chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	820348	823409	3	gain	-	-1	germline	1	0.0832862963086588	0.270074601767563
1	16612047	16636535	7	gain	-	-1	germline	1	0.00270038970568822	0.00495826493318985
1	16722243	16725304	4	gain	-	-1	germline	1	0.0832802875832591	0.270064166555308
1	31430348	31433409	4	gain	-	-1	germline	1	0.0832832919020623	0.270069384124646
1	33224094	33233277	1	loss	A	-1	germline	1	0.00270992631532902	0.00497975224102509
1	55661224	55667346	0	loss	-	-1	germline	1	0.0143114479937905	0.0366474698821925
1	72288576	72346735	1	loss	A	-1	germline	1	5.14411416960112e-14	2.22044604925031e-16
1	93822711	93825772	0	loss	-	-1	germline	1	0.0832652673060823	0.270038079812314
1	105472877	105482060	1	loss	A	-1	germline	1	0.00275461882087836	0.00513331723101051
1	125069399	125164290	4	gain	-	-1	somatic	0	1.3496918958178e-06	1.14191918287876e-06
1	151393999	151403182	2	neutral	AA	100	germline	1	0.132025452252171	0.325434204867271
1	152581667	152612277	1	loss	A	-1	germline	1	4.39799499586487e-08	4.37810898645807e-09
1	152639826	152645948	2	neutral	AA	54.5678	somatic	0	0.924589832972698	0.725595202521814
1	152789815	152798998	1	loss	A	-1	germline	1	0.00270988299602214	0.0049796795053012
1	160500474	160546389	2	neutral	AA	36.3786	somatic	0	0.277565226969149	0.0622215760537196
1	160714744	160760659	2	neutral	AA	100	somatic	0	0.0133683778139778	0.0609161938227556
1	169257995	169273300	1	loss	A	-1	germline	1	0.000108010907322936	9.13932036442633e-05
1	177143131	177179863	2	neutral	AA	54.5678	somatic	0	0.0297872713076511	0.0792215910063121
1	177687989	177730843	2	neutral	AA	54.5678	somatic	0	0.124224995954598	0.28219069901339
1	193115429	193341943	2	neutral	AA	76.4042	somatic	0	0.164891984435041	0.0734982016561393
1	194480635	194483696	0	loss	-	-1	germline	1	0.0832652673060823	0.270038079812314
1	197768149	197789576	2	neutral	AA	100	somatic	0	0.322454473557629	0.441852187394778
1	202175989	202206599	2	neutral	AA	26.5143	somatic	0	0.844524481201025	0.842449758078082
1	205570638	205913470	2	neutral	AA	81.6313	somatic	0	0.288203408824427	0.444751935139675
1	211778346	211851810	2	neutral	AA	22.4838	somatic	0	0.0716145730293946	0.0980618563804121
1	212828269	212874184	2	neutral	AA	36.3832	germline	1	0.0454694204808438	0.0463235077431901
1	219094136	219492066	2	neutral	AA	22.4333	somatic	0	0.000726666814021529	0.00183616641271178
1	234775639	234781761	7	gain	AAAAABB	21.7886	germline	1	0.0143082481695919	0.0366346211105676
1	236094930	236097991	5	gain	AAABB	31.2795	germline	1	0.0832787854567794	0.270061557798231
1	242718934	242856679	2	neutral	AA	100	germline	1	0.30367219406803	0.334344989398558
2	189782	293856	2	neutral	AA	7.30061	somatic	0	0.189990268674899	0.341996773201093
2	664237	716274	2	neutral	AA	13.7833	germline	1	0.78769132258987	0.423869871836004
2	3180379	3183440	5	gain	AAAAA	4.352	germline	1	0.0832765323082117	0.270057644697107
2	14763203	14861155	2	neutral	AA	72.6799	somatic	0	0.333467762335044	0.739282152751223
2	16804890	16811012	2	neutral	AA	100	somatic	0	0.629692210910097	0.489855216996628
2	27105155	27163314	2	neutral	AA	100	somatic	0	0.437949805496435	0.478780647100297
2	35752480	35767785	1	loss	A	-1	germline	1	0.000108007562955088	9.13487143754388e-05
2	38293110	38388001	2	neutral	AA	51.852	somatic	0	0.0163151856653813	0.0120138448339397
2	42073445	42082628	2	neutral	AA	54.5679	somatic	0	0.0938110437455606	0.174773272948154
2	48623985	48630107	1	loss	A	-1	germline	1	0.0143304228719601	0.0366724648920403
2	52811433	52842043	2	neutral	AA	100	somatic	0	0.830963004540293	0.438070565657288
2	74755742	74841450	2	neutral	AA	27.797	somatic	0	0.711871533112971	0.549859981468534
2	84036694	84042816	2	neutral	AA	100	somatic	0	0.981996000643725	0.992756461628416
2	89773008	89782191	5	gain	-	-1	germline	1	0.00270071357571315	0.00495862718767637
2	89782191	89791374	4	gain	-	-1	germline	1	0.0143108553861336	0.0366392604900262
2	89794435	89806679	5	gain	AAABB	30.6263	germline	1	0.000532349722758171	0.000671239034921056
2	89809740	89825045	5	gain	AAAAA	1.22924	germline	1	0.000107592784655535	9.08518380944301e-05
2	89825045	89843411	28	gain	AAAAAAAAAAAAAAAAAABBBBBBBBBB	30.8615	germline	1	2.20949055901807e-05	1.22909387384462e-05
2	89843411	89849533	4	gain	AAAB	76.5995	germline	1	0.0143110924265988	0.0366392604900262
2	91410643	91413704	5	gain	-	-1	germline	1	0.0832772833522475	0.27005894905955
2	100826279	100850767	2	neutral	AA	21.8809	somatic	0	0.106004935666067	0.291816513588095
2	107535991	107603333	2	neutral	AA	57.4879	somatic	0	0.419974327501687	0.43386678911682
2	109198114	109201175	13	gain	AAAAAAAAAAAAA	10.3487	germline	1	0.0832682711859448	0.270043297013749
2	112993754	113009059	2	neutral	AA	100	somatic	0	0.397820707395835	0.466213692844
2	117040396	117046518	1	loss	A	-1	germline	1	0.0143535785061766	0.0367733102100779
2	125684660	125693843	1	loss	A	-1	germline	1	0.00273828371277695	0.00506759237596877
2	130291465	130319014	2	neutral	AA	39.4106	somatic	0	0.402623848507931	0.356100594413277
2	132241322	132247444	3	gain	AAB	0.793899	somatic	0	0.0143142928118795	0.0366446142589218
2	132268871	132281115	2	neutral	AA	0.805269	somatic	0	0.121616327230574	0.209101198638646
2	136343062	137350131	2	neutral	AA	66.1037	somatic	0	0.00120103988686177	0.0288699274537236
2	137735817	137763366	2	neutral	AA	100	somatic	0	0.364235824151485	0.294951787772323
2	138170479	138204150	2	neutral	AA	61.8082	somatic	0	0.95339151722879	0.853498803142619
2	148688075	148749295	2	neutral	AA	36.3915	somatic	0	0.408960530867279	0.683211090802134
2	153913202	154001971	2	neutral	AA	36.503	somatic	0	0.907730550956338	0.959053825874042
2	154038703	154044825	1	loss	A	-1	germline	1	0.014366298435991	0.0368127127594106
2	156294660	156380368	2	neutral	AA	100	somatic	0	0.168088371713945	0.134178237522438
2	158819985	158829168	2	neutral	AA	100	somatic	0	0.33569705736749	0.744226078482398
2	166781646	166821439	2	neutral	AA	37.3709	somatic	0	0.984391311589606	0.697472179428854
2	201912743	201918865	2	neutral	AA	100	somatic	0	0.130024798695033	0.344652007864952
2	203039191	203259583	2	neutral	AA	100	somatic	0	0.021621982887978	0.0470141160409312
2	207486824	207496007	1	loss	A	-1	germline	1	0.00273162175392888	0.00503362407856367
2	209155069	209372400	2	neutral	AA	27.8396	somatic	0	0.573526195258423	0.7989586097036
2	209981539	210039698	2	neutral	AA	100	somatic	0	0.0203973828216827	0.014323524976025
2	214291427	214318976	2	neutral	AA	36.4714	somatic	0	0.0360034055437263	0.0170192557935364
2	221925561	221943927	2	neutral	AA	36.3786	somatic	0	0.85048144042427	0.689555244971691
2	222865288	222868349	4	gain	AABB	19.4335	somatic	0	0.0832847940943863	0.270071992936907
2	241589425	241592486	3	gain	AAB	4.63432	somatic	0	0.0832862963086588	0.270074601767563
3	186721	192843	1	loss	A	-1	germline	1	0.0143722457361631	0.0367797553741529
3	1659062	1668245	1	loss	A	-1	germline	1	0.00293253466304636	0.00571210277616119
3	32060914	32067036	1	loss	A	-1	germline	1	0.0143567872706697	0.03677116204163
3	39658316	39780756	2	neutral	AA	24.1478	somatic	0	0.863701907785895	0.925641640691753
3	42189763	42257105	2	neutral	AA	83.5282	somatic	0	0.209146538988381	0.41967134065418
