143565142
13	94944014	95109476	2	neutral	AA	100	somatic	0	0.206360155397509	0.137812064501931
13	95627444	96725728	2	neutral	AA	53.2251	somatic	0	0.292906856054286	0.362499921555719
13	98071006	98226876	2	neutral	AA	48.2001	somatic	0	2.08710133855473e-05	2.20088089086801e-06
13	98600964	98605760	1	loss	A	-1	germline	1	0.0143585325027596	0.0367747650132074
13	109020274	109025070	1	loss	A	-1	somatic	0	0.0146293094201039	0.0375511176764888
13	109216910	109219308	1	loss	A	-1	germline	1	0.0832886971891877	0.27007891136584
13	113823468	113825866	3	gain	AAB	27.2423	somatic	0	0.0832969553824996	0.27009325249164
13	113825866	113828264	2	neutral	AA	36.3787	germline	1	0.20596642115216	0.442677957796126
13	114125616	114154392	2	neutral	AA	21.9009	somatic	0	0.0734030278311154	0.163606648994644
13	114154392	114156790	1	loss	A	-1	germline	1	0.0832774907019372	0.270059449298453
14	0	16092978	3	gain	AAB	-1	germline	1	NA	NA
14	16092978	16095376	10	gain	-	-1	germline	1	0.0832674648802952	0.270042036737514
14	16095376	18680420	3	gain	AAB	-1	somatic	0	0.135679554559358	0.448033090913616
14	18694808	19728346	3	gain	AAB	-1	somatic	0	NA	NA
14	19728346	19941768	3	gain	AAB	0.554698	germline	1	7.07680874979717e-30	0
14	19948962	19953758	3	gain	AAB	4.036	germline	1	0.0143244974607016	0.0366649715526097
14	20236722	20239120	1	loss	A	-1	somatic	0	0.0833211439070596	0.270135254700394
14	25694570	25742530	2	neutral	AA	100	somatic	0	0.097704603816376	0.0367066169186877
14	27406742	27423528	2	neutral	AA	36.3818	somatic	0	0.659074336043901	0.980749815794662
14	30433018	30445008	2	neutral	AA	36.3786	somatic	0	0.541501003496707	0.200616425344369
14	31152418	31224358	2	neutral	AA	100	germline	1	0.0115166035133404	0.0117552446698621
14	31377830	31397014	2	neutral	AA	100	somatic	0	0.890447554576588	0.891572679399148
14	31579262	31586456	2	neutral	AA	100	germline	1	0.986484472417144	0.894437010689885
14	32994082	33013266	2	neutral	AA	27.8907	somatic	0	0.677587134335386	0.735707678566778
14	34346554	34351350	1	loss	A	-1	germline	1	0.0144922810492111	0.0371852941587227
14	35946020	35948418	3	gain	AAB	13.3346	germline	1	0.0832869276626233	0.270075838339776
14	39049032	39327200	2	neutral	AA	100	somatic	0	3.35564348312341e-09	3.93629313588661e-08
14	40147316	40149714	1	loss	A	-1	germline	1	0.0833766220005471	0.270231570441749
14	41063352	41080138	2	neutral	AA	54.5706	somatic	0	0.673467127393674	0.932183756093712
14	42518938	42523734	1	loss	A	-1	somatic	0	0.014337263905743	0.0366888152696018
14	45657920	45715472	2	neutral	AA	54.5679	somatic	0	0.398961564014385	0.774122341472923
14	47425246	47430042	2	neutral	AA	100	somatic	0	0.854323329026951	0.896261790578716
14	50422746	50439532	2	neutral	AA	100	somatic	0	0.44223996099893	0.487481371532407
14	52528190	52530588	1	loss	A	-1	germline	1	0.0832916464678045	0.270084033132674
14	56875764	56882958	2	neutral	AA	100	somatic	0	0.553024473394384	0.873659722308227
14	58247420	58331350	2	neutral	AA	100	somatic	0	0.529478510239959	0.788482716708924
14	59748568	59750966	1	loss	A	-1	somatic	0	0.0832886971891877	0.27007891136584
14	62614178	62623770	2	neutral	AA	100	somatic	0	0.125844504028452	0.359742922173593
14	65861070	65887448	2	neutral	AA	36.3786	somatic	0	0.000669155058426232	5.76303827887203e-05
14	67021702	67055274	2	neutral	AA	21.8932	germline	1	0.121683315869242	0.140907971903934
14	69105564	69201484	2	neutral	AA	36.3786	somatic	0	0.596274029607582	0.737082268976627
14	69549194	69556388	1	loss	A	-1	germline	1	0.00275125244817294	0.00508471901217011
14	78416998	78460162	2	neutral	AA	100	germline	1	0.0580988493716172	0.158312325954826
