chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	5669268	5675192	4	gain	-	-1	somatic	0	0.0143212870741652	0.0366597924437888
1	16604972	16637554	6	gain	-	-1	germline	1	0.000107667943996716	9.08932150293085e-05
1	16720490	16723452	4	gain	-	-1	germline	1	0.0833031326257163	0.270103858895869
1	16904134	16942640	3	gain	-	-1	germline	1	2.05954274736262e-07	3.13645499572246e-08
1	31429782	31432744	5	gain	-	-1	somatic	0	0.083300946409958	0.270100062504346
1	55661904	55667828	0	loss	-	-1	somatic	0	0.0143064530181867	0.0366320911491006
1	105473858	105482744	1	loss	A	-1	somatic	0	0.00272939482419614	0.00504938022001244
1	109644354	109650278	1	loss	A	-1	somatic	0	0.0143383227021231	0.0367284319760274
1	125067488	125073412	3	gain	-	-1	somatic	0	0.0143243935930897	0.0366597924437888
1	125079336	125082298	12	gain	-	-1	germline	1	0.0832761725460666	0.270057039455783
1	125082298	125085260	6	gain	-	-1	germline	1	0.0832929306831385	0.270086142735319
1	125150424	125156348	4	gain	-	-1	somatic	0	0.014318986332195	0.0366521727613077
1	125156348	125162272	3	gain	-	-1	germline	1	0.0146975748872759	0.0376959324632578
1	125162272	125165234	6	gain	-	-1	germline	1	0.0832929306831385	0.270086142735319
1	151393744	151438174	2	neutral	AA	54.5679	germline	1	0.418811226879492	0.622297767234431
1	152581506	152614088	1	loss	A	-1	germline	1	9.37377047642368e-09	5.89853166310661e-10
1	158333710	158345558	2	neutral	AA	100	somatic	0	0.0838914607173711	0.213546594369004
1	158446266	158555860	2	neutral	AA	26.0537	somatic	0	0.7234704359355	0.407926727946754
1	158994236	159077172	2	neutral	AA	100	somatic	0	0.878635903884933	0.70811620693199
1	159488890	159494814	2	neutral	AA	100	somatic	0	0.422694689307527	0.849985854045675
1	159965772	159977620	2	neutral	AA	54.5678	somatic	0	0.583650361822182	0.805462596798491
1	165507674	165558028	2	neutral	AA	100	somatic	0	0.0998850625217245	0.0984510090900627
1	169257566	169272376	1	loss	A	-1	somatic	0	0.000107870284200806	9.12115217193143e-05
1	176304164	176327860	2	neutral	AA	100	somatic	0	0.521900378601739	0.624148239317598
1	176390062	176428568	2	neutral	AA	100	somatic	0	0.40481112305127	0.41253956344371
1	183590684	183632152	2	neutral	AA	100	germline	1	0.425598688474671	0.6460095535573
1	187746370	187755256	1	loss	A	-1	somatic	0	0.00281364464815553	0.00531475686713112
1	197787550	197855676	2	neutral	AA	54.5678	somatic	0	0.488964048695838	0.215090808356134
1	199570674	199576598	1	loss	A	-1	somatic	0	0.0143760256212225	0.0368117821255751
1	200930232	200942080	2	neutral	AA	100	somatic	0	0.6733346205982	0.824287693138815
1	209194212	209217908	2	neutral	AA	100	somatic	0	0.722401993387182	0.895996332085792
1	209905092	209911016	1	loss	A	-1	somatic	0	0.0143446580639251	0.036728778925496
1	222200354	222206278	1	loss	A	-1	somatic	0	0.0143291120362349	0.0366705316214503
1	223100802	223109688	2	neutral	AA	100	germline	1	0.463877546364297	0.597937087093704
1	225962094	226012448	2	neutral	AA	100	somatic	0	0.927094867717493	0.777570229380891
1	229676442	229685328	1	loss	A	-1	somatic	0	0.00271155602614331	0.00498416687278724
1	234777006	234782930	7	gain	AAAAABB	3.81938	germline	1	0.0143139258475017	0.0366435157132121
1	236095096	236098058	6	gain	AAAABB	25.8549	somatic	0	0.083295116728486	0.270089938984032
1	236877064	237028126	2	neutral	AA	28.7892	somatic	0	0.0586707666938163	0.045746708812577
2	660526	672374	2	neutral	AA	12.8106	somatic	0	0.306747433103079	0.128843761132798
2	909334	912296	4	gain	AAAA	7.04196	somatic	0	0.0833045901287091	0.270106389845189
2	1066320	1072244	2	neutral	AA	54.6208	somatic	0	0.137818752973142	0.336817762726161
2	1152218	1158142	2	neutral	AA	100	somatic	0	0.150476941237884	0.21279753442923
2	1827554	1904566	2	neutral	AA	18.1129	somatic	0	0.774241973068766	0.978574567901305
2	3163416	3178226	2	neutral	AA	88.4028	somatic	0	0.191200374806522	0.313219862226383
2	3178226	3181188	6	gain	AAAAAA	3.10429	germline	1	0.0832922020116837	0.270084877327736
2	3317440	3341136	2	neutral	AA	100	somatic	0	0.669845356976699	0.693783727557232
2	4164572	4176420	1	loss	A	-1	somatic	0	0.000535481685565395	0.0006743825282014
2	5867722	5876608	2	neutral	AA	100	somatic	0	0.364852690724648	0.685802041955094
2	10583226	10609884	2	neutral	AA	100	somatic	0	0.0407444407036323	0.0318880574125791
2	11664356	11676204	2	neutral	AA	100	somatic	0	0.660224443110888	0.673143741498098
2	13530416	13536340	2	neutral	AA	54.5873	somatic	0	0.576361630829266	0.769928730888785
2	15100276	15118048	2	neutral	AA	38.3838	somatic	0	0.683510399289241	0.658177801012775
2	18293312	18299236	1	loss	A	-1	somatic	0	0.0147821252060385	0.0380655656980996
2	32913744	32916706	5	gain	-	-1	germline	1	0.083295116728486	0.270089938984032
2	48624192	48630116	1	loss	A	-1	somatic	0	0.0143302630839785	0.0366882052897507
2	52522184	52525146	0	loss	-	-1	germline	1	0.083266701763763	0.270040590788687
2	64373146	64376108	4	gain	-	-1	somatic	0	0.0833060476523587	0.270108920811819
2	89772296	89781182	6	gain	-	-1	germline	1	0.00270248799976898	0.00496063218549014
2	89781182	89825612	4	gain	-	-1	germline	1	9.1768948300317e-11	1.38866695920115e-12
2	89825612	89843384	28	gain	-	-1	germline	1	2.2096254241376e-05	1.22919087977014e-05
2	89843384	89852270	4	gain	-	-1	germline	1	0.00270320068113592	0.00496133533500498
2	91410282	91416206	4	gain	-	-1	germline	1	0.014317491024761	0.0366487097273619
2	109072688	109078612	1	loss	A	-1	somatic	0	0.014356990297055	0.0367763381152125
2	109197092	109200054	14	gain	-	-1	germline	1	0.0832703442690801	0.270046917112554
2	117040468	117046392	1	loss	A	-1	somatic	0	0.0143208268996854	0.036674689461364
2	125683584	125695432	1	loss	A	-1	germline	1	0.0143440820199303	0.036728778925496
2	132241452	132247376	3	gain	-	-1	somatic	0	0.0143372862415656	0.0367041526372156
2	169464906	169470830	1	loss	A	-1	somatic	0	0.0148229894781157	0.0381913931823831
2	175338552	175347438	1	loss	A	-1	somatic	0	0.00273756960568311	0.0050563164371189
2	176398948	176407834	1	loss	A	-1	somatic	0	0.00274790465587518	0.00509559469741172
2	193824394	193827356	0	loss	-	-1	germline	1	0.083266701763763	0.270040590788687
2	222863842	222866804	4	gain	-	-1	somatic	0	0.0833045901287091	0.270106389845189
2	239442156	239456966	2	neutral	AA	49.3284	somatic	0	0.291757404351836	0.502559852242994
2	240336680	240354452	2	neutral	AA	36.7404	somatic	0	0.043483612934721	0.182642943024529
2	240893536	240899460	2	neutral	AA	100	somatic	0	0.927091482271448	0.969381191729441
3	28485554	28550718	2	neutral	AA	100	somatic	0	0.2088969356652	0.240423624142706
3	32063650	32066612	0	loss	-	-1	germline	1	0.0832652447977767	0.270038060289429
3	48748596	48941126	2	neutral	AA	27.2883	somatic	0	0.0282663537509238	0.10286650048452
3	56591972	56657136	2	neutral	AA	27.3229	somatic	0	0.125134411952	0.442422985872506
3	66008170	66064448	2	neutral	AA	100	somatic	0	0.491301007384045	0.895935227892417
3	67252210	67258134	2	neutral	AA	100	somatic	0	0.274879283888269	0.614868977742311
3	67909774	67930508	2	neutral	AA	25.9423	somatic	0	0.228822358965018	0.190272102837487
3	68688780	68700628	1	loss	A	-1	somatic	0	0.000620870282135158	0.000897372022622078
3	75554696	75557658	1	loss	A	-1	somatic	0	0.0833235395474497	0.270139293761612
3	75670214	75865706	2	neutral	AA	1.86016	somatic	0	1.66252067520849e-07	2.45183782054958e-07
3	80012506	80015468	0	loss	-	-1	somatic	0	0.0832652447977767	0.270038060289429
3	80989966	81007738	2	neutral	AA	100	germline	1	0.345692563607658	0.671780607450383
3	88018792	88122462	2	neutral	AA	100	somatic	0	0.336708686699999	0.320552736165776
3	89351692	89369464	1	loss	A	-1	germline	1	0.000107905933186049	9.11296934352768e-05
3	90272874	90509834	2	neutral	AA	15.4062	germline	1	1.29851223025682e-16	2.99760216648792e-15
3	93794692	93797654	2	neutral	AA	100	germline	1	0.781876835589051	0.889706463331551
3	98687916	98693840	1	loss	A	-1	somatic	0	0.0143439668135799	0.0367211466994899
3	99224038	99229962	1	loss	A	-1	somatic	0	0.0145498642446499	0.0373470392925755
3	129937016	130274684	2	neutral	AA	11.3678	somatic	0	0.571431354161391	0.791900538446867
3	136302354	136308278	1	loss	A	-1	somatic	0	0.0143288818364729	0.0366739964594034
3	147238058	147267678	2	neutral	AA	100	somatic	0	0.60100330666055	0.765871530815937
3	159411878	159435574	2	neutral	AA	100	somatic	0	0.555526174023315	0.600727863560388
3	162794482	162907038	1	loss	A	-1	germline	1	6.11068829936003e-26	0
3	162998860	163001822	0	loss	-	-1	germline	1	0.083266701763763	0.270040590788687
3	163046252	163052176	0	loss	-	-1	somatic	0	0.0143072576190334	0.0366338219433152
3	164559834	164577606	2	neutral	AA	36.38	somatic	0	0.00155924427849258	0.0025307392625864
3	177257928	177263852	3	gain	AAA	14.571	somatic	0	0.0143988973909735	0.036868136974466
