chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	16882074	16942893	4	gain	AABB	1.42078	germline	1	2.04036064762732e-07	3.05211823592444e-08
1	25966512	25995321	2	neutral	AA	54.5873	somatic	0	0.445711285225016	0.606619190214101
1	27951132	27986343	2	neutral	AA	54.5678	somatic	0	0.904069737446761	0.899073624701195
1	48853662	49084134	2	neutral	AA	40.5322	germline	1	0.000200910090474456	0.00117594175469171
1	55662189	55668591	1	loss	A	-1	germline	1	0.0143158628428723	0.0366584916297222
1	72300987	72345801	1	loss	A	-1	germline	1	1.10363772573697e-09	2.65893973505626e-11
1	109643853	109650255	1	loss	A	-1	germline	1	0.0150033429949245	0.0387367601821178
1	109650255	116519601	2	neutral	AA	5.92105	somatic	0	1.49701422071906e-08	7.24487331238421e-08
1	125069472	125072673	3	gain	-	-1	germline	1	0.0832969437632029	0.270093057522886
1	125079075	125082276	11	gain	-	-1	germline	1	0.0832653071733943	0.270038114404638
1	125082276	125085477	6	gain	-	-1	germline	1	0.0832850789011628	0.270072452897382
1	125149497	125155899	4	gain	-	-1	germline	1	0.014315488313369	0.0366460855067242
1	125162301	125165502	5	gain	-	-1	germline	1	0.0832914066572059	0.270083441888196
1	152473233	152783730	2	neutral	AA	61.3627	somatic	0	0.10784481844685	0.259551020754857
1	152786931	152799735	1	loss	A	-1	germline	1	0.0148741761379018	0.0383349518100311
1	158462304	158628756	2	neutral	AA	52.2833	somatic	0	0.552396306570471	0.572194697814862
1	162162660	162188268	2	neutral	AA	100	somatic	0	0.534379017298537	0.52206311701901
1	175193931	175302765	2	neutral	AA	30.4183	somatic	0	0.273849557417764	0.455237037736133
1	180462777	180536400	2	neutral	AA	54.5678	somatic	0	0.912762010910526	0.974111046355823
1	187745052	187754655	1	loss	A	-1	germline	1	0.0175389477781878	0.0459483511914884
1	194086233	194415936	2	neutral	AA	45.3457	somatic	0	0.866456927322189	0.750941427132908
1	224012382	224015583	8	gain	AAAAAAAA	3.8512	somatic	0	0.0832716337125503	0.270049102375551
1	231457908	231765204	2	neutral	AA	13.6622	germline	1	0.0521397903899317	0.142510570838217
1	234777345	234783747	6	gain	AAAABB	3.18086	somatic	0	0.0143126172076482	0.0366415751001204
1	236096157	236099358	5	gain	AAABB	9.95415	germline	1	0.0832921976540932	0.270084815534996
1	240183834	240187035	4	gain	AABB	10.9676	germline	1	0.0832961527298052	0.270091683845489
2	3178593	3181794	5	gain	-	-1	germline	1	0.0832921976540932	0.270084815534996
2	18293715	18296916	0	loss	-	-1	germline	1	0.0832668887716792	0.270040861366763
2	34471569	34503579	1	loss	A	-1	germline	1	8.74787462326743e-07	1.72146537247286e-07
2	52522008	52557219	1	loss	A	-1	germline	1	3.82893673373143e-07	2.76530489617954e-08
2	77745888	77774697	4	gain	-	-1	germline	1	2.21378621573825e-05	1.23126498708936e-05
2	89772045	89791251	4	gain	-	-1	germline	1	0.000107674341365613	9.08965430549413e-05
2	89794452	89823261	4	gain	-	-1	germline	1	9.65719439021832e-07	2.25514052765163e-07
2	89823261	89826462	6	gain	-	-1	germline	1	0.0832858698493714	0.270073826503385
2	89826462	89842467	31	gain	-	-1	germline	1	0.000107518188262404	9.08056810587921e-05
2	89842467	89852070	4	gain	-	-1	germline	1	0.00270239986320702	0.00496059452804931
2	91410957	91414158	4	gain	-	-1	germline	1	0.0832921976540932	0.270084815534996
2	94499922	94541535	3	gain	-	-1	somatic	0	0.00251680320918506	0.0226856775572449
2	106260396	106269999	1	loss	A	-1	germline	1	0.0210387595924155	0.0575012756936001
2	109198914	109202115	13	gain	-	-1	germline	1	0.0832653071733943	0.270038114404638
2	117041364	117044565	0	loss	-	-1	germline	1	0.0832653071733943	0.270038114404632
2	126916449	126919650	0	loss	-	-1	germline	1	0.0832676795799476	0.270042234855478
2	128881863	128888265	1	loss	A	-1	germline	1	0.021721357364695	0.0535984653950753
2	132242913	132246114	4	gain	-	-1	germline	1	0.0832953617024927	0.270090310173191
2	146103243	146119248	1	loss	A	-1	germline	1	0.000276092042715751	0.000271418719347327
2	169460940	169470543	1	loss	A	-1	somatic	0	0.00966344899439742	0.0239654593491097
2	172040946	172047348	1	loss	A	-1	germline	1	0.0205451910408777	0.0558942209318394
2	176400708	176403909	0	loss	-	-1	germline	1	0.0832653071733943	0.270038114404632
2	179201583	179211186	1	loss	A	-1	germline	1	0.00499180063362772	0.00835753281207074
2	183929460	183939063	1	loss	A	-1	germline	1	0.00543581510898172	0.00917611779385863
2	207485619	207495222	1	loss	A	-1	germline	1	0.00584816484308733	0.00942208459737737
2	226297896	226307499	1	loss	A	-1	somatic	0	0.00577745602087997	0.0098945912870736
2	239149911	239153112	2	neutral	AA	24.7498	somatic	0	0.289055290202811	0.534369133462887
2	239229936	239284353	2	neutral	AA	100	somatic	0	0.697287357450443	0.367753913006836
2	239345172	239351574	2	neutral	AA	100	germline	1	0.193933744289844	0.321983747346955
2	240318276	240321477	2	neutral	AA	54.5678	somatic	0	0.158674542380796	0.383277270532756
2	241035300	241041702	2	neutral	AA	36.6087	somatic	0	0.796043609206434	0.843013286738764
2	241288179	241291380	2	neutral	AA	100	somatic	0	0.641649228953266	0.815867680839222
2	241438626	241441827	2	neutral	AA	100	somatic	0	0.66695208792907	0.830673811690197
2	241560264	241563465	2	neutral	AA	36.3849	somatic	0	0.265705261900668	0.50993366718111
2	241579470	241592274	2	neutral	AA	8.1832	somatic	0	0.35769254835854	0.555644031055607
2	241739520	241745922	2	neutral	AA	43.4294	somatic	0	0.644139614044946	0.888619936709616
3	11357148	11481987	2	neutral	AA	30.4916	somatic	0	0.057885678476137	0.231671404044604
3	13133703	13140105	2	neutral	AA	100	somatic	0	0.730119651119726	0.819108205491217
3	13585044	13594647	1	loss	A	-1	germline	1	0.00444935471026415	0.00881478832470928
3	21520323	21539529	2	neutral	AA	36.3786	somatic	0	0.934118828423514	0.834111736744315
3	32061216	32067618	1	loss	A	-1	germline	1	0.0211437117971098	0.0562290711965837
3	46750605	46798620	2	neutral	AA	54.5735	somatic	0	0.0593329900921572	0.0714883715669518
3	68501400	68527008	2	neutral	AA	54.6171	somatic	0	0.533554021103751	0.966033971719221
3	68584626	68587827	1	loss	A	-1	germline	1	0.0832850789011628	0.270072452897375
3	68690259	68699862	0	loss	-	-1	germline	1	0.0143139902817872	0.0366551077772591
3	72867564	72912378	2	neutral	AA	13.6438	somatic	0	0.366110449225255	0.227731784569287
3	75742062	76017348	2	neutral	AA	2.21219	somatic	0	0.248106000275161	0.303286259851406
3	79733709	79845744	2	neutral	AA	31.4328	somatic	0	0.80754559214323	0.872910767826906
3	88043505	88078716	2	neutral	AA	70.2665	somatic	0	0.727611578103745	0.614375028522395
3	89352714	89368719	1	loss	A	-1	germline	1	0.000164416692396291	0.000192507464696012
3	90668325	90713139	1	loss	A	-1	germline	1	1.84140154461702e-06	3.24757140068854e-08
3	98680428	98696433	1	loss	A	-1	germline	1	0.00199978559849346	0.00174310406879608
3	99179784	99182985	0	loss	-	-1	germline	1	0.0832660979694948	0.270039487883148
3	99224598	99231000	1	loss	A	-1	germline	1	0.0276535972122827	0.0560907914241974
3	105889080	105953100	2	neutral	AA	36.3805	somatic	0	0.36756510320887	0.579742572742679
3	109006854	109234125	2	neutral	AA	60.88	somatic	0	0.558353121490525	0.457136414005301
3	116823696	127156524	2	neutral	AA	8.64816	somatic	0	6.07143641764881e-15	8.47522052538352e-12
3	131020131	131045739	2	neutral	AA	54.5728	somatic	0	0.727364449113766	0.754611163976788
3	136301781	136308183	0	loss	-	-1	germline	1	0.0143112442496969	0.0366464613958656
3	155523786	155530188	2	neutral	AA	100	germline	1	0.973055296106227	0.78203281186196
3	162793257	162908493	1	loss	A	-1	germline	1	6.4850398426113e-22	0
3	163715145	163743954	2	neutral	AA	100	somatic	0	0.631343666668698	0.62303308522043
3	166804110	166816914	3	gain	AAB	6.83692	germline	1	0.000534190503663653	0.000675537433755591
3	167181828	167207436	2	neutral	AA	62.2447	somatic	0	0.126973743067734	0.123178429940425
3	177431430	177457038	2	neutral	AA	27.2856	somatic	0	0.607793033921545	0.816159106914273
3	185453136	185456337	1	loss	A	-1	germline	1	0.0832906156664035	0.270082068246489
3	186067728	186083733	2	neutral	AA	100	somatic	0	0.218727404582346	0.491381042012516
3	190446696	190478706	2	neutral	AA	100	somatic	0	0.0938265852109691	0.190386065751403
3	191346177	191355780	1	loss	A	-1	germline	1	0.00685056189582865	0.00978133006200776
4	124839	134442	1	loss	A	-1	germline	1	0.0206725376412165	0.0563217842970424
4	553773	556974	4	gain	AAAB	28.5549	germline	1	0.0832953617024927	0.270090310173191
4	2660031	2746458	2	neutral	AA	62.2319	somatic	0	0.109923839138939	0.201096053704811
4	4587033	4596636	2	neutral	AA	100	somatic	0	0.957622440839162	0.91168574536658
4	6946170	6955773	2	neutral	AA	100	somatic	0	0.184204350567063	0.544184994152184
4	10207989	10233597	1	loss	A	-1	germline	1	5.80474692618515e-06	1.29585624997208e-06
4	10390446	10400049	1	loss	A	-1	germline	1	0.00495053996212116	0.00797252358346734