3	75726079	75738323	3	gain	AAB	0.721214	germline	1	0.0496311322971434	0.139010884989976
3	76616830	76870893	2	neutral	AA	89.191	somatic	0	0.136616093193079	0.119003686768893
3	80011479	80017601	1	loss	A	-1	germline	1	0.014354885704232	0.0367743843354711
3	81594016	81606260	2	neutral	AA	100	germline	1	0.20866047342858	0.321103696267497
3	81719517	81771554	2	neutral	AA	18.2159	somatic	0	0.0808946575616417	0.295558768471974
3	85499852	85530462	2	neutral	AA	54.5678	somatic	0	0.303724240925954	0.401933037918745
3	90507648	90666820	3	gain	-	-1	somatic	0	7.04915165588627e-25	0
3	90666820	90715796	1	loss	A	-1	germline	1	4.95718990888073e-08	3.25487901076116e-08
3	91517778	93798223	2	neutral	AA	13.9281	somatic	0	1.32246012386581e-08	2.18746583513507e-07
3	98680518	98698884	1	loss	A	-1	somatic	0	0.000115393875317854	0.000106544294317223
3	109164443	109427689	2	neutral	AA	90.1309	somatic	0	0.000123269190880231	9.44987272660791e-05
3	116731235	116767967	2	neutral	AA	92.8741	somatic	0	0.206394596394259	0.353481948527697
3	120474838	120514631	2	neutral	AA	54.5784	somatic	0	0.248526673683912	0.25012284396811
3	128586488	128663013	2	neutral	AA	3.84801	germline	1	0.503469433476922	0.462287757767567
3	128663013	128684440	3	gain	AAB	78.5603	germline	1	4.62033891757782e-06	1.68270183142916e-06
3	128684440	128696684	4	gain	AAAB	100	germline	1	0.000532420679675088	0.000671356737576012
3	162808468	162826834	1	loss	A	-1	germline	1	2.21873481838502e-05	1.23366361777233e-05
3	175425910	175655485	2	neutral	AA	100	somatic	0	0.423993017537161	0.118259947498825
3	192019591	192114482	2	neutral	AA	54.5728	germline	1	0.181087303932393	0.00985350657068851
4	554041	557102	4	gain	-	-1	germline	1	0.0832847940943863	0.270071992936907
4	35238232	35244354	1	loss	A	-1	germline	1	0.0143109739059333	0.0366460420462219
4	37788045	38048230	1	loss	A	-1	germline	1	2.14504949020394e-55	0
4	45024249	45027310	0	loss	-	-1	germline	1	0.0832652673060823	0.270038079812314
4	61073072	61076133	0	loss	-	-1	germline	1	0.0832652673060823	0.270038079812314
4	63200467	63203528	0	loss	-	-1	germline	1	0.0832652673060823	0.270038079812314
4	68569461	68621498	1	loss	A	-1	germline	1	9.23807245894753e-11	1.41386902186014e-12
4	91009652	91015774	0	loss	-	-1	germline	1	0.014306352275293	0.0366321231960688
4	121359467	121368650	1	loss	A	-1	germline	1	0.00276650358846007	0.00517626027236939
4	137169532	137178715	1	loss	A	-1	germline	1	0.00273577008539897	0.00506796194442749
4	171452732	171458854	0	loss	-	-1	germline	1	0.014306352275293	0.0366321231960688
4	172502655	172511838	1	loss	A	-1	germline	1	0.00270916831880302	0.0049714666379671
5	7024995	7031117	2	neutral	AA	100	somatic	0	0.823741458486767	0.822688141941922
5	10453315	10462498	2	neutral	AA	34.1503	somatic	0	0.771490293023944	0.835388684540943
5	12810285	12822529	1	loss	A	-1	germline	1	0.0144615965618633	0.0371000286137734
5	16250849	16388594	2	neutral	AA	63.7427	somatic	0	0.740248465412047	0.512242519085143
5	17282406	17288528	2	neutral	AA	100	somatic	0	0.779760963003822	0.740823168074878
5	23900288	23906410	1	loss	A	-1	germline	1	0.0150971560595959	0.0390178986676007
5	38048230	38066596	2	neutral	AA	54.5683	somatic	0	0.575051726183598	0.402565362474466
5	45002822	45015066	1	loss	A	-1	germline	1	0.000544693282182314	0.000700879555365908
5	46270076	46276198	1	loss	A	-1	germline	1	0.0144001079728256	0.0367743843354711
5	52909385	52915507	1	loss	A	-1	somatic	0	0.0168990800035663	0.044529283137828
5	54678643	54690887	2	neutral	AA	100	somatic	0	0.643147645127868	0.916878684145761
5	58027377	58039621	1	loss	A	-1	germline	1	0.000539873877179061	0.000692026527748024
5	76883137	76919869	2	neutral	AA	15.643	somatic	0	0.0924664217601608	0.351134666297305
5	77094346	77112712	2	neutral	AA	100	somatic	0	0.152186618186981	0.132713971397479
5	84651955	84661138	1	loss	A	-1	germline	1	0.0143858137010701	0.0368715269577411
5	86917095	86923217	1	loss	A	-1	germline	1	0.0143174938284756	0.0366581802035599
5	91202495	91208617	1	loss	A	-1	germline	1	0.014444977841529	0.0370124403785814
5	92341187	92347309	1	loss	A	-1	germline	1	0.0146099940467563	0.0375355905646552
5	93785979	93862504	2	neutral	AA	54.5693	germline	1	0.33516030976284	0.496875789478236
5	105096374	105169838	1	loss	A	-1	germline	1	2.22571904064832e-17	0
5	106792168	106798290	2	neutral	AA	100	somatic	0	0.543359408982407	0.543612278522137
5	137898050	137996002	2	neutral	AA	38.7688	somatic	0	0.0152586080589735	0.0591634791548843
5	138779618	138853082	2	neutral	AA	54.6985	somatic	0	0.163598023788943	0.100105670605807
5	140940684	140959050	2	neutral	AA	25.4912	germline	1	0.935684115621831	0.996682325065468
5	145991334	146003578	2	neutral	AA	54.5678	somatic	0	0.0357839299256166	0.10443074538743
5	156049780	156062024	1	loss	A	-1	germline	1	0.000534373357687845	0.00067384609197596
5	166463302	166766341	2	neutral	AA	21.8299	somatic	0	0.314466274923173	0.16175792536414
5	178584862	178587923	4	gain	AAAA	30.1642	germline	1	0.0832832919020623	0.270069384124646
5	180657159	180660220	3	gain	AAA	38.4361	germline	1	0.0832923053852384	0.270085037274138
5	180951015	181003052	1	loss	A	-1	germline	1	9.40121377001861e-13	3.5527136788005e-15
5	181045906	181048967	4	gain	AABB	14.832	germline	1	0.0832847940943863	0.270071992936907
6	32486393	32565979	0	loss	-	-1	somatic	0	1.9771816386859e-09	7.60917995279442e-11
6	35657589	35663711	1	loss	A	-1	germline	1	0.0143318468820084	0.0367081979215884
6	54063382	54066443	0	loss	-	-1	germline	1	0.0832652673060823	0.270038079812314
6	60231297	60237419	3	gain	-	-1	germline	1	0.0143167824368908	0.0366546097921855
6	60237419	60240480	5	gain	-	-1	germline	1	0.0832750302366009	0.270055035986018
6	61409782	61422026	1	loss	A	-1	germline	1	0.00061975970607425	0.000809382140264936
6	66298199	66337992	1	loss	A	-1	germline	1	4.3009317094045e-10	1.0430212249446e-11
6	68520485	68532729	3	gain	-	-1	germline	1	0.000544345887934472	0.000696886701974764
6	68976574	68982696	1	loss	A	-1	germline	1	0.0143565495627149	0.0367439614085671
6	76387255	76390316	0	loss	-	-1	germline	1	0.0832652673060823	0.270038079812314
6	78257526	78327929	1	loss	A	-1	germline	1	1.01375295041171e-16	0
6	78811567	78817689	1	loss	A	-1	germline	1	0.0143426496877017	0.036702121158376
6	110949006	110976555	2	neutral	AA	54.5678	somatic	0	0.0398647198063437	0.0339443545804232
6	111279594	111362241	2	neutral	AA	100	somatic	0	0.896706600692349	0.400857050763329
6	111735683	111781598	2	neutral	AA	100	somatic	0	0.0548415536229879	0.144928401914148
6	114900757	114958916	2	neutral	AA	38.4942	somatic	0	0.703794125351859	0.703642145917182
6	121653323	121659445	2	neutral	AA	21.8271	somatic	0	0.626009343012072	0.936361717006535
6	124487809	124521480	2	neutral	AA	100	somatic	0	0.269076107049313	0.481443752645561
6	124637798	124640859	2	neutral	AA	100	somatic	0	0.414554394913709	0.651586608571332
6	125975455	126027492	2	neutral	AA	23.697	somatic	0	0.956010632267519	0.973405183517234
6	126768254	126777437	2	neutral	AA	100	germline	1	0.131533964439646	0.247123812415701
6	127224343	127297807	2	neutral	AA	36.3786	somatic	0	0.189085149986515	0.402321060454673
6	139933615	140016262	2	neutral	AA	100	somatic	0	0.124833833651403	0.421079732704343