14	79639978	79649570	1	loss	A	-1	germline	1	0.000538499852624335	0.000678893551294024
14	82030784	82037978	1	loss	A	-1	germline	1	0.0144181483781833	0.0369378774816063
14	85224920	85275278	2	neutral	AA	100	somatic	0	0.31500729071778	0.239142298716158
14	86001872	86006668	2	neutral	AA	100	germline	1	0.676970160936338	0.908744660579337
14	87932262	87944252	2	neutral	AA	100	somatic	0	0.684597979389756	0.890655246527531
14	90694758	90709146	2	neutral	AA	100	somatic	0	0.252368190889685	0.374658067312433
14	97358800	97370790	2	neutral	AA	100	somatic	0	0.332064805537786	0.425728711541916
14	99927058	99929456	5	gain	AAABB	6.00085	germline	1	0.0832698238091829	0.270046133736945
14	101711170	101723160	2	neutral	AA	100	somatic	0	0.0335258414432998	0.0821700246923148
14	101723160	101725558	1	loss	A	-1	germline	1	0.0832833887008559	0.2700696923642
14	101780712	101783110	1	loss	A	-1	somatic	0	0.0833211439070596	0.270135254700394
14	105329752	105358528	2	neutral	AA	11.2143	somatic	0	0.622227495537525	0.628563713506769
15	0	17080954	8	gain	-	-1	germline	1	NA	NA
15	17080954	17083352	13	gain	-	-1	germline	1	0.0832668751565316	0.270041012494746
15	17083352	20308662	8	gain	-	-1	germline	1	0.902108903658278	0.645383224498313
15	20308662	20311060	7	gain	-	-1	germline	1	0.083269234071886	0.270045109482834
15	20311060	20339836	8	gain	-	-1	germline	1	NA	NA
15	20339836	20342234	19	gain	-	-1	germline	1	0.0832662854361513	0.270039988254813
15	20342234	20418970	8	gain	-	-1	germline	1	4.32263652255269e-08	4.12419964845867e-09
15	20646780	20668362	6	gain	-	-1	germline	1	9.63790530471792e-07	2.25153005350975e-07
15	20668362	20670760	4	gain	-	-1	germline	1	0.0832727725464191	0.270051255050041
15	20670760	20673158	6	gain	-	-1	germline	1	0.083269234071886	0.270045109482834
15	22224664	22272624	5	gain	AAABB	2.32971	germline	1	9.63939876182203e-07	2.25180563862004e-07
15	24869658	24874454	1	loss	A	-1	somatic	0	0.0144449176372485	0.0370447065209769
15	25996718	26003912	2	neutral	AA	100	germline	1	0.874565046572495	0.946901884533231
15	34437678	34519210	1	loss	A	-1	germline	1	5.48698319780907e-22	0
15	35866886	35869284	1	loss	A	-1	somatic	0	0.0832981351785443	0.270095301269266
15	47938418	48178218	2	neutral	AA	100	somatic	0	1.45531693626371e-05	0.00189839778181555
15	49633804	49657784	2	neutral	AA	36.5459	somatic	0	0.191855272703509	0.310067260737226
15	49947942	49952738	2	neutral	AA	100	somatic	0	0.988346547769438	0.876542875908223
15	59705404	59743772	2	neutral	AA	22.0155	somatic	0	0.716597604152437	0.969492593911138
15	62628566	62633362	2	neutral	AA	100	somatic	0	0.863367095945507	0.855056776548686
15	64772378	64805950	2	neutral	AA	100	somatic	0	0.38899818603044	0.0744879159391665
15	66638022	66654808	2	neutral	AA	54.5678	somatic	0	0.466694000637109	0.640936422825474
15	68736272	68748262	2	neutral	AA	100	somatic	0	0.015669597646094	0.0106898129110112
15	69345364	69386130	2	neutral	AA	15.5078	somatic	0	0.3920282707193	0.278918213770302
15	71417236	71422032	1	loss	A	-1	somatic	0	0.014380015857867	0.0367888258187842
15	72093472	72095870	0	loss	-	-1	germline	1	0.0832656957191544	0.270038964017711
15	75877516	75903894	2	neutral	AA	100	somatic	0	0.420579077400512	0.592417056956613
15	76592120	76601712	1	loss	A	-1	somatic	0	0.00271428206913446	0.00497747902418277
15	77038148	77040546	0	loss	-	-1	germline	1	0.0832662854361513	0.270039988254808
15	87359140	87416692	2	neutral	AA	100	somatic	0	0.0749022562165653	0.104328350663712
15	91430944	91438138	2	neutral	AA	100	somatic	0	0.415618499640583	0.922629517215814
15	91438138	91440536	0	loss	-	-1	germline	1	0.0832662854361513	0.270039988254808
