chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	5667662	5674218	3	gain	AAB	0.636889	germline	1	0.0143127075950669	0.0366471834851458
1	16721078	16724356	4	gain	AAAB	100	germline	1	0.0832738506342817	0.270052902587358
1	30950876	30977100	2	neutral	AA	100	somatic	0	0.359281871564152	0.561206076415717
1	31429464	31432742	11	gain	AAAAAAAABBB	20.0946	germline	1	0.0832653648737266	0.270038164553525
1	31449132	31475356	2	neutral	AA	56.514	somatic	0	0.910460903886376	0.955736691877406
1	36687376	36815218	2	neutral	AA	17.4482	somatic	0	0.455092839308921	0.580138155664757
1	39024590	39037702	2	neutral	AA	54.5678	somatic	0	0.227548039297958	0.379127948547886
1	39480232	39506456	2	neutral	AA	14.0299	somatic	0	0.44660814275043	0.766341248860632
1	40073550	40093218	2	neutral	AA	100	somatic	0	0.323381827744916	0.604022423271232
1	53592022	53716586	2	neutral	AA	56.1494	somatic	0	0.0187814651274804	0.059822140046787
1	55663718	55666996	0	loss	-	-1	germline	1	0.0832696076664402	0.270045533497055
1	64202908	64242244	2	neutral	AA	27.2899	somatic	0	0.937503502214621	0.831059000707824
1	72299568	72348738	1	loss	A	-1	germline	1	2.0213234929764e-11	2.02726724296554e-13
1	76833042	76993664	2	neutral	AA	100	somatic	0	0.0519563026655338	0.118640193689159
1	89007534	89014090	1	loss	A	-1	germline	1	0.014722268999535	0.0378785775854574
1	91380806	91387362	2	neutral	AA	100	somatic	0	0.0287119029049896	0.0822905060587401
1	93750800	93780302	2	neutral	AA	36.3794	somatic	0	0.494960200964111	0.479501469140901
1	97569670	97664732	2	neutral	AA	100	somatic	0	0.217943844038061	0.116050598001524
1	103611024	103617580	3	gain	AAB	38.6632	germline	1	0.0143160563232843	0.0366496036378492
1	104260068	104269902	2	neutral	AA	27.3072	somatic	0	0.495624212566707	0.726997341390938
1	105069734	105115626	2	neutral	AA	20.4366	somatic	0	0.556420761632855	0.664926550761463
1	105472928	105482762	1	loss	A	-1	germline	1	0.0143223538034148	0.0366774454461702
1	109642544	109649100	1	loss	A	-1	germline	1	0.0143393826226676	0.0367279306340536
1	118214514	118230904	2	neutral	AA	100	somatic	0	0.472760513410575	0.629971283382113
1	125068812	125075368	3	gain	-	-1	germline	1	0.0143106986898225	0.0366403271451384
1	125081924	125085202	6	gain	-	-1	germline	1	0.0832687590938874	0.270044059696601
1	125150762	125157318	4	gain	-	-1	germline	1	0.0143088239360073	0.0366354880514727
1	125157318	125163874	3	gain	-	-1	germline	1	0.0222124143446187	0.0612378960407113
1	125163874	125167152	7	gain	-	-1	germline	1	0.0832687590938874	0.270044059696601
1	143543620	143750134	1	loss	A	-1	germline	1	1.5681678817799e-30	0
1	150171736	150378250	2	neutral	AA	100	somatic	0	0.00517588725600785	0.0341768849150534
1	152581066	152613846	1	loss	A	-1	germline	1	4.39206716544237e-08	4.30018254338194e-09
1	160985858	161061252	2	neutral	AA	47.116	germline	1	0.00285490555371866	0.0151460276045146
1	174763292	174855076	2	neutral	AA	100	germline	1	0.116465467910179	0.448822932715261
1	189786366	189835536	2	neutral	AA	52.9808	somatic	0	0.136177249716867	0.34889747600097
1	193969094	194028098	2	neutral	AA	100	somatic	0	0.0429307022977316	0.0469662250309302
1	209903452	209913286	1	loss	A	-1	germline	1	0.00277798396160221	0.00519002560207027
1	224011964	224015242	8	gain	AAAAAAAA	1.71039	germline	1	0.083267061969797	0.27004111211332
1	228066850	228073406	1	loss	A	-1	somatic	0	0.0143635485501711	0.0367861649196995
1	229676348	229686182	1	loss	A	-1	germline	1	0.0027207115680495	0.00500787106553702
1	234776916	234783472	7	gain	AAAAABB	10.6843	germline	1	0.0143072171766049	0.0366330687143365
1	235360400	235393180	2	neutral	AA	36.4069	somatic	0	0.917082932169853	0.885716769325513
1	236094672	236097950	5	gain	AAABB	44.7403	germline	1	0.0832704562459981	0.270047007303368
1	245859834	245876224	2	neutral	AA	100	somatic	0	0.851438814836287	0.799982590064254
1	248587130	248629744	1	loss	A	-1	germline	1	4.30363474669131e-10	1.03992370270589e-11
2	908006	911284	3	gain	-	-1	germline	1	0.0832772451346501	0.270058797965291
2	3179660	3182938	7	gain	-	-1	germline	1	0.0832687590938874	0.270044059696601
2	18291240	18297796	1	loss	A	-1	somatic	0	0.0172222946213221	0.0455292825086282
2	89774586	89790976	5	gain	-	-1	germline	1	0.000532158696439993	0.000671102514966271
2	89790976	89797532	3	gain	-	-1	germline	1	0.0147729440880881	0.0380362141383461
2	89797532	89823756	4	gain	-	-1	germline	1	4.59582277198054e-06	1.664050784278e-06
2	89823756	89827034	9	gain	-	-1	germline	1	0.0832653648737266	0.270038164553525
2	89827034	89843424	27	gain	-	-1	germline	1	0.000107518700144619	9.080610618728e-05
2	89843424	89849980	4	gain	-	-1	germline	1	0.0143088239360073	0.0366354880514727
2	91410308	91413586	4	gain	-	-1	germline	1	0.0832738506342817	0.270052902587358
2	106262926	106269482	1	loss	A	-1	somatic	0	0.0143409925680444	0.0366939978925308
2	109196736	109200014	12	gain	-	-1	germline	1	0.0832653648737266	0.270038164553525
2	110094908	110226028	3	gain	-	-1	germline	1	1.23619791612343e-24	0
2	125685076	125694910	0	loss	-	-1	germline	1	0.0143098951973714	0.0366375042725425
2	132241076	132247632	3	gain	-	-1	somatic	0	0.0143143148983676	0.0366471834851458
2	176399014	176408848	1	loss	A	-1	germline	1	0.0143431394098953	0.036703690161647
2	219186748	219193304	1	loss	A	-1	germline	1	0.0143171280622717	0.0366588821853453
2	239084208	239087486	2	neutral	AA	100	germline	1	0.192821803458997	0.426802130363967
2	239123544	239126822	2	neutral	AA	66.046	somatic	0	0.907813542777635	0.938495529578944
2	239267776	239271054	2	neutral	AA	100	somatic	0	0.724424069471499	0.861945021301803
2	239346448	239349726	2	neutral	AA	100	somatic	0	0.569141663012511	0.769534402266466
2	239474290	239477568	2	neutral	AA	43.1948	somatic	0	0.326079401312772	0.571303465150026
2	239644746	239648024	3	gain	AAB	52.1455	somatic	0	0.0833111963035465	0.270117756911578
2	239729974	239736530	2	neutral	AA	81.8907	somatic	0	0.442531586672989	0.50351093464069
2	240470802	240477358	2	neutral	AA	100	somatic	0	0.857850588118286	0.775061132948895
2	241516484	241519762	2	neutral	AA	29.2006	somatic	0	0.204566311962242	0.441013514856703
2	241572210	241582044	2	neutral	AA	21.0539	germline	1	0.677523315298737	0.915513940101283
2	241588600	241598434	2	neutral	AA	5.15298	germline	1	0.448983437134358	0.693089809852797
3	4333516	4343350	2	neutral	AA	100	somatic	0	0.444784496838807	0.84088484101012
3	11990924	12004036	2	neutral	AA	100	somatic	0	0.228038677872446	0.109439034420217
3	32058840	32068674	1	loss	A	-1	somatic	0	0.00382048643606757	0.00914171638170092
3	34992650	35022152	2	neutral	AA	36.3786	germline	1	0.898373108043888	0.949804645769178
3	43197484	43344994	2	neutral	AA	52.1415	somatic	0	0.736690899048605	0.976627005162227
3	45990340	46069012	2	neutral	AA	100	somatic	0	0.0213653739021479	0.0186824021931117
3	49982944	50032114	2	neutral	AA	21.8329	germline	1	0.0123557636747569	0.0526285946603801
3	53978826	53995216	2	neutral	AA	100	somatic	0	0.396525170836016	0.668510244712127
3	67939828	67969330	2	neutral	AA	100	somatic	0	0.425010735963195	0.496671275502144
3	68690490	68697046	1	loss	A	-1	germline	1	0.0143298603741756	0.0366697770156632
3	75669352	75672630	6	gain	AAAABB	3.40716	germline	1	0.0832687590938874	0.270044059696601
3	75708688	75780804	2	neutral	AA	0.513885	germline	1	3.84158996699895e-05	3.61337035352793e-05
3	80009424	80015980	1	loss	A	-1	somatic	0	0.0292673192129635	0.0841643934836827
3	81776266	81782822	2	neutral	AA	100	somatic	0	0.951715701578017	0.724103755465424
3	82540040	82818670	2	neutral	AA	100	somatic	0	0.666674820742389	0.49523615863427
3	82818670	82825226	1	loss	A	-1	germline	1	0.0143164582171109	0.0366556546313977
3	88437162	88535502	2	neutral	AA	100	somatic	0	0.00341661480753625	0.0124750463787842
3	90322012	90331846	3	gain	AAB	44.3695	germline	1	0.00270280982465064	0.00496393340438972
3	90341680	90508858	2	neutral	AA	5.71335	germline	1	4.695478879072e-09	2.10927210253509e-07
3	93777024	93799970	3	gain	AAB	38.6016	somatic	0	0.000126817458221634	0.00012631522547768
3	93931090	93983538	2	neutral	AA	21.8271	germline	1	0.860546401383797	0.744346109320608
3	98680912	98694024	1	loss	A	-1	somatic	0	0.00299723010840235	0.00594461305284433
3	99179168	99185724	1	loss	A	-1	somatic	0	0.01460841779224	0.0374974740359969
3	99225060	99231616	1	loss	A	-1	somatic	0	0.0143689236320286	0.0367736215538194
3	100621488	100726384	3	gain	AAB	29.9159	germline	1	2.2798043177717e-19	0
3	120997536	121049984	2	neutral	AA	100	somatic	0	0.0308680380056929	0.0248275655633142
3	129618676	129651456	2	neutral	AA	100	somatic	0	0.136665748591989	0.100587669699312
3	130415230	130503736	2	neutral	AA	69.4389	somatic	0	0.0544306317982128	0.0764224758460298