6	146778011	146790255	2	neutral	AA	100	somatic	0	0.444417890697035	0.90478555824295
6	153420381	153429564	3	gain	AAB	3.82349	germline	1	0.00274982969425785	0.00511204283901678
6	153429564	153432625	2	neutral	AA	1.95907	somatic	0	0.872055307013109	0.926344936874813
6	157307851	157310912	8	gain	AAAAABBB	5.33551	germline	1	0.0832705241534503	0.270047209963117
6	157313973	157317034	4	gain	AABB	31.3777	germline	1	0.0832817897316867	0.27006677533078
6	160194374	160310692	2	neutral	AA	15.6576	somatic	0	0.167704076212319	0.314784368776843
6	165655198	165691930	2	neutral	AA	71.3076	somatic	0	0.015419569693117	0.0289084134804892
6	168495806	168511111	2	neutral	AA	23.884	somatic	0	0.671036117014812	0.86853720853743
7	9761529	9764590	0	loss	-	-1	germline	1	0.0832652673060823	0.270038079812314
7	16131470	16134531	0	loss	-	-1	germline	1	0.0832652673060823	0.270038079812314
7	26095025	26107269	1	loss	A	-1	germline	1	0.0148649847062936	0.0383075663429937
7	27377584	27435743	2	neutral	AA	54.5678	somatic	0	0.0124702379670514	0.0629381549263265
7	31274237	31280359	1	loss	A	-1	germline	1	0.0143093147075286	0.036639974286338
7	38271683	38329842	1	loss	A	-1	somatic	0	6.19312530241469e-14	1.11022302462516e-16
7	45679303	45911939	2	neutral	AA	54.5787	somatic	0	0.711058256017436	0.935281497614946
7	53466487	53931759	2	neutral	AA	97.028	somatic	0	0.724311998280425	0.828841567640753
7	57409055	57418238	1	loss	A	-1	germline	1	0.00272386455871785	0.00501214327529764
7	57485580	57497824	3	gain	AAB	1.37624	germline	1	0.000533983963288876	0.000675593785852135
7	57880449	57938608	2	neutral	AA	2.71302	somatic	0	3.26308638577881e-08	1.96972308907917e-07
7	58061048	61112865	2	neutral	AA	15.2226	somatic	0	2.12990882730284e-17	0
7	61734248	61740370	3	gain	AAB	9.30385	somatic	0	0.0143141742678339	0.0366435434503896
7	61908725	61920969	3	gain	-	-1	germline	1	0.000532942692414878	0.00067203717631048
7	62297472	62358692	3	gain	AAB	0.515119	germline	1	2.50540880746175e-09	1.15662379673864e-09
7	62401546	62404607	5	gain	-	-1	germline	1	0.0832772833522475	0.27005894905955
7	62438278	62456644	3	gain	AAB	1.9163	germline	1	2.2873119679253e-05	1.39175041697914e-05
7	62566840	62572962	1	loss	A	-1	somatic	0	0.0145043564599143	0.0370214431600447
7	65220727	65229910	1	loss	A	-1	somatic	0	0.00293213894559538	0.00571532005160069
7	75723018	75741384	3	gain	AAB	3.6788	germline	1	2.22569215867872e-05	1.24212613273889e-05
7	97704059	97722425	2	neutral	AA	100	somatic	0	0.157593146191236	0.165945036156487
7	100731388	100740571	1	loss	A	-1	germline	1	0.00270689549144191	0.00496819948521054
7	100948719	100954841	3	gain	AAB	0.816253	germline	1	0.0143182052512416	0.0366585372614299
7	100954841	100957902	5	gain	-	-1	germline	1	0.0832787854567794	0.270061557798231
7	100957902	100960963	12	gain	AAAAAAABBBBB	6.04751	germline	1	0.0832682711859448	0.270043297013749
7	100960963	100976268	3	gain	AAB	0.958469	germline	1	0.0001077478372605	9.10157000338918e-05
7	106100382	106103443	4	gain	-	-1	germline	1	0.0832832919020623	0.270069384124646
7	132948413	133061670	2	neutral	AA	54.5681	somatic	0	0.998654031395627	0.991292178172393
7	136535905	136569576	2	neutral	AA	27.2914	germline	1	0.341239353035846	0.273223172851802
7	149324763	149330885	2	neutral	AA	100	somatic	0	0.753017509242691	0.565492197126307
7	152401068	152407190	12	gain	AAAAAAAAAABB	7.58047	germline	1	0.0143070632096845	0.0366328368707176
7	154598866	154608049	1	loss	A	-1	germline	1	0.0027178644096671	0.00500738931028533
7	158593471	158596532	5	gain	AAABB	15.0667	germline	1	0.0832772833522475	0.27005894905955
8	4263973	4267034	1	loss	A	-1	somatic	0	0.0832810386547294	0.270065470940753
8	6109756	6122000	1	loss	A	-1	germline	1	0.000587585642819377	0.000763198044017255
8	15920261	15929444	1	loss	A	-1	germline	1	0.00271146456071976	0.00497582590516021
8	39376704	39529754	1	loss	A	-1	germline	1	7.69970594636222e-32	0
8	40916387	40922509	0	loss	-	-1	germline	1	0.0143061153040878	0.0366314095335829
8	43236625	43242747	4	gain	-	-1	germline	1	0.0143106183491319	0.0366385467058831
8	49627993	49698396	2	neutral	AA	54.579	germline	1	0.777415221297713	0.94674842235604
8	53601171	53631781	2	neutral	AA	100	somatic	0	0.711980681988511	0.681814333357692
8	68070518	68082762	2	neutral	AA	100	somatic	0	0.799526009625767	0.945374226498027
8	80541032	80556337	3	gain	AAB	4.48072	germline	1	0.000107828781648672	9.10755573769739e-05
8	108264509	108273692	1	loss	A	-1	germline	1	0.00273983665772123	0.00508246850236649
8	108879770	108885892	2	neutral	AA	100	germline	1	0.987404269331647	0.998929861885919
8	113504941	113544734	2	neutral	AA	100	somatic	0	0.446155011985224	0.480795287414115
8	119143303	119149425	1	loss	A	-1	germline	1	0.0143506079919809	0.0367504020724365
8	133422868	133428990	2	neutral	AA	54.5678	somatic	0	0.196024423634052	0.385250713176641
8	136147158	136153280	1	loss	A	-1	germline	1	0.0143267447569812	0.0366928289875613
8	136263476	136275720	2	neutral	AA	100	somatic	0	0.538266399274241	0.560531338739068
8	140594791	140934562	2	neutral	AA	47.6178	somatic	0	0.171323147322214	0.212581727501583
8	142428330	142523221	2	neutral	AA	4.72447	germline	1	0.0789426330834874	0.151313167899667
8	144124124	144127185	4	gain	AAAA	17.0177	germline	1	0.0832810386547294	0.270065470940745
9	22495289	22498350	1	loss	A	-1	germline	1	0.0832870474240258	0.270075906189798
9	40870472	40913326	5	gain	-	-1	somatic	0	0.000532270428396549	0.000671186728840145
9	40913326	40916387	7	gain	-	-1	germline	1	0.083271275153592	0.270048514288771
9	40922509	40925570	6	gain	-	-1	germline	1	0.0832727771703354	0.270051122953873
9	40925570	40928631	7	gain	-	-1	germline	1	0.0832720261592204	0.270049818619023
9	78312624	78318746	2	neutral	AA	36.3786	somatic	0	0.861508634995319	0.986607597067037
9	88720024	88729207	2	neutral	AA	100	somatic	0	0.175908615826634	0.208084260771107
9	93675783	93700271	2	neutral	AA	21.8499	germline	1	0.0276086193095422	0.0110067024615622
9	98656030	98698884	2	neutral	AA	54.8571	somatic	0	0.0619051849507235	0.136585519842108
9	99301901	99329450	2	neutral	AA	100	germline	1	0.33900523406012	0.495474525411268
9	104080122	104089305	2	neutral	AA	100	somatic	0	0.786838996420001	0.553199344172373
9	109522580	109534824	2	neutral	AA	54.5678	somatic	0	0.0928144363409082	0.217755810605103
9	110260281	110269464	1	loss	A	-1	germline	1	0.0143533408450838	0.0367189237686886
9	113602893	113609015	2	neutral	AA	54.5679	somatic	0	0.141810762270575	0.304811292167684
9	115819057	115828240	3	gain	AAB	7.42922	germline	1	0.00270239827207181	0.00496152609707978
9	128623220	128681379	2	neutral	AA	58.9948	somatic	0	0.00132235679317975	0.0102067134353901
9	129425202	129443568	3	gain	AAB	0.316288	germline	1	2.21803681960853e-05	1.23398807495567e-05
9	130276160	130294526	2	neutral	AA	8.18641	somatic	0	0.976206335700642	0.997078883211005
9	130928153	130958763	2	neutral	AA	75.7877	somatic	0	0.254554978948589	0.357249870758612
9	131111813	131117935	2	neutral	AA	36.3786	somatic	0	0.452275190024529	0.754002643363908
9	135320688	135326810	1	loss	A	-1	germline	1	0.0143107368671998	0.0366389035964362
9	137325643	137328704	4	gain	AAAA	6.37626	germline	1	0.0832832919020623	0.270069384124646