16	35970	40766	2	neutral	AA	27.2839	somatic	0	0.854452879626169	0.647388044735187
16	846494	848892	4	gain	AABB	89.0958	germline	1	0.0832739520649976	0.27005330359513
16	1023946	1026344	5	gain	AAABB	16.4578	germline	1	0.0832704135498634	0.270047157993893
16	6484192	6498580	2	neutral	AA	36.5691	somatic	0	0.120144723680028	0.105989851737456
16	6709604	6728788	2	neutral	AA	54.5678	somatic	0	0.537389403225021	0.755257547289973
16	19934574	19953758	1	loss	A	-1	germline	1	9.74350944090902e-07	2.28735162144389e-07
16	20884182	20888978	2	neutral	AA	100	somatic	0	0.0952572209160355	0.181291466706088
16	21558020	21582000	4	gain	AABB	4.40751	germline	1	4.32639811977347e-08	4.12972422925151e-09
16	22615538	22622732	4	gain	AABB	18.1534	germline	1	0.00270114393589033	0.00495929643072357
16	22622732	22697070	4	gain	AAAB	3.07563	somatic	0	2.39274436359979e-21	0
16	22697070	22699468	4	gain	AABB	19.5395	germline	1	0.0832786702746521	0.27006149788892
16	28603344	28605742	4	gain	-	-1	germline	1	0.0832774907019372	0.270059449298458
16	29003810	29020596	2	neutral	AA	100	somatic	0	0.499152245733486	0.859615373923247
16	29660862	29675250	2	neutral	AA	54.6208	somatic	0	0.00864131280830423	0.0142337708043443
16	34061192	34065988	15	gain	AAAAAAAAAABBBBB	2.93218	germline	1	0.0143066226747403	0.0366324537681919
16	34068386	34082774	2	neutral	AA	13.6584	germline	1	0.007839006984961	0.0340269688437008
16	34082774	34087570	7	gain	AAAAAAA	19.2104	germline	1	0.0143071809638348	0.0366332944274202
16	34087570	34094764	2	neutral	AA	20.2089	somatic	0	0.348850097741014	0.585251666429485
16	34094764	34099560	7	gain	AAAAABB	4.7712	germline	1	0.0143070879143178	0.0366332944274202
16	34099560	34159510	2	neutral	AA	2.88681	germline	1	0.263332945436795	0.320745806920438
16	34159510	34161908	2	neutral	AA	-1	germline	1	NA	NA
16	34161908	34164306	4	gain	AABB	0.778331	germline	1	0.0832786702746521	0.27006149788892
16	34164306	34193082	2	neutral	AA	-1	somatic	0	NA	NA
16	34193082	34958044	2	neutral	AA	0.937049	somatic	0	1.48677194140497e-19	5.55111512312578e-16
16	35231416	35454430	3	gain	AAB	5.52887	germline	1	2.55770308172207e-59	0
16	35454430	35456828	3	gain	-	-1	germline	1	0.0833305848745681	0.270151647099455
16	35456828	35523972	3	gain	AAB	8.61541	germline	1	4.76773360566983e-18	0
16	35993980	36123472	2	neutral	AA	47.1178	germline	1	5.25717875610496e-05	0.00506990121831785
16	36123472	36125870	5	gain	-	-1	germline	1	0.0832704135498634	0.270047157993893
16	46401300	46403698	50	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	9.83809	germline	1	0.0832651060055408	0.270037939783456
16	46403698	46466046	2	neutral	AA	0.540652	germline	1	2.1590950382111e-05	3.81753119093053e-05
16	50720098	50830406	2	neutral	AA	79.9442	somatic	0	9.9211903886482e-05	0.000631700603110574
16	65321520	65323918	0	loss	-	-1	germline	1	0.0832662854361513	0.270039988254808
16	66527714	66587664	2	neutral	AA	100	somatic	0	0.413561460326729	0.284400547415675
16	68096006	68098404	2	neutral	AA	100	somatic	0	0.738547259651399	0.869090679114957
16	70151092	70163082	4	gain	AABB	2.52816	germline	1	0.000107571985871791	9.08476239049882e-05
16	78181994	78196382	2	neutral	AA	54.5678	somatic	0	0.604267203787002	0.974020287202503
16	78337864	78349854	1	loss	A	-1	germline	1	0.000107948034069123	9.11347118583983e-05
16	80990052	81141126	2	neutral	AA	21.0264	somatic	0	0.167881323686335	0.330892727313697
17	21289444	21303832	4	gain	AABB	0.329671	germline	1	2.21147430654158e-05	1.23095924484673e-05
17	21852974	21857770	5	gain	-	-1	germline	1	0.0143080184335108	0.036634975796515