3	137849734	137875958	2	neutral	AA	21.8271	somatic	0	0.0416747793642407	0.0631998965503722
3	140822880	140829436	1	loss	A	-1	somatic	0	0.0144934474148174	0.0371776870635826
3	144238556	144418846	2	neutral	AA	100	germline	1	0.00763153697949573	0.037538163405496
3	156537612	156590060	2	neutral	AA	36.3786	somatic	0	0.023633769611685	0.00952452383717139
3	161513616	161562786	2	neutral	AA	9.93569	somatic	0	0.409004487498221	0.753068826179491
3	162795314	162906766	1	loss	A	-1	somatic	0	1.11681291422324e-20	0
3	178755896	178762452	1	loss	A	-1	somatic	0	0.0143572350952385	0.0367671490225986
3	185452850	185459406	1	loss	A	-1	germline	1	0.0240509133190028	0.0671323104154636
3	191346694	191353250	1	loss	A	-1	germline	1	0.0143262407015626	0.0366629169774298
3	193156150	193169262	1	loss	A	-1	germline	1	0.014319405742617	0.0366613030139743
4	124564	134398	1	loss	A	-1	germline	1	0.0148562677905696	0.0382840092844642
4	829334	930952	2	neutral	AA	100	somatic	0	0.128983644847913	0.426814451853328
4	3474680	3530406	2	neutral	AA	100	somatic	0	0.814697763427131	0.691305254912802
4	4579366	4595756	2	neutral	AA	54.5683	somatic	0	0.56965709987798	0.745857400629534
4	7283716	7290272	2	neutral	AA	100	somatic	0	0.612236857447359	0.849610772365743
4	7863922	7867200	5	gain	AAABB	6.50903	germline	1	0.0832704562459981	0.270047007303368
4	10391260	10401094	1	loss	A	-1	germline	1	0.00271313116989006	0.00498388350930368
4	12148268	12161380	1	loss	A	-1	germline	1	0.0106097284809831	0.0298287470731642
4	12161380	12164658	2	neutral	AA	100	somatic	0	0.934093505365933	0.946613572569513
4	12174492	12184326	2	neutral	AA	100	somatic	0	0.194532865575536	0.364844020521823
4	13839716	13938056	2	neutral	AA	100	somatic	0	0.0622434183315411	0.15412900822695
4	21978990	22024882	2	neutral	AA	100	somatic	0	0.751361847591486	0.96173189340581
4	26142050	26148606	2	neutral	AA	100	somatic	0	0.189297859463826	0.254417856735989
4	37778950	37801896	2	neutral	AA	100	somatic	0	0.730938016513174	0.707942922522381
4	40293176	40296454	4	gain	AAAB	60.0149	germline	1	0.0832738506342817	0.270052902587358
4	43384330	43417110	2	neutral	AA	100	somatic	0	0.0754278967197035	0.0595524066063061
4	43879308	43905532	2	neutral	AA	100	somatic	0	0.0652486080266147	0.086889115974804
4	45508474	45515030	2	neutral	AA	36.3786	somatic	0	0.2265210439584	0.699325373553531
4	46200132	46203410	1	loss	A	-1	germline	1	0.0832797910834836	0.270063219560398
4	49088050	49091328	3	gain	AAB	15.1529	somatic	0	0.083352801764465	0.270189994423996
4	49147054	49156888	86	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBBBBBBBBBBBBBBB	70.4451	germline	1	0.0143061460920934	0.0366314559005733
4	49651866	49658422	31	gain	AAAAAAAAAAAAAAAAAAAAABBBBBBBBBB	17.9577	germline	1	0.0143061460920934	0.0366314559005733
4	54404966	54411522	2	neutral	AA	54.5678	somatic	0	0.264690774832298	0.376281482914086
4	57033922	57040478	2	neutral	AA	100	somatic	0	0.848394103428591	0.994024478547484
4	61072418	61078974	1	loss	A	-1	germline	1	0.0145183846733778	0.0372660038078052
4	63196562	63203118	1	loss	A	-1	somatic	0	0.0369897461624296	0.109943322265802
4	63829216	63845606	1	loss	A	-1	germline	1	0.000107977736433376	9.1367468179504e-05
4	64045564	64130792	2	neutral	AA	100	somatic	0	0.131148779925037	0.171969601237393
4	64530708	64632326	2	neutral	AA	100	somatic	0	0.0421055919965786	0.0646466024010377
4	67317008	69057626	2	neutral	AA	33.9038	somatic	0	0.201657047854796	0.33461714301255
4	70617954	70624510	1	loss	A	-1	somatic	0	0.0143851940567658	0.0367582509194884
4	76065990	76072546	2	neutral	AA	100	somatic	0	0.668343074353781	0.948315906934309
4	76515076	76816652	2	neutral	AA	25.7317	somatic	0	0.0979372551866719	0.0429818598664614
4	79901250	79911084	2	neutral	AA	54.571	somatic	0	0.474945297403699	0.217781857938903
4	90367904	90374460	2	neutral	AA	100	somatic	0	0.0484265882304904	0.0908158936200005
4	91010392	91016948	1	loss	A	-1	somatic	0	0.0143864049026591	0.0367898072430403
4	106135084	106138362	0	loss	-	-1	germline	1	0.0832679105283397	0.270042585902031
4	109799888	109809722	2	neutral	AA	100	somatic	0	0.261042979186211	0.305015732810237
4	114585768	114592324	1	loss	A	-1	germline	1	0.014349581636419	0.0367133846704641
4	115146306	115156140	2	neutral	AA	100	somatic	0	0.168414002335557	0.323132383908147
4	128137020	128173078	2	neutral	AA	37.1447	somatic	0	0.839528969709608	0.953030786624304
4	129399050	129484278	2	neutral	AA	27.3084	somatic	0	0.0969321624632713	0.120265839176704
4	137253138	137295752	2	neutral	AA	100	somatic	0	0.591879262013592	0.666589343751782
4	142691340	142730676	2	neutral	AA	72.1056	somatic	0	0.532161554194928	0.692070318553368
4	152722020	152728576	2	neutral	AA	18.3223	somatic	0	0.880733370306347	0.995409617826013
4	159455032	159461588	2	neutral	AA	100	somatic	0	0.821733156266043	0.866072226265679
4	160127022	160149968	1	loss	A	-1	germline	1	4.62255041638982e-06	1.67298446873687e-06
4	160956356	160966190	1	loss	A	12.0243	germline	1	0.00290116708975741	0.00550823230951869
4	161726686	161729964	2	neutral	AA	100	somatic	0	0.297972145755945	0.543437510459897
4	162542908	162582244	2	neutral	AA	77.1065	somatic	0	0.0822413314334077	0.0554048049847643
4	166663354	166666632	1	loss	A	-1	somatic	0	0.0832865805886212	0.270075010739013
4	169787288	169836458	2	neutral	AA	36.4449	somatic	0	0.288484624802724	0.481534142092498
4	172311348	172347406	2	neutral	AA	74.9514	somatic	0	0.885370366479745	0.997087085833024
4	178916518	178998468	2	neutral	AA	10.0856	somatic	0	0.771616478385225	0.637682695910021
4	185518410	185524966	1	loss	A	-1	germline	1	0.0143566978929646	0.0367234854992309
4	186170732	186177288	0	loss	-	-1	germline	1	0.0143116361479815	0.0366459734612316
4	187068904	187111518	2	neutral	AA	100	somatic	0	0.392213255808307	0.635558377393498
4	187426206	187445874	2	neutral	AA	19.0778	somatic	0	0.561677045925251	0.639686197526362
4	189268442	189278276	1	loss	A	-1	germline	1	0.00274688758553842	0.00509077591451268
5	413028	416306	4	gain	-	-1	germline	1	0.0832755478704552	0.270055850264582
5	3320614	3330448	3	gain	-	-1	somatic	0	0.00284647599393342	0.00542702659104388
5	12810424	12820258	1	loss	A	-1	somatic	0	0.00270703673996666	0.00496827840959957
5	23903176	23906454	1	loss	A	-1	somatic	0	0.0832916730117204	0.270083854369577
5	45370798	45377354	1	loss	A	-1	germline	1	0.0143389801612338	0.0366972284000733
5	46268970	46275526	1	loss	A	-1	germline	1	0.0144773396337132	0.0371078994996278
5	49599418	49602696	216	gain	-	-1	germline	1	0.0832653648737266	0.270038164553525
5	52910198	52913476	1	loss	A	-1	germline	1	0.0832925217734248	0.270085328328555
5	58027156	58030434	0	loss	-	-1	germline	1	0.0832730020267029	0.270051428757559
5	84651072	84660906	1	loss	A	-1	germline	1	0.0143408583998403	0.0367275265114375
5	86417914	86424470	1	loss	A	-1	somatic	0	0.0187690037763382	0.0503189252411186
5	86916170	86922726	1	loss	A	-1	germline	1	0.0145453974385709	0.0373471219220191
5	92341260	92347816	1	loss	A	-1	germline	1	0.0144184576863533	0.0368367809896587
5	99008712	99011990	0	loss	-	-1	germline	1	0.0832763964990499	0.270057324112007
5	106384212	106390768	1	loss	A	-1	somatic	0	0.0159211110280793	0.0414900914970007
5	120043638	120050194	1	loss	A	-1	germline	1	0.0144017500664791	0.0368193621916856
5	137518656	137521934	1	loss	A	-1	germline	1	0.0832891267686438	0.270079432527873
5	140695038	140698316	2	neutral	AA	100	somatic	0	0.826899538641404	0.909058013048607
5	141173626	141176904	3	gain	AAA	54.5678	somatic	0	0.0838994745510379	0.271137755928717
5	141629268	141632546	2	neutral	AA	100	somatic	0	0.415513840463879	0.652414884269527
5	143973038	143976316	1	loss	A	-1	somatic	0	0.0839618185334684	0.271245676502185
5	149752152	149758708	2	neutral	AA	43.5045	somatic	0	0.930410310943966	0.992480261508758
5	149922608	149935720	2	neutral	AA	10.9515	somatic	0	0.98585601115072	0.99214248680358
5	153344840	153361230	2	neutral	AA	100	somatic	0	0.463614024022243	0.572124419258606
5	153885710	154082390	2	neutral	AA	100	somatic	0	0.864765469406981	0.699456412039408
5	156763794	156783462	2	neutral	AA	54.5707	somatic	0	0.652949229610549	0.651489097774373
5	158006156	158022546	2	neutral	AA	54.5679	somatic	0	0.487726673137287	0.906805407528564
5	159799222	159825446	2	neutral	AA	54.6584	somatic	0	0.0395657427963074	0.186974415017715
5	162346228	162349506	2	neutral	AA	100	somatic	0	0.0853480934479006	0.273638270039462
5	163309960	163323072	2	neutral	AA	100	somatic	0	0.868180136948019	0.977844392081582
5	163647594	163654150	2	neutral	AA	100	somatic	0	0.538667727658232	0.76693894620843
5	164440870	164457260	2	neutral	AA	100	somatic	0	0.477767880761861	0.383375961829346
5	165162030	165168586	2	neutral	AA	100	somatic	0	0.580929919642804	0.847028769122607