9	137411351	137546035	2	neutral	AA	56.4592	germline	1	0.0127101746081116	0.058897833560926
9	137714390	137717451	4	gain	AAAB	26.6258	germline	1	0.0832802875832591	0.270064166555308
9	137876623	138029673	2	neutral	AA	100	somatic	0	0.389967031167723	0.410161848730606
10	5846510	5852632	1	loss	A	-1	germline	1	0.014315596853538	0.036658894322347
10	12256244	12268488	1	loss	A	-1	germline	1	0.000533829116468863	0.000672718261535921
10	12559283	12687845	2	neutral	AA	31.9122	somatic	0	0.796682300846394	0.953560268639293
10	13468400	13483705	2	neutral	AA	36.3786	somatic	0	0.389898460769198	0.640583713457329
10	26572541	26719469	2	neutral	AA	0.568342	somatic	0	0.353642471481849	0.0596549376068466
10	27897954	27974479	2	neutral	AA	31.0447	somatic	0	0.87648087017539	0.846974728045716
10	38485953	38525746	3	gain	AAB	0.572119	germline	1	8.55389391066561e-10	5.39046363101647e-10
10	38525746	38528807	16	gain	AAAAAAAAAAAAAAAB	4.31609	germline	1	0.0832675202077494	0.270041992706491
10	38574722	38577783	2	neutral	AA	26.6279	somatic	0	0.0850177304285533	0.273068528413842
10	38577783	38580844	5	gain	AAABB	5.59183	germline	1	0.0832757812696629	0.270056340339263
10	38580844	38822663	3	gain	AAB	0.362731	somatic	0	7.96358534700899e-10	6.58567533839971e-10
10	39257325	39269569	1	loss	A	-1	germline	1	0.000560342279585815	0.00075144048417608
10	39336911	39361399	1	loss	A	-1	germline	1	5.84919457289919e-06	3.72479739085829e-06
10	41819382	41843870	2	neutral	AA	1.46238	germline	1	0.00480620967653672	0.00603261605691818
10	41856114	41914273	41	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBB	11.6716	somatic	0	4.59390207326395e-06	1.66342603136194e-06
10	42299959	42321386	3	gain	AAA	3.16436	germline	1	5.43801158292218e-06	2.3986556051403e-06
10	46514956	46560871	3	gain	AAB	0.619195	germline	1	9.21904438062591e-11	1.4122036873232e-12
10	55535723	55988751	2	neutral	AA	100	somatic	0	0.000185255373401747	0.00534494643369732
10	68630681	68722511	2	neutral	AA	100	somatic	0	1.78454331712182e-05	7.75449858736454e-06
10	69325528	69579591	2	neutral	AA	69.8565	somatic	0	0.624410591202554	0.938980710984977
10	79999235	80005357	2	neutral	AA	100	somatic	0	0.142692940168583	0.357459876131178
10	93228877	93259487	2	neutral	AA	70.3256	somatic	0	0.272154924166986	0.790170127196953
10	110413331	110422514	2	neutral	AA	27.2846	somatic	0	0.367853205335922	0.630023448274812
10	121607408	121641079	2	neutral	AA	100	germline	1	0.434900970324485	0.276486030439233
10	122586928	122593050	1	loss	A	-1	germline	1	0.0143399186301983	0.0366910422676214
10	128464048	128467109	6	gain	AAABBB	26.368	germline	1	0.0832720261592204	0.270049818619023
11	6697468	6709712	2	neutral	AA	55.8958	somatic	0	0.0132604134352903	0.0208178425892348
11	20138319	20600530	2	neutral	AA	27.0792	somatic	0	0.00504660245536168	0.00351610387294454
11	22483045	22495289	2	neutral	AA	54.6128	somatic	0	0.449110282123142	0.804730068327924
11	23958447	24013545	2	neutral	AA	100	somatic	0	0.611573513742634	0.208498055615196
11	24567586	24582891	2	neutral	AA	100	somatic	0	0.577724518994115	0.796732050991048
11	28984609	28987670	1	loss	A	-1	germline	1	0.083271275153592	0.270048514288779
11	33144508	33156752	2	neutral	AA	100	somatic	0	0.312457758577096	0.368367921259957
11	34534202	34546446	2	neutral	AA	19.0342	somatic	0	0.0250273643425209	0.068395250758097
11	37922729	37941095	2	neutral	AA	100	somatic	0	0.214010263893494	0.26131137213332
11	44020241	44029424	2	neutral	AA	100	somatic	0	0.967774794031764	0.997750742749571
11	45406874	45409935	1	loss	A	-1	germline	1	0.0832975636153337	0.270094168583834
11	46796568	46824117	2	neutral	AA	36.5722	somatic	0	0.434089857534014	0.556212776615533
11	54755168	54776595	1	loss	A	-1	germline	1	2.26450381260299e-05	1.31292875925615e-05
11	55116366	55122488	1	loss	A	-1	germline	1	0.0149181965441435	0.0384201423183012
11	61437331	61458758	2	neutral	AA	100	somatic	0	0.468088513637607	0.257764734445827
11	63426981	63430042	4	gain	AAAB	18.3734	germline	1	0.0832802875832591	0.270064166555308
11	64342220	64351403	2	neutral	AA	36.3786	somatic	0	0.456432751639526	0.448805031597598
11	69995887	70017314	2	neutral	AA	21.261	somatic	0	0.415837583453793	0.660020863991513
11	70369329	70372390	3	gain	AAB	31.3038	germline	1	0.0832938077092568	0.270087646196769
11	74311897	74318019	1	loss	A	-1	somatic	0	0.0143636823116584	0.0367568437239362
11	77268823	77278006	2	neutral	AA	36.3787	somatic	0	0.058760122525041	0.152984852249021
11	77302494	77366775	2	neutral	AA	100	somatic	0	0.983291060249563	0.915199817714641
11	80914474	80942023	2	neutral	AA	29.5303	somatic	0	0.346131805878285	0.710012837520268
11	84162195	84174439	2	neutral	AA	54.5678	somatic	0	0.53070730540726	0.581713721350931
11	85123349	85135593	2	neutral	AA	54.588	somatic	0	0.232849029217094	0.582207144302838
11	95071599	95083843	2	neutral	AA	100	somatic	0	0.505867705685548	0.681787251410125
11	95732775	95748080	2	neutral	AA	54.5679	somatic	0	0.454732331033145	0.311078739701517
11	97893841	97903024	2	neutral	AA	100	germline	1	0.296034978773364	0.57122855963743
11	104395405	104401527	1	loss	A	-1	germline	1	0.0144802678654192	0.0370769425411982
11	114261008	114285496	2	neutral	AA	100	somatic	0	0.153308182758329	0.476247141614148
11	117156714	117175080	2	neutral	AA	100	somatic	0	0.467467053366736	0.354426417478903
11	131264863	131267924	1	loss	A	-1	germline	1	0.0832832919020623	0.270069384124654
11	134038129	134460547	2	neutral	AA	31.6222	somatic	0	0.54405849513103	0.836488651687165
12	2105968	2252896	2	neutral	AA	45.9221	somatic	0	0.114326273676423	0.301138309100615
12	2252896	2255957	5	gain	AAAAA	21.0458	germline	1	0.0832772833522475	0.27005894905955
12	2255957	2283506	2	neutral	AA	11.1166	germline	1	0.296269934621244	0.673430840333786
12	33147569	33153691	1	loss	A	-1	germline	1	0.0143457375225465	0.0366910422676214
12	34678069	34690313	2	neutral	AA	1.53971	germline	1	0.00122620237331726	0.00445556930797553
12	34690313	34696435	1	loss	A	-1	germline	1	0.0143576192758501	0.0367865596749691
12	34696435	37592141	2	neutral	AA	32.0393	somatic	0	6.21333155837795e-19	2.77555756156289e-15
12	37592141	37595202	2	neutral	AA	-1	germline	1	NA	NA
12	37595202	37601324	1	loss	A	-1	germline	1	0.0144778729211957	0.0371491282619754
12	37601324	37616629	2	neutral	AA	13.9367	germline	1	0.0269468943139616	0.0902833421205659
12	37616629	37619690	2	neutral	AA	-1	germline	1	NA	NA
12	37619690	37625812	1	loss	A	-1	germline	1	0.0143253211941178	0.0366892556237998
12	37625812	37806411	2	neutral	AA	1.78671	somatic	0	3.6570747496999e-14	4.0911718457437e-13
12	53301193	53340986	2	neutral	AA	54.5678	somatic	0	0.559219264747784	0.686072796694395
12	58664065	59129337	2	neutral	AA	27.2936	somatic	0	0.303649987601067	0.535273908431772
12	59542572	59554816	1	loss	A	-1	germline	1	0.000537809769836474	0.00068568908097244
12	60127223	60130284	0	loss	-	-1	germline	1	0.0832667692350406	0.270040688403839
12	66301260	66439005	2	neutral	AA	72.6259	somatic	0	0.227254857491861	0.234131461302275
12	75986264	76004630	2	neutral	AA	100	germline	1	0.588072328727093	0.601556389962732
12	87905798	87927225	2	neutral	AA	54.5785	germline	1	0.372325643731596	0.532296255545326