17	21884148	21968078	1	loss	A	-1	germline	1	1.19940299672494e-19	0
17	21968078	21977670	24	gain	-	-1	germline	1	0.0143064365826461	0.0366318933380834
17	21977670	22155122	7	gain	AAAAABB	0.561661	germline	1	9.24680634576105e-13	3.44169137633799e-15
17	22157520	22159918	4	gain	AABB	13.4858	germline	1	0.0832769009206551	0.27005842500748
17	26773670	26809640	3	gain	-	-1	germline	1	1.72998216807957e-08	2.68808580949909e-08
17	26809640	26828824	4	gain	-	-1	germline	1	4.90472289311617e-06	2.21915579134979e-06
17	26828824	26879182	3	gain	-	-1	germline	1	5.96749480284292e-14	3.23074900165921e-14
17	26936734	26939132	14	gain	AAAAAAAAABBBBB	4.07058	germline	1	0.0832668751565316	0.270041012494746
17	27802412	27826392	2	neutral	AA	100	somatic	0	0.265745314740544	0.78682259769722
17	29754384	29910254	2	neutral	AA	36.514	somatic	0	0.0117552959746242	0.0111564975386687
17	44571626	44744282	2	neutral	AA	89.5012	somatic	0	0.0174451166360359	0.0171477872503988
17	46907278	46919268	2	neutral	AA	100	somatic	0	0.745609060820633	0.965728926326293
17	53775150	53782344	1	loss	A	-1	germline	1	0.00270735731823831	0.00496743970610081
17	55743908	55748704	2	neutral	AA	100	somatic	0	0.558110353764964	0.883258150607227
18	2026310	2033504	2	neutral	AA	54.5755	somatic	0	0.823767097066772	0.938157538504769
18	2793670	2796068	2	neutral	AA	100	somatic	0	0.326770663723433	0.571907152639513
18	3146176	3150972	2	neutral	AA	36.4329	germline	1	0.338816534264406	0.815634481975711
18	3896750	3901546	2	neutral	AA	54.5678	somatic	0	0.692131556293371	0.769684799541112
18	5572952	5604126	2	neutral	AA	100	somatic	0	0.717687268864887	0.787182186192647
18	10855746	10918094	2	neutral	AA	33.9643	somatic	0	0.602844728243622	0.609417858349992
18	12061940	12117094	2	neutral	AA	9.85792	somatic	0	0.0388381444178289	0.0726741601754745
18	13877226	13889216	2	neutral	AA	54.568	somatic	0	0.28483338719283	0.67555933681195
18	24011174	24042348	2	neutral	AA	54.5679	somatic	0	0.898829600743955	0.997213077793754
18	24162248	24167044	2	neutral	AA	100	somatic	0	0.0356397549514207	0.08128007579264
18	25562680	25663396	2	neutral	AA	33.3161	somatic	0	0.147792900470165	0.184054107027844
18	29593718	29598514	1	loss	A	-1	somatic	0	0.014577861454724	0.0373936266313385
18	30488172	30492968	1	loss	A	-1	somatic	0	0.0165340501875986	0.0433519882889102
18	32619994	32687138	2	neutral	AA	12.1745	somatic	0	0.0199843598709844	0.075463798933708
18	33418528	33459294	2	neutral	AA	37.6822	somatic	0	0.0232811515519674	0.0211388071632824
18	35552748	35557544	2	neutral	AA	100	somatic	0	0.600547919277264	0.789874073371432
18	37749316	37814062	2	neutral	AA	10.157	somatic	0	0.950238585089181	0.972270846269413
18	39130564	39173728	2	neutral	AA	100	germline	1	0.266070909584809	0.580497128801548
18	39732462	39744452	2	neutral	AA	36.519	somatic	0	0.154621130136179	0.114579922877721
18	40260022	40307982	2	neutral	AA	100	somatic	0	0.066828311744236	0.123910789400301
18	40679672	40686866	1	loss	A	-1	germline	1	0.00271602004460138	0.00499011155096207
18	41283968	41288764	0	loss	-	-1	germline	1	0.0143077392721475	0.0366358165063804
18	41346316	41351112	1	loss	A	-1	somatic	0	0.0152896931698647	0.0394786343141281
18	41478206	41497390	2	neutral	AA	27.284	somatic	0	0.900672436877663	0.999606921677318
18	44077638	44080036	1	loss	A	-1	somatic	0	0.0833789834340102	0.270235669539806
18	50168558	50173354	1	loss	A	-1	somatic	0	0.0145543226868845	0.0373440127396828
18	51449090	51451488	1	loss	A	-1	somatic	0	0.0835113101915569	0.270465291457626
18	53427440	53429838	1	loss	A	-1	somatic	0	0.0833783930705658	0.270234644761037