5	166663354	166751860	2	neutral	AA	67.0274	somatic	0	0.100817784701494	0.192153148320166
5	167351734	167355012	2	neutral	AA	100	somatic	0	0.812850181855739	0.90325217028414
5	167735260	167781152	2	neutral	AA	54.5792	somatic	0	0.721508219142399	0.627895530241446
5	170262598	170292100	2	neutral	AA	100	germline	1	0.938065184885619	0.990261765420984
5	171832760	171836038	2	neutral	AA	100	germline	1	0.18899489264827	0.422102627358791
5	172304792	172331016	2	neutral	AA	54.5696	germline	1	0.185119633176093	0.221204956019384
5	173911012	173914290	2	neutral	AA	100	somatic	0	0.204846210654415	0.441361023702451
5	174625616	174635450	2	neutral	AA	100	somatic	0	0.0862296135587381	0.243409773588019
5	178585440	178588718	4	gain	AAAA	11.537	germline	1	0.0832755478704552	0.270055850264582
5	180037594	180040872	2	neutral	AA	100	germline	1	0.426335088911609	0.66152790652467
5	180948878	181001326	1	loss	A	-1	germline	1	4.33593654191572e-12	2.59792187762287e-14
5	181043940	181047218	4	gain	AAAA	26.2172	germline	1	0.0832738506342817	0.270052902587358
6	255684	380248	4	gain	AABB	0.572436	germline	1	2.70339817409165e-25	0
6	380248	383526	3	gain	AAB	9.12357	germline	1	0.0832806397471059	0.270064693437169
6	19041902	19048458	1	loss	A	-1	somatic	0	0.0143266428475767	0.03666453100305
6	20428496	20441608	2	neutral	AA	54.5883	somatic	0	0.317441030082273	0.429834314723189
6	28466152	28508766	2	neutral	AA	44.1593	somatic	0	0.869995339132245	0.652271756379436
6	32491536	32593154	0	loss	-	-1	germline	1	9.2428865994993e-09	5.62828894601353e-10
6	35785926	35799038	5	gain	AAABB	5.89252	germline	1	0.000532168125389195	0.000671102514966271
6	39781808	39808032	2	neutral	AA	100	germline	1	0.602236211605327	0.679887387881263
6	50841780	50868004	2	neutral	AA	92.494	somatic	0	0.405386435518374	0.221619357998652
6	54067332	54070610	0	loss	-	-1	somatic	0	0.0832763964990499	0.270057324112007
6	60229972	60236528	3	gain	-	-1	somatic	0	0.0143124397266622	0.0366447634722697
6	60236528	60239806	5	gain	-	-1	somatic	0	0.0832738506342817	0.270052902587358
6	66297550	66340164	1	loss	A	-1	germline	1	4.33214190655028e-10	1.1200040894721e-11
6	67385846	67530078	2	neutral	AA	23.2671	somatic	0	0.238492178129451	0.281593269226774
6	73902510	73912344	1	loss	A	-1	somatic	0	0.0143169940910279	0.0366548477817589
6	76731424	76741258	1	loss	A	-1	somatic	0	0.0143316034672063	0.0366883451030184
6	78258972	78327810	1	loss	A	-1	germline	1	2.12116976423064e-15	0
6	109029558	109131176	2	neutral	AA	68.3097	somatic	0	0.218736572944843	0.577749679902392
6	149778376	149817712	2	neutral	AA	100	somatic	0	0.140905011279989	0.169212262338435
6	157307942	157311220	8	gain	AAAAABBB	5.45904	germline	1	0.0832662134182593	0.270039638330487
6	160251586	160258142	2	neutral	AA	100	somatic	0	0.504361318048401	0.865551750477195
6	163418134	163506640	2	neutral	AA	27.3301	somatic	0	0.0105582402947516	0.00131063654573571
6	165309540	165319374	1	loss	A	-1	germline	1	0.00271901718165521	0.00499532831394844
7	862114	927674	2	neutral	AA	22.1616	somatic	0	0.951314831253907	0.519209799376069
7	3569742	3579576	1	loss	A	-1	germline	1	0.0027469867036878	0.00508524355221807
7	5493928	5539820	2	neutral	AA	100	somatic	0	0.145358607944236	0.301119503081976
7	9761884	9765162	0	loss	-	-1	germline	1	0.0832679105283397	0.270042585902031
7	23998238	24001516	1	loss	A	-1	somatic	0	0.0832797910834836	0.270063219560398
7	26092880	26105992	1	loss	A	-1	germline	1	0.000576322984813716	0.000796901180426968
7	28089182	28112128	2	neutral	AA	20.6011	somatic	0	0.320146926282018	0.226512132694062
7	30564072	30590296	2	neutral	AA	21.0552	somatic	0	0.0344347165258244	0.0113327495903587
7	48996266	49078216	2	neutral	AA	28.7633	somatic	0	0.634009692642531	0.857335755162053
7	49937052	49950164	2	neutral	AA	100	somatic	0	0.386093770862657	0.637244573805623
7	57486286	57496120	3	gain	AAB	1.64836	germline	1	0.00270100362221756	0.00495934624022942
7	57879646	57902592	2	neutral	AA	1.67018	somatic	0	0.0468774375113125	0.012338722867731
7	57902592	58059936	2	neutral	AA	1.21431	somatic	0	4.18481586256157e-19	0
7	58059936	58066492	4	gain	AABB	66.0622	germline	1	0.0143093595578461	0.0366371010205605
7	58066492	61046194	2	neutral	AA	-1	somatic	0	7.3998874810931e-14	3.33066907387547e-16
7	61046194	61059306	3	gain	-	-1	germline	1	0.000532352021016956	0.000671338928899701
7	61059306	61964034	2	neutral	AA	2.00107	somatic	0	7.96593016900516e-05	0.00241482533470039
7	62295112	62357394	3	gain	AAB	0.425428	germline	1	4.36745377683295e-10	1.20793375302242e-11
7	62403286	62406564	5	gain	-	-1	germline	1	0.0832738506342817	0.270052902587358
7	62439344	62455734	3	gain	AAB	2.74167	germline	1	0.000108895173530572	9.38959458092192e-05
7	62540962	62544240	1	loss	A	-1	somatic	0	0.0832806397471059	0.270064693437175
7	64124236	64150460	2	neutral	AA	81.5056	somatic	0	0.386632124481314	0.341367785298409
7	65796016	65822240	3	gain	AAB	0.20795	germline	1	9.67201561012204e-07	2.26651296064695e-07
7	67775928	67825098	2	neutral	AA	54.5873	somatic	0	0.737897372760899	0.959423487529899
7	68293852	68375802	2	neutral	AA	21.1233	germline	1	0.819398326126354	0.77902136136663
7	70867082	70886750	2	neutral	AA	27.9694	germline	1	0.150643475438678	0.0788317732789099
7	70955588	70962144	0	loss	-	-1	germline	1	0.0143096273753979	0.0366383107881532
7	71896374	71922598	1	loss	A	-1	germline	1	9.69368285404319e-07	2.2697077184386e-07
7	81107554	81264898	2	neutral	AA	54.5873	germline	1	0.792838718841121	0.975745719960546
7	88968198	89020646	2	neutral	AA	100	somatic	0	0.719843475311621	0.761118478894401
7	97766350	97772906	1	loss	A	-1	germline	1	0.0143279834062066	0.03666453100305
7	100729662	100739496	1	loss	A	-1	germline	1	0.00270933597717603	0.00497139584188055
7	100949288	100955844	3	gain	AAB	1.54003	germline	1	0.0143101630237666	0.0366387140517818
7	100955844	100959122	14	gain	AAAAAAAAAAAAAB	3.88841	germline	1	0.0832653648737266	0.270038164553525
7	100959122	100968956	4	gain	AABB	0.321634	germline	1	0.00270063763457332	0.00495852751278125
7	100968956	100978790	3	gain	AAB	0.902681	germline	1	0.00272688334626002	0.00503794200173957
7	106099026	106102304	4	gain	-	-1	germline	1	0.0832755478704552	0.270055850264582
7	131513360	131526472	2	neutral	AA	100	somatic	0	0.938445382632315	0.806560081763311
7	146765894	146838010	2	neutral	AA	19.2887	somatic	0	0.288001838996519	0.441892276727518
7	152400776	152407332	9	gain	AAAAAAABB	3.85265	germline	1	0.0143066816255072	0.0366330687143365
7	152581066	152872808	2	neutral	AA	8.03056	somatic	0	0.00247354869577004	0.00525214165049293
7	155973796	155980352	2	neutral	AA	100	somatic	0	0.261531519260409	0.245397909822022
7	157999600	158058604	2	neutral	AA	53.9843	somatic	0	0.977197242168744	0.988391356951657
7	158592918	158596196	4	gain	AAAA	21.0308	germline	1	0.0832746992488657	0.270054376423034
7	159176402	159186236	2	neutral	AA	100	somatic	0	0.0218752715517499	0.106294737631326
7	159186236	159209182	2	neutral	AA	7.00485	somatic	0	0.185247146871322	0.196525795172434
7	159323912	159330468	1	loss	A	-1	somatic	0	0.0145335823906251	0.0372246847433749
8	3927044	3933600	1	loss	A	-1	germline	1	0.0143467628483352	0.0366935940965827
8	6110192	6116748	1	loss	A	-1	germline	1	0.0143450181290514	0.036692382732064
8	25116036	25132426	1	loss	A	-1	germline	1	0.000107764483962476	9.10112235171789e-05
8	40915996	40922552	1	loss	A	-1	germline	1	0.0144658437429218	0.0370610307978145
8	42332092	42338648	1	loss	A	-1	germline	1	0.0143195397337672	0.036666548622497
8	42518938	42525494	1	loss	A	-1	somatic	0	0.0145048271260869	0.0372152810534525
8	43236820	43240098	4	gain	-	-1	germline	1	0.0832738506342817	0.270052902587358
8	47249092	47294984	2	neutral	AA	54.5687	germline	1	0.286366146487739	0.443721816920196
8	74449936	74456492	1	loss	A	-1	germline	1	0.014328117468155	0.036692382732064
8	77085448	77101838	2	neutral	AA	100	germline	1	0.38507671740478	0.320816358607433
8	80343780	80356892	2	neutral	AA	100	germline	1	0.349923560369101	0.591721059164081
8	80628966	80665024	2	neutral	AA	100	somatic	0	0.170487140790154	0.387987637015985
8	81084608	81248508	2	neutral	AA	76.393	somatic	0	0.1145184707177	0.0833630071251236
8	83884020	83913522	2	neutral	AA	100	somatic	0	0.916708393043499	0.583802133021778
8	86073724	86129450	2	neutral	AA	49.1754	somatic	0	0.0802097338810067	0.0760373759856926
8	92859184	92990304	2	neutral	AA	63.0759	somatic	0	0.276238579752028	0.578352874966454
8	111281544	111284822	0	loss	-	-1	germline	1	0.0832704562459981	0.270047007303374
8	111806024	112458346	2	neutral	AA	27.4207	somatic	0	0.0144507697874434	0.0132087586206767
8	131690372	131710040	2	neutral	AA	100	somatic	0	0.720292906174246	0.933959560459921
8	132673772	132745888	2	neutral	AA	50.2698	somatic	0	0.59200746783476	0.720479928754268