3	177263852	177456382	2	neutral	AA	100	somatic	0	0.333561674197323	0.280047026693866
3	182669502	182687274	2	neutral	AA	54.5873	somatic	0	0.451832488141866	0.669226366131043
3	186357192	186377926	2	neutral	AA	100	somatic	0	0.181159072500721	0.202988727071623
3	191345200	191354086	1	loss	A	-1	somatic	0	0.00285775117852554	0.00546757159879896
3	197384718	197390642	3	gain	AAB	1.85548	somatic	0	0.0143447732751726	0.0367155968611947
4	127366	133290	1	loss	A	-1	somatic	0	0.0143220924108912	0.0366615243830831
4	553894	556856	3	gain	-	-1	somatic	0	0.0833104203472497	0.270116513815573
4	40292086	40298010	3	gain	-	-1	somatic	0	0.0143284214467353	0.0366719175222596
4	42759432	42768318	1	loss	A	-1	somatic	0	0.00276744994751687	0.00517301809871618
4	68516984	68623616	1	loss	A	-1	germline	1	1.00666628756219e-16	0
4	129143200	129149124	1	loss	A	-1	somatic	0	0.0143445428534937	0.0367294728330351
4	156038160	156052970	1	loss	A	-1	germline	1	0.000534001778412222	0.000673643917725619
4	160955080	160963966	1	loss	A	-1	somatic	0	0.002868953467923	0.00552278327061095
4	172509842	172512804	0	loss	-	-1	germline	1	0.0832674302545005	0.270041856044808
4	189268838	189277724	1	loss	A	-1	somatic	0	0.00275127946922391	0.00508508365894067
5	414680	417642	3	gain	AAB	6.91539	somatic	0	0.0833111491478067	0.270117779331345
5	758272	764196	3	gain	AAB	90.7514	somatic	0	0.0143291120362349	0.0366739964594008
5	814550	820474	1	loss	A	-1	somatic	0	0.0143599883263246	0.0367617522024929
5	2482156	2494004	2	neutral	AA	40.9437	somatic	0	0.164211470334529	0.142445602230788
5	3945384	4004624	2	neutral	AA	42.8864	somatic	0	0.0315866502918317	0.031296026045188
5	6537134	6569716	2	neutral	AA	54.5789	germline	1	0.660091185744848	0.606417911858702
5	7176926	7191736	1	loss	A	-1	germline	1	0.000108041338475793	9.12955759567735e-05
5	8509826	8521674	2	neutral	AA	100	somatic	0	0.69844787433723	0.991526422827094
5	12810650	12813612	0	loss	-	-1	germline	1	0.0832652447977767	0.270038060289429
5	13654820	13734794	2	neutral	AA	100	somatic	0	0.531634400261587	0.301080317802574
5	14626356	14638204	2	neutral	AA	100	somatic	0	0.908866016838557	0.665267205916337
5	14972910	14984758	2	neutral	AA	100	somatic	0	0.83475024770349	0.604622815767957
5	15799308	16258418	2	neutral	AA	48.6372	germline	1	0.60623599321461	0.501007804614052
5	17712760	17715722	4	gain	AAAB	18.6327	somatic	0	0.0833075051966651	0.27011145179576
5	18986420	19069356	2	neutral	AA	100	germline	1	0.220678279990697	0.340974178326007
5	19809856	19895754	2	neutral	AA	54.8601	somatic	0	0.252408923227077	0.321633716189046
5	26797214	26803138	1	loss	A	-1	somatic	0	0.0143663321309313	0.0367902341672935
5	31269834	31275758	2	neutral	AA	72.5771	somatic	0	0.128262590827879	0.364208147298226
5	43571020	43707272	2	neutral	AA	100	somatic	0	0.239868415746377	0.292195083159849
5	44687694	44972046	2	neutral	AA	14.584	somatic	0	0.984186495083113	0.411472105632627
5	45081640	45371916	2	neutral	AA	100	somatic	0	0.754800157413384	0.352783253582083
5	45371916	45377840	1	loss	A	-1	somatic	0	0.0144123119171383	0.0369503692066976
5	45946544	46269402	2	neutral	AA	100	somatic	0	1.06262824486348e-20	0
5	46269402	46272364	1	loss	A	-1	germline	1	0.0832783582351292	0.270060835405907
5	46272364	46275326	2	neutral	AA	-1	germline	1	NA	NA
5	46275326	46405654	2	neutral	AA	2.1341	germline	1	1.02929120770162e-05	8.53893950945039e-05
5	46405654	46411578	1	loss	A	-1	somatic	0	0.0143443124350797	0.0367454358722462
5	46411578	50268102	2	neutral	AA	1.93798	germline	1	7.95686011252681e-17	0
5	50268102	50274026	2	neutral	AA	-1	germline	1	NA	NA
5	50274026	50747946	2	neutral	AA	23.2806	somatic	0	0.413173071057224	0.259584515006521
5	52910206	52913168	1	loss	A	-1	somatic	0	0.0832710727856325	0.270048182390321
5	55490108	55498994	2	neutral	AA	80.0732	somatic	0	0.0955866577862122	0.0916660202779129
5	57702722	57711608	2	neutral	AA	54.5678	somatic	0	0.884802659545412	0.995859015863589
5	61345982	61505930	2	neutral	AA	100	somatic	0	0.24463834276643	0.673801129563368
5	62361948	62524858	2	neutral	AA	66.5419	somatic	0	0.299523455028577	0.473509674558794
5	76496612	76502536	2	neutral	AA	100	somatic	0	0.322793157547823	0.558429826764092
5	76594358	76780964	2	neutral	AA	38.5145	somatic	0	0.825497822228547	0.999368921698808
5	84650998	84659884	1	loss	A	-1	germline	1	0.0143125459891406	0.036649748607488
5	85118994	85518864	2	neutral	AA	100	somatic	0	0.587839654362293	0.488556771932842
5	86916928	86922852	1	loss	A	-1	somatic	0	0.0143448884872363	0.0367423121914277
5	91202942	91211828	2	neutral	AA	100	somatic	0	0.00399902972126634	0.00891615216694508
5	92852776	92861662	2	neutral	AA	100	somatic	0	0.320922885482323	0.579725819271781
5	93504416	93717680	2	neutral	AA	16.9671	somatic	0	0.250037836826028	0.367401191651129
5	96185026	96241304	2	neutral	AA	100	somatic	0	0.851186016364018	0.780670612447582
5	99218114	99232924	2	neutral	AA	12.1263	somatic	0	0.0486750692728689	0.175455136563802
5	101478120	101504778	2	neutral	AA	54.5694	somatic	0	0.35471340784455	0.442311998051072
5	118539240	118545164	1	loss	A	-1	somatic	0	0.0143219773603418	0.0366781546430246
5	120043936	120049860	1	loss	A	-1	germline	1	0.0143142708304272	0.0366552897366468
5	128070956	128079842	1	loss	A	-1	somatic	0	0.00701975312504047	0.0261435057212114
5	130970754	130994450	2	neutral	AA	54.5678	somatic	0	0.0426638431819119	0.171898086622642
5	134608090	134634748	2	neutral	AA	100	somatic	0	0.000682163537259453	0.00949879751509097
5	137075436	137093208	2	neutral	AA	100	somatic	0	0.065580376651312	0.12857195701656
5	141171882	141177806	3	gain	AAB	15.3501	somatic	0	0.0163067452217997	0.0426825804405672
5	149361812	149394394	2	neutral	AA	54.5856	germline	1	0.937559167180123	0.963118461779272
5	154900752	154921486	2	neutral	AA	37.9103	somatic	0	0.722170753997116	0.777125135033304
5	156050008	156061856	1	loss	A	-1	germline	1	0.000533328141780928	0.000672181673428529
5	160649994	160655918	1	loss	A	-1	somatic	0	0.0144475195329803	0.0369099299477584
5	166520678	166544374	2	neutral	AA	100	somatic	0	0.557901706300063	0.514591218515372
5	167275988	167332266	2	neutral	AA	38.8027	somatic	0	0.571083198270345	0.814054827729204
5	170682288	170729680	2	neutral	AA	36.3787	somatic	0	0.850670252257547	0.788387847254724
5	176475960	176627022	2	neutral	AA	100	germline	1	0.166323360665473	0.507444500989239
5	178584904	178587866	3	gain	AAB	14.5968	somatic	0	0.0833089627616288	0.270113982797011
5	178679688	178688574	1	loss	A	-1	germline	1	0.0148889365528025	0.0380655656980996
5	178795206	178830750	2	neutral	AA	31.3179	somatic	0	0.677514447527408	0.983778648613473
5	181043364	181046326	4	gain	AABB	13.3648	germline	1	0.0833038613746306	0.270105124368365
6	296200	382098	3	gain	-	-1	germline	1	5.05224508276427e-20	0
6	32487216	32558304	1	loss	A	-1	somatic	0	1.4821663757217e-09	1.0741751932386e-10
6	35783922	35795770	4	gain	-	-1	germline	1	0.0137779389938293	0.0222351319358017
6	51201132	51204094	1	loss	A	-1	somatic	0	0.083300946409958	0.270100062504356
6	54062424	54071310	1	loss	A	-1	somatic	0	0.00273695466191137	0.00502755606016758
6	60232270	60238194	4	gain	-	-1	somatic	0	0.014318986332195	0.0366507875133746
6	60238194	60241156	5	gain	-	-1	somatic	0	0.0832980315279103	0.270095000709568
6	73901900	73910786	1	loss	A	-1	somatic	0	0.014324853868665	0.0366878586756183
6	76387018	76389980	0	loss	-	-1	somatic	0	0.0832696157576907	0.270045651839133
6	76730610	76742458	1	loss	A	-1	somatic	0	0.014318986332195	0.036651133821066
6	77616248	77625134	1	loss	A	-1	somatic	0	0.00270655678199282	0.00496654148160858
6	78256040	78327128	1	loss	A	-1	germline	1	2.27671272722419e-17	0
6	98373944	98430222	2	neutral	AA	25.1113	somatic	0	0.0608553351139571	0.230794119728016
6	99609098	99612060	2	neutral	AA	100	somatic	0	0.150563141030237	0.37239204626167
6	105088798	105091760	2	neutral	AA	100	somatic	0	0.112698481376484	0.31791070261422
6	108234442	108287758	2	neutral	AA	36.7567	somatic	0	0.581456884960073	0.861115140605771
6	111211252	111214214	2	neutral	AA	100	somatic	0	0.462458694905597	0.69099141878735
6	116584320	116696876	2	neutral	AA	38.3305	somatic	0	0.286407441994799	0.495774530888357
6	120491198	120526742	2	neutral	AA	100	germline	1	0.203879282777082	0.229291613975926
6	121279090	121282052	2	neutral	AA	100	somatic	0	0.111063606118825	0.315405699858692
6	121969236	121992932	2	neutral	AA	29.1829	somatic	0	0.0600898794435827	0.137217571774737
6	123174770	123201428	2	neutral	AA	100	somatic	0	0.243263630211575	0.180564763941022
6	125979784	126036062	2	neutral	AA	100	somatic	0	0.724917398438863	0.258197348705243
6	126589956	126601804	2	neutral	AA	36.379	somatic	0	0.84998827826846	0.681249821198237
6	127419316	127437088	2	neutral	AA	54.5679	somatic	0	0.400933450045463	0.387219531376109