12	90091352	90097474	1	loss	A	-1	germline	1	0.0143289989867193	0.0366888983041693
12	91676950	91716743	2	neutral	AA	100	somatic	0	0.949277307853529	0.995979357420479
12	95389943	95396065	2	neutral	AA	100	somatic	0	0.416567314046182	0.380772322951385
12	98004037	98019342	3	gain	AAB	7.85885	germline	1	0.000107755345150902	9.09514504416897e-05
12	121197234	121243149	2	neutral	AA	36.3786	somatic	0	0.214132261720081	0.460265999451703
12	126612143	126651936	2	neutral	AA	21.705	somatic	0	0.425527714289692	0.102799374808434
12	130658785	130713883	2	neutral	AA	22.7789	somatic	0	0.026264648705771	0.0276551846512479
13	22017773	22023895	1	loss	A	-1	germline	1	0.0143414622150276	0.0367378794660977
13	23058513	23064635	1	loss	A	-1	germline	1	0.0143778381782349	0.0368424682168073
13	24677782	24699209	2	neutral	AA	46.7796	somatic	0	0.950362962265408	0.968636948113252
13	26073598	26131757	2	neutral	AA	27.4921	germline	1	0.690680274032555	0.878213754059872
13	29309075	29318258	2	neutral	AA	70.3244	somatic	0	0.17709184566127	0.138170276404126
13	34004649	34010771	2	neutral	AA	100	somatic	0	0.49306455539675	0.771425843460666
13	37540104	37546226	2	neutral	AA	100	somatic	0	0.906313192065705	0.789431860030539
13	38476770	38482892	2	neutral	AA	100	somatic	0	0.113670197314303	0.218040192251227
13	38482892	38485953	0	loss	-	-1	germline	1	0.0832652673060823	0.270038079812314
13	41155145	41164328	2	neutral	AA	100	somatic	0	0.600637720987007	0.745793665078384
13	42697889	42719316	2	neutral	AA	100	somatic	0	0.821434934040273	0.611316500839673
13	48957634	48963756	1	loss	A	-1	germline	1	0.0143182052512416	0.0366581802035599
13	50494256	50503439	1	loss	A	-1	germline	1	0.014529261099476	0.0373022060235267
13	52670627	52673688	2	neutral	AA	100	somatic	0	0.434530576490833	0.668341768776084
13	52796128	52802250	2	neutral	AA	100	somatic	0	0.406261186820977	0.783047770328328
13	59585426	59609914	2	neutral	AA	100	somatic	0	0.07513171401398	0.286661321721143
13	63035173	63059661	3	gain	AAB	0.510304	germline	1	0.000204587832567959	2.35046468035627e-05
13	63059661	63068844	3	gain	AAB	0.392125	germline	1	0.00270172859831228	0.00496007644824537
13	70736649	70742771	2	neutral	AA	13.7102	somatic	0	0.73533236789356	0.710832401740111
13	74336385	74345568	2	neutral	AA	100	germline	1	0.78501308642788	0.684756436864689
13	77626960	78233038	2	neutral	AA	27.1839	germline	1	0.0136243609395568	0.0112696580199204
13	82591902	82598024	1	loss	A	-1	germline	1	0.0143259143301467	0.0366756796180199
13	89463847	89482213	2	neutral	AA	54.5678	germline	1	0.601778440625209	0.50802443763186
13	98600932	98607054	1	loss	A	-1	germline	1	0.0143343391999386	0.0366974748156571
13	109216480	109219541	1	loss	A	-1	germline	1	0.08328779854488	0.270077210616623
13	111542840	111548962	2	neutral	AA	21.2042	somatic	0	0.968273801281987	0.751537518841527
13	114153873	114156934	1	loss	A	-1	somatic	0	0.0833336272943699	0.2701567893493
13	114156934	114202849	2	neutral	AA	35.54	germline	1	0.00172397001444182	0.0042615768311437
13	114205910	114294679	2	neutral	AA	46.8751	germline	1	3.7646650649288e-09	4.84918584175986e-08
14	0	16091677	4	gain	AAAB	-1	somatic	0	NA	NA
14	16091677	16094738	4	gain	-	-1	somatic	0	0.0832802875832591	0.270064166555308
14	16094738	19749572	4	gain	AAAB	-1	somatic	0	0.000116951712263268	0.000115389314306547
14	19749572	19939354	4	gain	AAAB	1.10724	germline	1	5.59583701464226e-24	0
14	19939354	19957720	4	gain	AABB	1.45131	germline	1	0.000532474946793216	0.00067151370454821
14	21552501	21665758	2	neutral	AA	58.6292	somatic	0	1.35739085033112e-07	2.16863737682038e-05
14	22100420	22507533	1	loss	A	-1	somatic	0	1.00557203169127e-83	0
14	26597029	26603151	2	neutral	AA	100	somatic	0	0.0619422216600535	0.185960568254312
14	34347481	34350542	1	loss	A	-1	germline	1	0.0832765323082117	0.270057644697115
14	48529094	48682144	2	neutral	AA	57.5667	germline	1	0.137141797611129	0.4052201000166
14	55857128	55875494	2	neutral	AA	100	somatic	0	0.0552869319301698	0.109537218512875
14	68973513	69114319	2	neutral	AA	21.4128	somatic	0	0.604877460269666	0.850068989891481
14	76433170	76460719	2	neutral	AA	36.3789	somatic	0	0.723440676885357	0.602275983475452
14	79641098	79650281	1	loss	A	-1	germline	1	0.00281173340829446	0.00531656314878293
14	80510422	80519605	2	neutral	AA	100	somatic	0	0.0210184197236828	0.11490179144831
14	82031739	82037861	1	loss	A	-1	germline	1	0.0143068262280913	0.0366324800318737
14	82144996	82154179	2	neutral	AA	54.5679	somatic	0	0.441090482868475	0.34111030731028
14	87275232	87330330	2	neutral	AA	55.8592	somatic	0	0.705307959825828	0.98492681906861
14	99926345	99929406	5	gain	AAABB	7.08546	somatic	0	0.0832787854567794	0.270061557798231
15	17080380	17083441	19	gain	-	-1	germline	1	0.0832675202077494	0.270041992706491
15	20340345	20343406	12	gain	-	-1	germline	1	0.0832682711859448	0.270043297013749
15	20343406	20358711	5	gain	-	-1	germline	1	0.000107585287452657	9.0845200957701e-05
15	20646445	20667872	4	gain	-	-1	germline	1	2.21150960279277e-05	1.22988431965343e-05
15	22225921	22271836	3	gain	AAB	1.53358	germline	1	2.21854752990229e-05	1.23759866141882e-05
15	25758315	25761376	4	gain	AAAB	30.3351	germline	1	0.0832847940943863	0.270071992936907
15	39979721	40001148	2	neutral	AA	60.4657	somatic	0	0.789828645555631	0.640531871105058
15	47323060	47356731	2	neutral	AA	37.9574	somatic	0	0.981397689283549	0.657435894031992
15	60555763	60681264	2	neutral	AA	36.5653	somatic	0	0.18636626192247	0.550971557282009
15	61878115	62248496	2	neutral	AA	99.1821	somatic	0	0.817965999142823	0.872648382560314
15	63873887	63892253	2	neutral	AA	100	germline	1	0.449531125958928	0.765646421337435
15	68394984	68401106	1	loss	A	-1	somatic	0	0.0143735544335856	0.0367482550747494
15	69340833	69423480	2	neutral	AA	38.4636	somatic	0	0.340383595280991	0.539607345452786
15	71419252	71422313	1	loss	A	-1	germline	1	0.083271275153592	0.270048514288779
15	73874174	73880296	2	neutral	AA	54.5707	germline	1	0.510467478815809	0.564388832254624
15	76463780	76485207	2	neutral	AA	100	somatic	0	0.0230534860047246	0.0765875165237341
15	77036187	77042309	1	loss	A	-1	germline	1	0.0143849802549899	0.0367772488040397
15	100709961	100713022	4	gain	AAAB	100	germline	1	0.0832840429954808	0.270070688528477
16	844836	847897	3	gain	AAB	5.30446	germline	1	0.0832908030831697	0.270082428369902
16	6853579	6887250	2	neutral	AA	19.3987	somatic	0	0.284965358276538	0.588967687461866
16	8108589	8166748	2	neutral	AA	43.424	somatic	0	0.00208152804780866	0.0082097029968724
16	21558623	21583111	4	gain	AABB	3.05017	germline	1	9.64765332874145e-07	2.25333593006916e-07
16	22614668	22645278	4	gain	AABB	8.16175	germline	1	4.32968588520136e-08	4.13376721741798e-09
16	22645278	22700376	4	gain	AABB	1.62377	germline	1	4.27569575076242e-12	2.54241072639161e-14
16	34062808	34065869	25	gain	AAAAAAAAAAAAAAAABBBBBBBBB	28.9546	germline	1	0.0832675202077494	0.270041992706491
16	34068930	34071991	4	gain	AAAB	100	germline	1	0.0832847940943863	0.270071992936907
16	34084235	34087296	15	gain	AAAAAAAAAABBBBB	65.5516	germline	1	0.0832675202077494	0.270041992706491
16	34087296	34096479	2	neutral	AA	10.7924	germline	1	0.0518607906369506	0.102491225727655