8	136148452	136151730	0	loss	-	-1	germline	1	0.0832679105283397	0.270042585902031
8	141537484	141570264	2	neutral	AA	2.3027	germline	1	0.0504617954373173	0.301221957165278
8	143619014	143632126	1	loss	A	-1	germline	1	0.000533986100251876	0.000674107811793112
8	144123826	144127104	4	gain	AAAA	7.21127	germline	1	0.0832738506342817	0.270052902587358
9	35910490	35917046	3	gain	-	-1	germline	1	0.0172504488273884	0.0456121909924233
9	40912718	40915996	7	gain	-	-1	germline	1	0.0832687590938874	0.270044059696601
9	40922552	40925830	6	gain	-	-1	germline	1	0.0832687590938874	0.270044059696601
9	40925830	40929108	7	gain	-	-1	germline	1	0.0832687590938874	0.270044059696601
9	69126464	69129742	1	loss	A	-1	germline	1	0.0832865805886212	0.270075010739013
9	71437454	71466956	2	neutral	AA	100	somatic	0	0.396340326033763	0.830502031527591
9	75387444	75397278	1	loss	A	-1	germline	1	0.00275393309879959	0.00512037510014673
9	76406902	76610138	2	neutral	AA	45.6226	somatic	0	0.157543983699413	0.194403779521645
9	76941216	76944494	1	loss	A	-1	somatic	0	0.0833349687922932	0.2701590337638
9	76944494	76960884	2	neutral	AA	46.9982	somatic	0	0.271459363760302	0.188709237518776
9	79350546	79393160	2	neutral	AA	100	somatic	0	0.878809822582899	0.964790307969067
9	81727096	81733652	2	neutral	AA	100	germline	1	0.869036890223308	0.976484335624589
9	88142142	88151976	2	neutral	AA	36.386	somatic	0	0.226360677431985	0.232999555118505
9	89125542	89141932	2	neutral	AA	12.6846	somatic	0	0.473334241029567	0.541049454434772
9	89499234	89532014	2	neutral	AA	72.4056	somatic	0	0.521554534971241	0.852095961124128
9	90692426	90718650	2	neutral	AA	54.5678	somatic	0	0.609025291358739	0.469137388090875
9	92272422	92278978	2	neutral	AA	54.5722	somatic	0	0.163509374837018	0.286099932578165
9	98671078	98674356	2	neutral	AA	100	somatic	0	0.903986177749216	0.937250527135154
9	103007872	103017706	1	loss	A	-1	somatic	0	0.00297091914972432	0.00572205931563829
9	108842712	108849268	2	neutral	AA	100	somatic	0	0.424782926620292	0.856588227588111
9	111209428	111245486	2	neutral	AA	44.7715	somatic	0	0.555222217618922	0.74888763164664
9	115565890	115667508	2	neutral	AA	26.4856	somatic	0	0.786622720255376	0.919661594771999
9	120653346	120656624	2	neutral	AA	100	somatic	0	0.711685141204248	0.855320731530076
9	122721764	122747988	2	neutral	AA	30.3174	somatic	0	0.53805689379498	0.849210722057804
9	125701466	125704744	2	neutral	AA	100	somatic	0	0.468394321482444	0.695697229568499
9	126003042	126042378	2	neutral	AA	36.4506	somatic	0	0.114956224256615	0.261187370181744
9	128648388	128651666	1	loss	A	-1	germline	1	0.0832814884177338	0.270066167319823
9	128651666	128687724	2	neutral	AA	70.3386	somatic	0	0.123361172103768	0.258617041877927
9	129113864	129258096	2	neutral	AA	59.8918	somatic	0	2.04458717597119e-28	0
9	134709410	134732356	2	neutral	AA	25.5544	somatic	0	0.5335854831674	0.744291552944965
9	135394512	135417458	2	neutral	AA	85.8485	somatic	0	0.231768862375829	0.669623478919385
9	136400858	136456584	2	neutral	AA	47.9217	somatic	0	0.0550452691062585	0.0234611482610992
9	136767994	136800774	2	neutral	AA	30.8703	somatic	0	0.500365516741344	0.684661075676729
9	136800774	136804052	3	gain	AAA	17.8504	somatic	0	0.0832772451346501	0.270058797965291
9	137325254	137328532	4	gain	AABB	100	germline	1	0.0832738506342817	0.270052902587358
9	137544880	137587494	2	neutral	AA	18.8642	somatic	0	0.492000465323652	0.898430601930387
9	137715336	137718614	3	gain	AAB	15.6447	germline	1	0.0832831857800065	0.270069115102727
9	138082472	138089028	1	loss	A	-1	somatic	0	0.0144621937920284	0.0370565504186653
10	5847952	5851230	0	loss	-	-1	germline	1	0.0832763964990499	0.270057324112007
10	38483720	38526334	3	gain	-	-1	germline	1	5.38776099253235e-10	3.57717189203299e-11
10	38526334	38529612	17	gain	-	-1	germline	1	0.0832653648737266	0.270038164553525
10	38575504	38578782	3	gain	-	-1	germline	1	0.083354500303966	0.270192943193355
10	38578782	38582060	6	gain	-	-1	germline	1	0.0832687590938874	0.270044059696601
10	38582060	38834466	3	gain	-	-1	germline	1	4.40953730752158e-13	1.98729921407903e-14
10	39558904	39562182	1	loss	A	-1	somatic	0	0.0832865805886212	0.270075010739013
10	41820724	41843670	2	neutral	AA	4.6775	germline	1	0.000304747713498477	0.0028740212682834
10	41856782	41915786	24	gain	AAAAAAAAAAAAAAAABBBBBBBB	1.86047	somatic	0	2.20926041881987e-05	1.22896420905461e-05
10	42299312	42322258	3	gain	AAB	2.97529	somatic	0	4.64938687674976e-06	1.68962409630158e-06
10	42361594	43499060	2	neutral	AA	6.86368	germline	1	0.950986678250972	0.717949599094634
10	46170630	46331252	3	gain	AAB	0.372674	germline	1	1.0956062709164e-20	0
10	46514820	46560712	7	gain	AAAABBB	0.687423	germline	1	1.97463867132119e-09	7.55525642048838e-11
10	46993408	47016354	2	neutral	AA	100	somatic	0	0.573024971916074	0.832521005901507
10	62416398	62426232	2	neutral	AA	100	somatic	0	0.34668601143069	0.359341469091573
10	65546888	65556722	1	loss	A	-1	germline	1	0.00271769181270699	0.0049917852641137
10	68618374	68713436	2	neutral	AA	27.3233	germline	1	0.00137927353085439	0.0100790751245931
10	76495408	76501964	1	loss	A	-1	somatic	0	0.0143755777519767	0.0367817136195762
10	81120666	81130500	1	loss	A	-1	germline	1	0.00270554563581825	0.00496696634269467
10	128461542	128464820	7	gain	AAAABBB	8.44259	germline	1	0.0832687590938874	0.270044059696601
10	131110166	131113444	0	loss	-	-1	germline	1	0.0832763964990499	0.270057324112007
10	132362362	132365640	4	gain	AABB	9.24382	germline	1	0.0832738506342817	0.270052902587358
11	28984076	28987354	1	loss	A	-1	germline	1	0.0832797910834836	0.270063219560398
11	36625094	36634928	1	loss	A	-1	germline	1	0.00273875865062945	0.0050569974035628
11	37742892	37746170	1	loss	A	-1	somatic	0	0.0833111963035465	0.270117756911585
11	45406856	45410134	1	loss	A	-1	somatic	0	0.0833256289450768	0.270142817308564
11	47039300	47042578	0	loss	-	-1	germline	1	0.0832730020267029	0.270051428757559
11	54755712	54778658	1	loss	A	-1	germline	1	2.23147809836982e-05	1.24608104944413e-05
11	54929446	54936002	5	gain	AAAAB	100	germline	1	0.0143076188515337	0.0366338751445161
11	54936002	54939280	3	gain	AAB	89.8727	germline	1	0.0832908242570221	0.270082380416465
11	55224466	55250690	2	neutral	AA	23.7568	somatic	0	0.244620084881683	0.401755508631297
11	57299440	57387946	2	neutral	AA	100	somatic	0	0.818859657727446	0.908683447033625
11	61941088	62150880	2	neutral	AA	10.084	somatic	0	0.0323622954553312	0.142478722822786
11	63983282	64012784	2	neutral	AA	27.287	somatic	0	0.668706429055807	0.748464547730716
11	64478260	64494650	2	neutral	AA	100	germline	1	0.0377644952721941	0.0757716410062288
11	64592990	64609380	2	neutral	AA	9.95363	somatic	0	0.639133093223796	0.921613827303891
11	64920790	64924068	2	neutral	AA	100	somatic	0	0.598144293834469	0.788674488013523
11	69313310	69391982	2	neutral	AA	100	germline	1	0.412384149346274	0.508651618892651
11	69549326	69572272	2	neutral	AA	16.179	germline	1	0.441561234253518	0.694309209279622
11	75436614	75453004	2	neutral	AA	100	somatic	0	0.763692130246505	0.996110521076763
11	75728356	75731634	2	neutral	AA	100	somatic	0	0.910384579047563	0.939304288406618
11	78783452	78812954	2	neutral	AA	54.5678	somatic	0	0.744570615555925	0.600175973360341
11	80982990	81012492	2	neutral	AA	100	somatic	0	0.751285477593647	0.789159436713271
11	82146680	82153236	1	loss	A	-1	germline	1	0.0143401875754272	0.0367255059567089
11	83874186	83906966	2	neutral	AA	21.8922	somatic	0	0.969339286350388	0.897881807050611
11	87201356	87394758	2	neutral	AA	100	germline	1	0.037206675229696	0.059334192020537
11	87958574	87961852	2	neutral	AA	100	somatic	0	0.998157513215841	0.963531689645002
11	87974964	87978242	1	loss	A	-1	somatic	0	0.0833264779870574	0.270144291502409
11	91239852	91252964	2	neutral	AA	54.5678	somatic	0	0.693796972048768	0.935827733213374
11	94376898	94383454	1	loss	A	-1	germline	1	0.0143487762185522	0.0367178287356323
11	102729242	102732520	3	gain	AAB	6.31269	somatic	0	0.08328997550933	0.27008090646923
11	103142270	103152104	2	neutral	AA	86.5279	somatic	0	0.629261575479255	0.823633680051717
11	104397744	104404300	1	loss	A	-1	germline	1	0.0146156471175171	0.0375431770795638
11	106285872	106308818	2	neutral	AA	78.9399	somatic	0	0.084065258310832	0.293198835155471
11	108383792	108387070	2	neutral	AA	100	germline	1	0.92515183120177	0.943933725479568
11	113425356	113445024	2	neutral	AA	100	somatic	0	0.106373368152557	0.294765886355302
11	117467130	117470408	2	neutral	AA	100	somatic	0	0.279051238310417	0.523996466692822
11	117857212	117860490	2	neutral	AA	100	somatic	0	0.255094351576205	0.498499068171241
11	121702306	121718696	2	neutral	AA	72.6657	somatic	0	0.639502617777137	0.880912886042197