4	14404500	14455716	2	neutral	AA	93.3662	somatic	0	0.573205505475462	0.691700800197913
4	29001060	29023467	2	neutral	AA	22.4486	somatic	0	0.217899264861916	0.203842909134881
4	31590669	31741116	2	neutral	AA	16.3325	somatic	0	0.998849654426849	0.971100402932729
4	31814739	31817940	0	loss	-	-1	somatic	0	0.0832660979694948	0.270039487883148
4	36158496	36225717	2	neutral	AA	100	somatic	0	0.159144031638607	0.235566625684196
4	39381903	39407511	2	neutral	AA	100	somatic	0	0.365757119844194	0.302659255872742
4	40294188	40297389	4	gain	AABB	100	germline	1	0.0832961527298052	0.270091683845489
4	48232668	48258276	2	neutral	AA	54.5687	somatic	0	0.858090810631272	0.539047341835405
4	49148154	49151355	107	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB	100	germline	1	0.0832653071733943	0.270038114404638
4	49653912	49657113	12	gain	AAAAAAAABBBB	1.95228	germline	1	0.0832653071733943	0.270038114404638
4	60463689	60466890	0	loss	-	-1	germline	1	0.0832660979694948	0.270039487883148
4	61071879	61078281	1	loss	A	-1	germline	1	0.0207104786002833	0.0562928655347711
4	62803620	62810022	1	loss	A	-1	germline	1	0.0213233633955596	0.0503923047060703
4	63200544	63203745	0	loss	-	-1	germline	1	0.0832660979694948	0.270039487883148
4	63267765	63290172	1	loss	A	-1	germline	1	2.08609113713205e-05	7.51844226831722e-06
4	63827940	63850347	1	loss	A	-1	germline	1	6.9242743265621e-05	4.46381851747502e-05
4	67761969	67774773	2	neutral	AA	100	somatic	0	0.868528793073703	0.714585554768873
4	68517405	68623038	1	loss	A	-1	germline	1	1.23120437942791e-13	1.11022302462516e-16
4	69266439	69365670	1	loss	A	-1	germline	1	3.69659576219741e-06	5.81340868954783e-06
4	70610859	70636467	2	neutral	AA	54.5679	somatic	0	0.218829351500085	0.550740528890258
4	72425826	72723519	2	neutral	AA	100	somatic	0	0.44589751999099	0.820277586730938
4	77704275	77825913	2	neutral	AA	100	somatic	0	0.0851156402269878	0.112921907824736
4	86286156	86919954	2	neutral	AA	24.341	somatic	0	0.367509693343793	0.132362477789756
4	97432038	97441641	1	loss	A	-1	somatic	0	0.00762511316682319	0.0122192989382343
4	101372469	101433288	2	neutral	AA	100	somatic	0	0.0913791494143342	0.156924211175339
4	106132356	106145160	1	loss	A	-1	germline	1	0.00196099921469902	0.00199436581221202
4	114586197	114589398	0	loss	-	-1	germline	1	0.0832660979694948	0.270039487883148
4	115245603	115255206	1	loss	A	-1	germline	1	0.00413476339007834	0.00742017469790379
4	120584871	120610479	2	neutral	AA	100	somatic	0	0.253308029278648	0.412024769838221
4	121586784	121638000	2	neutral	AA	100	somatic	0	0.277094119763124	0.208728803722133
4	123347334	123353736	1	loss	A	-1	germline	1	0.0284930609992824	0.0564047919753362
4	146282499	146288901	3	gain	AAB	11.0728	germline	1	0.0156552589309973	0.0407045164581371
4	147658929	147770964	2	neutral	AA	100	somatic	0	0.282897011052205	0.102585176043344
4	148708857	148897716	2	neutral	AA	45.876	somatic	0	0.00518752569487853	0.0284031951623264
4	151119210	151138416	2	neutral	AA	100	somatic	0	0.528741763068662	0.962714170286789
4	157505205	157521210	2	neutral	AA	54.5678	somatic	0	0.646556360922179	0.87708637759103
4	158503917	158532726	2	neutral	AA	18.3222	somatic	0	0.805696422350681	0.465386450541011
4	162082635	162549981	2	neutral	AA	24.7651	somatic	0	0.215809044548621	0.162583963010388
4	165078771	165085173	1	loss	A	-1	germline	1	0.021314159096562	0.0566961475730345
4	165766986	165786192	2	neutral	AA	100	somatic	0	0.989958386363301	0.909570863367332
4	169899477	169973100	2	neutral	AA	27.284	somatic	0	0.623165971035344	0.37956942007487
4	172501890	172511493	1	loss	A	-1	germline	1	0.00651560807641104	0.00958834673050102
4	185520357	185523558	0	loss	-	-1	germline	1	0.0832755879972573	0.270055970023098
5	3322638	3325839	4	gain	-	-1	germline	1	0.0832961527298052	0.270091683845489
5	12810402	12813603	0	loss	-	-1	germline	1	0.0832660979694948	0.270039487883148
5	17711133	17717535	3	gain	-	-1	somatic	0	0.0143193588684009	0.0366528520274473
5	45006060	45015663	1	loss	A	-1	germline	1	0.00585610249776461	0.0095275573794763
5	45370974	45377376	1	loss	A	-1	germline	1	0.0201783801346973	0.0545697902874662
5	46270455	46276857	1	loss	A	-1	somatic	0	0.0281205936527152	0.0579751739929368
5	49599495	49602696	251	gain	-	-1	germline	1	0.0832653071733943	0.270038114404638
5	50937513	50943915	0	loss	-	-1	germline	1	0.0143096218128114	0.0366415751001186
5	52909329	52912530	1	loss	A	-1	somatic	0	0.0836090847573806	0.270634683283341
5	60191604	60201207	1	loss	A	-1	germline	1	0.018194587640239	0.0485526165069288
5	60703764	60710166	1	loss	A	-1	somatic	0	0.0255677308002461	0.0566851710007069
5	84650445	84660048	1	loss	A	-1	germline	1	0.0205081132089039	0.0558134843619422
5	86417397	86423799	1	loss	A	-1	somatic	0	0.0291341086778727	0.0561903887062076
5	86916753	86923155	1	loss	A	-1	germline	1	0.0207470973101456	0.0564217340785939
5	106385235	106391637	1	loss	A	-1	somatic	0	0.0276750061544784	0.0560733911081066
5	118539432	118545834	1	loss	A	-1	somatic	0	0.0206506629606124	0.0562645048173688
5	120043902	120050304	1	loss	A	-1	somatic	0	0.0194683264987908	0.0525376372483927
5	137518161	137521362	1	loss	A	-1	somatic	0	0.0832921976540932	0.27008481553499
5	139461168	139467570	2	neutral	AA	54.6368	somatic	0	0.62438104740942	0.915905332442889
5	139710846	139714047	2	neutral	AA	100	somatic	0	0.291677575786794	0.537011922806075
5	140520699	140568714	2	neutral	AA	100	somatic	0	0.875644941135173	0.904542517581051
5	145738329	145802349	2	neutral	AA	54.6231	somatic	0	0.987341274095147	0.775275489900909
5	146189670	146208876	2	neutral	AA	54.5678	somatic	0	0.962270757763786	0.624265139391055
5	148007838	148033446	2	neutral	AA	54.5787	somatic	0	0.180827634484112	0.442218028343915
5	149288238	149294640	2	neutral	AA	54.5678	somatic	0	0.256172356386706	0.352768989243645
5	152668494	153577578	2	neutral	AA	35.9261	somatic	0	3.10376276860609e-06	4.43816361417326e-05
5	156051951	156061554	1	loss	A	-1	germline	1	0.00513129291314665	0.00912834786145944
5	160904667	160907868	2	neutral	AA	100	somatic	0	0.210083582056039	0.44756827429122
5	161272782	161295189	2	neutral	AA	100	somatic	0	0.0493996407574899	0.0582441641777274
5	165466092	165526911	2	neutral	AA	54.8986	somatic	0	0.648459384509588	0.861315389462423
5	169489749	169553769	2	neutral	AA	38.8656	somatic	0	0.200160886297868	0.264722946930347
5	172297026	172309830	1	loss	A	-1	somatic	0	0.00784101223661411	0.0110538524446216
5	178193268	178241283	2	neutral	AA	59.3737	somatic	0	0.462099252201286	0.556157859626658
5	178583790	178586991	6	gain	AAAABB	5.4071	germline	1	0.0832850789011628	0.270072452897382
5	179454462	179467266	2	neutral	AA	21.8715	somatic	0	0.480953158723588	0.569554653774754
5	179748954	179755356	2	neutral	AA	54.5681	germline	1	0.76468829756491	0.973941886934964
5	180594018	180616425	2	neutral	AA	5.58386	somatic	0	0.941638839637077	0.36897435593129
5	180747666	180770073	3	gain	AAB	6.4657	germline	1	0.000108126457358872	9.16054189423754e-05
5	181045359	181048560	3	gain	AAB	24.9549	somatic	0	0.0832985258482538	0.27009580489298
6	256080	297693	3	gain	AAB	1.86758	germline	1	1.98750604766515e-09	7.61607443777734e-11
6	297693	380919	4	gain	AABB	0.720955	germline	1	2.1691647295773e-17	0
6	380919	384120	3	gain	AAB	15.4147	germline	1	0.0833040633376184	0.270105420848946
6	4750284	4820706	2	neutral	AA	36.3802	germline	1	0.962781994728165	0.83946556254708
6	8338605	8341806	1	loss	A	-1	somatic	0	0.0987692366541718	0.296003625619281
6	10147170	10175979	2	neutral	AA	100	somatic	0	0.413117958849176	0.446300935720992
6	13392984	13437798	2	neutral	AA	35.1539	germline	1	0.584648457136907	0.850987726942959
6	19039548	19049151	1	loss	A	-1	germline	1	0.00550812748135212	0.00927368890845015
6	20956947	20960148	4	gain	AABB	53.4558	germline	1	0.0832921976540932	0.270084815534996
6	32486949	32528562	1	loss	A	-1	germline	1	6.82758425972031e-08	5.63884550164317e-09
6	32554170	32666205	1	loss	A	-1	somatic	0	4.86938836900937e-08	8.11580891380004e-09
6	35659140	35662341	0	loss	-	-1	germline	1	0.0832668887716792	0.270040861366763
6	54064890	54071292	1	loss	A	-1	somatic	0	0.02396423404584	0.0543624625321015
6	56174349	56340801	2	neutral	AA	36.4973	somatic	0	0.158803799309508	0.123668389354596
6	60230016	60236418	3	gain	-	-1	germline	1	0.0143188593900788	0.036653227977315
6	60236418	60239619	4	gain	-	-1	germline	1	0.0832921976540932	0.270084815534996
6	65345214	65361219	2	neutral	AA	100	somatic	0	0.0731128185070193	0.214894950065809
6	73882281	73891884	1	loss	A	-1	germline	1	0.00500562977916695	0.00809139058963482
6	80575572	80585175	1	loss	A	-1	germline	1	0.00544180645077955	0.00955999027897458
6	99845592	99890406	2	neutral	AA	27.3654	somatic	0	0.76868290320913	0.529485614622761
6	101836614	102287955	2	neutral	AA	49.7428	somatic	0	0.44622763418836	0.702040488294748