16	34096479	34099540	11	gain	AAAAAAABBBB	7.31099	germline	1	0.0832682711859448	0.270043297013749
16	34099540	34160760	2	neutral	AA	2.20522	germline	1	0.653141464385479	0.246278137535395
16	34160760	34212797	3	gain	AAB	0.439256	germline	1	0.00021125429774832	0.000699154691139681
16	34751533	34763777	3	gain	-	-1	germline	1	0.000532809011755642	0.000672010993639116
16	34763777	34959681	3	gain	AAA	0.889348	somatic	0	7.71749764026706e-08	3.12247808276211e-07
16	35982055	36089190	2	neutral	AA	1.70181	germline	1	4.35578076325068e-11	1.29431687589943e-10
16	36122861	36125922	5	gain	-	-1	germline	1	0.0832772833522475	0.27005894905955
16	55765298	55786725	1	loss	A	-1	germline	1	0.00271274342787598	0.00497800685239913
16	70148937	70161181	4	gain	AAAB	4.92638	germline	1	0.000532403983137112	0.000671291344823577
16	78337112	78349356	1	loss	A	-1	germline	1	0.000532951048493691	0.000672626539309773
17	1481524	1490707	2	neutral	AA	54.5681	somatic	0	0.0261396342029425	0.0435711659330116
17	4199692	4202753	2	neutral	AA	100	somatic	0	0.674007567308402	0.834729348246696
17	4931271	4934332	2	neutral	AA	100	somatic	0	0.309539887060766	0.555001339698484
17	5035345	5038406	2	neutral	AA	100	somatic	0	0.209133369415915	0.446438119179536
17	5647545	5656728	2	neutral	AA	100	somatic	0	0.434436488971031	0.622132275271185
17	7178045	7184167	2	neutral	AA	100	somatic	0	0.281395206432868	0.728940371645894
17	7269875	7275997	2	neutral	AA	54.5777	somatic	0	0.327228994774136	0.547089172190546
17	8726911	8745277	2	neutral	AA	77.1492	somatic	0	0.350631141838071	0.34395196541886
17	21289255	21304560	4	gain	AABB	0.206584	germline	1	0.000107622778396926	9.08850306886588e-05
17	21855540	21858601	5	gain	-	-1	germline	1	0.0832735281869372	0.270052427293323
17	21886150	21968797	0	loss	-	-1	germline	1	2.29927480726627e-19	0
17	21977980	21990224	9	gain	-	-1	germline	1	0.00270017381205503	0.00495797514706731
17	22124908	22158579	6	gain	AAAABB	0.554411	germline	1	9.22811955347133e-09	5.58656343407904e-10
17	26661310	26673554	3	gain	-	-1	germline	1	0.000532921802751942	0.000672207386986146
17	26783750	26805177	3	gain	-	-1	germline	1	5.03385477972636e-06	2.44467303334162e-06
17	26808238	26826604	4	gain	-	-1	germline	1	0.00010764694575921	9.09492357071828e-05
17	26826604	26878641	3	gain	-	-1	germline	1	5.91278512788628e-12	2.09388062444305e-13
17	26936800	26939861	15	gain	AAAAAAAAAABBBBB	4.97151	germline	1	0.0832675202077494	0.270041992706491
17	39728719	39753207	2	neutral	AA	36.3786	somatic	0	0.780348820143935	0.730550666618053
17	42936647	42958074	2	neutral	AA	100	somatic	0	0.782104334291301	0.958038471521667
17	43218259	43334577	2	neutral	AA	100	somatic	0	0.335285096653994	0.589723564956578
17	44592648	44611014	2	neutral	AA	100	somatic	0	0.63109843875293	0.785054766578543
17	45201787	45210970	2	neutral	AA	62.7694	somatic	0	0.133124942497388	0.330940535744192
17	50120814	50133058	2	neutral	AA	27.2928	somatic	0	0.771053339435013	0.386729914420395
17	50576903	50592208	2	neutral	AA	54.5678	somatic	0	0.413823012687409	0.463774126560336
17	50699343	50702404	2	neutral	AA	100	somatic	0	0.247026830813915	0.489688808794897
17	54629667	54672521	2	neutral	AA	100	germline	1	0.619782066433617	0.861932326806444
17	56218326	56221387	2	neutral	AA	100	somatic	0	0.154683410151016	0.377955739581303
17	56414230	56496877	2	neutral	AA	31.1397	somatic	0	0.185116958993833	0.349290962991395
17	57271310	57274371	2	neutral	AA	100	somatic	0	0.434693032101552	0.668551069124569
17	59815001	59824184	2	neutral	AA	36.3786	somatic	0	0.69211023076629	0.534247465382981
17	60359859	60375164	2	neutral	AA	54.5678	somatic	0	0.152208816512158	0.424839405135552
17	61489368	61507734	2	neutral	AA	36.3806	somatic	0	0.730312263292024	0.788855006270083
17	64455477	64492209	2	neutral	AA	100	somatic	0	0.106116693157963	0.233292655980246
17	64685052	64709540	2	neutral	AA	27.7575	somatic	0	0.286084946111526	0.662412131477113
17	67449135	67461379	2	neutral	AA	100	somatic	0	0.551612234790263	0.549635152666616
17	69163295	69169417	2	neutral	AA	100	somatic	0	0.786106350774211	0.574427236074809
17	69368382	69408175	2	neutral	AA	36.3846	somatic	0	0.0168386298818973	0.0212784786170027
17	70151998	70207096	2	neutral	AA	37.3011	somatic	0	0.779976530998477	0.978737558621939
17	75756689	75768933	2	neutral	AA	100	somatic	0	0.21823223086996	0.232866998624635
17	76059728	76096460	2	neutral	AA	11.1222	somatic	0	0.982542796891427	0.99688145100259
17	76619891	76622952	2	neutral	AA	100	somatic	0	0.191261693559023	0.424888715361444
17	76812734	76883137	2	neutral	AA	100	somatic	0	0.47913202404355	0.596850824008837
17	79500292	79521719	2	neutral	AA	29.0698	germline	1	0.0178589599784586	0.0139642585160968
17	82585780	82588841	4	gain	AABB	20.5002	germline	1	0.0832847940943863	0.270071992936907
18	5304713	5310835	1	loss	A	-1	germline	1	0.014447427744623	0.0369652971012521
18	40680690	40686812	1	loss	A	-1	germline	1	0.0143254398195906	0.0366696075648034
18	41283707	41289829	1	loss	A	-1	germline	1	0.0143119220955016	0.0366449712011856
18	41347988	41351049	1	loss	A	-1	germline	1	0.0833118373096241	0.270118954703176
18	47457744	47586306	2	neutral	AA	29.9212	somatic	0	0.510081657885257	0.149376173255182
18	50166729	50172851	1	loss	A	-1	somatic	0	0.0147716721566117	0.0379513182951783
18	50846271	50858515	2	neutral	AA	100	germline	1	0.753935482078658	0.863205858334472
18	51152371	51179920	2	neutral	AA	86.8735	somatic	0	0.206172150231609	0.220653685902402
18	51883950	51899255	2	neutral	AA	54.5678	somatic	0	0.26980085808236	0.294144475515237
18	53539951	53570561	2	neutral	AA	54.5681	somatic	0	0.0073296501342447	0.012420433404044
18	55710200	55740810	2	neutral	AA	100	somatic	0	0.803691342303119	0.91847494753794
18	56261180	56264241	1	loss	A	-1	somatic	0	0.0833719588100658	0.270223335522674
18	56689720	56695842	2	neutral	AA	54.5686	somatic	0	0.12430166393538	0.268270664161584
18	57277432	57283554	1	loss	A	-1	germline	1	0.0144221695179827	0.0368891154330088
18	58657943	58682431	2	neutral	AA	54.5679	somatic	0	0.893821107621775	0.927438511097575
18	61321013	61330196	2	neutral	AA	100	somatic	0	0.287005648870326	0.617565458036631
18	62505620	62508681	2	neutral	AA	100	somatic	0	0.115378412996708	0.321994594641298
18	64544246	64547307	1	loss	A	-1	somatic	0	0.083351663876087	0.270188103705505
18	67060388	67075693	2	neutral	AA	100	somatic	0	0.0541895635493636	0.0969536369764601
18	68391923	68394984	2	neutral	AA	100	somatic	0	0.80091500525777	0.898146526888206
18	69077587	69089831	1	loss	A	-1	germline	1	0.000539730122099485	0.000691757451746655
18	73246669	73258913	2	neutral	AA	36.3786	somatic	0	0.405836559062435	0.442244510450832
18	73944577	73947638	2	neutral	AA	100	somatic	0	0.608194302523804	0.795168018031004
18	74360873	74366995	1	loss	A	16.7091	somatic	0	0.0164930283508382	0.0430250937876382
18	74614936	74617997	3	gain	-	-1	germline	1	0.0832930565445039	0.270086341733154
18	77409629	77412690	2	neutral	AA	100	somatic	0	0.597519724641849	0.788306975305637
18	80247176	80259420	2	neutral	AA	29.1467	somatic	0	0.0578445624109679	0.162010940961232
19	6069963	6140366	2	neutral	AA	8.97567	somatic	0	0.0577588438105416	0.232180242736673
19	7447413	7450474	3	gain	AAB	7.63765	germline	1	0.0832990660161773	0.27009677757084