6	131027032	131050728	2	neutral	AA	100	somatic	0	0.0435871130384129	0.104357362183994
6	134442218	134445180	2	neutral	AA	100	somatic	0	0.921496304149299	0.942839157122108
6	140674266	140680190	2	neutral	AA	100	somatic	0	0.205301734981577	0.550295510385
6	141702080	141713928	2	neutral	AA	54.7289	somatic	0	0.22983735409597	0.55928220481109
6	145887386	145890348	2	neutral	AA	100	somatic	0	0.485553093695271	0.709059583254096
6	147788990	147791952	2	neutral	AA	100	somatic	0	0.198115854303929	0.433260226516333
6	156903064	156911950	2	neutral	AA	37.008	somatic	0	0.472464501203135	0.870056406064339
6	157311820	157314782	9	gain	AAAAAABBB	4.48591	somatic	0	0.0832827297526643	0.270068427422968
6	158952768	159000160	2	neutral	AA	100	somatic	0	0.752198463247211	0.513859700296122
6	159862102	159882836	2	neutral	AA	54.5679	somatic	0	0.983931101545284	0.811742647172375
6	160333060	160676652	2	neutral	AA	10.7502	germline	1	0.433041242021864	0.504297003757005
6	168659242	168662204	3	gain	AAB	16.4503	somatic	0	0.0833169797381835	0.270127903613318
6	169719638	170018800	2	neutral	AA	100	somatic	0	0.392981066159601	0.58613117437613
7	903410	906372	7	gain	AAAABBB	24.882	germline	1	0.0832892873775016	0.270079815740681
7	2511776	2547320	2	neutral	AA	100	somatic	0	0.581369202573889	0.649103589448312
7	8249170	8266942	2	neutral	AA	100	somatic	0	0.373801445283959	0.566997131963417
7	9762752	9765714	0	loss	-	-1	somatic	0	0.0832659732781884	0.270039325536895
7	19486998	19498846	2	neutral	AA	9.46202	somatic	0	0.3506760879918	0.485898871839492
7	24232122	24243970	2	neutral	AA	100	somatic	0	0.709630363775533	0.83311947534188
7	26095220	26107068	1	loss	A	-1	somatic	0	0.000583769118726616	0.000811547336471041
7	26957162	27078604	2	neutral	AA	72.2277	somatic	0	0.289435602443164	0.392386746195162
7	27993862	27999786	2	neutral	AA	54.5693	somatic	0	0.0340586307613966	0.0719586210163661
7	29534102	29545950	2	neutral	AA	54.5678	somatic	0	0.67402031413165	0.906655346209883
7	30564878	30674472	2	neutral	AA	78.5715	somatic	0	0.306854907319028	0.556923544493442
7	31862234	32001448	2	neutral	AA	100	somatic	0	0.681750951092238	0.666486812993562
7	35635822	35712834	2	neutral	AA	26.8214	somatic	0	0.0505992477111472	0.19723956070391
7	38272002	38289774	2	neutral	AA	100	somatic	0	2.64066827394271e-05	1.58184741769762e-05
7	44889110	44930578	2	neutral	AA	54.8528	somatic	0	0.110183112525603	0.245175655000772
7	55333122	55344970	2	neutral	AA	100	somatic	0	0.50398584135807	0.455231987117244
7	57483534	57486496	2	neutral	AA	21.8315	somatic	0	0.91438591279902	0.940594695371412
7	57486496	57498344	3	gain	AAA	16.0204	germline	1	0.00053325919961304	0.00067256284132422
7	57930796	57939682	3	gain	AAA	2.89483	somatic	0	0.002704542664902	0.00496513392136655
7	57948568	57995960	2	neutral	AA	2.94638	somatic	0	1.9732156657905e-06	1.35694624687765e-05
7	58061124	58067048	4	gain	AABB	7.23004	somatic	0	0.0143200216257307	0.0366556360815528
7	61046820	61052744	4	gain	-	-1	germline	1	0.0143181811495367	0.0366497486074855
7	62296784	62456732	3	gain	AAB	0.344817	germline	1	5.21191259657113e-15	6.66133814775094e-16
7	68996828	69014600	2	neutral	AA	100	germline	1	0.335263284157129	0.685687398003198
7	71935132	71958828	2	neutral	AA	100	somatic	0	0.0798394652748684	0.00935543386058146
7	74580198	74597970	2	neutral	AA	54.5678	somatic	0	0.111841539082932	0.146635461181475
7	75723530	75741302	3	gain	AAB	15.8763	somatic	0	2.22462913981176e-05	1.23859869303189e-05
7	77977612	77995384	2	neutral	AA	17.753	somatic	0	0.702733983639734	0.728814028361549
7	90181052	90184014	0	loss	-	-1	somatic	0	0.0832674302545005	0.270041856044808
7	94846202	94852126	2	neutral	AA	100	somatic	0	0.861803119425474	0.764856334535298
7	97722304	97840784	2	neutral	AA	75.4205	somatic	0	0.356698933431601	0.266218848911283
7	100947922	100956808	4	gain	AABB	0.752535	germline	1	0.00270466850708547	0.00496618955726125
7	100956808	100959770	15	gain	AAAAAAAAABBBBBB	6.5776	germline	1	0.0832703442690801	0.270046917112554
7	100959770	100971618	4	gain	AABB	0.277275	germline	1	0.000532930824492009	0.000671699151484351
7	101258932	101454424	2	neutral	AA	21.8929	somatic	0	0.0107764373077319	0.0128386573877546
7	106098840	106101802	4	gain	-	-1	somatic	0	0.0833075051966651	0.27011145179576
7	106101802	106152156	2	neutral	AA	100	germline	1	0.113396333859565	0.355464197927036
7	106851188	106877846	2	neutral	AA	100	somatic	0	0.868540968783374	0.97987301350944
7	106966706	107171084	2	neutral	AA	29.0762	somatic	0	0.46260536960399	0.838997125997797
7	109801340	109813188	1	loss	A	-1	somatic	0	0.000533729793564964	0.000672982360045316
7	116178526	116184450	2	neutral	AA	54.5678	somatic	0	0.463209647808662	0.382976895802386
7	125562142	125588800	2	neutral	AA	45.9786	somatic	0	0.883711680770155	0.931162868180199
7	126086416	126092340	2	neutral	AA	100	somatic	0	0.100627757685218	0.304084602135982
7	135736612	135763270	2	neutral	AA	54.5683	somatic	0	0.178527931387527	0.224793168678085
7	138597904	138618638	2	neutral	AA	46.2874	somatic	0	0.349999744854134	0.76458492742494
7	140872720	140943808	2	neutral	AA	36.3786	somatic	0	0.848331536583649	0.936885073599855
7	143846568	143849530	5	gain	-	-1	germline	1	0.083300946409958	0.270100062504346
7	145010634	145140962	2	neutral	AA	82.0145	somatic	0	0.978152083057294	0.660369274195023
7	146328724	146331686	2	neutral	AA	100	somatic	0	0.118642290687095	0.326914632059239
7	151820272	151903208	2	neutral	AA	23.8553	somatic	0	0.768437050209866	0.506571879965043
7	152374166	152400824	2	neutral	AA	21.8293	germline	1	0.594333425602888	0.905094307187748
7	152400824	152406748	11	gain	AAAAAAABBBB	63.2287	germline	1	0.0143092118158496	0.0366383223431269
7	152406748	152409710	6	gain	AAAABB	3.94164	germline	1	0.0832936593597572	0.270087408147229
7	152412672	152418596	2	neutral	AA	6.43228	germline	1	0.708992746364651	0.863751119039164
7	155256192	155262116	2	neutral	AA	54.5678	germline	1	0.0611861201257118	0.136411723553411
7	157551742	157622830	2	neutral	AA	11.3311	somatic	0	0.672412846619797	0.320818631132042
7	158144142	158153028	3	gain	AAB	2.56504	somatic	0	0.0143284214467353	0.0366781546430219
7	158594366	158597328	5	gain	AAABB	41.0186	germline	1	0.0832973028203084	0.270093735271693
8	4265280	4268242	1	loss	A	-1	somatic	0	0.0832703442690801	0.270046917112563
8	6110606	6116530	1	loss	A	-1	somatic	0	0.0143376317210749	0.0366999918750527
8	25114798	25117760	0	loss	-	-1	germline	1	0.0832652447977767	0.270038060289429
8	32821922	32824884	0	loss	-	-1	germline	1	0.083266701763763	0.270040590788687
8	38073548	38079472	1	loss	A	-1	somatic	0	0.0169445889872105	0.0446610551550921
8	40917068	40922992	1	loss	A	-1	somatic	0	0.0144049094368786	0.0369019164192287
8	43653956	43656918	5	gain	-	-1	germline	1	0.0832980315279103	0.270095000709568
8	43656918	43659880	7	gain	-	-1	germline	1	0.0832914733453926	0.270083611924481
8	50031142	50117040	2	neutral	AA	100	somatic	0	0.305810256877937	0.401598177857463
8	50117040	50125926	0	loss	-	-1	germline	1	0.0143111662481186	0.0366466320444128
8	51316650	51369966	2	neutral	AA	100	somatic	0	0.922820377992844	0.799692611078589
8	51651356	51832038	2	neutral	AA	79.5893	somatic	0	0.339178864891796	0.435993800480458
8	53588504	53603314	2	neutral	AA	100	somatic	0	0.19083645976808	0.248572910643889
8	58247730	58280312	2	neutral	AA	75.208	somatic	0	0.729598624345797	0.771025906840156
8	59222228	59225190	3	gain	AAA	22.8256	somatic	0	0.083312606764414	0.270120310375872
8	68774678	68786526	2	neutral	AA	67.3114	somatic	0	0.124977662022344	0.33563827168238
8	71653742	71704096	2	neutral	AA	37.0874	somatic	0	0.795062830272848	0.726116962365284
8	72518646	72817808	2	neutral	AA	100	somatic	0	0.930910722119195	0.922480704541012
8	75157788	75249610	2	neutral	AA	72.6236	somatic	0	0.256812184068284	0.557700118262704
8	79944380	80000658	2	neutral	AA	54.579	somatic	0	0.736701716679511	0.909526391577333
8	80347212	80364984	2	neutral	AA	100	somatic	0	0.303655399845741	0.478419887400278
8	86158656	86182352	1	loss	A	-1	somatic	0	0.000190706755403481	0.000921137550398132
8	86318604	86540754	2	neutral	AA	22.3849	somatic	0	0.00294417085065563	0.0212140163527015
8	89129542	89212478	2	neutral	AA	90.6974	somatic	0	0.323964020686516	0.416392426121405
8	89482020	89487944	2	neutral	AA	100	somatic	0	0.345279632914841	0.482028782090403
8	91351042	91472484	2	neutral	AA	33.9059	somatic	0	0.157651571528207	0.194330705068812
8	95648904	95696296	2	neutral	AA	100	somatic	0	0.774999325426949	0.904136018843843
8	101478120	101484044	2	neutral	AA	100	germline	1	0.455095889988238	0.781198762543636
8	108883120	108894968	2	neutral	AA	100	somatic	0	0.84009603782874	0.970586439645289
8	113305386	113329082	2	neutral	AA	54.5687	germline	1	0.662807051002073	0.878121851652672