6	104816745	104826348	2	neutral	AA	54.5679	somatic	0	0.544715464453544	0.617365644283199
6	118645065	118648266	5	gain	AAAAA	15.0123	germline	1	0.0832914066572059	0.270083441888196
6	119262858	119445315	2	neutral	AA	100	somatic	0	0.0980607498399412	0.118579105199012
6	125860119	125866521	1	loss	A	-1	somatic	0	0.0260410106406822	0.0578868317846305
6	127345383	127351785	2	neutral	AA	100	somatic	0	0.401913507828158	0.586257892827402
6	131781969	131797974	1	loss	A	47.4687	germline	1	0.000615451932487014	0.000323022451007238
6	135581556	135587958	2	neutral	AA	100	somatic	0	0.761284331997231	0.967019275410857
6	146628207	146647413	2	neutral	AA	100	somatic	0	0.45944152881993	0.689123662147496
6	153420729	153436734	2	neutral	AA	0.306239	germline	1	0.182807920710893	0.0564224555155859
6	157313145	157316346	4	gain	AAAB	7.61872	germline	1	0.0832937796661228	0.270087562843895
6	165309243	165318846	1	loss	A	-1	germline	1	0.00673562408334484	0.0101789184548372
6	170145954	170149155	3	gain	AAB	11.4548	somatic	0	0.0833001079576457	0.270098552283472
7	1776555	1782957	2	neutral	AA	100	germline	1	0.937481069379529	0.897278400932998
7	3095367	3098568	2	neutral	AA	100	somatic	0	0.213552273198648	0.451678214918642
7	3242613	3245814	2	neutral	AA	100	somatic	0	0.366947895984934	0.609652078962559
7	4657455	4718274	2	neutral	AA	65.2443	somatic	0	0.643329025557822	0.774182906172584
7	6040287	6049890	2	neutral	AA	100	somatic	0	0.762940402845026	0.978011559994759
7	8140143	8152947	2	neutral	AA	18.5697	germline	1	0.267424986206689	0.463197883817247
7	9759849	9766251	1	loss	A	-1	germline	1	0.0206916729985263	0.0563889468704447
7	11728464	11738067	2	neutral	AA	100	germline	1	0.121042202228002	0.157095086549887
7	12845613	12877623	2	neutral	AA	65.397	somatic	0	0.268347279395408	0.603360642682358
7	13847526	13873134	2	neutral	AA	56.5682	somatic	0	0.464635067712952	0.475245241202137
7	23572164	23600973	2	neutral	AA	54.5678	somatic	0	0.960809737412882	0.887538799842211
7	25374327	25383930	2	neutral	AA	22.2158	somatic	0	0.54007635608028	0.818166218657748
7	25569588	25617603	2	neutral	AA	54.5678	somatic	0	0.510884764624455	0.348016170273977
7	27192495	27275721	2	neutral	AA	36.7139	somatic	0	0.725021014972148	0.839413695846371
7	30566349	30620766	2	neutral	AA	22.7402	somatic	0	0.452991629657751	0.517164080455134
7	32432532	32483748	2	neutral	AA	44.4422	somatic	0	0.179684867931919	0.26666577959094
7	32666205	32669406	2	neutral	AA	100	somatic	0	0.293525109582597	0.538929613688767
7	37214826	37266042	2	neutral	AA	100	somatic	0	0.734180255506396	0.125221034030177
7	37342866	37374876	2	neutral	AA	100	somatic	0	0.0967101280977321	0.192675108548563
7	41049624	41251287	2	neutral	AA	49.8415	germline	1	0.0972445094680926	0.29798966597034
7	41516970	41520171	2	neutral	AA	100	somatic	0	0.66862476822281	0.831650172506067
7	50774262	50777463	2	neutral	AA	100	somatic	0	0.871919831454141	0.926252983993737
7	52662852	52675656	3	gain	AAB	3.14147	germline	1	0.000533762968441142	0.000673006733731163
7	56692911	56702514	1	loss	A	-1	germline	1	0.00701858422142154	0.00953572548806136
7	57483558	57486759	2	neutral	AA	27.3132	germline	1	0.567523545348694	0.768377532028434
7	57486759	57496362	3	gain	AAB	6.8162	germline	1	0.00270274114548916	0.00496112882432675
7	57496362	57931698	2	neutral	AA	0.986933	germline	1	0.000556308365627598	0.000792141683732317
7	57931698	57938100	4	gain	AAAA	3.40357	germline	1	0.0143147392802921	0.0366445819838849
7	57938100	58024527	2	neutral	AA	1.58144	germline	1	1.18723220364893e-08	3.16027830127297e-07
7	58046934	58062939	2	neutral	AA	36.5083	germline	1	0.00152965133117451	0.00586217956209001
7	58062939	58066140	4	gain	AAAA	9.12472	germline	1	0.0832921976540932	0.270084815534996
7	58066140	61023864	2	neutral	AA	-1	somatic	0	9.81101028288081e-08	6.24023831830023e-07
7	61023864	61027065	4	gain	-	-1	somatic	0	0.0832961527298052	0.270091683845489
7	61046271	61055874	4	gain	-	-1	germline	1	0.00270269563890953	0.00496135782459384
7	61055874	62297862	2	neutral	AA	2.63065	germline	1	5.45544202143104e-11	4.09219347297096e-09
7	62297862	62345877	3	gain	AAB	0.502063	germline	1	1.61063444799223e-06	2.7915401963341e-06
7	62345877	62358681	2	neutral	AA	1.03387	germline	1	0.0107208749936223	0.024568443710738
7	62403495	62406696	4	gain	-	-1	germline	1	0.0832921976540932	0.270084815534996
7	62438706	62454711	3	gain	AAB	3.05675	germline	1	0.000209120066119307	0.000678582120660076
7	65796555	65822163	3	gain	AAB	0.146015	germline	1	9.69825508608998e-07	2.28128616774903e-07
7	65825364	65985414	2	neutral	AA	27.117	somatic	0	0.00589378733917918	0.000780247098043696
7	66007821	66097449	2	neutral	AA	27.3692	somatic	0	0.635094138783581	0.417746926667789
7	66567996	66628815	2	neutral	AA	28.2447	somatic	0	0.11028508954867	0.289509196032775
7	68341350	68347752	2	neutral	AA	100	somatic	0	0.328177809384103	0.51220143153731
7	69592941	69634554	2	neutral	AA	12.43	somatic	0	0.634736702588862	0.63539066528268
7	81548676	81551877	2	neutral	AA	100	somatic	0	0.316043551473975	0.561467088481632
7	82243293	82374534	2	neutral	AA	54.568	somatic	0	0.0245324918175098	0.0692623380128884
7	98241891	98555589	2	neutral	AA	15.2975	somatic	0	0.144249677110664	0.10327443957634
7	100949937	100956339	4	gain	AABB	5.16044	germline	1	0.0143158628428723	0.0366460855067242
7	100956339	100959540	14	gain	AAAAAAAAAAAAAB	29.2467	germline	1	0.0832653071733943	0.270038114404638
7	100959540	100972344	4	gain	AABB	0.217099	germline	1	0.000532798880767521	0.000671765390077961
7	101321253	101490906	3	gain	AAB	12.1862	somatic	0	1.13652273787054e-33	0
7	103360290	103398702	2	neutral	AA	54.5678	somatic	0	0.254116673148716	0.24181005194108
7	103430712	103478727	2	neutral	AA	54.5678	somatic	0	0.207477007680788	0.252923077441222
7	103555551	103728405	2	neutral	AA	18.2548	somatic	0	0.601923197270887	0.902341217560741
7	104768730	104816745	2	neutral	AA	54.6056	somatic	0	0.15882378386118	0.592441013429708
7	106100346	106103547	3	gain	AAB	100	germline	1	0.0832969437632029	0.270093057522886
7	108161790	108171393	2	neutral	AA	18.9459	germline	1	0.943742450798889	0.97525249440505
7	109800702	109813506	1	loss	A	-1	germline	1	0.000633544003570659	0.000809840940305895
7	110540133	110549736	1	loss	A	-1	germline	1	0.0182858783746172	0.0481855343014201
7	114887091	114890292	2	neutral	AA	100	somatic	0	0.426850215604686	0.661944256569055
7	116260320	116289129	2	neutral	AA	100	somatic	0	0.477748104710928	0.482792487800625
7	119829435	119909460	2	neutral	AA	62.2368	somatic	0	0.0113930473288326	0.0336478676603708
7	120293580	120309585	2	neutral	AA	100	somatic	0	0.646333799730189	0.787849703120513
7	128888265	128910672	2	neutral	AA	54.568	somatic	0	0.749884626764049	0.74578613826309
7	130018218	130085439	2	neutral	AA	62.8921	somatic	0	0.3036025800001	0.716735326228356
7	131737155	131746758	2	neutral	AA	100	somatic	0	0.9223402190446	0.997915990736477
7	132595023	132611028	2	neutral	AA	12.116	somatic	0	0.178247562621636	0.40489517229571
7	139019430	139054641	2	neutral	AA	54.5678	somatic	0	0.249207816418086	0.353108265489372
7	140479086	140498292	2	neutral	AA	20.9788	somatic	0	0.904962917003027	0.540821292529222
7	141045663	141048864	2	neutral	AA	100	somatic	0	0.492282195545642	0.714197543250263
7	143327976	143331177	2	neutral	AA	48.1079	somatic	0	0.440419776332775	0.673194132694897
7	143846538	143849739	5	gain	-	-1	germline	1	0.0832921976540932	0.270084815534996
7	150907944	150911145	3	gain	AAA	10.9993	somatic	0	0.0832985258482538	0.27009580489298
7	152357997	152399610	2	neutral	AA	16.5063	somatic	0	0.621049506537516	0.549745075537534
7	152399610	152402811	5	gain	AAABB	53.3764	germline	1	0.0832921976540932	0.270084815534996
7	152402811	152409213	10	gain	AAAAAAAABB	4.95671	germline	1	0.0143077499718673	0.0366363135729749
7	152415615	152418816	2	neutral	AA	15.7815	germline	1	0.782604907779876	0.890056406234863
7	157137090	157223517	2	neutral	AA	56.871	somatic	0	0.789510525246548	0.842452779492322
7	157460391	157489200	2	neutral	AA	38.2888	somatic	0	0.303627970335324	0.249795759079805
7	157550019	157559622	2	neutral	AA	54.5678	somatic	0	0.0882475793899445	0.175367658281548
7	158148606	158151807	6	gain	AAAABB	13.0386	germline	1	0.0832858698493714	0.270073826503385
7	158593545	158596746	5	gain	AAABB	45.5384	germline	1	0.0832914066572059	0.270083441888196
8	643401	649803	0	loss	-	-1	germline	1	0.0143084986823241	0.0366381926139214
8	5736192	5748996	1	loss	A	-1	germline	1	0.0144233336671351	0.0369789331754291
8	6110709	6117111	1	loss	A	-1	germline	1	0.0206769322360771	0.0563015943816365
8	16706019	16712421	1	loss	A	-1	somatic	0	0.0280331838202169	0.0755606207084418
8	25115046	25131051	1	loss	A	-1	germline	1	0.000152913071545551	0.000207417923887787
8	25207875	25214277	1	loss	A	-1	somatic	0	0.0266272761216233	0.0561288708033522