11	122656204	122659482	2	neutral	AA	100	somatic	0	0.523444737453927	0.737420749835235
11	129664568	129677680	2	neutral	AA	100	somatic	0	0.180089309751462	0.24151925098165
11	131264232	131267510	1	loss	A	-1	germline	1	0.0833409127729368	0.270169353696147
11	131339626	131342904	3	gain	AAB	54.2534	somatic	0	0.0832831857800065	0.270069115102727
11	134437336	134460282	2	neutral	AA	28.4258	somatic	0	0.53813726515974	0.505249744529513
12	2255264	2258542	5	gain	AAABB	10.0415	germline	1	0.0832704562459981	0.270047007303368
12	7159152	7178820	2	neutral	AA	54.8558	somatic	0	0.615126548649912	0.411560149206286
12	15865520	15868798	0	loss	-	-1	germline	1	0.0832696076664402	0.270045533497055
12	18094560	18101116	1	loss	A	-1	somatic	0	0.0143639516197838	0.0367558244910781
12	20903806	21152934	2	neutral	AA	27.9479	somatic	0	0.00794187734209567	0.0497257956259755
12	28534990	28574326	2	neutral	AA	36.4154	somatic	0	0.956528153728481	0.827691850626456
12	30177268	30200214	2	neutral	AA	70.2947	somatic	0	0.0917254766641572	0.191627227079327
12	30239550	30446064	2	neutral	AA	12.6714	somatic	0	0.146184714641655	0.186007714220625
12	33235642	33242198	1	loss	A	-1	germline	1	0.0143399192534121	0.0367085371360665
12	34278046	34691074	2	neutral	AA	3.70945	somatic	0	2.29589224240206e-14	4.02576860736303e-11
12	34691074	34697630	1	loss	A	-1	germline	1	0.0143180658919424	0.036660092582177
12	37595382	37601938	1	loss	A	-1	germline	1	0.0143767206520171	0.0368371861637397
12	37601938	37605216	2	neutral	AA	100	germline	1	0.211872481108492	0.449698558703265
12	37615050	37624884	1	loss	A	-1	germline	1	0.0143167261518578	0.0366576718234785
12	37624884	37729780	2	neutral	AA	2.27718	germline	1	0.000219369679921746	0.000613058650751563
12	39709692	39716248	1	loss	A	-1	somatic	0	0.0143593840816383	0.0367404603648452
12	41771554	42191138	2	neutral	AA	0.818974	somatic	0	0.827714504539407	0.536087801010027
12	45508474	45515030	1	loss	A	-1	germline	1	0.014339114313938	0.0367028823870156
12	48314442	48317720	0	loss	-	-1	germline	1	0.0832772451346501	0.270058797965298
12	51038460	51048294	2	neutral	AA	100	somatic	0	0.564100997825952	0.815347039999067
12	59541592	59554704	1	loss	A	-1	germline	1	0.000540856367912236	0.000695256424170121
12	60321756	60364370	2	neutral	AA	46.8716	somatic	0	0.949045472012213	0.913197693719752
12	64629048	64635604	2	neutral	AA	100	somatic	0	0.509458438423062	0.872754314638567
12	71207994	71211272	1	loss	A	-1	germline	1	0.0832865805886212	0.270075010739013
12	82356472	82405642	2	neutral	AA	19.3881	somatic	0	0.986561067581087	0.810094558841331
12	85706588	85729534	2	neutral	AA	100	somatic	0	0.0357647093123631	0.109409560720649
12	86031110	86040944	1	loss	A	-1	somatic	0	0.00275989991903641	0.00510976186563328
12	89459898	89541848	2	neutral	AA	42.7472	somatic	0	0.940223884156986	0.950552153673771
12	90095830	90099108	1	loss	A	-1	germline	1	0.0832882780349637	0.270077958592382
12	93288602	93304992	2	neutral	AA	14.5277	somatic	0	0.814071674311127	0.987927862192071
12	107974042	108042880	2	neutral	AA	31.5194	somatic	0	0.289754676548708	0.105262293356159
12	116749248	116906592	2	neutral	AA	100	somatic	0	0.402629601898267	0.195682923663211
12	118086672	118171900	2	neutral	AA	19.726	somatic	0	0.00667890280287352	0.0361220282061242
12	123256078	123305248	2	neutral	AA	14.4178	somatic	0	0.00641920560598099	0.0383219617426985
12	130395562	130402118	3	gain	AAB	53.3407	germline	1	0.0143325421332269	0.0366976322310094
13	19022234	19025512	2	neutral	AA	100	somatic	0	0.146923032475475	0.367417809613635
13	19127130	19143520	2	neutral	AA	19.3061	somatic	0	0.461040672011987	0.8756475856097
13	20212148	20218704	2	neutral	AA	27.4501	somatic	0	0.284098711040455	0.447956805143677
13	21175880	21208660	2	neutral	AA	36.4342	somatic	0	0.0640132006727546	0.145047363997616
13	22018326	22024882	1	loss	A	-1	germline	1	0.0143761828067212	0.0368055942900765
13	22660814	22664092	2	neutral	AA	100	somatic	0	0.557957123312919	0.761868070899861
13	22998448	23001726	2	neutral	AA	100	somatic	0	0.869243659176264	0.925339499231151
13	26191220	26374788	2	neutral	AA	28.4779	somatic	0	0.385851099659956	0.489447741458285
13	27820386	27823664	2	neutral	AA	100	somatic	0	0.992645361927546	0.962240169045454
13	29505278	29508556	2	neutral	AA	36.4385	somatic	0	0.702031711663321	0.850165075324832
13	30505068	30537848	2	neutral	AA	32.4659	somatic	0	0.650239634773059	0.977825838832583
13	32307968	32350582	2	neutral	AA	54.5678	somatic	0	0.132913190106978	0.310486030030212
13	36241568	36369410	2	neutral	AA	70.038	somatic	0	0.724625913021196	0.960773467074121
13	37497042	37513432	1	loss	A	-1	germline	1	0.000110351871110171	9.73200556864118e-05
13	38205090	38254260	2	neutral	AA	29.5122	somatic	0	0.798215575723698	0.784667065012276
13	38483720	38486998	0	loss	-	-1	germline	1	0.0832763964990499	0.270057324112007
13	45423246	45426524	1	loss	A	-1	germline	1	0.0832806397471059	0.270064693437175
13	47934194	48029256	2	neutral	AA	100	somatic	0	0.858953070903782	0.874566690397424
13	50494312	50497590	1	loss	A	-1	germline	1	0.0832797910834836	0.270063219560398
13	57178154	57217490	1	loss	A	-1	germline	1	3.65515627265289e-09	3.5891559724277e-09
13	59584206	59616986	2	neutral	AA	58.0998	somatic	0	0.766192388654926	0.976319161337794
13	62163992	62180382	2	neutral	AA	100	somatic	0	0.0556552830531663	0.0289869922698013
13	63022828	63058886	3	gain	AAB	0.329002	somatic	0	1.07854857335242e-07	1.55560816450517e-07
13	63058886	63065442	4	gain	AABB	1.2475	germline	1	0.014309091744716	0.03663629452825
13	63065442	63068720	5	gain	AAABB	0.921737	germline	1	0.0832704562459981	0.270047007303368
13	63071998	63176894	2	neutral	AA	61.8071	somatic	0	0.940610789050821	0.943839031561279
13	67002320	67005598	2	neutral	AA	100	somatic	0	0.50147070405822	0.721156690323309
13	68480698	68487254	2	neutral	AA	100	somatic	0	0.176463391778928	0.452011864869141
13	74918690	74921968	2	neutral	AA	100	somatic	0	0.197848979424311	0.432941685230848
13	82592488	82599044	1	loss	A	-1	germline	1	0.0143724183865425	0.0367833322196446
13	88106084	88119196	2	neutral	AA	36.4486	somatic	0	0.814927509171528	0.897186903361706
13	88519112	88545336	2	neutral	AA	100	somatic	0	0.292389940926681	0.250169873293117
13	90210560	90213838	1	loss	A	-1	germline	1	0.0833001609440458	0.270098594223578
13	91334914	91338192	2	neutral	AA	100	somatic	0	0.927717312693768	0.944703377328945
13	93127980	93180428	2	neutral	AA	86.6042	somatic	0	0.191100965623895	0.172853862375298
13	98287552	98307220	2	neutral	AA	100	somatic	0	0.846334992165054	0.929442000448486
13	98602240	98605518	1	loss	A	-1	germline	1	0.0832831857800065	0.270069115102733
13	101241030	101244308	0	loss	-	-1	germline	1	0.0832780937772558	0.27006027182446
13	104299404	104302682	2	neutral	AA	100	somatic	0	0.192548321650238	0.426482989664994
13	105535210	105590936	2	neutral	AA	100	somatic	0	0.491672167190684	0.294047739024172
13	107849478	107852756	2	neutral	AA	100	somatic	0	0.902364888402664	0.936716110823336
13	108908272	108911550	2	neutral	AA	100	somatic	0	0.895248582694374	0.934382196419988
13	109216404	109219682	1	loss	A	-1	germline	1	0.0833621440786687	0.270206212946134
13	110252252	110255530	1	loss	A	-1	somatic	0	0.0833281760920418	0.270147239907713
13	111048806	111058640	2	neutral	AA	100	somatic	0	0.244417697281906	0.21838981693716
13	111629012	111645402	2	neutral	AA	36.3786	somatic	0	0.604018419589808	0.919842764280567
13	112953324	112992660	2	neutral	AA	97.5852	somatic	0	0.869453238221497	0.52947608098554
13	113582700	113848218	2	neutral	AA	9.74322	somatic	0	0.894642869277234	0.978297120881097
14	16091702	16094980	3	gain	-	-1	germline	1	0.0832772451346501	0.270058797965291
14	18487920	18491198	1	loss	A	-1	germline	1	0.0833443094874875	0.270175250929525
14	18658376	18661654	4	gain	AAAB	14.6271	germline	1	0.0832738506342817	0.270052902587358
14	23454090	23480314	2	neutral	AA	54.568	somatic	0	0.71074221866603	0.897928113955639
14	26174830	26184664	2	neutral	AA	100	somatic	0	0.438786925176857	0.509562222407279
14	30180546	30210048	2	neutral	AA	54.5787	germline	1	0.52092112462315	0.761153561373306
14	34346884	34350162	1	loss	A	-1	germline	1	0.083373186088912	0.270225381206499
14	40145666	40148944	0	loss	-	-1	germline	1	0.0832763964990499	0.270057324112007
14	56499608	56538944	2	neutral	AA	27.7559	somatic	0	0.733505400184423	0.882098551636877
14	62560630	62645858	2	neutral	AA	36.5852	somatic	0	0.19220220551766	0.0354465970165196
14	67667754	67677588	2	neutral	AA	100	somatic	0	0.890329194625302	0.929110323247331
14	68729826	68736382	2	neutral	AA	100	somatic	0	0.368903630990342	0.430969365510302
14	69549326	69555882	1	loss	A	-1	somatic	0	0.0143571007930078	0.0367372265279821