8	119907684	119916570	2	neutral	AA	100	somatic	0	0.274599966136661	0.617231319113393
8	120405300	120577096	2	neutral	AA	100	somatic	0	0.694918291083797	0.790437116501835
8	129593424	129599348	2	neutral	AA	100	somatic	0	0.156431916935185	0.195322203863174
8	130837464	130840426	0	loss	-	-1	somatic	0	0.0832696157576907	0.270045651839133
8	141873876	141876838	3	gain	AAB	17.3231	somatic	0	0.0833111491478067	0.270117779331345
8	144050946	144124996	2	neutral	AA	54.5722	somatic	0	0.132836371580529	0.108455904500644
8	144124996	144127958	6	gain	AAABBB	100	somatic	0	0.083295116728486	0.270089938984032
9	1578746	1605404	2	neutral	AA	54.5686	somatic	0	0.249184201178935	0.413620289522241
9	20701418	21415260	2	neutral	AA	100	somatic	0	0.0915805311375744	0.123913438212787
9	22496390	22502314	1	loss	A	-1	somatic	0	0.0143370559259722	0.0367076202542694
9	23361294	23379066	1	loss	A	-1	germline	1	2.31524539134897e-05	1.35969721919427e-05
9	28168620	28192316	2	neutral	AA	8.02734	somatic	0	0.315165118926609	0.49532309733338
9	29092764	29098688	1	loss	A	-1	somatic	0	0.0143554914894625	0.0367350245062517
9	34800538	34833120	2	neutral	AA	28.9751	somatic	0	0.29730914260855	0.294441427089048
9	40925954	40928916	7	gain	AAAAABB	2.97753	germline	1	0.0832914733453926	0.270083611924481
9	94256764	94280460	2	neutral	AA	36.3786	somatic	0	0.392194282809119	0.213305810317282
9	103012436	103015398	1	loss	A	-1	somatic	0	0.0832710727856325	0.270048182390321
9	110204172	110221944	2	neutral	AA	100	germline	1	0.540850598075313	0.719029335158931
9	112194636	112262762	2	neutral	AA	55.0709	somatic	0	0.882253750484414	0.953850154814751
9	129424590	129445324	2	neutral	AA	1.69265	somatic	0	0.221081937164549	0.479268350191046
9	130852274	130870046	2	neutral	AA	100	somatic	0	0.333544771074371	0.41397217922192
9	137350902	137356826	3	gain	AAB	29.1312	somatic	0	0.0227171005792233	0.0628044881084514
9	137356826	137362750	1	loss	A	-1	germline	1	0.0143491519074292	0.0367537668236041
10	38485266	38526734	3	gain	-	-1	germline	1	9.63445774200254e-11	1.91169302610206e-12
10	38526734	38529696	17	gain	-	-1	germline	1	0.0832696157576907	0.270045651839124
10	38577088	38580050	5	gain	-	-1	somatic	0	0.0832980315279103	0.270095000709568
10	38580050	38834782	3	gain	-	-1	somatic	0	8.33404674578253e-15	2.55351295663786e-15
10	41820478	41841212	2	neutral	AA	8.07723	somatic	0	0.0188965992415853	0.0756837652782792
10	41856022	41915262	28	gain	AAAAAAAAAAAAAAAAAAABBBBBBBBB	5.28042	germline	1	4.5942779302262e-06	1.6636350685939e-06
10	42300322	42321056	3	gain	AAA	0.983501	germline	1	5.05926415750059e-06	2.49084377346165e-06
10	46168694	46171656	3	gain	AAB	7.5347	germline	1	0.0833140644016791	0.27012284143771
10	46171656	46331604	3	gain	AAB	0.523988	germline	1	5.36033053436755e-22	0
10	46515248	46559678	7	gain	AAAABBB	0.801899	germline	1	9.16320327362864e-11	1.38677958005928e-12
10	47006940	47024712	2	neutral	AA	100	germline	1	0.226962700437333	0.122854718369835
10	47294254	47300178	2	neutral	AA	71.2099	somatic	0	0.0515236039150686	0.0865724021738909
10	52228946	52276338	2	neutral	AA	27.2839	somatic	0	0.0138174798035431	0.0246257934395442
10	52602158	52611044	2	neutral	AA	100	somatic	0	0.0237301498425332	0.0574405546212059
10	57125132	57181410	2	neutral	AA	1.90628	somatic	0	0.671494307415649	0.550317172841373
10	59867944	59971614	2	neutral	AA	29.0575	somatic	0	0.186736579789995	0.298954448982005
10	61805092	61825826	2	neutral	AA	54.5687	somatic	0	0.747271882413782	0.575384865013934
10	62474504	62495238	2	neutral	AA	54.5678	somatic	0	0.664757224827364	0.99508046103492
10	67838686	67927546	2	neutral	AA	36.612	somatic	0	0.00428075312794525	0.00160620609971762
10	76692104	76698028	2	neutral	AA	100	somatic	0	0.0298014015010189	0.0799099010897303
10	80989966	80992928	0	loss	-	-1	somatic	0	0.083266701763763	0.270040590788687
10	82088868	82201424	2	neutral	AA	44.324	somatic	0	0.630193027857121	0.520368720228835
10	82731622	82734584	2	neutral	AA	100	germline	1	0.530403413649085	0.74242149494457
10	93865780	93954640	2	neutral	AA	33.8302	somatic	0	0.0886149760306311	0.137780308884578
10	97648254	97657140	2	neutral	AA	54.5678	somatic	0	0.512968582577111	0.705753521129105
10	102692540	102769552	2	neutral	AA	100	germline	1	0.0513202207928706	0.0767278836728373
10	117019734	117138214	2	neutral	AA	54.5678	somatic	0	0.685616668962372	0.903449191803949
10	120061708	120076518	2	neutral	AA	100	somatic	0	0.860126144727199	0.560063289291374
10	121844832	121945540	2	neutral	AA	41.8558	somatic	0	0.619409558133519	0.885684793970639
10	122558674	122573484	2	neutral	AA	100	somatic	0	0.686223227631693	0.972513728009792
10	125023058	125031944	2	neutral	AA	100	somatic	0	0.748527572760424	0.882171411710251
10	128461940	128464902	7	gain	AAAABBB	10.2295	germline	1	0.0832892873775016	0.270079815740681
10	129448286	129534184	2	neutral	AA	26.0174	somatic	0	0.304245387852448	0.84246304119099
10	131687558	131714216	2	neutral	AA	100	germline	1	0.37589480424244	0.746957591963914
10	132362894	132365856	4	gain	AAAA	22.3807	somatic	0	0.0833038613746306	0.270105124368365
10	132836814	132907902	2	neutral	AA	53.0504	somatic	0	0.712502910222021	0.775740342446357
10	133109318	133112280	4	gain	AAAB	7.23627	germline	1	0.0833031326257163	0.270103858895869
10	133438100	133568428	3	gain	AAB	0.583622	germline	1	1.44152137278404e-28	0
10	133568428	133586200	3	gain	AAB	-1	somatic	0	NA	NA
10	133621744	133797422	3	gain	AAB	-1	somatic	0	NA	NA
11	18924218	18941990	3	gain	-	-1	germline	1	2.21867551410047e-05	1.23334422322818e-05
11	28989094	28992056	0	loss	-	-1	germline	1	0.0832674302545005	0.270041856044808
11	31370542	31376466	1	loss	A	-1	somatic	0	0.014801538144757	0.0380723675882406
11	37741804	37747728	1	loss	A	-1	somatic	0	0.0149260035819821	0.0384936336169928
11	42946038	42951962	3	gain	-	-1	somatic	0	0.014326119693766	0.0366615243830805
11	47039522	47042484	0	loss	-	-1	somatic	0	0.0832652447977767	0.270038060289429
11	48713052	48716014	1	loss	A	-1	somatic	0	0.0832710727856325	0.270048182390321
11	48822646	48846342	3	gain	-	-1	somatic	0	4.61553426313351e-06	1.67113426552401e-06
11	54542268	54906594	2	neutral	AA	38.2981	somatic	0	1.55666549349068e-13	2.91489943293755e-10
11	54909556	54930290	2	neutral	AA	27.6385	somatic	0	0.00886526782493783	0.0150109657046948
11	54930290	54936214	3	gain	-	-1	somatic	0	0.0143200216257307	0.0366528654024522
11	54936214	55028036	2	neutral	AA	37.0555	somatic	0	2.54442530006209e-06	3.03967956150064e-06
11	55036922	55048770	3	gain	-	-1	germline	1	0.000533315974912539	0.000672321411469445
11	61126794	61162338	2	neutral	AA	36.3786	somatic	0	0.792072130017782	0.993604305937435
11	61965040	61994660	2	neutral	AA	27.2877	germline	1	0.223631047298104	0.189882795384402
11	63860720	63902188	2	neutral	AA	54.5678	somatic	0	0.961915828786021	0.723589472558163
11	70110540	70122388	2	neutral	AA	100	germline	1	0.754171844591982	0.993913356192049
11	76840204	77017924	2	neutral	AA	12.1765	somatic	0	0.999691237465675	0.614472376784402
11	83608374	83635032	2	neutral	AA	54.5678	somatic	0	0.137157189599564	0.079152060822233
11	84159306	84174116	2	neutral	AA	100	germline	1	0.96208936954645	0.99989017994663
11	84200774	84215584	2	neutral	AA	100	somatic	0	0.00295180932249064	0.00644221876653417
11	88581572	88605268	2	neutral	AA	36.3786	somatic	0	0.547525540361579	0.928097246130714
11	91919746	91931594	2	neutral	AA	100	germline	1	0.45695549698359	0.831394756334753
11	96561200	96567124	1	loss	A	-1	germline	1	0.0143113961968074	0.0366428232266588
11	97974074	97979998	2	neutral	AA	100	somatic	0	0.139754345491809	0.419982323988951
11	98391716	98397640	1	loss	A	-1	somatic	0	0.0144067597425071	0.0368653522486305
11	102147532	102171228	2	neutral	AA	32.5863	somatic	0	0.664028702114205	0.757949358574276
11	103024284	103027246	1	loss	A	-1	somatic	0	0.083312606764414	0.270120310375882
11	104508246	104526018	2	neutral	AA	100	somatic	0	0.395643818016664	0.292372712537788
11	112135396	112274610	2	neutral	AA	10.8752	somatic	0	0.0518518856992115	0.0128300660740255
11	118764352	118817668	2	neutral	AA	21.8275	germline	1	0.766794826782157	0.501531608299903
11	120141682	120177226	2	neutral	AA	54.5679	somatic	0	0.0372380540914932	0.094665744975086
11	123710892	123799752	2	neutral	AA	15.6387	somatic	0	0.713433369221596	0.204906580939149
11	134439256	134477762	2	neutral	AA	15.8859	somatic	0	0.593114577259925	0.619859945437784
12	2254082	2257044	5	gain	-	-1	germline	1	0.0832965741178703	0.270092469838145
12	11385928	11391852	1	loss	A	-1	somatic	0	0.0143304933033142	0.0366888985266105
12	18094858	18100782	1	loss	A	-1	somatic	0	0.0143893058259495	0.0368455164021376
12	34690944	34696868	1	loss	A	-1	germline	1	0.0143085220724418	0.0366376299424439
12	37596666	37602590	1	loss	A	-1	somatic	0	0.0143454645597982	0.0367489069011899