8	38072694	38079096	1	loss	A	-1	somatic	0	0.0213231863571692	0.0567840259345229
8	39375501	39529149	1	loss	A	-1	germline	1	5.10539549143464e-28	0
8	43235907	43239108	4	gain	-	-1	germline	1	0.0832937796661228	0.270087562843895
8	43239108	43242309	7	gain	-	-1	germline	1	0.0832803333396888	0.270064211368452
8	43776876	43783278	3	gain	-	-1	somatic	0	0.0144816228976734	0.0371433035278806
8	46612962	46628967	3	gain	AAB	11.4387	germline	1	0.00010786587657526	9.12164100337343e-05
8	50118057	50124459	1	loss	A	-1	germline	1	0.0221181236454208	0.0525047481215927
8	62121807	62128209	1	loss	A	-1	somatic	0	0.0221260753150582	0.0524451818381794
8	62726796	62742801	2	neutral	AA	27.2846	somatic	0	0.299704757695524	0.542393028176566
8	74448858	74452059	1	loss	A	-1	germline	1	0.123255384232392	0.333771028958005
8	74452059	74455260	0	loss	-	-1	germline	1	0.0832660979694948	0.270039487883148
8	81683118	81689520	1	loss	A	-1	somatic	0	0.0234073651748036	0.0596872710464609
8	81689520	81955203	2	neutral	AA	23.4414	somatic	0	0.0254091090117741	0.0108175699128954
8	88674102	88702911	1	loss	A	-1	germline	1	7.47617810725002e-05	4.12370294053943e-05
8	91170882	91234902	2	neutral	AA	36.3787	germline	1	0.195728579613358	0.111300272434589
8	93059472	93065874	0	loss	-	-1	germline	1	0.0143078747545434	0.0366359377749017
8	102646467	102656070	2	neutral	AA	100	somatic	0	0.448357393756615	0.528667147971522
8	105876276	105882678	1	loss	A	-1	somatic	0	0.028344224147285	0.0750682490780242
8	108459483	108481890	2	neutral	AA	54.5791	germline	1	0.384160561268809	0.42527179016381
8	108773181	108798789	2	neutral	AA	100	somatic	0	0.315251280546781	0.62065629615736
8	111900558	111916563	2	neutral	AA	100	germline	1	0.8125504957971	0.686842078798657
8	118901145	119195637	2	neutral	AA	22.5702	somatic	0	0.00177587031443807	0.016995463249737
8	121638000	121826859	2	neutral	AA	65.4794	somatic	0	0.919630058116233	0.748160308595388
8	122380632	122393436	2	neutral	AA	100	somatic	0	0.636039001375691	0.612539365935166
8	137335704	137345307	2	neutral	AA	100	somatic	0	0.979156071438815	0.657538439304318
8	141711471	141759486	2	neutral	AA	6.42907	germline	1	0.00381722913165907	0.00306184438172585
8	143209539	143215941	2	neutral	AA	54.5679	somatic	0	0.366792088703323	0.811105745205673
8	144125025	144128226	5	gain	AAAAA	28.4164	germline	1	0.0832921976540932	0.270084815534996
9	9862281	9875085	2	neutral	AA	100	somatic	0	0.538999827380156	0.747328024198464
9	10723350	11485188	2	neutral	AA	28.9087	germline	1	0.165778846922075	0.0274507785406251
9	15015891	15044700	2	neutral	AA	56.3591	somatic	0	0.568933680087532	0.765062973086769
9	15915372	15934578	2	neutral	AA	100	somatic	0	0.323007268847386	0.590686970250223
9	26667531	26680335	2	neutral	AA	100	somatic	0	0.468488451932892	0.757571358963002
9	28047162	28050363	1	loss	A	-1	germline	1	0.0887404449122756	0.279421217554444
9	29090688	29097090	1	loss	A	-1	germline	1	0.0226523074157247	0.055355897675378
9	31120122	31132926	2	neutral	AA	100	somatic	0	0.950454105529965	0.967483804590813
9	32963898	33053526	2	neutral	AA	20.3525	somatic	0	0.778929344312628	0.701093886834525
9	33789756	33802560	2	neutral	AA	1.16686	germline	1	0.088083235678065	0.0439429168137462
9	38383191	38460015	2	neutral	AA	46.0991	somatic	0	0.764257182600168	0.775632489651958
9	104102922	104109324	2	neutral	AA	54.5678	somatic	0	0.59471818178584	0.457244501573066
9	104996001	105012006	2	neutral	AA	54.5678	somatic	0	0.215375258806818	0.363350837750936
9	105360915	105402528	2	neutral	AA	54.5678	somatic	0	0.414827926686212	0.27880485425622
9	110261646	110268048	1	loss	A	-1	germline	1	0.0285614028025222	0.0563354296552679
9	110844228	110863434	2	neutral	AA	100	somatic	0	0.309208369742971	0.422257213285144
9	116439576	116634837	2	neutral	AA	38.1063	somatic	0	0.349910342613382	0.201512121584012
9	118718688	118798713	2	neutral	AA	27.2839	somatic	0	0.207238868646122	0.406096211185299
9	118974768	118987572	2	neutral	AA	100	somatic	0	0.224595158420016	0.376214165651458
9	121676412	121686015	2	neutral	AA	100	somatic	0	0.157098897366007	0.338471107068077
9	127876749	127883151	2	neutral	AA	36.3786	somatic	0	0.467843223138352	0.891068333074599
9	128648190	128651391	1	loss	A	-1	germline	1	0.0896986861946908	0.281038111301662
9	128651391	128664195	2	neutral	AA	100	somatic	0	0.011327316004003	0.0121564777790496
9	129429234	129438837	3	gain	AAB	0.316698	germline	1	0.00270342382820496	0.00496227392255943
9	130456755	130495167	2	neutral	AA	100	somatic	0	0.739494727152077	0.633366614121987
9	136769127	136781931	1	loss	A	-1	germline	1	0.00141387236497254	0.00158561831781745
9	136801137	136804338	4	gain	AAAA	28.4174	germline	1	0.0832953617024927	0.270090310173191
9	137326101	137329302	4	gain	AAAA	5.89243	germline	1	0.0832953617024927	0.270090310173191
9	137354910	137358111	3	gain	AAB	18.3488	germline	1	0.0833040633376184	0.270105420848946
10	26568300	26654727	2	neutral	AA	0.437615	somatic	0	0.0737126481901786	0.0772620375132294
10	26811576	26952420	2	neutral	AA	1.39262	somatic	0	0.860316262496223	0.667189084541765
10	30956871	30963273	1	loss	A	-1	somatic	0	0.0276822196369115	0.0565475702413861
10	35735964	35806386	2	neutral	AA	54.5728	somatic	0	0.907862894412616	0.937153425690837
10	38149518	38229543	2	neutral	AA	100	somatic	0	0.0230591187566827	0.0502280433616135
10	38485623	38488824	3	gain	AAA	2.40134	germline	1	0.0833072277511346	0.270110915793118
10	38488824	38492025	5	gain	AAAAB	15.0386	germline	1	0.0832921976540932	0.270084815534996
10	38492025	38524035	3	gain	AAA	100	germline	1	5.2172076722591e-08	8.78392669712014e-09
10	38524035	38527236	5	gain	AAAAA	2.52049	germline	1	0.0832914066572059	0.270083441888196
10	38575251	38578452	2	neutral	AA	10.0485	somatic	0	0.085313792872967	0.273580639552052
10	38578452	38581653	5	gain	AAAAA	1.50618	germline	1	0.0832914066572059	0.270083441888196
10	38581653	38834532	3	gain	AAA	15.8474	somatic	0	2.33627666054782e-13	6.92779167366098e-14
10	39557958	39561159	0	loss	-	-1	germline	1	0.0832660979694948	0.270039487883148
10	41856276	41865879	17	gain	AAAAAAAAAAABBBBBB	2.35219	germline	1	0.00269987559793384	0.00495761869996014
10	41881884	41885085	82	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	7.23241	germline	1	0.0832653071733943	0.270038114404638
10	41888286	41913894	35	gain	-	-1	germline	1	0.00269987559793384	0.00495761869996014
10	42301215	42320421	3	gain	AAB	2.25687	germline	1	2.23259478519615e-05	1.26022952720017e-05
10	42320421	42323622	2	neutral	AA	66.8878	somatic	0	0.0871998866986158	0.276807064850364
10	46513731	46561746	6	gain	AAABBB	0.444336	germline	1	9.1570505345311e-11	1.38689060236175e-12
10	48674406	48677607	1	loss	A	-1	somatic	0	0.0850616598510123	0.273144120636641
10	53030967	59666640	2	neutral	AA	1.80337	somatic	0	0.00122761172961614	1.62722516739988e-05
10	65546877	65556480	1	loss	A	-1	somatic	0	0.0055382201605811	0.00858377304393754
10	67723557	67729959	1	loss	A	-1	germline	1	0.0293778567246183	0.0578700710106931
10	69519318	69532122	1	loss	A	-1	germline	1	0.00166713575538323	0.0016790190536774
10	76494297	76500699	1	loss	A	-1	somatic	0	0.022520621706055	0.0567631442311931
10	83373246	83619723	2	neutral	AA	39.9682	somatic	0	0.591575721285746	0.441807256055918
10	86193327	86199729	1	loss	A	-1	germline	1	0.0162640244137891	0.0400930387615501
10	89996115	89999316	1	loss	A	-1	somatic	0	0.0841428548294566	0.271558919507503
10	92380860	92512101	2	neutral	AA	100	somatic	0	0.0718267779644105	0.198011356553789
10	97812957	97822560	2	neutral	AA	100	somatic	0	0.459666655741612	0.525883942089805
10	103248255	103251456	3	gain	AAB	18.2364	somatic	0	0.0833103922620199	0.270116410818884
10	120466434	120469635	0	loss	-	-1	germline	1	0.0832747971281474	0.270054596483388
10	123254505	123257706	3	gain	AAB	6.68498	germline	1	0.0833016900913786	0.270101299694363
10	128462532	128465733	6	gain	AAABBB	46.209	germline	1	0.0832906156664035	0.270082068246496
10	131621919	131625120	1	loss	A	-1	somatic	0	0.0832969437632029	0.27009305752288
10	132361350	132364551	3	gain	AAB	14.0419	germline	1	0.0832993168999071	0.270097178585676
10	133110384	133113585	4	gain	AABB	16.7217	germline	1	0.0832921976540932	0.270084815534996
11	4948746	4955148	1	loss	A	-1	germline	1	0.0174954878400823	0.0428996525248511
11	5761800	5787408	1	loss	A	-1	germline	1	3.39424628982467e-06	1.27410644978898e-06
11	28985055	28991457	1	loss	A	-1	germline	1	0.022614268777033	0.0551127811096352
11	48712818	48716019	1	loss	A	-1	germline	1	0.0832850789011628	0.270072452897375
11	50175675	50178876	1	loss	A	-1	germline	1	0.0850689012588034	0.27315658557129
11	54929160	54935562	8	gain	-	-1	germline	1	0.0143088730505128	0.0366370651792359
11	54935562	54938763	6	gain	AAABBB	100	germline	1	0.0832914066572059	0.270083441888196