18	54676798	54729554	2	neutral	AA	100	somatic	0	0.0523994804965539	0.0345545050183332
18	55614416	55619212	2	neutral	AA	100	somatic	0	0.40569942342065	0.363104400885904
18	57396130	57415314	2	neutral	AA	100	somatic	0	0.679623334493943	0.96765795417398
18	62475094	62501472	2	neutral	AA	100	somatic	0	0.457427594137088	0.839839531410187
18	64544568	64546966	1	loss	A	-1	germline	1	0.08333353535461	0.270156769873044
18	65064934	65103302	2	neutral	AA	36.9316	somatic	0	0.77477141780559	0.953263691937559
18	65532544	65539738	4	gain	AAAB	33.1366	germline	1	0.00270129656758477	0.00495980858349332
18	65997756	66055308	2	neutral	AA	52.6773	somatic	0	0.0692336225950632	0.0838254083908284
18	66055308	66057706	1	loss	A	-1	germline	1	0.0833252742237291	0.270142426285647
18	66877822	67067264	2	neutral	AA	22.5458	somatic	0	0.0369663090123755	0.0207005886786285
18	68364582	68400552	2	neutral	AA	36.3841	germline	1	0.718758564381785	0.936871940723157
18	69105564	69127146	2	neutral	AA	36.3841	somatic	0	0.132416878524361	0.109487057406438
18	70589926	70597120	2	neutral	AA	100	germline	1	0.475217666595188	0.456593045998509
18	71170242	71369276	2	neutral	AA	88.1506	somatic	0	0.0065329403107054	0.0575788323677699
18	71901632	71930408	2	neutral	AA	54.5704	somatic	0	0.0652356231434787	0.258099692897292
18	73203746	73227726	2	neutral	AA	21.9891	somatic	0	0.305543218476981	0.210024780504893
18	74407542	74433920	2	neutral	AA	100	somatic	0	0.105576470344298	0.0170954437060461
18	74616168	74618566	3	gain	-	-1	somatic	0	0.0833111138284371	0.270117838571894
18	76280380	76292370	2	neutral	AA	100	somatic	0	0.190633948127361	0.120308549239061
18	77251570	77261162	2	neutral	AA	40.3922	somatic	0	0.086412584491034	0.0967383411065795
18	77553718	77556116	1	loss	A	-1	germline	1	0.0833766220005471	0.270231570441749
18	77556116	77599280	2	neutral	AA	36.4212	somatic	0	0.665111806781188	0.600619769076329
18	77774334	77781528	2	neutral	AA	100	somatic	0	0.230305232122318	0.152360418005036
18	79520078	79522476	1	loss	A	-1	germline	1	0.0832792600660849	0.270062522188401
18	79862992	79867788	1	loss	A	-1	somatic	0	0.0144626628958112	0.0369068403263461
19	261382	263780	2	neutral	AA	100	somatic	0	0.11393825393886	0.319815819963285
19	1534720	1563496	2	neutral	AA	49.8668	somatic	0	0.00892548578541307	0.0267729176285481
19	3834402	3879964	2	neutral	AA	15.7049	somatic	0	0.0031978485965933	0.00847007317087856
19	7124458	7129254	2	neutral	AA	100	somatic	0	0.588644774408011	0.880122060748111
19	7301910	7333084	2	neutral	AA	21.6301	somatic	0	0.005580465271961	0.0122693813450316
19	7448188	7450586	3	gain	AAB	10.3348	germline	1	0.0832881073436157	0.270077887020986
19	7450586	7452984	7	gain	AAAABBB	32.7487	germline	1	0.0832686443379723	0.270044085231558
19	8882192	8910968	2	neutral	AA	1.07783	germline	1	0.749765355369279	0.611051174482496
19	9162758	9174748	1	loss	A	-1	germline	1	0.000109539160004111	9.27495383719057e-05
19	13879624	13925186	2	neutral	AA	54.5678	somatic	0	0.0673275829556117	0.137650153990354
19	20560452	20586830	2	neutral	AA	27.3001	germline	1	0.138680683734595	0.270423420342106
19	21100002	21131176	2	neutral	AA	54.5679	germline	1	0.0879172848583595	0.256103871390926
19	21560418	21565214	2	neutral	AA	1.17488	germline	1	0.7921482454746	0.787568229518359
19	21565214	21577204	3	gain	AAB	3.73709	somatic	0	0.000555818130949323	0.000728308809030076
19	21577204	21586796	2	neutral	AA	1.16978	germline	1	0.0112547828134792	0.0272929131195515
19	23855304	23857702	2	neutral	AA	100	somatic	0	0.865727187929815	0.924023168627105
19	24330108	24382864	4	gain	AABB	0.435493	germline	1	4.52187358151591e-16	0