12	37602590	37682564	2	neutral	AA	2.59952	somatic	0	0.00257153324954814	0.00511461493115006
12	37682564	37688488	2	neutral	AA	-1	germline	1	NA	NA
12	37688488	37694412	1	loss	A	-1	somatic	0	0.0144815249483439	0.036982120228044
12	37694412	37744766	2	neutral	AA	0.913343	germline	1	3.1169132822444e-05	4.15272785808662e-05
12	37747728	38017270	2	neutral	AA	100	somatic	0	2.39641596154997e-21	0
12	39024350	39033236	2	neutral	AA	100	somatic	0	0.156482074698229	0.202256781763376
12	39711534	39714496	0	loss	-	-1	germline	1	0.083266701763763	0.270040590788687
12	40090670	40223960	2	neutral	AA	76.432	somatic	0	0.745009902601747	0.923142491307537
12	40449072	40514236	2	neutral	AA	4.65488	germline	1	0.493586310045902	0.880605524016679
12	45508168	45517054	1	loss	A	-1	somatic	0	0.00276385377790846	0.00507997930981108
12	47631922	47634884	1	loss	A	-1	somatic	0	0.0832798153869874	0.270063366060954
12	54930290	55454564	2	neutral	AA	73.0594	somatic	0	0.4496586902179	0.241242243749945
12	56408328	56420176	2	neutral	AA	62.232	somatic	0	0.453901913034589	0.668543067583065
12	56556428	57065892	2	neutral	AA	5.28379	somatic	0	0.0122158878227175	0.0155242585562025
12	59533238	59545086	2	neutral	AA	5.77695	germline	1	0.266976824144652	0.439681379821515
12	60128600	60131562	0	loss	-	-1	germline	1	0.0832659732781884	0.270039325536895
12	70477828	70483752	1	loss	A	-1	somatic	0	0.0143342923933948	0.0366975649543578
12	71961790	71964752	1	loss	A	-1	somatic	0	0.0832783582351292	0.270060835405907
12	73484258	73519802	2	neutral	AA	55.0709	somatic	0	0.61720629120932	0.949907783074601
12	76647674	76662484	2	neutral	AA	100	somatic	0	0.372559797917213	0.73445859088905
12	81745276	81751200	1	loss	A	-1	somatic	0	0.0143860713886763	0.0367888443554165
12	82953772	83027822	2	neutral	AA	70.8261	germline	1	0.0998721957977712	0.162680485465792
12	83919384	83934194	2	neutral	AA	100	somatic	0	0.567335338192952	0.49821653708908
12	90089230	90098116	1	loss	A	-1	germline	1	0.00277420428762445	0.00518267079253143
12	92529918	93148976	2	neutral	AA	21.83	somatic	0	0.81758137868623	0.917049458614674
12	99398796	99410644	1	loss	A	-1	somatic	0	0.000570342130804635	0.00073705911732036
12	111371200	112558962	2	neutral	AA	55.4967	somatic	0	0.000204799133890082	0.00132200577511454
12	120923650	120929574	1	loss	A	-1	somatic	0	0.0160555394235078	0.041938736294996
12	130428708	130644934	2	neutral	AA	20.2045	germline	1	0.0952100218133102	0.145278070406811
12	130644934	130647896	5	gain	AAABB	7.7597	germline	1	0.083300946409958	0.270100062504346
12	132259224	132404362	2	neutral	AA	6.53613	somatic	0	0.388713853151546	0.362783740665161
13	22019508	22022470	0	loss	-	-1	germline	1	0.083266701763763	0.270040590788687
13	23814480	23817442	2	neutral	AA	100	somatic	0	0.321002547251212	0.566318688195357
13	24679384	24709004	2	neutral	AA	29.031	somatic	0	0.975826179488425	0.899739849115483
13	25011128	25049634	2	neutral	AA	100	germline	1	0.784840034021709	0.912575970533697
13	27176350	27179312	2	neutral	AA	100	somatic	0	0.805519642346908	0.900138591692108
13	29504482	29507444	2	neutral	AA	100	somatic	0	0.901843299891627	0.936557740612888
13	30114654	30147236	2	neutral	AA	54.6183	somatic	0	0.040747599874846	0.122753752775742
13	38482304	38485266	0	loss	-	-1	germline	1	0.0832674302545005	0.270041856044808
13	38485266	38488228	1	loss	A	-1	germline	1	0.0842034045894823	0.271663661966394
13	38488228	38508962	2	neutral	AA	100	germline	1	0.772565840345719	0.9945449505867
13	44569214	44640302	2	neutral	AA	32.1179	somatic	0	0.684213155520672	0.898968469839178
13	46331604	46352338	2	neutral	AA	36.3786	somatic	0	0.198835995138756	0.0781063672445631
13	48834494	48864114	2	neutral	AA	38.3861	somatic	0	0.924230475535885	0.831969865760717
13	51165588	51221866	2	neutral	AA	16.7886	somatic	0	0.410382413020137	0.906470887796016
13	51808342	51832038	2	neutral	AA	83.9378	somatic	0	0.332495886787655	0.502629206867953
13	52673246	52676208	2	neutral	AA	100	somatic	0	0.158707335168987	0.383340185882269
13	54189790	54213486	2	neutral	AA	37.2392	somatic	0	0.558045113114795	0.59138713651001
13	54346776	54349738	2	neutral	AA	100	somatic	0	0.0864874366583384	0.275590566194265
13	54948062	54962872	2	neutral	AA	100	somatic	0	0.940234659900996	0.966616554472414
13	59343670	59346632	2	neutral	AA	100	somatic	0	0.448255828427275	0.679581299074132
13	63028398	63063942	3	gain	AAB	0.308959	germline	1	4.8702150345629e-08	3.54337430508167e-08
13	63063942	63066904	4	gain	AABB	1.3966	germline	1	0.0833024038819661	0.270102593427701
13	71902550	71908474	1	loss	A	-1	germline	1	0.0143353286630436	0.0367183716886097
13	72163206	72219484	2	neutral	AA	54.5678	somatic	0	0.285033623100937	0.694629474788993
13	73137704	73161400	2	neutral	AA	36.379	somatic	0	0.263634138445273	0.141889016297533
13	73901900	73904862	2	neutral	AA	54.5678	somatic	0	0.690740546031241	0.84405109176152
13	74929714	74941562	2	neutral	AA	54.5789	somatic	0	0.390728359208809	0.338244872409336
13	90234368	90237330	2	neutral	AA	100	somatic	0	0.190274211774241	0.42371968359387
13	94156056	94191600	2	neutral	AA	100	somatic	0	0.786130070778346	0.376787460642458
13	95308274	95311236	2	neutral	AA	100	somatic	0	0.310785654569562	0.556249024233839
13	98602018	98607942	1	loss	A	-1	somatic	0	0.0144189075754888	0.0369597873507763
13	98619790	98667182	2	neutral	AA	100	somatic	0	0.193770388016008	0.604315391858182
13	101241160	101244122	1	loss	A	-1	germline	1	0.0832703442690801	0.270046917112563
13	104700776	104733358	2	neutral	AA	43.1947	somatic	0	0.724903808360756	0.619637884851637
13	105704894	105737476	2	neutral	AA	100	somatic	0	0.153898046655766	0.529300044746761
13	107680548	107686472	2	neutral	AA	100	somatic	0	0.460204920838806	0.857376919439578
13	109493292	109499216	2	neutral	AA	100	somatic	0	0.943947209201012	0.986985803248598
13	111285302	111326770	2	neutral	AA	11.4145	somatic	0	0.356590052760283	0.759348700000052
14	0	18488804	3	gain	AAB	-1	somatic	0	0.0838240428772285	0.271007239436447
14	18491766	18681334	3	gain	AAB	-1	somatic	0	NA	NA
14	18681334	19957956	3	gain	AAB	0.401887	somatic	0	6.65748490205449e-28	0
14	20236384	20239346	1	loss	A	-1	somatic	0	0.0833213528978785	0.270135497006568
14	22623756	22629680	1	loss	A	-1	somatic	0	0.0144858241628056	0.0371615590697921
14	24081060	24143262	2	neutral	AA	20.1504	somatic	0	0.556518465599587	0.397444519609151
14	28491478	28509250	2	neutral	AA	100	somatic	0	0.501675803658504	0.582797383681431
14	34347352	34350314	1	loss	A	-1	somatic	0	0.0833490538938907	0.270183592115054
14	37300466	37303428	1	loss	A	-1	somatic	0	0.0833286419105523	0.270148153008184
14	47424582	47463088	2	neutral	AA	100	somatic	0	0.697220093829	0.320248443692415
14	52528108	52531070	1	loss	A	-1	somatic	0	0.083300946409958	0.270100062504356
14	59873868	59876830	1	loss	A	-1	somatic	0	0.0832725298342266	0.270050712958818
14	60587710	60593634	1	loss	A	-1	somatic	0	0.0143637943125246	0.036774948762577
14	63087638	63149840	2	neutral	AA	36.6091	somatic	0	0.160771822008914	0.381498514283548
14	63694848	63739278	2	neutral	AA	55.5044	somatic	0	0.53824451646498	0.17873184430308
14	63739278	63751126	2	neutral	AA	54.5681	somatic	0	0.0239958165656115	0.0728978251104809
14	64420538	64965546	2	neutral	AA	100	somatic	0	0.97947821328999	0.34216916707988
14	65839336	65913386	2	neutral	AA	27.2873	somatic	0	0.00356095208728494	0.00255406594584562
14	82968582	82971544	0	loss	-	-1	somatic	0	0.0832674302545005	0.270041856044808
14	83353642	83368452	2	neutral	AA	100	somatic	0	0.626983827913139	0.49222703129034
14	84831680	84837604	1	loss	A	-1	somatic	0	0.0144862890101545	0.0371440364791068
14	88794836	88797798	1	loss	A	-1	somatic	0	0.0833410344174757	0.270169669204139
14	89325034	89360578	2	neutral	AA	22.2706	somatic	0	0.95266697687337	0.495762839330851
14	89502754	89526450	2	neutral	AA	18.1899	somatic	0	0.51566019111934	0.813718765190126
14	98335438	98341362	1	loss	A	-1	somatic	0	0.0143370559259722	0.0366979116487176
14	99926032	99928994	7	gain	AAAABBB	8.8228	germline	1	0.0832907446842652	0.270082346525554
15	17078892	17081854	11	gain	-	-1	germline	1	0.0832761725460666	0.270057039455783
15	19806894	19812818	2	neutral	AA	5.11201	somatic	0	0.0212708746775043	0.0499173707897744
15	20271928	20274890	12	gain	AAAAAAAABBBB	30.1307	germline	1	0.0832761725460666	0.270057039455783
15	20340054	20343016	40	gain	AAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBB	100	germline	1	0.0832674302545005	0.270041856044798
15	25526516	25529478	3	gain	AAA	10.6629	somatic	0	0.0833249973396545	0.27014182495327
15	25624262	25644996	2	neutral	AA	54.568	somatic	0	0.424380382520851	0.533916721545542
15	26714278	26735012	2	neutral	AA	30.6972	somatic	0	0.348925332804486	0.333396822338458
15	27306678	27309640	0	loss	-	-1	germline	1	0.0832674302545005	0.270041856044808