11	54938763	55249260	2	neutral	AA	3.67135	somatic	0	1.33811021341403e-19	1.11022302462516e-16
11	61388778	61391979	3	gain	-	-1	germline	1	0.0833151392109195	0.270124653510525
11	63632679	63731910	2	neutral	AA	36.3786	somatic	0	0.417711479885306	0.660041525269894
11	69055173	69112791	2	neutral	AA	57.1872	somatic	0	0.00128796817072498	0.00306286907542841
11	70370784	70373985	3	gain	AAB	23.8302	germline	1	0.0833040633376184	0.270105420848946
11	86001267	86014071	2	neutral	AA	36.3786	somatic	0	0.472847486663207	0.297762797764993
11	87592164	87608169	2	neutral	AA	36.3786	somatic	0	0.410276904503615	0.766916301345826
11	90719541	90729144	2	neutral	AA	54.5683	somatic	0	0.75018257436556	0.717109778922212
11	95716302	95908362	2	neutral	AA	100	somatic	0	0.144601473683681	0.494257385979192
11	96561366	96567768	1	loss	A	-1	germline	1	0.0205215503850711	0.055860613655371
11	104394213	104403816	1	loss	A	-1	germline	1	0.0227064776521062	0.0607112112868112
11	104848755	104874363	2	neutral	AA	56.5675	germline	1	0.193414566508604	0.199753631097477
11	113897982	113939595	2	neutral	AA	18.3768	somatic	0	0.520782688885213	0.583493371961907
11	119029185	119035587	1	loss	A	-1	germline	1	0.0288640166822258	0.0563097787323907
11	122988822	123152073	2	neutral	AA	9.79499	somatic	0	0.073125810910393	0.083456249367398
11	123683439	123798675	2	neutral	AA	32.8932	somatic	0	0.0849822662973477	0.203357872918352
12	758637	765039	1	loss	A	-1	germline	1	0.0149300514049643	0.0378017833212149
12	2253504	2256705	5	gain	-	-1	germline	1	0.0832914066572059	0.270083441888196
12	33149556	33155958	1	loss	A	-1	germline	1	0.0225467196420986	0.0568296589293966
12	37576539	37621353	2	neutral	AA	53.887	somatic	0	0.0653368453667898	0.160357729286858
12	37621353	37810212	2	neutral	AA	0.76227	somatic	0	6.79448407051188e-14	1.3104739515768e-11
12	39711606	39714807	0	loss	-	-1	germline	1	0.0832755879972573	0.270055970023098
12	50054037	50146866	2	neutral	AA	54.5685	somatic	0	0.922280484201373	0.480149528878626
12	63293373	63395805	2	neutral	AA	48.2054	somatic	0	0.341903873202138	0.542115023771668
12	90092145	90098547	1	loss	A	-1	germline	1	0.020348569369218	0.0544991907638844
12	96823848	96827049	1	loss	A	-1	germline	1	0.0952153018542829	0.290209154174604
12	121718025	121727628	2	neutral	AA	100	somatic	0	0.331704333255005	0.417548794726441
12	127233348	127258956	2	neutral	AA	27.282	somatic	0	0.17151972567835	0.261342079106293
12	132726264	133004751	2	neutral	AA	100	somatic	0	0.0145176811488063	0.0115888914618846
13	21376278	21379479	3	gain	AAB	23.3067	germline	1	0.0832961527298052	0.270091683845489
13	22019679	22022880	0	loss	-	-1	germline	1	0.0832660979694948	0.270039487883148
13	26475471	26478672	1	loss	A	-1	germline	1	0.0832779606410932	0.270060090672824
13	29068281	29106693	2	neutral	AA	100	somatic	0	0.14657385202062	0.148671345910656
13	38482422	38485623	1	loss	A	-1	somatic	0	0.0974221664716275	0.293815869389564
13	39359496	39362697	1	loss	A	-1	germline	1	0.103461559430702	0.303517646979987
13	40665504	41171262	2	neutral	AA	100	somatic	0	0.0740003070725907	0.0392970878050999
13	43706454	43936926	2	neutral	AA	37.793	somatic	0	0.191804050095896	0.29306451220517
13	45422190	45431793	2	neutral	AA	25.5891	somatic	0	0.0101908705362174	0.0254201803799767
13	46587354	46660977	2	neutral	AA	21.9282	somatic	0	0.450869587879686	0.469192356196467
13	50495775	50502177	1	loss	A	-1	germline	1	0.0212320051285379	0.0564714926208272
13	63027690	63059700	3	gain	AAB	0.374712	germline	1	9.4707482596237e-08	2.32487475604337e-07
13	63059700	63069303	4	gain	AAAB	0.894998	germline	1	0.00270242261413401	0.00496059452804931
13	67525095	67528296	3	gain	AAB	100	germline	1	0.0833088099944059	0.270113663295802
13	106737345	106842978	2	neutral	AA	54.3233	somatic	0	0.891247323311724	0.926727156642905
13	111446016	111570855	2	neutral	AA	5.77039	germline	1	0.276105383533888	0.493170164379463
13	112870461	112873662	3	gain	AAA	100	somatic	0	0.0833040633376184	0.270105420848946
13	114154062	114157263	1	loss	A	-1	germline	1	0.109999253036249	0.313755123294853
14	0	16091427	4	gain	AABB	-1	somatic	0	NA	NA
14	16091427	16094628	6	gain	-	-1	germline	1	0.0832850789011628	0.270072452897382
14	16094628	18488976	4	gain	AABB	-1	somatic	0	NA	NA
14	18492177	18658629	4	gain	AABB	-1	somatic	0	NA	NA
14	18658629	18661830	4	gain	AABB	10.9885	germline	1	0.0832961527298052	0.270091683845489
14	18661830	18681036	4	gain	AABB	-1	somatic	0	NA	NA
14	18693840	19727763	4	gain	AABB	-1	somatic	0	NA	NA
14	19727763	19955034	4	gain	AABB	0.421199	germline	1	5.28639155367989e-22	0
14	19955034	19958235	3	gain	AAB	76.2705	germline	1	0.0833523312244687	0.270189227613442
14	23853852	24141942	2	neutral	AA	33.0004	somatic	0	0.944311267483056	0.541433985442197
14	26184180	26293014	2	neutral	AA	100	somatic	0	0.0862597430020185	0.0430451832991442
14	34346730	34353132	1	loss	A	49.8133	somatic	0	0.0422676387109306	0.0913005429998502
14	37586142	37720584	2	neutral	AA	36.6387	somatic	0	0.815837959454743	0.410400394631255
14	38914557	38943366	2	neutral	AA	54.5678	somatic	0	0.0210764408625856	0.0849660592269149
14	39081009	39103416	2	neutral	AA	41.211	somatic	0	0.781067234639353	0.830014094141544
14	41142453	41200071	1	loss	A	-1	germline	1	5.11055650467582e-11	4.88165063927681e-13
14	54103302	54122508	2	neutral	AA	100	germline	1	0.200066460796244	0.372029992605654
14	57867678	57886884	2	neutral	AA	100	somatic	0	0.736762623997419	0.721454212294379
14	61414386	61600044	2	neutral	AA	100	somatic	0	0.00686490779568127	0.00238554638702959
14	64365708	64410522	2	neutral	AA	27.2853	somatic	0	0.068340555094995	0.0997093721514966
14	68309340	68328546	2	neutral	AA	100	somatic	0	0.982451819366335	0.899709798040352
14	76177398	76209408	2	neutral	AA	54.7241	somatic	0	0.637013602553393	0.350120982928443
14	81468651	81478254	2	neutral	AA	100	somatic	0	0.753205112961541	0.858620251996679
14	92224011	92243217	2	neutral	AA	100	germline	1	0.0316344463382516	0.127658827190919
14	99925617	99928818	5	gain	AAABB	10.1227	germline	1	0.0832914066572059	0.270083441888196
15	0	17080536	5	gain	AAAAB	-1	somatic	0	NA	NA
15	17080536	17083737	17	gain	-	-1	germline	1	0.0832653071733943	0.270038114404638
15	17083737	20271933	5	gain	AAAAB	-1	somatic	0	0.713795042867508	0.494951968233962
15	20271933	20275134	5	gain	AAABB	77.6814	germline	1	0.0832914066572059	0.270083441888196
15	20275134	20339154	5	gain	AAAAB	-1	somatic	0	NA	NA
15	20339154	20342355	14	gain	AAAAAAAAABBBBB	22.6608	germline	1	0.0832653071733943	0.270038114404638
15	20342355	20345556	6	gain	AAAABB	15.2905	germline	1	0.0832874517640428	0.270076573730691
15	20345556	20668857	5	gain	AAAAB	4.5396	somatic	0	9.24536239032305e-09	5.59138291222894e-10
15	20668857	20672058	4	gain	AAAB	17.3411	germline	1	0.0832929886570655	0.270086189186896
15	22224543	22272558	3	gain	AAB	2.84058	germline	1	0.000107784127315511	9.09594981032269e-05
15	25479960	25492764	2	neutral	AA	42.3632	somatic	0	0.768958774439484	0.874641464806926
15	40847961	40870368	2	neutral	AA	54.5678	somatic	0	0.625720628163234	0.838717556977309
15	41164860	41187267	2	neutral	AA	12.1262	germline	1	0.432613516936114	0.65678808699418
15	41584191	41587392	2	neutral	AA	100	somatic	0	0.573222522646021	0.772226196035989
15	45258939	45361371	2	neutral	AA	54.8426	somatic	0	0.114313328697546	0.0296927799845997
15	53216625	53331861	2	neutral	AA	35.6484	germline	1	0.305424833467688	0.168415719131327
15	55908666	55915068	2	neutral	AA	54.5681	somatic	0	0.145934896775606	0.405859148308008
15	58562295	58635918	2	neutral	AA	27.3058	somatic	0	0.483727226458118	0.734950838751106
15	59231304	59244108	2	neutral	AA	36.3786	somatic	0	0.0464982628341739	0.0256053260763965
15	60198006	60223614	2	neutral	AA	54.5679	somatic	0	0.543502583293123	0.932948446758214
15	60799794	60835005	2	neutral	AA	51.4482	somatic	0	0.126201117096355	0.381475480870555
15	61686471	61708878	2	neutral	AA	57.1687	somatic	0	0.579190403609802	0.900611782678703
15	64698612	64721019	2	neutral	AA	27.2847	somatic	0	0.102250375575122	0.11264634086869
15	65521269	65569284	2	neutral	AA	54.5679	somatic	0	0.253338200640257	0.567955601298886
15	67051347	67096161	2	neutral	AA	54.6572	somatic	0	0.139654392894582	0.157821896551826
15	67848396	67896411	2	neutral	AA	100	somatic	0	0.579276869914371	0.702066394311945
15	72092922	72096123	0	loss	-	-1	germline	1	0.0832747971281474	0.270054596483388
15	72323394	72361806	2	neutral	AA	21.8351	somatic	0	0.0114099381941011	0.00484682649043999
15	74538486	74557692	2	neutral	AA	100	somatic	0	0.241741219514727	0.263098987278779
15	76590327	76603131	1	loss	A	-1	germline	1	0.00113410137884357	0.00160328791361708
15	79339986	79349589	2	neutral	AA	100	somatic	0	0.635459689776083	0.849380108964286
15	79503237	79516041	2	neutral	AA	27.3803	somatic	0	0.0879201188801287	0.358932156264657