19	7450474	7453535	9	gain	AAAAAABBB	31.0646	germline	1	0.0832690221696267	0.270044601325607
19	8879961	8919754	2	neutral	AA	0.981795	germline	1	0.927919611173103	0.671843086285865
19	12583771	12586832	0	loss	-	-1	germline	1	0.0832652673060823	0.270038079812314
19	12586832	12589893	1	loss	A	-1	germline	1	0.0833742140497809	0.270227250375986
19	13740829	13746951	2	neutral	AA	50.4481	somatic	0	0.904003396963688	0.972242944056474
19	14934619	14940741	1	loss	A	-1	germline	1	0.0143920063482518	0.0368891154330088
19	17254857	17331382	2	neutral	AA	85.7672	germline	1	0.0500157039768967	0.122436095526502
19	17331382	17340565	3	gain	AAA	70.7394	germline	1	0.00271326380269722	0.00498186200067086
19	17542591	17551774	2	neutral	AA	43.4639	somatic	0	0.232731409695328	0.647764590382176
19	19213897	19394496	2	neutral	AA	32.8623	somatic	0	0.00017450356223374	0.00675035809750291
19	19685291	19697535	1	loss	A	-1	somatic	0	0.000763291739854228	0.0012061584962183
19	22421825	22431008	2	neutral	AA	54.5678	somatic	0	0.99084143163608	0.97476770676865
19	24328828	24353316	3	gain	AAB	0.812847	germline	1	9.66084023683366e-07	2.25975399170686e-07
19	24353316	24405353	4	gain	AABB	0.702978	germline	1	1.97554828649519e-11	1.87627691161651e-13
19	24414536	24420658	3	gain	AAB	4.86852	somatic	0	0.0143182052512416	0.0366585372614299
19	27337791	27340852	5	gain	AAABB	3.32078	germline	1	0.0832772833522475	0.27005894905955
19	27343913	27346974	4	gain	AAAB	6.02907	germline	1	0.0832847940943863	0.270071992936907
19	27346974	27368401	7	gain	AAAAABB	0.786264	germline	1	4.59547893195523e-06	1.66376634158638e-06
19	27368401	27380645	6	gain	AAAABB	0.567335	germline	1	0.00270051924943922	0.00495840983207319
19	27380645	27383706	4	gain	AAAB	4.52957	germline	1	0.0832817897316867	0.27006677533078
19	27383706	27399011	6	gain	AAAABB	0.252514	germline	1	0.00010755946752669	9.08319280660264e-05
19	29511101	29514162	1	loss	A	-1	somatic	0	0.0832885496712215	0.270078515048046
19	29964129	30052898	2	neutral	AA	100	somatic	0	0.837833567164736	0.886126672493521
19	35372916	35412709	2	neutral	AA	54.5678	somatic	0	0.60625512659029	0.700277109192741
19	37849265	37855387	1	loss	A	-1	somatic	0	0.0143927210357361	0.0368406751240256
19	38945103	38957347	2	neutral	AA	54.5693	somatic	0	0.410640220891802	0.661742594276721
19	44666112	44669173	1	loss	A	-1	somatic	0	0.0832990660161773	0.270096777570848
19	46285381	46291503	2	neutral	AA	54.5683	somatic	0	0.822289669694413	0.970999903808861
19	53754221	53763404	1	loss	A	-1	germline	1	0.00274152174686643	0.00507780153596615
19	56089764	56123435	2	neutral	AA	35.4422	somatic	0	0.0937754697648407	0.170947617014394
19	57733521	57745765	2	neutral	AA	100	somatic	0	0.954700716954728	0.968073993114035
20	64281	67342	8	gain	-	-1	germline	1	0.0832705241534503	0.270047209963117
20	1582537	1603964	1	loss	A	-1	germline	1	4.61993380497798e-06	1.67463470179818e-06
20	3954812	3960934	2	neutral	AA	36.3915	somatic	0	0.0659737047924845	0.0945947786718792
20	5675094	5684277	2	neutral	AA	54.5678	somatic	0	0.0814047304426146	0.27149236523363
20	8748338	8788131	2	neutral	AA	52.7803	somatic	0	0.238774804494288	0.077379595235942
20	10107422	10110483	2	neutral	AA	100	somatic	0	0.273881482855114	0.518638112314089
20	11864436	11870558	2	neutral	AA	54.5678	somatic	0	0.627068499874007	0.726402988724552
20	15458050	15494782	2	neutral	AA	36.3808	somatic	0	0.41323052918575	0.394562490756549
20	15871285	15904956	2	neutral	AA	55.142	somatic	0	0.125429084872392	0.194517192548667
20	19660803	19725084	2	neutral	AA	36.3789	somatic	0	0.0960126545596883	0.220066571001703
20	25856267	28764217	2	neutral	AA	1.39352	somatic	0	9.70506993232041e-05	8.98573364205291e-06
20	28773400	28788705	5	gain	-	-1	germline	1	0.00270058402344418	0.00495862718767637
20	28794827	28804010	3	gain	-	-1	germline	1	0.0169687604222901	0.044708964775965
20	28804010	28822376	9	gain	-	-1	germline	1	2.2097619249614e-05	1.22920163322382e-05
20	29263160	29266221	11	gain	-	-1	germline	1	0.0832682711859448	0.270043297013749
20	29266221	29860055	3	gain	-	-1	germline	1	4.08800541881654e-18	0
20	29890665	29893726	7	gain	-	-1	germline	1	0.0832720261592204	0.270049818619023
20	30977320	31001808	3	gain	-	-1	somatic	0	0.000539263164356809	0.000691851617190875
20	31066089	31075272	30	gain	-	-1	germline	1	0.0143065892499609	0.0366321231960666
20	31164041	31167102	5	gain	-	-1	germline	1	0.0832757812696629	0.270056340339263
20	31167102	31182407	3	gain	-	-1	germline	1	0.000136336529692107	0.000187508138456027
20	31182407	31188529	15	gain	-	-1	germline	1	0.0143069447184551	0.0366328368707176
20	31188529	31191590	5	gain	-	-1	germline	1	0.0832787854567794	0.270061557798231
20	31191590	31240566	3	gain	AAA	4.76437	somatic	0	2.27498685936597e-05	1.33281513985395e-05
20	31240566	31243627	54	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBB	100	germline	1	0.0832667692350406	0.27004068840383
20	31243627	31246688	2	neutral	AA	7.52025	somatic	0	0.0840431834758591	0.271386557745088
20	33511828	33517950	2	neutral	AA	54.5678	somatic	0	0.318453628506899	0.660435951172848
20	35697382	35727992	2	neutral	AA	54.5678	somatic	0	0.145154600926861	0.0930335356900119
20	35957567	36012665	2	neutral	AA	100	somatic	0	0.964700598484718	0.918820291900557
20	52138013	52162501	2	neutral	AA	67.1984	somatic	0	0.947448349615272	0.780853929478088
21	8990157	8996279	8	gain	AAAAABBB	12.8419	germline	1	0.0143077741752404	0.0366339074055035
21	10655341	10661463	8	gain	AAAAABBB	10.4548	germline	1	0.0143078926725297	0.0366342642565148
21	10661463	10692073	5	gain	AAAAA	3.92748	somatic	0	2.03720157573533e-07	3.04926894845181e-08
21	10692073	10695134	51	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBBBBB	100	germline	1	0.0832667692350406	0.27004068840383
21	10695134	10704317	5	gain	AAAAA	1.86546	germline	1	0.00270090791476464	0.00495891700873341
21	10704317	10707378	9	gain	AAAAAABBB	3.0798	germline	1	0.0832690221696267	0.270044601325607
21	10707378	10713500	5	gain	AAAAB	19.3466	germline	1	0.0143097887468994	0.0366371191740963
21	10713500	10722683	6	gain	AAAABB	1.02163	germline	1	0.00270047606755795	0.00495833738214635
21	10722683	10731866	5	gain	AAAAA	1.15076	germline	1	0.00270090791476464	0.00495877209626394
21	10731866	10734927	6	gain	AAAABB	23.5792	germline	1	0.0832720261592204	0.270049818619023
21	10734927	10737988	5	gain	AAAAA	2.29636	germline	1	0.0832772833522475	0.27005894905955
21	10753293	10756354	12	gain	AAAAAAAABBBB	4.19164	germline	1	0.0832682711859448	0.270043297013749
21	15739662	15843736	2	neutral	AA	100	somatic	0	0.0779973937231771	0.230648550282181
21	16621230	16630413	2	neutral	AA	46.6841	somatic	0	0.163473671693341	0.0932493649997774
21	18757808	18782296	2	neutral	AA	100	somatic	0	0.42235008605683	0.287016164464791
21	18880248	18944529	2	neutral	AA	96.1047	somatic	0	0.417437897585892	0.682287246781129
21	20585225	20588286	1	loss	A	-1	somatic	0	0.0833170965385064	0.27012808684985
21	23027903	23030964	1	loss	A	-1	somatic	0	0.0848689092822586	0.272812202427098
21	27766331	27815307	2	neutral	AA	27.4215	somatic	0	0.567361242490612	0.344866998271844
21	28439751	28470361	2	neutral	AA	100	germline	1	0.394802274627588	0.602506938944317