15	34436212	34519148	1	loss	A	-1	germline	1	1.0534291850419e-18	0
15	45170500	45179386	2	neutral	AA	100	germline	1	0.397038452039189	0.721798099603027
15	45321562	45333410	2	neutral	AA	100	germline	1	0.105427331739709	0.220310901254763
15	49252136	49258060	1	loss	A	-1	somatic	0	0.0185265775924558	0.0494863124790476
15	51521028	51645432	2	neutral	AA	24.2938	somatic	0	0.896297749747327	0.685488530340269
15	52122314	52134162	2	neutral	AA	54.5678	somatic	0	0.0147007281718635	0.0314206609785321
15	53487796	53493720	2	neutral	AA	100	somatic	0	0.632234108410881	0.777745223769489
15	55839624	55972914	2	neutral	AA	41.2878	somatic	0	0.136233832480194	0.307347587587787
15	57687912	57690874	1	loss	A	-1	somatic	0	0.0832892873775016	0.270079815740691
15	61307476	61313400	2	neutral	AA	100	germline	1	0.770184599708397	0.594086710715239
15	65735666	65788982	2	neutral	AA	36.3916	somatic	0	0.19980348208213	0.113734691063834
15	66624266	66630190	2	neutral	AA	100	somatic	0	0.428781655835872	0.846927179393083
15	67050794	67077452	2	neutral	AA	100	somatic	0	0.590736021489404	0.789212375175214
15	67903850	67939394	2	neutral	AA	36.3798	germline	1	0.66085850231659	0.59530915725849
15	68354074	68377770	2	neutral	AA	55.2984	germline	1	0.858815083709729	0.85348995551461
15	69284142	69435204	2	neutral	AA	26.8619	somatic	0	0.172052138103387	0.495838833968339
15	70015756	70024642	2	neutral	AA	100	somatic	0	0.242304050059236	0.222392781543526
15	71588578	71591540	1	loss	A	-1	somatic	0	0.0833053188879518	0.27010765532635
15	74532806	74538730	2	neutral	AA	54.5678	somatic	0	0.903440466219946	0.838164829255863
15	74704602	74713488	2	neutral	AA	55.6317	somatic	0	0.129370239545613	0.315114668629094
15	74713488	74716450	1	loss	A	-1	somatic	0	0.0832783582351292	0.270060835405907
15	76591396	76603244	1	loss	A	-1	germline	1	0.000533494448239184	0.000672804352454093
15	78019080	78045738	2	neutral	AA	73.8164	somatic	0	0.0320522198851311	0.0112706845441511
15	78649986	78676644	2	neutral	AA	29.9403	somatic	0	0.192375605760079	0.315924333426688
15	79138716	79165374	2	neutral	AA	100	somatic	0	0.558104933073033	0.942047930513209
15	89766372	89781182	2	neutral	AA	100	somatic	0	0.754809006462542	0.737985297102745
15	91436940	91439902	1	loss	A	-1	somatic	0	0.0833060476523587	0.270108920811829
15	93166748	93172672	2	neutral	AA	100	somatic	0	0.303035540937919	0.724809817772275
15	93291152	93300038	2	neutral	AA	100	somatic	0	0.0982069260444601	0.0904724488520492
15	95097972	95145364	2	neutral	AA	100	germline	1	0.998186835986546	0.772334233191484
15	98450956	98462804	2	neutral	AA	100	somatic	0	0.054780757579813	0.235755574467934
15	100687266	100710962	2	neutral	AA	15.7741	germline	1	0.401858579806705	0.797348565946166
16	1024852	1027814	5	gain	AAAAA	2.96594	germline	1	0.083295116728486	0.270089938984032
16	1134446	1155180	2	neutral	AA	36.3786	somatic	0	0.712917936649486	0.874728579231408
16	3098252	3163416	2	neutral	AA	44.9857	somatic	0	0.364230370387955	0.717194221472698
16	4040168	4081636	2	neutral	AA	100	somatic	0	0.285146837017463	0.301882563288618
16	4573328	4582214	2	neutral	AA	100	somatic	0	0.0534167506735002	0.0780137286195619
16	6705968	6717816	2	neutral	AA	36.3786	somatic	0	0.271651809790097	0.226914280267371
16	7245052	7248014	2	neutral	AA	100	somatic	0	0.369679966161198	0.61211779962303
16	11590306	11593268	1	loss	A	-1	somatic	0	0.0845826790375224	0.272318696153798
16	12378198	12404856	2	neutral	AA	23.9574	somatic	0	0.536144691445139	0.711150541217729
16	19300392	19306316	2	neutral	AA	100	somatic	0	0.2966654682931	0.403269933946683
16	19934260	19954994	1	loss	A	-1	germline	1	4.6207946931797e-06	1.67423163532909e-06
16	20565166	20568128	1	loss	A	-1	somatic	0	0.0832892873775016	0.270079815740691
16	21557436	21584094	4	gain	AABB	5.04999	germline	1	2.04204253805441e-07	3.05410173817577e-08
16	22404568	22425302	2	neutral	AA	100	germline	1	0.926156408883372	0.599215949823385
16	22614870	22697806	4	gain	AAAB	22.96	germline	1	2.28351414999331e-19	0
16	22961424	22967348	2	neutral	AA	100	somatic	0	0.424071188981246	0.866313010708567
16	24445386	24448348	2	neutral	AA	100	somatic	0	0.306628949053475	0.552108646019815
16	26966048	26971972	2	neutral	AA	54.7947	somatic	0	0.627692282716935	0.860347750086194
16	28838032	28858766	2	neutral	AA	40.1438	somatic	0	0.0058340678491865	0.00866086913248387
16	29759214	29762176	2	neutral	AA	100	somatic	0	0.961496986855901	0.954364971330686
16	30867002	30884774	2	neutral	AA	54.5678	somatic	0	0.126210843166895	0.165453744987986
16	31198746	31255024	2	neutral	AA	54.5678	somatic	0	0.602974923487701	0.606908205616721
16	34063000	34065962	25	gain	AAAAAAAAAAAAAAAABBBBBBBBB	10.49	germline	1	0.0832674302545005	0.270041856044798
16	34068924	34071886	3	gain	AAA	7.80442	germline	1	0.0833089627616288	0.270113982797011
16	34074848	34083734	2	neutral	AA	69.4156	somatic	0	0.00911982250974702	0.0131094671319247
16	34083734	34086696	16	gain	AAAAAAAAAABBBBBB	60.527	germline	1	0.0832703442690801	0.270046917112554
16	34086696	34095582	2	neutral	AA	8.40303	germline	1	0.00341571607743622	0.00653374063564949
16	34095582	34098544	11	gain	AAAAAAABBBB	5.13119	germline	1	0.0832761725460666	0.270057039455783
16	34098544	34101506	4	gain	AABB	9.29943	germline	1	0.0833038613746306	0.270105124368365
16	34901246	34904208	4	gain	-	-1	somatic	0	0.0833031326257163	0.270103858895869
16	34904208	34954562	2	neutral	AA	100	germline	1	3.38925168794497e-05	0.000129502322117947
16	35896478	36089008	2	neutral	AA	3.20064	somatic	0	2.7167677016484e-11	1.09558163652324e-08
16	36121590	36124552	4	gain	-	-1	germline	1	0.0833038613746306	0.270105124368365
16	36124552	36127514	5	gain	-	-1	germline	1	0.0832980315279103	0.270095000709568
16	36237108	36245994	3	gain	-	-1	somatic	0	0.00270420711190181	0.00496428956074946
16	51491408	51497332	2	neutral	AA	100	somatic	0	0.744366344847232	0.896822091508918
16	54453408	54456370	2	neutral	AA	100	somatic	0	0.715703091078962	0.857455861983764
16	55324236	55327198	2	neutral	AA	100	somatic	0	0.0889909919918303	0.279844031513857
16	57291004	57293966	1	loss	A	-1	somatic	0	0.0832710727856325	0.270048182390321
16	58475804	58588360	2	neutral	AA	19.6703	somatic	0	0.371285997296349	0.65128363982423
16	58700916	58706840	2	neutral	AA	54.5704	somatic	0	0.850734395363093	0.98163261001956
16	60664722	60667684	2	neutral	AA	100	somatic	0	0.764552585210738	0.881694332611609
16	62207924	62216810	2	neutral	AA	36.5648	somatic	0	0.860563895425003	0.92004145947704
16	65320986	65323948	1	loss	A	-1	somatic	0	0.0832834583569921	0.270069692774303
16	66994516	66997478	2	neutral	AA	100	somatic	0	0.961583403209462	0.954351842080549
16	67889040	67939394	2	neutral	AA	28.5151	somatic	0	0.130799685505293	0.363054325130988
16	70149046	70163856	3	gain	AAB	4.8259	germline	1	0.000107952131353831	9.11124753167902e-05
16	72903706	72909630	2	neutral	AA	100	somatic	0	0.93141448314864	0.98855410749913
16	73504992	73510916	2	neutral	AA	54.5679	somatic	0	0.749045696829907	0.71510027312829
16	75513228	75531000	2	neutral	AA	54.5678	somatic	0	0.705092425269032	0.827525049785295
16	75602088	75945680	2	neutral	AA	37.3059	somatic	0	0.0902226578420189	0.242204673764661
16	78338976	78350824	1	loss	A	-1	germline	1	0.000533449824690847	0.000672486591538402
16	79434916	79458612	2	neutral	AA	100	somatic	0	0.640150402702098	0.537693554107709
16	79802204	79920684	2	neutral	AA	100	germline	1	0.854478487590082	0.672721022980074
16	80987004	81010700	2	neutral	AA	100	somatic	0	0.651307690135782	0.863776096088489
16	81253584	81256546	2	neutral	AA	100	somatic	0	0.907021332628223	0.938226670774843
16	84103028	84153382	2	neutral	AA	100	somatic	0	0.0385550948307537	0.140939561215347
16	84766516	84769478	2	neutral	AA	100	somatic	0	0.875812042330944	0.927661384907261
16	86842878	86854726	2	neutral	AA	27.288	somatic	0	0.506549849865316	0.676472868003028
16	88329802	88350536	2	neutral	AA	18.1893	germline	1	0.455327915302511	0.216697627129223
16	88756330	88842228	2	neutral	AA	9.42128	somatic	0	0.445654888117953	0.64806722052706
16	88978480	89301338	2	neutral	AA	7.34661	somatic	0	0.764164447288153	0.864598094382349
17	4238622	4291938	2	neutral	AA	46.1437	germline	1	0.991346258117227	0.922092383812933
17	5544864	5571522	2	neutral	AA	100	germline	1	0.965140605562478	0.890567991720188
17	9493210	9496172	2	neutral	AA	100	somatic	0	0.988573632584776	0.961274980607765
17	11459978	11581420	2	neutral	AA	27.301	somatic	0	0.7524356840933	0.719913392481174
17	13118698	13139432	2	neutral	AA	22.2591	somatic	0	0.398298602885149	0.411988869592302
17	15141744	15156554	1	loss	A	-1	somatic	0	0.000108805679005801	9.33681260136821e-05
17	16533884	16536846	2	neutral	AA	100	somatic	0	0.955980364658181	0.952877451778874