15	90853983	90905199	2	neutral	AA	83.6057	somatic	0	0.337829760216813	0.489665123960798
15	91727856	91766268	2	neutral	AA	8.61323	somatic	0	0.45484393820374	0.516346481911034
15	95050494	95056896	2	neutral	AA	100	somatic	0	0.934983049990957	0.938405666598664
15	97982610	97989012	2	neutral	AA	100	somatic	0	0.687530813337029	0.816459174851573
15	98533182	98539584	2	neutral	AA	100	somatic	0	0.823292536768464	0.925313752729585
15	101503710	101529318	2	neutral	AA	43.076	somatic	0	0.771325688131682	0.968044056699477
16	921888	957099	2	neutral	AA	17.4678	somatic	0	0.0319277813997886	0.110534192638548
16	1024320	1027521	5	gain	AAABB	100	germline	1	0.0832921976540932	0.270084815534996
16	1027521	1046727	2	neutral	AA	21.8312	somatic	0	0.79165912993755	0.957312638190902
16	1959012	1978218	2	neutral	AA	20.8528	somatic	0	0.941354106037257	0.914932576805165
16	2400750	2471172	2	neutral	AA	34.389	somatic	0	0.128913169703366	0.0516999131092075
16	4750284	4753485	2	neutral	AA	100	somatic	0	0.392883370775184	0.63283336857544
16	5652966	5665770	2	neutral	AA	15.1421	somatic	0	0.234068796381181	0.436331596613794
16	10732953	10764963	2	neutral	AA	54.5685	somatic	0	0.478828495673571	0.770780609386179
16	11600424	11978142	2	neutral	AA	19.2438	somatic	0	0.00125483906693796	0.00189662553748859
16	12362262	12371865	2	neutral	AA	100	somatic	0	0.591106166013525	0.433180286402199
16	12653553	12656754	2	neutral	AA	100	somatic	0	0.882593971139565	0.930025932913543
16	19932627	19955034	1	loss	A	-1	germline	1	1.37603991888023e-05	7.85276257653234e-06
16	21558735	21584343	4	gain	AABB	9.22037	germline	1	9.65943254939054e-07	2.25541812337582e-07
16	22615065	22618266	4	gain	AABB	32.3772	germline	1	0.0832953617024927	0.270090310173191
16	22618266	22691889	4	gain	AAAB	1.58976	germline	1	4.54208465414238e-16	0
16	22691889	22698291	4	gain	AABB	8.87027	germline	1	0.0143156131555764	0.0366464613958674
16	23376903	23456928	2	neutral	AA	19.2815	somatic	0	0.222245011203759	0.321578641189206
16	23610576	23613777	2	neutral	AA	100	somatic	0	0.902604253055077	0.936789158002621
16	23924274	23930676	1	loss	A	-1	germline	1	0.0215658598760349	0.0556723016242799
16	25265493	25329513	2	neutral	AA	70.116	germline	1	0.156677974731	0.332007586446449
16	25329513	25332714	1	loss	A	-1	germline	1	0.0832842879590389	0.270071079296471
16	25332714	25374327	2	neutral	AA	36.3786	germline	1	0.0937622208806188	0.120517374647921
16	28850613	28853814	1	loss	A	-1	somatic	0	0.0923076563817504	0.285405629159193
16	30633570	30636771	2	neutral	AA	100	somatic	0	0.270744439048643	0.515263730671904
16	30883248	30889650	2	neutral	AA	54.5678	somatic	0	0.273506021207754	0.425419035175311
16	31184142	31200147	2	neutral	AA	54.5873	somatic	0	0.740322513267397	0.490827433682881
16	31417815	31427418	2	neutral	AA	54.5679	somatic	0	0.153344033455832	0.23515579861266
16	34061841	34065042	27	gain	AAAAAAAAAAAAAAAAAABBBBBBBBB	30.1565	germline	1	0.0832653071733943	0.270038114404638
16	34068243	34084248	2	neutral	AA	13.6437	germline	1	0.00559895442778065	0.0119901933373718
16	34084248	34087449	14	gain	AAAAAAAAABBBBB	41.0555	germline	1	0.0832653071733943	0.270038114404638
16	34093851	34097052	4	gain	AAAA	6.59737	germline	1	0.0832929886570655	0.270086189186896
16	34097052	34100253	10	gain	AAAAAAABBB	4.83452	germline	1	0.0832660979694948	0.270039487883154
16	34205886	34958121	2	neutral	AA	33.6193	somatic	0	5.61227917871244e-23	0
16	35896014	36088074	2	neutral	AA	2.65331	germline	1	1.20611044733816e-13	3.63549190751655e-11
16	36123285	36126486	6	gain	-	-1	germline	1	0.0832898246816861	0.270080694609895
16	46785816	46811424	2	neutral	AA	54.5791	somatic	0	0.773959405634708	0.819930192856878
16	47195544	47201946	2	neutral	AA	54.568	somatic	0	0.22645090707131	0.671612263219652
16	49980414	49990017	2	neutral	AA	22.0759	somatic	0	0.126183608157532	0.340199421486712
16	50054037	50121258	2	neutral	AA	36.4898	somatic	0	0.00648197328936936	0.00850774068691418
16	50470167	50473368	2	neutral	AA	100	somatic	0	0.209868756333245	0.44731827170974
16	50562996	50591805	2	neutral	AA	59.9982	somatic	0	0.684727036182464	0.576637998867107
16	51052749	51232005	2	neutral	AA	13.8565	somatic	0	0.596009710361794	0.790233130051166
16	54372186	54384990	1	loss	A	-1	germline	1	0.00155347196382815	0.00159999971901015
16	70149915	70162719	3	gain	AAB	3.73443	germline	1	0.000533225696413516	0.000672468554354655
16	75121068	75124269	2	neutral	AA	100	somatic	0	0.127158936429648	0.339493539496746
16	75124269	75169083	2	neutral	AA	42.9273	somatic	0	0.775824159571491	0.678543262966539
16	76503900	76510302	0	loss	-	-1	germline	1	0.0144198152607292	0.0369740081214822
16	78338073	78350877	1	loss	A	-1	germline	1	0.000808059628362241	0.00105815643862261
16	80008995	80537160	2	neutral	AA	18.4076	somatic	0	0.0801364616667513	0.0286680882613617
16	86170920	86174121	2	neutral	AA	100	somatic	0	0.162859578709911	0.388810901566212
16	86497422	86503824	2	neutral	AA	54.5728	somatic	0	0.301489775169153	0.358274864533362
16	88331595	88354002	2	neutral	AA	47.3313	somatic	0	0.269669713971499	0.506145867576197
16	88821348	88840554	2	neutral	AA	63.4385	somatic	0	0.887019176391974	0.974007423417164
16	89042217	89071026	2	neutral	AA	10.9133	somatic	0	0.0841019184496908	0.127009415569026
16	89320704	89330307	2	neutral	AA	13.784	somatic	0	0.259269642932482	0.380084321841443
17	1885389	2154273	2	neutral	AA	24.6097	germline	1	0.0313653711020338	0.0343774184252603
17	16818054	16821255	4	gain	AAAB	20.2396	germline	1	0.0832921976540932	0.270084815534996
17	21289851	21302655	4	gain	AABB	0.243241	germline	1	0.000532702121517899	0.000671489827587579
17	21853227	21859629	5	gain	-	-1	germline	1	0.0143146144448072	0.0366442061116081
17	21859629	21968463	3	gain	-	-1	germline	1	2.48322025620244e-23	0
17	21968463	21978066	6	gain	AAAABB	-1	germline	1	NA	NA
17	21978066	21984468	13	gain	-	-1	germline	1	0.0143061278844343	0.0366314284611083
17	21984468	21987669	6	gain	AAAABB	-1	germline	1	NA	NA
17	21987669	22154121	6	gain	AAAABB	0.26911	somatic	0	9.23885311565878e-09	5.59138291222894e-10
17	22157322	22160523	4	gain	AABB	6.36939	germline	1	0.0832961527298052	0.270091683845489
17	26782767	26789169	4	gain	-	-1	germline	1	0.0143157379987441	0.0366460855067242
17	26789169	26805174	3	gain	-	-1	germline	1	0.000109186739416185	9.44502633435373e-05
17	26808375	26830782	4	gain	-	-1	germline	1	2.21351785100383e-05	1.23065892921881e-05
17	26830782	26843586	3	gain	-	-1	germline	1	0.000559006826656942	0.000754078679397585
17	26843586	26846787	1	loss	A	-1	germline	1	0.120926721156485	0.330323591089006
17	26846787	26865993	3	gain	-	-1	germline	1	0.000615701705730946	0.0033340392979726
17	26865993	26869194	8	gain	-	-1	germline	1	0.0832747971281474	0.270054596483395
17	26869194	26878797	3	gain	-	-1	germline	1	0.00270522231320126	0.00496601626538751
17	26936415	26939616	16	gain	AAAAAAAAAAABBBBB	100	germline	1	0.0832653071733943	0.270038114404638
17	41846673	41869080	2	neutral	AA	36.3792	somatic	0	0.846179388534837	0.620645677765718
17	42947817	42970224	2	neutral	AA	100	germline	1	0.0704596936481825	0.092035228753939
17	53181414	53376675	2	neutral	AA	100	somatic	0	0.279039085803685	0.672324003812855
17	56628891	56641695	2	neutral	AA	100	somatic	0	0.71254053796065	0.908904171538509
17	82585800	82589001	4	gain	AABB	7.38182	germline	1	0.0832961527298052	0.270091683845489
18	5323263	5326464	1	loss	A	-1	germline	1	0.0844175690400059	0.272033636470761
18	11507595	11513997	1	loss	A	-1	germline	1	0.0297518454377111	0.060101519326851
18	41283297	41289699	1	loss	A	-1	germline	1	0.0172927906059919	0.0456511784155853
18	47070705	47141127	2	neutral	AA	100	somatic	0	0.957751351876753	0.459079664186945
18	47742915	47768523	2	neutral	AA	27.2904	somatic	0	0.341028473747708	0.115769936322115
18	47986191	47998995	2	neutral	AA	100	somatic	0	0.633620134691922	0.868954563520007
18	50166072	50172474	1	loss	A	-1	germline	1	0.0271957091904639	0.059019906889931
18	52454787	52461189	2	neutral	AA	54.579	somatic	0	0.151839696985406	0.368518439034138
18	52790892	52794093	2	neutral	AA	72.8097	somatic	0	0.257328980631028	0.500944572817183
18	53402283	53405484	2	neutral	AA	100	somatic	0	0.997738891884776	0.963441324149242
18	53587941	53591142	3	gain	AAB	42.2394	germline	1	0.0833119745539766	0.270119158362366
18	54874743	54909954	2	neutral	AA	100	somatic	0	0.699206832932427	0.705210705779988
18	57278694	57281895	1	loss	A	-1	germline	1	0.0848470580782467	0.272774515775722
18	57397131	57413136	2	neutral	AA	100	germline	1	0.823062042622245	0.999561708969444
18	58206984	58235793	2	neutral	AA	34.3628	somatic	0	0.134687157283899	0.264163044273227
18	58696737	58699938	2	neutral	AA	100	germline	1	0.492282195545642	0.714197543250263
18	63216549	63267765	2	neutral	AA	100	somatic	0	0.0812569649650233	0.0747904070196842