14	69775508	69870570	2	neutral	AA	27.2839	somatic	0	0.823078938561928	0.814305876855672
14	72984670	73060064	2	neutral	AA	100	somatic	0	3.11628155947978e-07	1.16909400271759e-06
14	73063342	73066620	1	loss	A	-1	germline	1	0.0833044051729499	0.270105964370763
14	74354874	74508940	2	neutral	AA	21.6604	somatic	0	0.320404855789333	0.567024830738492
14	83195640	83238254	2	neutral	AA	100	somatic	0	0.389578841107648	0.658600101417462
14	87909404	87925794	2	neutral	AA	37.4484	somatic	0	0.464993290254314	0.689783654217048
14	88774796	88912472	2	neutral	AA	39.9133	somatic	0	0.465776092188149	0.523478669361841
14	91292300	91295578	3	gain	AAB	4.15967	germline	1	0.0832840344716515	0.270070589002989
14	99926552	99929830	4	gain	AABB	20.7381	somatic	0	0.0832738506342817	0.270052902587358
14	99929830	100178958	2	neutral	AA	24.106	somatic	0	0.308732674882311	0.235502477384425
14	101709784	101726174	2	neutral	AA	70.2947	germline	1	0.000155256290963232	0.000127720558903754
14	102086754	102122812	2	neutral	AA	28.7725	somatic	0	0.278138723427186	0.328210432694173
15	0	20339990	6	gain	-	-1	somatic	0	0.707177340583637	0.946294537180744
15	20339990	20343268	13	gain	-	-1	germline	1	0.0832653648737266	0.270038164553525
15	20343268	20395716	6	gain	-	-1	germline	1	9.63774247764664e-07	2.25149637933519e-07
15	20644844	20667790	5	gain	-	-1	germline	1	2.21012283350126e-05	1.22937008798507e-05
15	20667790	20671068	4	gain	-	-1	germline	1	0.0832738506342817	0.270052902587358
15	22224840	22251064	3	gain	AAB	1.91738	germline	1	0.000107706992808839	9.09987037721605e-05
15	23437700	23457368	2	neutral	AA	6.5754	germline	1	0.936423408535579	0.887436971550027
15	25591346	25597902	2	neutral	AA	100	somatic	0	0.189818742629013	0.471936017948781
15	34058420	34087922	2	neutral	AA	100	somatic	0	0.364038892959013	0.830860238432241
15	42466490	42646780	2	neutral	AA	94.0455	somatic	0	0.0163346477864833	0.0485696451987987
15	47957140	47993198	2	neutral	AA	54.6179	germline	1	0.792347816998043	0.983721926403674
15	48311164	48380002	2	neutral	AA	100	germline	1	0.912677766926915	0.72676983656256
15	49802654	49825600	2	neutral	AA	54.568	somatic	0	0.658093738572565	0.611226123946951
15	50084562	50087840	1	loss	A	-1	somatic	0	0.0833595960906853	0.270201789642362
15	53516628	53683806	2	neutral	AA	100	germline	1	0.740971113259453	0.984702433952916
15	61200260	61269098	2	neutral	AA	53.2145	somatic	0	0.432062990887714	0.387100855925246
15	64045564	64206186	2	neutral	AA	38.6425	somatic	0	0.336316892221038	0.713314923824618
15	67346510	67372734	2	neutral	AA	100	somatic	0	0.990862240396769	0.681910453830421
15	67870990	67939828	2	neutral	AA	100	somatic	0	0.687604358209707	0.89928343162407
15	69159244	69234638	2	neutral	AA	100	somatic	0	0.824687761080124	0.350200178673012
15	72093054	72096332	1	loss	A	-1	germline	1	0.0832797910834836	0.270063219560398
15	76590470	76603582	1	loss	A	-1	germline	1	0.000552181805515213	0.000728810324582163
15	78485154	78537602	2	neutral	AA	26.183	somatic	0	0.198285522349838	0.104897944573342
15	81694316	81772988	2	neutral	AA	100	germline	1	0.481834299182077	0.723725358347184
15	82667882	82874396	2	neutral	AA	56.4467	somatic	0	0.774297298501704	0.906794793355739
15	85277170	85300116	2	neutral	AA	8.39629	germline	1	0.0216519982180557	0.0208573950397708
15	85506630	85827874	2	neutral	AA	37.714	somatic	0	0.412991489447919	0.397797256331575
15	101850738	101857294	3	gain	-	-1	somatic	0	0.0144640862577688	0.0369349468715673
16	537592	540870	2	neutral	AA	100	somatic	0	0.929726677002404	0.94532254951715
16	1022736	1026014	5	gain	AAAAA	9.9329	germline	1	0.0832738506342817	0.270052902587358
16	1258752	1416096	2	neutral	AA	14.7738	somatic	0	0.312111209647079	0.458565266002606
16	3097710	3104266	2	neutral	AA	54.5679	somatic	0	0.204125180475735	0.375612143134275
16	7598404	7614794	2	neutral	AA	100	somatic	0	0.243835025089662	0.10054441969273
16	8683422	8686700	2	neutral	AA	100	somatic	0	0.190354590020536	0.423789678968006
16	11836858	11840136	2	neutral	AA	100	somatic	0	0.103003396954783	0.302790218191916
16	11889306	11892584	2	neutral	AA	100	somatic	0	0.086998263169042	0.276462717547512
16	12633412	12636690	2	neutral	AA	100	somatic	0	0.863173597058933	0.923086168205666
16	13879052	13882330	2	neutral	AA	100	somatic	0	0.279202616975464	0.524144343570993
16	20185924	20202314	2	neutral	AA	24.8876	somatic	0	0.823266448968492	0.928415694600681
16	21559406	21582352	3	gain	AAB	3.53047	germline	1	4.61276350734558e-06	1.67853492394343e-06
16	22408408	22424798	2	neutral	AA	100	somatic	0	0.246056574150536	0.516499048173915
16	22614922	22700150	3	gain	AAB	1.72454	germline	1	4.75008080668355e-18	0
16	24811182	24834128	2	neutral	AA	18.1908	somatic	0	0.875371828069456	0.731378112307002
16	26007652	26069934	2	neutral	AA	42.9337	somatic	0	0.679284871277748	0.925114761433037
16	28846400	28856234	1	loss	A	-1	somatic	0	0.00287344456349868	0.00544689003804266
16	34061698	34064976	27	gain	AAAAAAAAAAAAAAAAAABBBBBBBBB	100	germline	1	0.0832653648737266	0.270038164553525
16	34068254	34084644	2	neutral	AA	41.1353	somatic	0	0.0192284832022181	0.0167217489468756
16	34084644	34087922	14	gain	AAAAAAAAAABBBB	54.8199	germline	1	0.0832653648737266	0.270038164553525
16	34087922	34094478	2	neutral	AA	71.0693	somatic	0	0.0204313931342442	0.0531798038331459
16	34094478	34101034	7	gain	AAAAABB	2.68959	germline	1	0.0143072171766049	0.0366330687143365
16	34101034	34160038	2	neutral	AA	6.05382	somatic	0	0.396308892845142	0.554883094261678
16	34160038	34163316	3	gain	AAB	1.17937	somatic	0	0.0832797910834836	0.270063219560392
16	34163316	34173150	2	neutral	AA	-1	somatic	0	NA	NA
16	34173150	34176428	5	gain	AAABB	0.96786	germline	1	0.0832704562459981	0.270047007303368
16	34176428	34192818	2	neutral	AA	-1	somatic	0	NA	NA
16	34192818	34212486	3	gain	AAB	1.02414	germline	1	0.000532993761459299	0.0006731589699428
16	34212486	34219042	2	neutral	AA	-1	germline	1	NA	NA
16	34219042	34900866	2	neutral	AA	100	somatic	0	1.34271500366519e-22	0
16	34900866	34904144	4	gain	-	-1	germline	1	0.0832755478704552	0.270055850264582
16	34904144	34953314	3	gain	AAA	2.26473	germline	1	2.25700579732585e-05	1.29821423062726e-05
16	34956592	34959870	2	neutral	AA	4.9093	somatic	0	0.152383926099803	0.374868491927817
16	35979328	36087502	2	neutral	AA	4.49988	germline	1	1.61353662705373e-06	5.12318580598858e-05
16	36087502	36123560	2	neutral	AA	-1	somatic	0	NA	NA
16	36123560	36126838	5	gain	-	-1	germline	1	0.0832704562459981	0.270047007303368
16	36126838	46426314	2	neutral	AA	-1	somatic	0	2.37258762271208e-18	0
16	46426314	46482040	2	neutral	AA	9.92799	germline	1	0.348627333998069	0.529354905985897
16	48966764	48970042	2	neutral	AA	100	germline	1	0.14088241148942	0.359057987170315
16	50471366	50582818	2	neutral	AA	26.038	somatic	0	0.296379048389506	0.30837572490093
16	51700616	51723562	2	neutral	AA	36.3786	germline	1	0.368185408615515	0.424906179046131
16	58748316	58797486	2	neutral	AA	36.8647	somatic	0	0.61297585322901	0.222515836999827
16	59177734	59243294	2	neutral	AA	6.54747	somatic	0	0.329392177970737	0.21112241758219
16	65320706	65323984	1	loss	A	-1	somatic	0	0.0833035563131558	0.270104490329583
16	70149200	70162312	4	gain	AAAB	14.1032	germline	1	0.000532219987392548	0.000671102514966271
16	76420014	76423292	2	neutral	AA	100	germline	1	0.885846137729771	0.931157257546035
16	76508520	76511798	1	loss	A	-1	germline	1	0.0833111963035465	0.270117756911585
16	86945672	86948950	2	neutral	AA	100	germline	1	0.999933449850688	0.963930061815237
16	88958364	88964920	2	neutral	AA	54.5678	somatic	0	0.0331346353686769	0.0617081941520087
16	88991144	89073094	2	neutral	AA	26.0765	somatic	0	0.103254623458871	0.163357718110389
16	89322222	89414006	2	neutral	AA	29.8752	somatic	0	0.856656217820233	0.617777507909304
16	90066328	90082718	2	neutral	AA	55.5796	somatic	0	0.803299565585345	0.973255019743049
17	4399076	4415466	2	neutral	AA	54.5873	germline	1	0.00229404267881385	0.00406523061062303
17	4621980	4710486	2	neutral	AA	95.5164	somatic	0	0.354483911815058	0.748670291038527
17	8175332	8188444	2	neutral	AA	100	somatic	0	0.588553411502331	0.640352809159037
17	11030470	11056694	2	neutral	AA	39.5966	somatic	0	0.247527902046681	0.464938717128836
17	19720448	19730282	2	neutral	AA	57.1973	somatic	0	0.0694132576473071	0.140011357134715
17	21290610	21303722	4	gain	AABB	0.248486	germline	1	0.000532219987392548	0.000671102514966271
17	21674136	21677414	4	gain	-	-1	somatic	0	0.0832738506342817	0.270052902587358
17	21677414	21680692	3	gain	-	-1	somatic	0	0.0835142882399184	0.270470232391002
17	21815090	21854426	4	gain	-	-1	somatic	0	0.000532224702353651	0.000671117288550183