17	19288544	19472188	2	neutral	AA	100	somatic	0	0.984654677424147	0.931085904355463
17	21290856	21302704	4	gain	AABB	0.235141	germline	1	0.000532865982560033	0.000671610301289038
17	21853636	21859560	6	gain	-	-1	germline	1	0.0143155358305711	0.0366455932415807
17	21859560	21966192	4	gain	-	-1	germline	1	2.73371186263201e-25	0
17	21966192	21969154	5	gain	-	-1	germline	1	0.0832965741178703	0.270092469838145
17	21975078	21978040	28	gain	-	-1	germline	1	0.0832674302545005	0.270041856044798
17	21978040	21989888	12	gain	-	-1	germline	1	0.00270068610143269	0.00495887471133682
17	22123178	22158722	6	gain	AAAABB	0.181361	germline	1	1.98084734767356e-09	7.57470752787981e-11
17	26782404	26791290	4	gain	-	-1	germline	1	0.00270382966024809	0.00496337498528066
17	26809062	26826834	4	gain	-	-1	germline	1	0.000107756120254841	9.09705437132091e-05
17	26826834	26877188	3	gain	-	-1	germline	1	4.96288178907445e-12	5.72875080706581e-14
17	28248594	28325606	2	neutral	AA	13.9345	somatic	0	0.0165543516853114	0.0102621814986527
17	32273952	32279876	2	neutral	AA	11.68	somatic	0	0.676691160442372	0.719062782374862
17	33230678	33257336	2	neutral	AA	100	somatic	0	0.281035574088703	0.35389862269974
17	34042266	34048190	2	neutral	AA	54.5678	somatic	0	0.113222972980123	0.16677426889757
17	35538076	35606202	2	neutral	AA	33.7237	somatic	0	0.00219114685863825	0.0268180047512965
17	39433106	39441992	2	neutral	AA	54.5687	somatic	0	0.644885688028358	0.509878305379593
17	39788546	39791508	2	neutral	AA	100	somatic	0	0.288832685834223	0.534137460817863
17	41553898	41595366	2	neutral	AA	26.6713	somatic	0	0.944021966128947	0.826664082446457
17	42018932	42024856	2	neutral	AA	100	somatic	0	0.653815543923528	0.831705268768606
17	43357756	43363680	3	gain	AAB	4.54953	somatic	0	0.0143276157960919	0.0366677599572952
17	47685238	47697086	2	neutral	AA	54.568	somatic	0	0.253630830962563	0.600708480931453
17	49118846	49124770	2	neutral	AA	100	somatic	0	0.89131118594387	0.815122919014058
17	50587998	50593922	2	neutral	AA	100	somatic	0	0.410148114736865	0.470886909105388
17	50780528	50810148	2	neutral	AA	37.1132	somatic	0	0.154394626050638	0.127493972067608
17	62684806	62690730	2	neutral	AA	100	somatic	0	0.92585820639171	0.86754995721682
17	66796062	66801986	7	gain	AAAAAAA	100	germline	1	0.0143142708304272	0.0366445544645149
17	69997984	70104616	2	neutral	AA	68.389	somatic	0	0.978805478997517	0.981735001935705
17	71129468	71173898	2	neutral	AA	26.1843	somatic	0	0.874621395219593	0.97108894607581
17	71212404	71286454	2	neutral	AA	54.8558	somatic	0	0.367631277050753	0.455714339736022
17	75347356	75365128	2	neutral	AA	100	somatic	0	0.248885333140766	0.185941492368619
17	75486570	75504342	2	neutral	AA	100	germline	1	0.3372010503076	0.79247511231355
17	78217534	78229382	2	neutral	AA	100	somatic	0	0.468462033254373	0.783821809558439
17	78421912	78424874	2	neutral	AA	100	germline	1	0.700002501721959	0.849082458766214
17	82583522	82586484	4	gain	AABB	10.7102	somatic	0	0.0833024038819661	0.270102593427701
17	82844178	83128530	2	neutral	AA	72.3391	somatic	0	0.0218102475880297	0.0644430012091478
17	83128530	83202580	2	neutral	AA	40.4772	somatic	0	5.87848720806781e-10	1.13629691211869e-08
18	4508164	4511126	3	gain	-	-1	somatic	0	0.0833475957607797	0.270181060637747
18	5304942	5310866	1	loss	A	-1	somatic	0	0.0149418204871041	0.0384398059570374
18	24937078	24940040	1	loss	A	-1	somatic	0	0.0834219868984287	0.270310188052198
18	29593342	29599266	1	loss	A	-1	somatic	0	0.0147721906859372	0.0379119118540825
18	40680108	40686032	1	loss	A	-1	somatic	0	0.0143330259313356	0.0366823132391251
18	41284356	41287318	0	loss	-	-1	germline	1	0.083266701763763	0.270040590788687
18	41287318	41290280	1	loss	A	-1	germline	1	0.083494241481316	0.270435560663887
18	44077522	44080484	1	loss	A	-1	somatic	0	0.0834665014076474	0.270387432826783
18	46959548	46962510	3	gain	-	-1	somatic	0	0.0833162508963105	0.270126638062925
18	50167394	50173318	1	loss	A	-1	somatic	0	0.0147731956971041	0.03786734683842
18	51079690	51085614	2	neutral	AA	54.5678	somatic	0	0.0229935790794203	0.0630843231698639
18	51449940	51452902	1	loss	A	-1	somatic	0	0.0834154208120419	0.270298792645545
18	51873506	51900164	2	neutral	AA	100	somatic	0	0.111523961684863	0.227556866243869
18	53425594	53431518	1	loss	A	-1	somatic	0	0.015327164407487	0.039580392043769
18	53680326	53683288	1	loss	A	-1	somatic	0	0.0833162508963105	0.270126638062934
18	57759000	57764924	2	neutral	AA	100	germline	1	0.0747001353805777	0.215828597773411
18	63330522	63345332	2	neutral	AA	100	somatic	0	0.930862659636762	0.947876956573166
18	63745202	63751126	2	neutral	AA	100	somatic	0	0.510397264684608	0.879540171997987
18	64544942	64547904	1	loss	A	-1	somatic	0	0.083309691551857	0.270115248304138
18	67074490	67145578	2	neutral	AA	11.1396	germline	1	0.201433809352239	0.50680499164138
18	69103460	69133080	2	neutral	AA	100	somatic	0	0.557169184382105	0.673611580254533
18	69929858	69935782	2	neutral	AA	100	somatic	0	0.984220918923383	0.983236590705188
18	70569650	70584460	2	neutral	AA	13.6421	germline	1	0.350906066340007	0.591936017472946
18	71470098	71544148	2	neutral	AA	100	somatic	0	0.755865494645709	0.166714793462915
18	71798880	71813690	2	neutral	AA	100	germline	1	0.0552191077744173	0.093168122552082
18	74615742	74618704	3	gain	-	-1	germline	1	0.0833322866105748	0.270154481171271
18	77956878	78007232	2	neutral	AA	6.46818	somatic	0	0.603987117521501	0.876573455409656
18	79197956	79200918	4	gain	AABB	15.466	germline	1	0.0833060476523587	0.270108920811819
18	79464536	79470460	2	neutral	AA	54.5678	germline	1	0.0511989776430264	0.117743553996621
18	79520814	79523776	1	loss	A	-1	somatic	0	0.0833687407133292	0.270217768752919
19	921182	950802	2	neutral	AA	100	somatic	0	0.220966798941513	0.109804903618189
19	6024708	6160960	2	neutral	AA	9.6464	germline	1	0.0913911625457114	0.311001715253373
19	7449430	7452392	11	gain	AAAAAAABBBB	7.17071	germline	1	0.0832761725460666	0.270057039455783
19	8343954	8349878	1	loss	A	-1	somatic	0	0.0143851473815275	0.0368455164021376
19	8880076	8921544	2	neutral	AA	1.79303	somatic	0	0.100889867224152	0.153217789382141
19	10897198	10977172	2	neutral	AA	40.8174	somatic	0	0.0321830914129041	0.0484382671334919
19	11223018	11228942	2	neutral	AA	36.3786	somatic	0	0.340369444902132	0.598952685135442
19	12289338	12298224	2	neutral	AA	12.1262	somatic	0	0.609539282655476	0.484277794723431
19	12443362	12461134	2	neutral	AA	54.5678	somatic	0	0.185747834067382	0.125881805188906
19	12582576	12588500	1	loss	A	-1	somatic	0	0.0143096716610823	0.0366414382878966
19	14851468	14863316	2	neutral	AA	100	germline	1	0.0424935470326823	0.0408721198780813
19	22955500	22961424	1	loss	A	-1	somatic	0	0.0145189774736939	0.037265089567676
19	24329868	24403918	4	gain	AABB	0.186985	germline	1	9.94101433109789e-17	0
19	24415766	24418728	3	gain	AAB	100	somatic	0	0.0833468667019726	0.270179794905589
19	24904496	24907458	4	gain	-	-1	somatic	0	0.0833031326257163	0.270103858895869
19	27244476	27333336	2	neutral	AA	1.26003	somatic	0	1.92837554369709e-09	3.88435107412377e-08
19	27336298	27342222	4	gain	AAAB	4.56389	germline	1	0.0143215171662965	0.0366601388259202
19	27342222	27345184	2	neutral	AA	15.5909	germline	1	0.0965535713760592	0.292407840057101
19	27345184	27380728	6	gain	AAAABB	0.12127	germline	1	9.24667562551379e-09	5.59301605029816e-10
19	27380728	27383690	4	gain	AAAB	3.8697	germline	1	0.0833031326257163	0.270103858895869
19	27383690	27398500	6	gain	AAAABB	0.241534	germline	1	0.000107675222025792	9.08953622048569e-05
19	27398500	27401462	3	gain	AAB	3.28204	germline	1	0.0833249973396545	0.27014182495327
19	27469588	27472550	1	loss	A	-1	somatic	0	0.083271801307348	0.270049447672406
19	34391782	34394744	4	gain	AAAB	25.9536	somatic	0	0.0833031326257163	0.270103858895869
19	36216374	36234146	2	neutral	AA	54.5678	somatic	0	0.0326848608542246	0.181954267846799
19	44752858	44782478	2	neutral	AA	21.8899	somatic	0	0.297052293317036	0.741784875292343
19	48707128	48778216	2	neutral	AA	81.1966	somatic	0	0.939179194288368	0.702366666101444
19	48798950	48816722	2	neutral	AA	54.5678	somatic	0	0.0233283718236863	0.0192302217299632
19	50901970	50904932	1	loss	A	-1	somatic	0	0.0832725298342266	0.270050712958818
19	51417358	51426244	2	neutral	AA	100	somatic	0	0.0966330412816436	0.116031126007076
19	51630622	51645432	1	loss	A	-1	germline	1	0.000108038904631962	9.15589902334979e-05
19	55327198	55333122	2	neutral	AA	100	germline	1	0.0918832065497357	0.284767349774516
19	56082508	56088432	2	neutral	AA	100	somatic	0	0.0321104631711635	0.0847702908425494
19	56088432	56103242	2	neutral	AA	16.3601	somatic	0	0.339473686261237	0.20823103329258
19	58028542	58034466	2	neutral	AA	54.5678	somatic	0	0.858158506357294	0.89369396465491