18	65377224	65380425	2	neutral	AA	100	somatic	0	0.0931209020476133	0.286756026704051
18	69541725	69551328	1	loss	A	-1	germline	1	0.00492845368671172	0.00949384471408854
18	71244657	71427114	2	neutral	AA	54.5728	somatic	0	0.281948927423716	0.786211023996905
18	73053222	73059624	1	loss	A	-1	germline	1	0.0278190268865705	0.0580866051286788
18	74615310	74618511	3	gain	AAB	100	germline	1	0.0833016900913786	0.270101299694363
18	76154991	76158192	2	neutral	AA	100	somatic	0	0.141774519789578	0.36031490450402
18	76964844	76968045	3	gain	AAB	87.3092	germline	1	0.0833238425196039	0.270139765588687
18	77477004	77496210	2	neutral	AA	100	germline	1	0.31645417570961	0.636592285991549
18	77768295	77861124	2	neutral	AA	28.3041	somatic	0	0.703004702640772	0.782630773974824
18	79199142	79202343	4	gain	AAAB	24.3136	germline	1	0.0832921976540932	0.270084815534996
18	79519242	79522443	1	loss	A	-1	germline	1	0.0967122248014791	0.292660076881112
19	1856580	1901394	2	neutral	AA	36.3786	somatic	0	0.492159815723629	0.348101356427122
19	4993560	5019168	2	neutral	AA	36.3786	somatic	0	0.22454026391469	0.468890881888698
19	7448727	7451928	7	gain	AAAABBB	20.0024	germline	1	0.0832755879972573	0.270055970023104
19	8866770	8917986	2	neutral	AA	0.554053	germline	1	0.262917491568393	0.641431295884313
19	8917986	8921187	1	loss	A	-1	germline	1	0.123798793135798	0.334571987709239
19	12634347	12653553	2	neutral	AA	54.5678	somatic	0	0.97284556904423	0.955944822816376
19	14935866	14939067	0	loss	-	-1	germline	1	0.0832660979694948	0.270039487883148
19	15627282	15652890	2	neutral	AA	55.0905	somatic	0	0.143009576857196	0.321111129939586
19	18050439	18303318	2	neutral	AA	12.2362	somatic	0	0.38267618537943	0.277379276586816
19	19935828	19999848	1	loss	A	-1	germline	1	2.62869984122038e-13	6.66133814775094e-16
19	21084987	21094590	2	neutral	AA	9.09464	germline	1	0.458520895963928	0.893394062279483
19	21094590	21587544	2	neutral	AA	0.380168	germline	1	0.00292255659324826	0.0525238278706853
19	22096503	22118910	2	neutral	AA	100	germline	1	0.861653100904955	0.830869606824185
19	22957572	22960773	1	loss	A	-1	germline	1	0.0832827060930451	0.270068332109962
19	23296878	23303280	2	neutral	AA	100	somatic	0	0.164440374099036	0.527798356412796
19	24330801	24369213	4	gain	AABB	0.707603	germline	1	1.98031627762045e-09	7.57121032535224e-11
19	24369213	24420429	5	gain	AAABB	1.44371	germline	1	4.33258135395762e-08	4.13056111536747e-09
19	27243711	27336540	2	neutral	AA	5.24887	somatic	0	5.07184491496366e-07	9.43003856668234e-07
19	27336540	27346143	3	gain	AAB	1.39645	germline	1	0.00270315073621298	0.00496242662062774
19	27346143	27358947	6	gain	AAAABB	1.7023	germline	1	0.000532420733157115	0.000671283225267771
19	27358947	27368550	6	gain	AAAABB	0.429683	germline	1	0.0027016491807928	0.00495975502618118
19	27368550	27400560	5	gain	AAABB	0.261303	somatic	0	2.03953254662318e-07	3.05141391043762e-08
19	27400560	27406962	3	gain	AAB	8.56731	germline	1	0.0143178604795399	0.0366498445499606
19	27406962	27413364	2	neutral	AA	52.4702	germline	1	0.175952704477002	0.282061192626975
19	34391544	34394745	4	gain	AAAA	5.78216	germline	1	0.0832921976540932	0.270084815534996
19	35979240	35985642	2	neutral	AA	100	somatic	0	0.564724299735342	0.907595711534079
19	36347355	36356958	1	loss	A	-1	somatic	0	0.00568410126665194	0.00960088114789459
19	40339002	40486248	2	neutral	AA	35.557	somatic	0	0.562728006611329	0.439699234720994
19	44791593	44999658	2	neutral	AA	100	somatic	0	0.488270092410132	0.199917638842993
19	47835744	47899764	2	neutral	AA	36.3786	somatic	0	0.460617757295875	0.706869484459107
19	48668004	48671205	3	gain	AAB	7.75037	germline	1	0.0833008990214695	0.270099925986367
19	50825478	50831880	1	loss	A	-1	germline	1	0.0160523620562797	0.0419003199759292
19	53014962	53046972	3	gain	AAB	2.21752	germline	1	2.04393657381412e-07	3.05987618576253e-08
19	57195468	57205071	1	loss	A	-1	germline	1	0.00511465097839855	0.00955152591923314
20	64020	67221	8	gain	-	-1	germline	1	0.0832724245573233	0.270050475894863
20	243276	246477	2	neutral	AA	100	somatic	0	0.144799123466935	0.36449081007097
20	1581294	1603701	1	loss	A	-1	germline	1	1.19864645716608e-05	7.39198782540029e-06
20	7794435	7858455	2	neutral	AA	100	somatic	0	0.966304865937399	0.938239290069364
20	15710508	15716910	2	neutral	AA	100	somatic	0	0.185435463617358	0.445372072643103
20	19318035	19426869	2	neutral	AA	72.607	somatic	0	0.196228839691049	0.380612967342719
20	21142605	21161811	2	neutral	AA	100	somatic	0	0.715710127691622	0.918672504403644
20	26315421	26321823	1	loss	A	-1	somatic	0	0.0278402116093863	0.0566692582151048
20	26321823	26379441	2	neutral	AA	18.1415	somatic	0	0.000114775686321542	0.000582821981389037
20	28780191	28786593	8	gain	-	-1	germline	1	0.014308373894848	0.0366374409874256
20	28802598	28953045	9	gain	-	-1	somatic	0	9.63892192983198e-07	2.25301339251693e-07
20	28953045	28956246	4	gain	-	-1	germline	1	0.0832953617024927	0.270090310173191
20	28956246	29205924	9	gain	-	-1	somatic	0	NA	NA
20	29205924	29263542	3	gain	-	-1	somatic	0	0.000863468887258642	0.0034387845638818
20	29263542	29266743	6	gain	-	-1	germline	1	0.0832866608036648	0.270075200114488
20	29266743	29269944	4	gain	-	-1	germline	1	0.0832937796661228	0.270087562843895
20	29269944	29276346	3	gain	-	-1	germline	1	0.0836809157270039	0.270759892149441
20	29276346	29279547	5	gain	-	-1	germline	1	0.0832921976540932	0.270084815534996
20	29279547	29285949	3	gain	-	-1	germline	1	0.014349856123675	0.0367010010413282
20	29285949	29292351	4	gain	-	-1	germline	1	0.0143152386318353	0.0366460855067242
20	29292351	29365974	3	gain	-	-1	germline	1	4.60836918631718e-06	1.67026731101583e-06
20	29407587	29410788	5	gain	-	-1	germline	1	0.0832914066572059	0.270083441888196
20	29890938	29894139	7	gain	-	-1	germline	1	0.0832811242513897	0.270065584943858
20	30281460	30284661	4	gain	AABB	4.11299	germline	1	0.0832953617024927	0.270090310173191
20	30976077	30979278	4	gain	-	-1	germline	1	0.0832937796661228	0.270087562843895
20	30979278	31001685	3	gain	-	-1	germline	1	0.000539546109725414	0.000688001093147372
20	31072107	31075308	42	gain	-	-1	germline	1	0.0832653071733943	0.270038114404638
20	31161735	31164936	3	gain	-	-1	germline	1	0.0833420427266178	0.270171365564302
20	31164936	31168137	6	gain	-	-1	germline	1	0.0832874517640428	0.270076573730691
20	31168137	31184142	3	gain	-	-1	germline	1	0.000125734550190289	0.000144353349214033
20	31184142	31187343	32	gain	-	-1	germline	1	0.0832653071733943	0.270038114404638
20	31187343	31190544	5	gain	-	-1	germline	1	0.0832921976540932	0.270084815534996
20	31225755	31238559	3	gain	AAA	7.59725	germline	1	0.000533128864939065	0.000672661700514277
20	31238559	31244961	30	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAABBB	12.3389	germline	1	0.0143061278844343	0.0366314284611083
20	31244961	31248162	2	neutral	AA	32.1636	somatic	0	0.084042015615625	0.271385191750349
20	35524698	35527899	2	neutral	AA	100	somatic	0	0.398146158172943	0.637438327417736
20	37634157	37685373	2	neutral	AA	54.5831	somatic	0	0.248956921409276	0.339081793522831
20	38552844	38559246	2	neutral	AA	36.3801	somatic	0	0.377452558570664	0.783537001774527
20	41757045	41760246	2	neutral	AA	100	somatic	0	0.0841647893512139	0.271597536679202
20	43933725	43952931	2	neutral	AA	54.5678	somatic	0	0.423285269926702	0.775856400036242
20	49471455	49490661	2	neutral	AA	100	somatic	0	0.878734677219516	0.963454372172531
20	49615500	49618701	4	gain	AAAA	52.0141	germline	1	0.0832937796661228	0.270087562843895
20	49801158	49967610	2	neutral	AA	40.2743	somatic	0	0.0236714972630897	0.0100103991997623
20	51356844	51379251	2	neutral	AA	54.5686	germline	1	0.268017899275292	0.512169145480578
20	51651336	51654537	2	neutral	AA	100	germline	1	0.2160340057003	0.454554351827284
20	51747366	51782577	2	neutral	AA	38.8106	somatic	0	0.926148051109504	0.977932893268643
20	52070667	52077069	2	neutral	AA	100	somatic	0	0.929091553586466	0.970229263609872
20	54829929	54874743	2	neutral	AA	72.1727	somatic	0	0.144902911221177	0.393412493864857
20	61212723	61215924	2	neutral	AA	100	somatic	0	0.40495157326432	0.643340554659599
20	62102601	62153817	2	neutral	AA	16.9057	germline	1	0.861470546777561	0.713010423835956
20	62781213	62816424	2	neutral	AA	36.38	somatic	0	0.972935696875031	0.918643333372302
20	62973273	62992479	2	neutral	AA	18.2491	somatic	0	0.762786323827034	0.818152814555998
20	64087221	64090422	3	gain	AAB	63.2469	germline	1	0.0832969437632029	0.270093057522886
21	10691340	10694541	54	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBBB	100	germline	1	0.0832653071733943	0.270038114404638
21	10694541	10739355	8	gain	AAAAAABB	1.62603	germline	1	9.1418604794603e-11	1.3855583347322e-12
21	10752159	10755360	15	gain	AAAAAAAAABBBBBB	3.33868	germline	1	0.0832653071733943	0.270038114404638