19	27337200	27346792	3	gain	AAB	1.10462	germline	1	0.0277553164549124	0.0222293098577199
19	27346792	27380364	6	gain	AAAABB	0.152224	germline	1	1.97463396760479e-09	7.55512319372542e-11
19	27380364	27382762	2	neutral	AA	8.55782	germline	1	0.236475738605	0.478009410020942
19	27382762	27387558	6	gain	AAAABB	0.824114	germline	1	0.0143073670644703	0.0366332944274202
19	27387558	27399548	6	gain	AAAABB	1.66347	germline	1	0.000107545172638674	9.08233045087137e-05
19	29150088	29171670	2	neutral	AA	54.6094	somatic	0	0.20789154378244	0.259794359963007
19	31893400	31929370	2	neutral	AA	54.5678	somatic	0	0.871733139778189	0.933452743526046
19	34068386	34077978	2	neutral	AA	100	somatic	0	0.0150972152212041	0.0477678189264759
19	35360908	35370500	1	loss	A	-1	germline	1	0.000535216321331605	0.000675373328441031
19	44756272	44804232	2	neutral	AA	31.6549	somatic	0	4.62565336911717e-05	5.13890273357021e-05
19	47981582	47986378	2	neutral	AA	27.2839	somatic	0	0.79425637469146	0.966912745233803
19	48621848	48756136	2	neutral	AA	8.60449	somatic	0	0.00306205734042563	0.0106040499262257
19	50729690	50741680	2	neutral	AA	54.5679	somatic	0	0.336842878974569	0.200373015461395
19	53393868	53417848	2	neutral	AA	100	somatic	0	0.015258446628934	0.0265237316920912
19	53868672	53943010	2	neutral	AA	100	germline	1	0.00162886288386382	0.00259491786717059
19	58307370	58352932	2	neutral	AA	17.924	somatic	0	0.133946794027611	0.290505449474611
20	59950	67144	6	gain	-	-1	germline	1	0.0143074601155889	0.036633574650914
20	26315652	26322846	1	loss	A	-1	germline	1	0.0143216100946488	0.0366666541936809
20	28773602	28787990	7	gain	-	-1	germline	1	0.00270016049843379	0.00495798781610501
20	28802378	28804776	4	gain	-	-1	germline	1	0.0832727725464191	0.270051255050041
20	28804776	28823960	10	gain	-	-1	germline	1	4.59411281803957e-06	1.6635250232877e-06
20	29262794	29265192	10	gain	-	-1	germline	1	0.0832674648802952	0.270042036737514
20	29265192	29279580	4	gain	-	-1	somatic	0	0.000107810967233643	9.13056324410855e-05
20	29279580	29286774	3	gain	-	-1	germline	1	0.00298346878761351	0.0058834314157088
20	29286774	29305958	4	gain	-	-1	germline	1	4.59857214698967e-06	1.66561957837263e-06
20	29305958	29365908	3	gain	-	-1	germline	1	0.000108185830803912	9.20257746542807e-05
20	29409072	29411470	5	gain	-	-1	germline	1	0.0832704135498634	0.270047157993893
20	29876682	29879080	9	gain	-	-1	germline	1	0.0832674648802952	0.270042036737514
20	29886274	29888672	4	gain	-	-1	germline	1	0.0832827988857376	0.270068668044869
20	29891070	29893468	8	gain	-	-1	germline	1	0.0832686443379723	0.270044085231558
20	30938996	30943792	5	gain	-	-1	germline	1	0.0143078323254014	0.0366344153326481
20	31066090	31068488	51	gain	-	-1	germline	1	0.0832651060055408	0.270037939783456
20	31162010	31164408	3	gain	-	-1	germline	1	0.0835695523344827	0.270566821494855
20	31164408	31166806	5	gain	-	-1	germline	1	0.0832698238091829	0.270046133736945
20	31166806	31183592	3	gain	-	-1	germline	1	6.66078761915364e-06	7.85618785015263e-06
20	31183592	31188388	19	gain	-	-1	germline	1	0.0143064365826461	0.0366318933380834
20	31188388	31190786	5	gain	-	-1	germline	1	0.0832715930413744	0.270049206516295
20	31190786	31241144	3	gain	-	-1	germline	1	4.68397927485193e-06	1.76651204431e-06
20	31241144	31243542	65	gain	-	-1	germline	1	0.0832651060055408	0.270037939783456
20	36746952	36845270	2	neutral	AA	21.1593	somatic	0	0.0932827222467751	0.0958036923042637
20	38603004	38653362	2	neutral	AA	29.3208	somatic	0	0.542593854262717	0.595855493210993
20	44132792	44135190	1	loss	A	-1	somatic	0	0.0832804396591013	0.270064570795878