17	21854426	21857704	6	gain	-	-1	germline	1	0.0832687590938874	0.270044059696601
17	21857704	21883928	3	gain	-	-1	germline	1	1.12023428597087e-06	4.05700816275001e-07
17	21929820	21965878	1	loss	A	-1	somatic	0	1.53752891116827e-08	1.01568768950955e-08
17	21965878	21969156	3	gain	-	-1	germline	1	0.0833578974670758	0.270198840802534
17	21975712	21978990	24	gain	-	-1	germline	1	0.0832653648737266	0.270038164553525
17	21978990	22159280	6	gain	AAAABB	0.385146	germline	1	1.97460520896661e-09	7.55625562121054e-11
17	22667370	22716540	2	neutral	AA	5.3587	somatic	0	0.00524043804983464	0.00466926763938513
17	26784538	26791094	4	gain	-	-1	germline	1	0.0143092256507284	0.0366366977724637
17	26791094	26804206	3	gain	-	-1	germline	1	0.000533740218027034	0.000672921955188088
17	26807484	26827152	4	gain	-	-1	germline	1	0.000107573273017431	9.0851094286748e-05
17	26827152	26876322	3	gain	-	-1	germline	1	2.0216130783173e-11	2.07722727907367e-13
17	26876322	26879600	7	gain	-	-1	germline	1	0.0832687590938874	0.270044059696601
17	28777562	28813620	2	neutral	AA	56.1518	somatic	0	0.469892992774326	0.551390287460731
17	30059260	30128098	2	neutral	AA	39.9885	somatic	0	0.262608124152618	0.283696816266332
17	39411394	39424506	2	neutral	AA	55.8463	somatic	0	0.00305575121333714	0.0131231544579583
17	58109106	58118940	2	neutral	AA	36.3786	somatic	0	0.594957947967849	0.452368764433646
17	61724740	61813246	2	neutral	AA	100	somatic	0	0.311017887950323	0.421547179443632
17	64039008	64107846	2	neutral	AA	27.3302	somatic	0	0.116685156528149	0.102900303855614
17	64986350	65002740	2	neutral	AA	27.2839	somatic	0	0.872155439071796	0.851820273305456
17	66795806	66802362	6	gain	AAAAAA	5.47878	germline	1	0.0143074849587855	0.0366338751445161
17	70896584	70912974	2	neutral	AA	100	somatic	0	0.42459503139852	0.86633675497676
17	72329070	72388074	2	neutral	AA	36.3787	somatic	0	0.616392117623967	0.440637423941725
17	75364498	75384166	2	neutral	AA	54.5694	germline	1	0.610016213963702	0.531473326749458
17	75502174	75512008	2	neutral	AA	100	germline	1	0.0269176019245801	0.0733227076931314
17	75770970	75866032	2	neutral	AA	100	somatic	0	0.53530716652134	0.984346798402008
17	79888138	79894694	2	neutral	AA	5.52868	somatic	0	0.0385178598004157	0.0749871483427069
17	82897342	83120246	2	neutral	AA	49.8892	somatic	0	0.141551669002069	0.304836135215597
18	2065140	2071696	1	loss	A	-1	somatic	0	0.0144885728061689	0.0371083072807833
18	3258332	3284556	2	neutral	AA	100	somatic	0	0.0647963727467716	0.0327847988079149
18	3323892	3346838	2	neutral	AA	100	somatic	0	0.202705557792196	0.192942675991898
18	5061232	5087456	2	neutral	AA	100	somatic	0	0.9534150405584	0.910497740413626
18	5303804	5310360	1	loss	A	-1	germline	1	0.0145456691484197	0.0372533174553141
18	23309858	23699940	2	neutral	AA	92.0301	somatic	0	0.312265079375599	0.501615010631036
18	25561844	25620848	2	neutral	AA	100	germline	1	0.840501921522586	0.679482482071126
18	29446274	29465942	2	neutral	AA	54.5787	germline	1	0.0217083692958522	0.118310736944012
18	29593784	29629842	2	neutral	AA	37.556	somatic	0	0.803674542248298	0.658600101417462
18	29783908	29790464	1	loss	A	-1	somatic	0	0.0153082366431228	0.0395770237953006
18	31911330	31917886	2	neutral	AA	100	somatic	0	0.683150157098764	0.583812103114505
18	32639046	32648880	2	neutral	AA	18.1893	somatic	0	0.660416456410827	0.645088896796604
18	39191768	39195046	1	loss	A	-1	somatic	0	0.0835142882399184	0.270470232391009
18	40679980	40686536	1	loss	A	-1	germline	1	0.0143448839276279	0.0367085371360665
18	41283132	41289688	1	loss	A	-1	germline	1	0.0143176639583054	0.0366496036378509
18	41476534	41502758	2	neutral	AA	21.8288	somatic	0	0.548757218616472	0.347214127613269
18	42754954	42791012	2	neutral	AA	54.6088	somatic	0	0.330119929561301	0.153064757619398
18	44184162	44197274	1	loss	A	-1	germline	1	0.000535207616073595	0.000675176757487406
18	45892000	46262414	2	neutral	AA	100	somatic	0	0.39199562298491	0.638931235357134
18	50166512	50173068	1	loss	A	-1	germline	1	0.0149489794602676	0.038472568549422
18	56260314	56263592	1	loss	A	-1	somatic	0	0.0834785694324217	0.270408266799315
18	57279772	57283050	1	loss	A	-1	germline	1	0.0833035563131558	0.270104490329583
18	59980844	60030014	2	neutral	AA	100	somatic	0	0.572880522913221	0.604052041912706
18	64543820	64547098	1	loss	A	-1	germline	1	0.0834377630895023	0.27033746166511
18	66058256	66064812	1	loss	A	-1	germline	1	0.0143214157260014	0.0366556546313977
18	68834722	68939618	2	neutral	AA	18.3132	somatic	0	0.0659404906386312	0.220392914268543
18	70283598	70290154	1	loss	A	-1	somatic	0	0.0144149530600534	0.0368367809896587
18	76692088	76705200	2	neutral	AA	36.3786	germline	1	0.48784111757562	0.738114222897763
18	76924826	76970718	2	neutral	AA	4.3467	somatic	0	0.903621898677313	0.952221419313654
18	78816232	78901460	2	neutral	AA	100	somatic	0	0.21497165293713	0.440153846436292
18	79199758	79203036	4	gain	AABB	52.2137	germline	1	0.0832738506342817	0.270052902587358
18	79855358	79953698	2	neutral	AA	30.1392	somatic	0	0.217671234998644	0.128038710722442
19	914562	924396	2	neutral	AA	54.5678	somatic	0	0.091126498224363	0.174444088111438
19	7401724	7414836	2	neutral	AA	54.5678	somatic	0	0.0328533924999601	0.104797659356675
19	7447616	7450894	7	gain	AAAABBB	15.8104	germline	1	0.0832687590938874	0.270044059696601
19	7450894	7454172	4	gain	AABB	9.63845	germline	1	0.0832738506342817	0.270052902587358
19	8844044	8919438	2	neutral	AA	1.04341	somatic	0	0.231819433945807	0.341818696898086
19	8919438	8922716	1	loss	A	-1	somatic	0	0.0836002341405488	0.270619287296732
19	12584242	12587520	1	loss	A	-1	somatic	0	0.0833001609440458	0.270098594223578
19	14020006	14026562	2	neutral	AA	100	somatic	0	0.0338526812888842	0.0943469160163984
19	16144150	16153984	2	neutral	AA	36.3786	germline	1	0.487656708234238	0.723015490071578
19	21497124	21588908	2	neutral	AA	0.497484	germline	1	0.21774371368513	0.180494487801665
19	22768988	22949278	2	neutral	AA	97.3825	somatic	0	0.316029000112484	0.44828454492968
19	22955834	22962390	1	loss	A	-1	somatic	0	0.0144064641964681	0.0368513697128192
19	23116456	23129568	2	neutral	AA	54.5679	germline	1	0.647180401151051	0.933771612942317
19	24329316	24332594	3	gain	AAB	100	germline	1	0.0832806397471059	0.270064693437169
19	24332594	24335872	4	gain	AABB	9.48115	germline	1	0.0832738506342817	0.270052902587358
19	24335872	24404710	4	gain	AAAB	11.2369	somatic	0	4.36850351754703e-14	1.11022302462516e-16
19	27338520	27341798	5	gain	AAABB	12.4664	germline	1	0.0832738506342817	0.270052902587358
19	27345076	27371300	6	gain	AAAABB	0.188279	germline	1	9.63782512195528e-07	2.25159550892862e-07
19	27374578	27384412	5	gain	AAABB	0.800808	germline	1	0.00270041806373859	0.00495844564685122
19	27384412	27387690	6	gain	AAAABB	2.95967	germline	1	0.0832687590938874	0.270044059696601
19	27387690	27397524	6	gain	AAAABB	0.499217	germline	1	0.00270017411527641	0.00495795447728875
19	27397524	27400802	4	gain	AAAB	13.0436	germline	1	0.0832738506342817	0.270052902587358
19	29511834	29515112	1	loss	A	-1	somatic	0	0.0832831857800065	0.270069115102733
19	30796810	30800088	1	loss	A	-1	somatic	0	0.0832797910834836	0.270063219560398
19	31475356	31517970	2	neutral	AA	54.5915	somatic	0	0.470984527911252	0.6445644880691
19	32661992	32671826	2	neutral	AA	100	somatic	0	0.706107137068823	0.931275440580908
19	35353230	35376176	2	neutral	AA	19.9571	somatic	0	0.635246915004496	0.878566570976566
19	36139950	36146506	2	neutral	AA	54.5678	somatic	0	0.470975692420822	0.87704360227327
19	36349742	36356298	1	loss	A	-1	germline	1	0.0143314693764873	0.0366790600313597
19	41997736	42010848	2	neutral	AA	28.4544	somatic	0	0.23427609699843	0.525310763176557
19	47685066	47780128	2	neutral	AA	100	germline	1	0.00205584079054744	0.00798561959681199
19	51631778	51644890	1	loss	A	-1	germline	1	0.000533622042975146	0.000673396062956688
19	51677670	51690782	2	neutral	AA	36.3858	somatic	0	0.598653182993136	0.635409053087924
20	65560	68838	4	gain	-	-1	germline	1	0.0832746992488657	0.270054376423034
20	26315784	26322340	0	loss	-	-1	germline	1	0.0143096273753979	0.0366383107881532
20	28780840	28787396	9	gain	-	-1	germline	1	0.0143066816255072	0.0366330687143365
20	28803786	28823454	10	gain	-	-1	germline	1	2.20943287612743e-05	1.22912654521024e-05
20	28869346	28872624	8	gain	-	-1	germline	1	0.0832662134182593	0.270039638330487
20	28941462	28944740	4	gain	-	-1	germline	1	0.0832738506342817	0.270052902587358
20	29206980	29213536	1	loss	A	-1	somatic	0	0.014390307128718	0.0368550176832081
20	29262706	29265984	15	gain	-	-1	germline	1	0.0832653648737266	0.270038164553525
20	29265984	29269262	3	gain	-	-1	germline	1	0.0832831857800065	0.270069115102727
20	29285652	29292208	4	gain	-	-1	germline	1	0.0143094934660693	0.0366371010205605