19	58348438	58354362	2	neutral	AA	54.5678	somatic	0	0.433391612119368	0.511088741843761
20	6821486	6842220	2	neutral	AA	100	somatic	0	0.186334842130704	0.540120852875173
20	10897198	10900160	2	neutral	AA	100	somatic	0	0.52688049849756	0.73992074419392
20	17327700	17348434	2	neutral	AA	100	somatic	0	0.432024724271742	0.421109332056479
20	20310434	20369674	2	neutral	AA	23.011	somatic	0	0.965109607737136	0.546778293071603
20	21169414	21184224	2	neutral	AA	54.5678	somatic	0	0.515474054991909	0.434710340778368
20	22644490	22662262	2	neutral	AA	51.0772	somatic	0	0.453403240515029	0.250817199286028
20	23835214	23844100	2	neutral	AA	36.3786	somatic	0	0.898677941421394	0.804354666241142
20	23935922	24036630	2	neutral	AA	50.5501	somatic	0	0.0354370376905549	0.128163189248104
20	24368374	24371336	2	neutral	AA	100	somatic	0	0.928817836229477	0.945025413860135
20	24913382	24945964	2	neutral	AA	100	somatic	0	0.207065084928321	0.275950262828887
20	25855298	26317370	2	neutral	AA	1.63463	somatic	0	0.93816625022134	0.51111430629575
20	26320332	26323294	1	loss	A	-1	somatic	0	0.083300946409958	0.270100062504356
20	28781754	28787678	8	gain	-	-1	germline	1	0.0143125459891406	0.0366428232266562
20	28802488	28900234	8	gain	-	-1	germline	1	9.23845552178861e-09	5.59243540365628e-10
20	29264560	29270484	4	gain	-	-1	germline	1	0.014317836083481	0.0366494023112481
20	29276408	29314914	3	gain	-	-1	germline	1	1.98787615080538e-09	7.63635821243724e-11
20	29688126	29859922	3	gain	-	-1	somatic	0	1.78300714628863e-09	1.36370620351656e-07
20	29889542	29892504	5	gain	-	-1	somatic	0	0.0832965741178703	0.270092469838145
20	31166164	31169126	6	gain	-	-1	somatic	0	0.083295116728486	0.270089938984032
20	31169126	31183936	3	gain	-	-1	somatic	0	0.00012080888005506	0.000127471040894611
20	31183936	31189860	18	gain	-	-1	germline	1	0.0143105913906554	0.0366438619607838
20	31189860	31240214	3	gain	AAB	1.68299	germline	1	2.22467881718537e-05	1.24014406903683e-05
20	31240214	31243176	58	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBB	100	germline	1	0.0832659732781884	0.270039325536885
20	31243176	31246138	3	gain	AAA	13.586	germline	1	0.0833884312990221	0.270251948545792
20	33319538	33322500	2	neutral	AA	100	somatic	0	0.178350272059042	0.408799177373807
20	35526228	35535114	2	neutral	AA	36.3915	somatic	0	0.802803847315355	0.994905221532989
20	43642108	43648032	1	loss	A	-1	somatic	0	0.01438734198398	0.0368705737605153
20	43648032	43698386	2	neutral	AA	32.1551	somatic	0	0.0221621993644469	0.00706934562368211
20	51236676	51245562	2	neutral	AA	18.1893	somatic	0	0.424568680115504	0.452280190445142
20	52308920	52314844	2	neutral	AA	54.5679	somatic	0	0.0472985586897057	0.136040744126232
20	52628816	52658436	2	neutral	AA	100	somatic	0	0.427849824899531	0.601110492848812
20	56174330	56189140	2	neutral	AA	100	somatic	0	0.259753286967415	0.279287125340772
20	57190296	57202144	2	neutral	AA	27.9933	somatic	0	0.631292428344909	0.644740695345207
20	61328210	61340058	2	neutral	AA	5.86792	germline	1	0.15424910807794	0.205247241953215
20	62329366	62335290	2	neutral	AA	54.578	somatic	0	0.296328122868763	0.278561403980924
20	63348294	63360142	2	neutral	AA	12.8068	somatic	0	0.252338602424716	0.655449921673717
21	8989670	8995594	9	gain	AAAAAABBB	5.97576	somatic	0	0.0143111662481186	0.0366393609656219
21	10651352	10689858	6	gain	AAAABB	1.60669	somatic	0	1.97985344067216e-09	7.57213181046268e-11
21	10689858	10695782	29	gain	AAAAAAAAAAAAAAAAAAAAABBBBBBBB	100	germline	1	0.0143070277290041	0.036633129617041
21	10695782	10737250	6	gain	AAAAAB	5.66525	germline	1	9.16154303655667e-11	1.38689060236175e-12
21	10752060	10755022	14	gain	AAAAAAAAABBBBB	5.57138	germline	1	0.0832703442690801	0.270046917112554
21	16065888	16071812	2	neutral	AA	100	germline	1	0.101941496446723	0.129522185184531
21	16969298	16975222	1	loss	A	-1	somatic	0	0.0144413759094218	0.0369622294345525
21	20585900	20588862	1	loss	A	-1	somatic	0	0.0832856442009565	0.270073488854242
21	22428264	22463808	2	neutral	AA	80.06	somatic	0	0.202951797104965	0.20323288772651
21	23924074	23927036	1	loss	A	-1	somatic	0	0.0833585322627739	0.270200047139453
21	25565022	25606490	2	neutral	AA	100	somatic	0	0.910390848769651	0.685187430093902
21	27164502	27170426	2	neutral	AA	100	somatic	0	0.81062876995245	0.975516200077619
21	32750834	32845618	2	neutral	AA	54.5785	somatic	0	0.640727406059825	0.91124679947209
21	39960342	39972190	2	neutral	AA	54.5678	somatic	0	0.436130058795318	0.928504593610157
21	43334060	43337022	3	gain	AAA	8.81669	somatic	0	0.0833089627616288	0.270113982797011
21	44575138	44584024	2	neutral	AA	36.3786	somatic	0	0.284462342406497	0.744739687642876
21	45795482	45798444	3	gain	AAB	3.94625	germline	1	0.0833075051966651	0.27011145179576
21	45801406	45899152	2	neutral	AA	60.3338	somatic	0	0.501888104713133	0.662813238212411
21	45967278	45970240	1	loss	A	-1	germline	1	0.0832783582351292	0.270060835405907
21	46041328	46091682	2	neutral	AA	4.747	somatic	0	0.730694963921072	0.7994605732554
22	10728364	10731326	10	gain	-	-1	germline	1	0.0832783582351292	0.270060835405898
22	11625850	11628812	4	gain	AABB	42.7043	germline	1	0.0833038613746306	0.270105124368365
22	16560542	16566466	2	neutral	AA	41.348	somatic	0	0.305461075886503	0.749991743534347
22	17958606	17985264	2	neutral	AA	66.7974	somatic	0	0.0796396954480694	0.242900609110555
22	18100782	18109668	2	neutral	AA	13.6734	germline	1	0.380642363018105	0.751531835831308
22	20034968	20079398	2	neutral	AA	8.79878	germline	1	0.415941134265961	0.859478288515559
22	23296130	23610102	1	loss	A	100	somatic	0	2.64845127799521e-18	0
22	25985626	26018208	2	neutral	AA	54.5681	somatic	0	0.557690121106204	0.635381409746959
22	33230678	33473562	2	neutral	AA	21.9541	somatic	0	0.0422262682266693	0.0277622955114546
22	35247800	35250762	1	loss	A	-1	somatic	0	0.08355339655938	0.270538169809193
22	36746572	36752496	0	loss	-	-1	germline	1	0.0143066829000698	0.0366324373022198
22	43277782	43834638	2	neutral	AA	4.54741	germline	1	0.11668845131932	0.104162543368645
22	44166382	44172306	1	loss	A	-1	somatic	0	0.0148252428635976	0.0381164265718372
22	47625998	47670428	2	neutral	AA	100	somatic	0	0.836452685937186	0.600915882704081
22	48846342	48861152	2	neutral	AA	11.982	germline	1	0.428684581376979	0.263772978084903
22	49755676	49776410	2	neutral	AA	23.3947	somatic	0	0.750313395232048	0.795823496304886
22	50345114	50348076	1	loss	A	-1	somatic	0	0.0833417634349587	0.270170934901675
22	50641314	50644276	4	gain	AAAA	20.5802	germline	1	0.0833031326257163	0.270103858895869
X	3302630	3427034	2	neutral	AA	68.9809	somatic	0	0.0290026186111705	0.102743720516972
X	37975802	37987650	2	neutral	AA	100	somatic	0	0.863622706021574	0.827157009281475
X	45312676	45363030	2	neutral	AA	100	somatic	0	0.00653177414718367	0.00207906475714259
X	50967134	51085614	2	neutral	AA	27.2973	somatic	0	0.00490290227347898	0.00182598517964949
X	52365198	52507374	2	neutral	AA	100	somatic	0	0.867658758714359	0.98964649197906
X	58431374	62672958	2	neutral	AA	1.78733	somatic	0	1.86088108198391e-18	0
X	68425162	68570300	2	neutral	AA	100	somatic	0	0.098674225853037	0.181908074791617
X	70534106	70578536	2	neutral	AA	99.0969	germline	1	0.81836576032709	0.423450423400992
X	84849452	84879072	4	gain	AABB	79.1765	germline	1	0.000107726181228403	9.0918984316235e-05
X	84884996	84914616	6	gain	AAAAAB	22.4095	germline	1	2.04009699240573e-07	3.05202466632792e-08
X	84914616	85068640	6	gain	AAAAAB	24.2139	somatic	0	7.40570736999433e-32	0
X	85068640	85092336	6	gain	AAAABB	7.2137	germline	1	2.21306657264181e-05	1.23041105792865e-05
X	85092336	85113070	6	gain	AAAAAB	75.3265	germline	1	4.60216995112303e-06	1.66550681979238e-06
X	85113070	85142690	6	gain	-	-1	germline	1	9.65739209810892e-07	2.25453492763705e-07
X	87207204	87568568	2	neutral	AA	15.6934	somatic	0	0.0277882668589366	0.107451454094281
X	87808490	87912160	2	neutral	AA	21.8558	somatic	0	0.0529359483780019	0.16630235633953
X	97538660	97609748	2	neutral	AA	55.3739	somatic	0	0.851925087381852	0.998470007181843
X	108773526	108776488	0	loss	-	-1	somatic	0	0.083266701763763	0.270040590788687
X	115402482	115405444	1	loss	A	-1	somatic	0	0.0832703442690801	0.270046917112563
X	125271866	125274828	0	loss	-	-1	germline	1	0.083266701763763	0.270040590788687
X	126776562	126779524	0	loss	-	-1	somatic	0	0.0832688872514644	0.270044386570031
X	141787978	141793902	1	loss	A	-1	somatic	0	0.0143214021198232	0.036674689461364
X	145354226	145371998	2	neutral	AA	54.5686	somatic	0	0.984427321421093	0.902599708115034
X	151325618	151485566	2	neutral	AA	76.907	somatic	0	0.168080197854738	0.568885545533425
X	155164370	155193990	1	loss	A	-1	somatic	0	0.000468843115874877	0.000248426849187466
X	155558316	155567202	1	loss	A	-1	somatic	0	0.00273954251830295	0.00506283154682807