20	46079968	46096754	2	neutral	AA	100	somatic	0	0.023002317500805	0.0219393601909104
20	51645726	51667308	2	neutral	AA	36.3786	germline	1	0.0655207652455057	0.0340848827005563
20	59168252	59201824	2	neutral	AA	54.5723	somatic	0	0.393571290721651	0.428782150688235
20	60959558	60969150	2	neutral	AA	15.6154	somatic	0	0.586632400347205	0.815118898561177
20	61045886	61048284	4	gain	AABB	7.26314	germline	1	0.0832727725464191	0.270051255050041
20	63316792	63367150	2	neutral	AA	9.46873	somatic	0	0.86199926265359	0.983981199249737
21	0	10520026	5	gain	AAAAB	-1	germline	1	4.24099551969708e-10	1.02255981460075e-11
21	10520026	10522424	4	gain	AABB	12.1269	germline	1	0.0832833887008559	0.270069692364206
21	10522424	10637528	5	gain	AAAAB	-1	germline	1	NA	NA
21	10637528	10690284	5	gain	AAAAB	1.46085	germline	1	4.26699551902224e-12	2.53130849614536e-14
21	10690284	10692682	12	gain	AAAAAAAAAAAA	33.3369	germline	1	0.0832668751565316	0.270041012494746
21	10692682	10695080	54	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBB	100	germline	1	0.0832651060055408	0.270037939783456
21	10695080	10702274	5	gain	AAAAB	36.7228	germline	1	0.00270031307934919	0.00495815848701586
21	10702274	10755030	6	gain	AAAABB	0.706341	germline	1	4.26669588276017e-12	2.53130849614536e-14
21	13934778	13937176	2	neutral	AA	100	germline	1	0.159612769740766	0.384531783329329
21	14699740	14706934	2	neutral	AA	100	somatic	0	0.99781800578856	0.65277434986754
21	20586830	20589228	1	loss	A	-1	somatic	0	0.0832727725464191	0.270051255050036
21	21123982	21147962	2	neutral	AA	37.0434	somatic	0	0.00773127322477862	0.0446372049851357
21	21697104	21843382	2	neutral	AA	81.2683	somatic	0	0.0781715385740974	0.0131228092527906
21	23529176	23699434	2	neutral	AA	88.885	somatic	0	0.000728327002067758	0.00300143264320285
21	24394854	24435620	2	neutral	AA	100	somatic	0	0.854748344683298	0.619741505907729
21	28464260	28466658	2	neutral	AA	100	somatic	0	0.32034799835429	0.565668755407347
21	34058794	34061192	2	neutral	AA	100	germline	1	0.52535611637671	0.738773906595438
21	34500026	34512016	2	neutral	AA	100	somatic	0	0.00251001063917574	0.016789437724916
21	35061158	35104322	2	neutral	AA	27.2844	somatic	0	0.815564514363292	0.891051645158732
21	37612630	37617426	2	neutral	AA	36.3786	somatic	0	0.056123058970413	0.140988548427465
21	39746850	39751646	2	neutral	AA	54.5728	germline	1	0.113702789399365	0.349580622419951
21	41473410	41475808	1	loss	A	-1	germline	1	0.0832798498609012	0.270063546490722
21	41804334	41806732	3	gain	AAA	10.5244	germline	1	0.0832845683412435	0.270071741011385
21	41806732	41859488	2	neutral	AA	100	somatic	0	0.338659549265198	0.682896981781629
21	43262318	43264716	4	gain	-	-1	germline	1	0.0832727725464191	0.270051255050041
21	45885730	45931292	2	neutral	AA	52.1809	somatic	0	0.415398463105724	0.75717136282682
22	0	10726254	3	gain	AAB	-1	germline	1	NA	NA
22	10726254	10731050	9	gain	-	-1	germline	1	0.0143069018168853	0.0366327339860592
22	10731050	10781408	3	gain	AAB	-1	germline	1	NA	NA
22	10781408	10783806	7	gain	-	-1	germline	1	0.083269234071886	0.270045109482834
22	10783806	11213048	3	gain	AAB	-1	germline	1	NA	NA
22	11213048	11215446	5	gain	-	-1	germline	1	0.0832698238091829	0.270046133736945
22	11215446	11217844	3	gain	AAB	-1	germline	1	NA	NA
22	11220242	11366520	3	gain	AAB	-1	somatic	0	NA	NA
22	11366520	11368918	5	gain	-	-1	somatic	0	0.0832698238091829	0.270046133736945
22	11368918	11625504	3	gain	AAB	-1	somatic	0	0.0832910566053134	0.27008300877364
22	11625504	11630300	4	gain	AABB	24.8611	germline	1	0.0143092281882742	0.0366372177270042
22	11630300	16565384	3	gain	AAB	-1	somatic	0	3.43659940842732e-05	6.05506217938867e-05