21	31782363	31785424	3	gain	AAB	15.4882	somatic	0	0.0833043245919923	0.270105909170251
21	39970538	39998087	2	neutral	AA	100	somatic	0	0.693913895954087	0.44234980597906
21	41473489	41476550	1	loss	A	-1	germline	1	0.083326864391343	0.27014504714867
21	41804077	41807138	3	gain	AAA	6.47751	germline	1	0.0832893008030503	0.27007981948406
21	42955013	42967257	2	neutral	AA	9.94961	somatic	0	0.0106851791182668	0.0195154439525382
21	43334577	43337638	3	gain	AAB	17.1545	somatic	0	0.0832938077092568	0.270087646196769
21	45437484	45538497	2	neutral	AA	7.20969	somatic	0	0.73540221701454	0.720144948382394
21	45795621	45798682	3	gain	AAB	2.90705	germline	1	0.0832847940943863	0.270071992936907
22	10725744	10731866	10	gain	-	-1	germline	1	0.0143070632096845	0.0366328368707176
22	11619556	11628739	4	gain	AABB	13.4271	germline	1	0.0143119220955016	0.0366414019154557
22	17876240	17879301	3	gain	AAA	12.1527	germline	1	0.0832975636153337	0.270094168583826
22	18730259	18733320	9	gain	AAAAAABBB	10.1117	germline	1	0.0832690221696267	0.270044601325607
22	19042481	19112884	2	neutral	AA	41.4142	somatic	0	0.986973528316324	0.995519111655262
22	19541424	19544485	2	neutral	AA	100	somatic	0	0.367638431262647	0.610305914422371
22	21601477	21616782	2	neutral	AA	54.5678	somatic	0	0.490167385914364	0.386158386532868
22	22348361	22372849	2	neutral	AA	2.90685	germline	1	0.350133981654565	0.630094797176579
22	22715681	22764657	2	neutral	AA	54.5678	somatic	0	0.248284001937522	0.188256825810474
22	29070317	29119293	2	neutral	AA	100	somatic	0	0.928241701750881	0.999886025272808
22	29119293	29122354	3	gain	AAB	14.0263	germline	1	0.0832908030831697	0.270082428369902
22	32112951	32131317	2	neutral	AA	54.5678	somatic	0	0.589575940987514	0.621798690808044
22	32691480	32694541	2	neutral	AA	100	germline	1	0.105284009783392	0.306401761739179
22	34087296	34090357	2	neutral	AA	100	somatic	0	0.0950858233902993	0.289996505210793
22	34466860	34469921	1	loss	A	-1	somatic	0	0.0832885496712215	0.270078515048046
22	35235171	35238232	2	neutral	AA	100	somatic	0	0.356092912848133	0.599699226054248
22	35247415	35250476	1	loss	A	-1	somatic	0	0.0836866653976557	0.270769204030478
22	35593308	35599430	2	neutral	AA	100	somatic	0	0.0269504376517834	0.0680713720210746
22	35942262	35988177	2	neutral	AA	54.5873	somatic	0	0.176835049622299	0.302522829406643
22	36676902	36738122	2	neutral	AA	35.2465	somatic	0	0.732939053969762	0.905520984255856
22	38862456	38966530	2	neutral	AA	76.549	somatic	0	0.559550529295324	0.624366467115082
22	41647966	41651027	1	loss	A	100	somatic	0	0.085572123988145	0.274021753375917
22	42321386	42333630	2	neutral	AA	12.3449	germline	1	0.00447104296793559	0.0222390733791011
22	43132551	43135612	2	neutral	AA	100	somatic	0	0.513096537831276	0.72979308915751
22	45229336	45232397	2	neutral	AA	100	somatic	0	0.555509111874304	0.760145291607467
22	45327288	45330349	3	gain	AAB	17.409	germline	1	0.0832923053852384	0.270085037274138
22	46300686	46319052	2	neutral	AA	27.2839	somatic	0	0.464308462438204	0.637228203737601
22	46634335	46683311	2	neutral	AA	3.06368	germline	1	0.0811924708406898	0.0945091162332392
22	46821056	46827178	2	neutral	AA	100	somatic	0	0.352428695872989	0.374645651059956
22	48440325	48455630	2	neutral	AA	54.5678	somatic	0	0.697455232087658	0.839671139345809
22	48734181	48752547	2	neutral	AA	37.6861	somatic	0	0.235305009404163	0.29427821834534
22	50041228	50050411	2	neutral	AA	15.73	germline	1	0.771062803720455	0.568557250112667
22	50283047	50405487	2	neutral	AA	100	somatic	0	0.00736891148147735	0.0206087509445403
22	50641184	50644245	4	gain	AAAA	30.9225	germline	1	0.0832817897316867	0.27006677533078
X	3220172	3232416	2	neutral	AA	100	somatic	0	0.033496788408567	0.0187798630824162
X	4086435	4107862	2	neutral	AA	100	somatic	0	0.600724808482035	0.681588333240507
X	7126008	7144374	2	neutral	AA	100	somatic	0	0.815174895048646	0.981108330395888
X	10012531	10018653	2	neutral	AA	100	somatic	0	0.0296111416290225	0.0668172213073928
X	13802049	13835720	2	neutral	AA	100	somatic	0	0.669983868320209	0.923275109986278
X	16749792	16765097	2	neutral	AA	54.5678	somatic	0	0.17747133351306	0.401189170534029
X	20325040	20358711	2	neutral	AA	54.5678	somatic	0	0.848269308206686	0.530627640607183
X	30711013	30864063	2	neutral	AA	6.30904	somatic	0	0.341104555733399	0.601499807085211
X	33095532	33113898	2	neutral	AA	100	somatic	0	0.122086873144243	0.177739039347599
X	38195158	38201280	2	neutral	AA	100	somatic	0	0.576397781090956	0.784870371726098
X	40616409	40622531	2	neutral	AA	100	somatic	0	0.0219811753160036	0.0525698911390456
X	55199013	55293904	2	neutral	AA	100	somatic	0	0.069841207686371	0.153138099299002
X	58489588	58498771	1	loss	A	-1	germline	1	0.0143731975056834	0.0367357331084504
X	62582145	62664792	2	neutral	AA	2.25586	germline	1	5.48078612995062e-12	1.26655130827658e-10
X	63252504	63286175	3	gain	AAB	45.5257	germline	1	4.60698815273692e-06	1.66796902434374e-06
X	66083929	66114539	2	neutral	AA	100	somatic	0	0.146369482907582	0.192022998125418
X	67902163	67911346	1	loss	A	-1	germline	1	0.00279873421428714	0.00523108658776994
X	70292804	70375451	2	neutral	AA	16.257	somatic	0	0.100876038897404	0.101473430504333
X	70908065	70914187	2	neutral	AA	65.7877	somatic	0	0.071213884539747	0.212922786636935
X	79665586	79671708	1	loss	A	-1	germline	1	0.0143829563489539	0.0367600649200861
X	86500799	86506921	2	neutral	AA	54.5678	somatic	0	0.361442012834365	0.306362950532551
X	87461953	87468075	2	neutral	AA	52.8038	somatic	0	0.297151161514858	0.325080257124752
X	104003597	104049512	3	gain	AAB	100	germline	1	9.25395345630384e-09	5.60274826533202e-10
X	108772635	108775696	1	loss	A	-1	germline	1	0.0832697731587952	0.270045905642071
X	109553190	109596044	2	neutral	AA	100	germline	1	0.0154009117437629	0.0201033512905348
X	109957242	110162329	2	neutral	AA	100	somatic	0	0.0564202696572002	0.0537681440808701
X	114860964	114894635	2	neutral	AA	100	somatic	0	0.314108257311946	0.644752763259106
X	115402761	115405822	1	loss	A	-1	germline	1	0.0832757812696629	0.270056340339271
X	119740198	119743259	0	loss	-	-1	germline	1	0.0832652673060823	0.270038079812314
X	119926919	119936102	2	neutral	AA	100	somatic	0	0.571153452059634	0.862737122942202
X	125271425	125274486	1	loss	A	-1	germline	1	0.0832727771703354	0.270051122953882
X	126979463	127135574	2	neutral	AA	54.5678	somatic	0	0.0123705975698725	0.0470549722270625
X	139284683	139296927	2	neutral	AA	100	somatic	0	0.00548557128098141	0.0215545993359272
X	141705934	141742666	3	gain	AAB	5.47627	germline	1	1.99186760501786e-09	7.73108244089826e-11
X	141788581	141791642	0	loss	-	-1	germline	1	0.0832652673060823	0.270038079812314
X	143493558	143514985	2	neutral	AA	100	germline	1	0.015750133437613	0.121167292045934
X	146575985	146612717	2	neutral	AA	100	somatic	0	0.174079106859149	0.337069993178372
X	147243283	147301442	2	neutral	AA	20.1383	somatic	0	0.159689860091975	0.0387436038828738
X	150622627	150677725	2	neutral	AA	65.1442	somatic	0	0.0107053064356251	0.00406947561690274
X	154461121	154476426	2	neutral	AA	100	somatic	0	0.415192146553708	0.277047646034463
X	155560020	155563081	0	loss	-	-1	germline	1	0.0832652673060823	0.270038079812314