21	14516535	14570952	2	neutral	AA	100	somatic	0	0.214082205814321	0.115865576096827
21	14884650	14919861	2	neutral	AA	36.7139	somatic	0	0.406891582683073	0.899820653383087
21	16385919	16392321	2	neutral	AA	100	somatic	0	0.306726792699275	0.331324360212097
21	19465281	19471683	1	loss	A	-1	germline	1	0.0235367882437298	0.055942494031161
21	19942230	19974240	2	neutral	AA	100	somatic	0	0.282598909398357	0.121123167470854
21	23732214	23783430	2	neutral	AA	100	germline	1	0.915921779353923	0.969075691642831
21	24401223	24484449	2	neutral	AA	21.8272	germline	1	0.35152094326644	0.54956601421939
21	31782729	31785930	4	gain	AAAB	13.5649	germline	1	0.0832961527298052	0.270091683845489
21	32176452	32202060	2	neutral	AA	100	somatic	0	0.343098577760477	0.401871555400801
21	34132263	34138665	2	neutral	AA	54.5678	somatic	0	0.415324369225474	0.735597341042288
21	40201359	40268580	2	neutral	AA	100	somatic	0	0.978727176156683	0.887314027185536
21	41805060	41808261	4	gain	AABB	54.1067	germline	1	0.0832953617024927	0.270090310173191
21	43335138	43338339	3	gain	AAA	31.9867	germline	1	0.0832993168999071	0.270097178585676
21	45338964	45489411	2	neutral	AA	15.6266	germline	1	0.315100460604565	0.66227966045663
21	46084797	46100802	2	neutral	AA	5.19235	somatic	0	0.557039335132928	0.84023899367451
22	10726551	10729752	10	gain	-	-1	germline	1	0.0832660979694948	0.270039487883154
22	11619630	11629233	4	gain	AABB	6.51437	germline	1	0.0143153634721219	0.0366457096209544
22	16558773	16568376	2	neutral	AA	12.6487	somatic	0	0.0982557952613479	0.211883010508666
22	17403837	17410239	1	loss	A	-1	germline	1	0.0291610281800198	0.0568423097922275
22	17410239	17442249	2	neutral	AA	100	somatic	0	0.697545642627068	0.855447098422874
22	17874384	17877585	4	gain	AAAA	2.07191	germline	1	0.0832961527298052	0.270091683845489
22	19615728	19618929	2	neutral	AA	100	somatic	0	0.262837325987054	0.506850439953026
22	22346181	22355784	2	neutral	AA	1.21863	germline	1	0.740272211416232	0.413688953669311
22	23719410	23729013	2	neutral	AA	54.5679	somatic	0	0.288143610210633	0.283239993179423
22	26747556	26750757	2	neutral	AA	100	somatic	0	0.516094960884502	0.732028642934608
22	29119497	29122698	3	gain	AAB	9.0431	germline	1	0.083314348037555	0.270123279715835
22	30454314	30457515	1	loss	A	-1	somatic	0	0.118665141053996	0.326947495243422
22	31152132	31155333	2	neutral	AA	100	germline	1	0.244493526372256	0.486879359299538
22	31638684	31645086	2	neutral	AA	54.8558	somatic	0	0.128999044974963	0.152339988136606
22	32144442	32147643	1	loss	A	-1	germline	1	0.122746150555744	0.33301911517735
22	33127149	33162360	2	neutral	AA	36.5124	somatic	0	0.627759631622479	0.778721802752017
22	34465167	34471569	1	loss	A	-1	germline	1	0.0292614684949449	0.0598848832831568
22	35156583	35159784	2	neutral	AA	100	somatic	0	0.206384550171698	0.443206949775495
22	36747480	36753882	1	loss	A	-1	germline	1	0.0230728042479942	0.0565355233139947
22	37653363	37656564	2	neutral	AA	100	somatic	0	0.285307904309094	0.530472042748765
22	37710981	37739790	2	neutral	AA	37.5732	somatic	0	0.0303341648623776	0.111827700586726
22	39820440	39823641	2	neutral	AA	100	somatic	0	0.972662917294109	0.957272993018357
22	41417739	41420940	2	neutral	AA	100	somatic	0	0.517700770084116	0.733182306881003
22	41625804	41731437	2	neutral	AA	36.3915	somatic	0	0.0572520995511044	0.011332762313607
22	42323622	42326823	3	gain	AAA	10.2213	germline	1	0.0833365031923272	0.270161747894831
22	43335138	43344741	2	neutral	AA	21.8355	germline	1	0.288239647748269	0.456075859643881
22	45326160	45329361	3	gain	AAB	10.3742	somatic	0	0.0833317552574609	0.270153504377034
22	46475319	46481721	2	neutral	AA	100	somatic	0	0.474841123641987	0.908852789708389
22	46875444	46901052	2	neutral	AA	46.2141	somatic	0	0.618508151104912	0.598275816885226
22	47835744	47877357	2	neutral	AA	100	somatic	0	0.0385063450197948	0.00344583962417633
22	48603984	48610386	2	neutral	AA	47.6236	somatic	0	0.125238248613051	0.305173608216164
22	48792843	48808848	2	neutral	AA	63.2069	somatic	0	0.298825738444392	0.279893025128464
22	49993218	50028429	2	neutral	AA	36.379	germline	1	0.371556756171034	0.705565592814824
22	50188479	50191680	2	neutral	AA	54.5678	somatic	0	0.173213885963195	0.402244291678776
22	50598207	50611011	2	neutral	AA	100	somatic	0	0.0942588476072144	0.213504038638132
22	50643021	50646222	4	gain	AABB	37.2403	germline	1	0.0832921976540932	0.270084815534996
X	3524301	3527502	2	gain	AA	9.92289	germline	1	0.314920364645729	0.560333306673325
X	55674993	55678194	0	loss	-	-1	germline	1	0.0832660979694948	0.270039487883148
X	62505927	62515530	2	gain	AA	32.5154	somatic	0	0.0423451410546831	0.0880559032790731
X	66961719	66964920	2	gain	-	-1	germline	1	0.867629322977208	0.924709153122392
X	108773181	108776382	0	loss	-	-1	germline	1	0.0832660979694948	0.270039487883148
X	112598376	112604778	2	gain	-	-1	germline	1	0.983506497162287	0.745772042513941
X	119739807	119743008	0	loss	-	-1	germline	1	0.0832660979694948	0.270039487883148
X	129365214	129368415	0	loss	-	-1	germline	1	0.0832660979694948	0.270039487883148
X	140722362	140725563	2	gain	AA	11.0695	germline	1	0.687373166826391	0.842195488323389
X	141788295	141794697	0	loss	-	-1	germline	1	0.0143219813817483	0.0366788004845831
Y	10121562	10124763	3	gain	AAB	3.62887	somatic	0	0.0837583585930259	0.270893403060839
Y	10656129	10659330	9	gain	-	-1	germline	1	0.0832700520412569	0.270046355352226
Y	10752159	10755360	5	gain	-	-1	germline	1	0.0832921976540932	0.270084815534996
Y	10755360	10758561	2	gain	-	-1	germline	1	0.0855410672321826	0.273970469972976
Y	10758561	10764963	6	gain	-	-1	germline	1	0.0143133661427746	0.0366438302427047
Y	10764963	10774566	3	gain	-	-1	germline	1	0.00272077110032115	0.00501791004032381
Y	10774566	10777767	5	gain	-	-1	germline	1	0.0832914066572059	0.270083441888196
Y	10777767	10784169	2	gain	-	-1	germline	1	0.120506538148549	0.392494765742015
Y	10784169	10790571	4	gain	-	-1	germline	1	0.0143151137925089	0.0366457096209544
Y	10790571	10793772	3	gain	-	-1	germline	1	0.0833760778382737	0.270230451016277
Y	10793772	10796973	6	gain	-	-1	germline	1	0.0832827060930451	0.270068332109969
Y	10796973	10803375	4	gain	-	-1	germline	1	0.0143153634721219	0.0366464613958674
Y	10803375	10806576	2	gain	-	-1	germline	1	0.331758403039307	0.576705723973686
Y	10806576	10809777	5	gain	-	-1	germline	1	0.0832921976540932	0.270084815534996
Y	10812978	10883400	2	gain	-	-1	somatic	0	0.051719055182972	0.000496951083479358
Y	10883400	10896204	3	gain	-	-1	germline	1	0.00270337831112233	0.00496280838464247
Y	10925013	10928214	6	gain	-	-1	germline	1	0.0832906156664035	0.270082068246496
Y	10928214	10934616	2	gain	-	-1	germline	1	0.663661500860444	0.674540966721437
Y	10934616	10937817	6	gain	-	-1	germline	1	0.0832850789011628	0.270072452897382
Y	10937817	10985832	3	gain	-	-1	germline	1	2.88222030990479e-05	1.47841425683914e-05
Y	10985832	10989033	14	gain	-	-1	germline	1	0.0832653071733943	0.270038114404638
Y	10989033	10998636	2	gain	-	-1	germline	1	0.030298034407966	0.140298131447569
Y	10998636	11001837	8	gain	-	-1	germline	1	0.0832732154081804	0.270051849419274
Y	11005038	11040249	2	gain	AA	13.7666	germline	1	0.694000307045665	0.622116796922241
Y	11289927	11302731	25	gain	AAAAAAAAAAAAAAAAABBBBBBBB	18.7113	germline	1	0.000532029657686187	0.000670952785506773
Y	11302731	11334741	19	gain	AAAAAAAAAAAABBBBBBB	15.4288	germline	1	9.63568724601303e-07	2.25190435410028e-07
Y	11530002	11533203	18	gain	AAAAAAAAAAAAAAAAAB	8.13328	germline	1	0.0832653071733943	0.270038114404638
Y	11686851	11690052	4	gain	AAAA	15.9478	germline	1	0.0832945706812652	0.270088936505993
Y	11690052	11693253	8	gain	AAAAABBB	100	germline	1	0.0832724245573233	0.270050475894863
Y	11693253	11706057	2	gain	AA	5.01329	germline	1	0.00378179443245774	0.00587290735283785
Y	11706057	11709258	2	gain	AB	6.25715	germline	1	0.169851618413694	0.397920715920226
Y	11715660	11718861	3	gain	AAA	6.58722	germline	1	0.0833001079576457	0.270098552283472
Y	11718861	11722062	28	gain	AAAAAAAAAAAAAAAAAAAAAAAAABBB	51.8892	germline	1	0.0832653071733943	0.270038114404638
Y	11722062	11725263	16	gain	AAAAAAAAAABBBBBB	62.0421	germline	1	0.0832653071733943	0.270038114404638
Y	11725263	11744469	2	gain	AA	7.4325	germline	1	0.102785732834009	0.013263861930128
Y	11744469	11747670	6	gain	AAAABB	29.4368	germline	1	0.0832827060930451	0.270068332109969
Y	26635521	26641923	4	gain	AABB	27.6195	germline	1	0.0143153634721219	0.0366460855067242
Y	26651526	26654727	2	gain	AA	47.4214	germline	1	0.224767663933776	0.464710581577453
Y	56827353	56836956	39	gain	AAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBB	100	germline	1	0.00269987559793384	0.00495761869996014
Y	56836956	56843358	10	gain	AAAAAAAABB	100	germline	1	0.0143068765200137	0.0366336830573003