22	16565384	16814776	3	gain	AAB	2.49393	germline	1	9.57749893156477e-15	0
22	16814776	16819572	3	gain	AAB	12.9698	germline	1	0.0143354927776611	0.0366921825339696
22	17529380	17536574	2	neutral	AA	36.3786	somatic	0	0.252807425969653	0.249315943934756
22	17853110	17879488	2	neutral	AA	1.99507	somatic	0	1.67972972339093e-06	1.36211067347514e-06
22	18730778	18733176	0	loss	-	-1	germline	1	0.0832651060055408	0.270037939783451
22	27658532	27689706	2	neutral	AA	36.3915	somatic	0	0.00985503861421792	0.0509367651463584
22	29118914	29121312	4	gain	AAAB	20.012	germline	1	0.0832786702746521	0.27006149788892
22	31373034	31432984	2	neutral	AA	100	somatic	0	0.00359514122742004	0.0162009884706802
22	34519210	34576762	2	neutral	AA	71.0767	somatic	0	0.312012899090491	0.635961399025086
22	34576762	34579160	1	loss	A	-1	somatic	0	0.083842871287198	0.27103996896118
22	35598310	35631882	2	neutral	AA	100	somatic	0	0.999562776948665	0.586089655779223
22	36504754	36509550	2	neutral	AA	100	somatic	0	0.168924985233541	0.252904989166176
22	36746952	36751748	1	loss	A	-1	germline	1	0.0143355859901169	0.0367140763435725
22	37348850	37353646	1	loss	A	-1	germline	1	0.0144182889078694	0.0368482142317286
22	44374990	44382184	2	neutral	AA	100	somatic	0	0.890231729829879	0.956124036891391
22	44883366	44897754	2	neutral	AA	100	somatic	0	0.982182574324867	0.677300648032831
22	45326996	45329394	4	gain	AABB	8.0028	germline	1	0.0832727725464191	0.270051255050041
22	46617120	46650692	2	neutral	AA	13.851	somatic	0	0.826456941626534	0.375237854490579
22	46960034	46984014	2	neutral	AA	100	somatic	0	0.1347712334601	0.095411156153413
22	46984014	47096720	3	gain	AAB	0.449892	somatic	0	1.64877198074377e-32	0
22	47096720	47115904	3	gain	AAB	23.4586	somatic	0	9.66182737044304e-07	2.25905144479732e-07
22	48621848	48643430	2	neutral	AA	91.9039	somatic	0	0.882365368072191	0.999651004672254
22	49209358	49226144	2	neutral	AA	31.3116	somatic	0	0.643108650012615	0.86294390778966
22	49346044	49353238	2	neutral	AA	100	somatic	0	0.159124745370367	0.289157884171826
22	49669774	49676968	2	neutral	AA	54.5678	somatic	0	0.812937431688721	0.976948141695145
22	49983912	49995902	2	neutral	AA	100	somatic	0	0.143107313589681	0.196975744244512
X	15927516	16011446	2	neutral	AA	100	somatic	0	0.00551764344548954	0.0235997595641203
X	23744996	23759384	2	neutral	AA	100	somatic	0	0.0201399683845681	0.0790451823790148
X	30018164	30020562	0	loss	-	-1	somatic	0	0.0832680546074421	0.270043060983113
X	38626984	38725302	3	gain	AAB	31.0553	germline	1	7.48079327035652e-28	0
X	38727700	38730098	1	loss	A	-1	germline	1	0.0834031912505398	0.270277687911243
X	38730098	38773262	3	gain	AAB	68.4929	germline	1	2.0287313525346e-13	4.44089209850063e-16
X	46492424	46502016	2	neutral	AA	100	somatic	0	0.591809907331721	0.738811529847256
X	50561830	50595402	2	neutral	AA	100	somatic	0	0.765920458563738	0.672119866772121
X	58489618	58499210	1	loss	A	-1	germline	1	0.00270905723375403	0.00496909263369205
X	63252046	63285618	3	gain	AAB	25.2769	germline	1	9.31174157744157e-09	5.84194914665659e-10
X	70242216	70249410	3	gain	AAB	18.1883	germline	1	0.00270501303540423	0.00496402145589014
X	70556354	70587528	2	neutral	AA	100	somatic	0	0.294559734436087	0.520222369790664
X	84903588	84932364	2	neutral	AA	54.5679	somatic	0	0.640567563741817	0.342787570230478
X	119739334	119744130	1	loss	A	-1	germline	1	0.0143552657795177	0.0367781391777137
X	126777464	126779862	0	loss	-	-1	germline	1	0.0832662854361513	0.270039988254808
X	155560658	155567852	1	loss	A	-1	germline	1	0.00271600300069197	0.0049852494132554