20	29701958	29705236	4	gain	-	-1	somatic	0	0.0832738506342817	0.270052902587358
20	29875692	29888804	7	gain	-	-1	germline	1	0.0143069493988455	0.0366330687143365
20	29888804	29895360	4	gain	-	-1	germline	1	0.0143088239360073	0.0366354880514727
20	30147766	30167434	1	loss	A	-1	germline	1	0.00166275481318436	0.00336675749200221
20	30977100	31000046	3	gain	-	-1	somatic	0	0.000533277111343381	0.000673010826551579
20	31072162	31075440	36	gain	-	-1	germline	1	0.0832653648737266	0.270038164553525
20	31163946	31167224	5	gain	-	-1	germline	1	0.0832738506342817	0.270052902587358
20	31167224	31183614	3	gain	-	-1	germline	1	0.000108934213972375	9.36537747383559e-05
20	31183614	31190170	16	gain	-	-1	germline	1	0.0143066816255072	0.0366330687143365
20	31190170	31239340	3	gain	-	-1	somatic	0	0.000108698743607178	9.31737718270487e-05
20	31239340	31242618	51	gain	-	-1	germline	1	0.0832653648737266	0.270038164553525
20	31242618	31245896	3	gain	-	-1	germline	1	0.0832840344716515	0.270070589002989
20	43643292	43646570	0	loss	-	-1	somatic	0	0.0832772451346501	0.270058797965298
20	44646360	44666028	2	neutral	AA	100	somatic	0	0.82615178418984	0.911645163398745
20	49192946	49229004	2	neutral	AA	27.7395	somatic	0	0.000139767002948444	1.59423734734654e-05
20	60695448	60741340	2	neutral	AA	25.8186	somatic	0	0.165382677625909	0.438611768830468
20	63334238	63367018	2	neutral	AA	9.74424	somatic	0	0.379795045628691	0.7222873843705
21	0	10689558	7	gain	AAAAABB	-1	somatic	0	4.36359198480559e-14	1.11022302462516e-16
21	10689558	10692836	37	gain	AAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBB	100	germline	1	0.0832653648737266	0.270038164553525
21	10692836	10696114	19	gain	AAAAAAAAAAAAAABBBBB	100	germline	1	0.0832653648737266	0.270038164553525
21	10696114	10755118	7	gain	AAAAABB	0.257429	germline	1	9.13420269562116e-11	1.38400402249772e-12
21	14036396	14075732	2	neutral	AA	100	somatic	0	0.315472727534637	0.779577069982998
21	16193320	16219544	2	neutral	AA	54.8373	somatic	0	0.422466855277064	0.694113323665509
21	16970206	16973484	1	loss	A	-1	germline	1	0.0832814884177338	0.270066167319823
21	18707546	18714102	2	neutral	AA	62.232	germline	1	0.966962608591024	0.97697871158102
21	19727004	19759784	2	neutral	AA	54.5679	somatic	0	0.467291341201564	0.489297755756609
21	20585840	20589118	1	loss	A	-1	germline	1	0.0832865805886212	0.270075010739013
21	21382394	21395506	2	neutral	AA	37.556	somatic	0	0.391426415668788	0.605481981324404
21	24293258	24296536	2	neutral	AA	100	germline	1	0.173837465186244	0.403051252909862
21	28849678	28866068	2	neutral	AA	54.5678	somatic	0	0.937551685316398	0.756065395913606
21	30154322	30157600	2	neutral	AA	100	germline	1	0.398402641907326	0.63766409913245
21	31740874	31783488	2	neutral	AA	100	somatic	0	0.224165381713257	0.0345867921292106
21	31783488	31786766	3	gain	AAB	27.3211	somatic	0	0.0832806397471059	0.270064693437169
21	31786766	31947388	2	neutral	AA	53.9933	somatic	0	0.00430199843946055	0.00374507083314679
21	41804334	41807612	4	gain	AAAA	12.5313	germline	1	0.0832738506342817	0.270052902587358
21	43335160	43338438	3	gain	AAA	27.3778	germline	1	0.0832772451346501	0.270058797965291
21	44259556	44262834	1	loss	A	100	somatic	0	0.0847481603115353	0.27260400383234
21	45223288	45295404	2	neutral	AA	10.7984	somatic	0	0.805050688171225	0.720897769073987
21	45967394	45970672	1	loss	A	-1	somatic	0	0.0833035563131558	0.270104490329583
22	10725616	10728894	8	gain	-	-1	germline	1	0.0832687590938874	0.270044059696601
22	11627066	11630344	4	gain	AAAB	99.4753	germline	1	0.0832738506342817	0.270052902587358
22	17796262	17874934	2	neutral	AA	50.3921	somatic	0	0.152545238125274	0.153181400244774
22	17874934	17878212	4	gain	AAAA	2.42508	germline	1	0.0832738506342817	0.270052902587358
22	18730492	18733770	11	gain	AAAAAAABBBB	16.874	germline	1	0.0832653648737266	0.270038164553525
22	19074682	19117296	2	neutral	AA	53.1557	somatic	0	0.444139611270037	0.552510760165074
22	22687038	22696872	2	neutral	AA	27.2839	germline	1	0.531837983749917	0.546779263066163
22	23037784	23054174	2	neutral	AA	100	germline	1	0.365182839001504	0.849404842170007
22	23136124	23139402	1	loss	A	-1	somatic	0	0.0833782828008863	0.270234228430603
22	24483382	24565332	2	neutral	AA	100	somatic	0	0.333870721874326	0.397417054130106
22	26541966	26548522	2	neutral	AA	100	somatic	0	0.750588291422346	0.56250216905452
22	29118474	29121752	4	gain	AABB	26.1989	germline	1	0.0832738506342817	0.270052902587358
22	29423328	29429884	2	neutral	AA	54.5678	somatic	0	0.161276442055234	0.350100783819212
22	33127468	33130746	2	neutral	AA	100	somatic	0	0.63698115140195	0.813008942683925
22	35507296	35520408	2	neutral	AA	54.5678	somatic	0	0.266167363653498	0.33910190805925
22	36746380	36752936	1	loss	A	-1	germline	1	0.0143417976005208	0.0366859227121792
22	42548440	42551718	3	gain	AAB	11.7648	somatic	0	0.0832840344716515	0.270070589002989
22	47393324	47403158	2	neutral	AA	18.2428	somatic	0	0.290018385759057	0.523505053402738
22	47855522	47858800	2	neutral	AA	100	somatic	0	0.571049580907839	0.770784907971924
22	48832366	48861868	2	neutral	AA	31.777	somatic	0	0.185210091253782	0.548415520209179
22	50363192	50418918	2	neutral	AA	11.76	somatic	0	0.0346970161981766	0.102113470247613
22	50641822	50645100	4	gain	AAAA	18.8856	germline	1	0.0832738506342817	0.270052902587358
X	0	2783022	2	gain	AB	-1	somatic	0	NA	NA
X	2783022	4441690	2	gain	AB	0.117136	germline	1	1.57672412052191e-14	1.19210641358336e-10
X	4444968	5136626	2	gain	AB	0.462795	germline	1	5.77278049931982e-05	0.000160852092939812
X	5136626	5139904	0	loss	-	-1	germline	1	0.0832780937772558	0.27006027182446
X	5139904	5221854	2	gain	AB	16.1533	germline	1	0.118207633118604	0.137250928586268
X	5221854	5225132	2	gain	-	-1	germline	1	0.590876620998892	0.784023145971243
X	5225132	5425090	2	gain	AB	18.3409	germline	1	0.0842455591063933	0.411939065298834
X	5425090	5438202	2	gain	-	-1	germline	1	0.687850141664519	0.710835013425491
X	5438202	6900190	2	gain	AB	0.100825	germline	1	0.000767231748271252	0.00206459977944196
X	6900190	9630764	2	gain	AB	0.0837332	germline	1	0.241748240861936	0.185845848563638
X	9630764	9640598	2	gain	AB	100	germline	1	0.491958563255861	0.575304776948978
X	9640598	9663544	2	gain	-	-1	germline	1	0.834351506260616	0.941842463111723
X	9663544	9860224	2	gain	AB	1.63814	germline	1	0.95282700513355	0.969918305688479
X	9860224	9902838	2	gain	-	-1	germline	1	0.411829959509178	0.740234711059096
X	9902838	12748142	2	gain	AB	0.123117	germline	1	0.000886609089871451	0.0140539243359586
X	12748142	12754698	2	gain	-	-1	germline	1	0.118649688256081	0.32990214158498
X	12754698	12780922	2	gain	AA	36.6697	germline	1	0.0524185566570751	0.0512177363096196
X	12780922	12810424	2	gain	-	-1	germline	1	0.242431232477834	0.519634526265995
X	12810424	13354572	2	gain	AB	0.410792	germline	1	0.520134927150058	0.681091292206967
X	13354572	13367684	2	gain	-	-1	germline	1	0.344811414024817	0.599871310049239
X	13367684	13390630	2	gain	AA	54.5678	germline	1	0.114651827671561	0.130027850823467
X	13390630	13413576	2	gain	-	-1	germline	1	0.47729418631929	0.771360548442209
X	13413576	14754278	2	gain	AB	0.230622	germline	1	0.745401289490066	0.827935042693468
X	14754278	15039464	2	gain	-	-1	germline	1	0.86363336971149	0.994981756460986
X	15039464	19779452	2	gain	AB	0.103875	somatic	0	0.195284232665328	0.282009470980361
X	19779452	19786008	2	gain	AB	-1	germline	1	0.884651236675519	0.930746563319435
X	19786008	19871236	2	gain	AA	36.8237	germline	1	0.364904848559925	0.197776170334009
X	19871236	19894182	2	gain	-	-1	germline	1	0.0724817633914294	0.236298219991185
X	19894182	23657326	2	gain	AB	0.054468	germline	1	0.000416205423460633	0.00255420835606257
X	23657326	24024462	2	gain	AB	0.265791	germline	1	1.88793433095871e-07	1.96729638349824e-05
X	24024462	24034296	2	gain	-	-1	germline	1	0.00807040550434084	0.0100988735450235
X	24034296	24112968	2	gain	AA	50.9267	germline	1	0.0463908324093929	0.0370399554612019
X	24112968	24116246	2	gain	AB	49.3619	germline	1	0.0926994779456687	0.286055436309053
X	24116246	24607946	2	gain	AB	4.53406	germline	1	0.529212400066968	0.628819688731593
X	24607946	24614502	2	gain	-	-1	germline	1	0.290965987841721	0.632197579666294
X	24614502	24811182	2	gain	AB	39.35	germline	1	0.888537955871353	0.493419899569654
X	24811182	29888804	2	gain	AB	0.0472465	germline	1	0.0629841754546782	0.0983277655936963
X	29888804	29915028	2	gain	AA	70.8261	germline	1	0.602347136404059	0.823013798336265
X	29915028	29931418	2	gain	-	-1	germline	1	0.694421744223026	0.991991956426826
X	29931418	30786976	2	gain	AB	0.321253	germline	1	0.0522292611523488	0.195553467985659
X	30786976	30806644	3	gain	AAB	4.16647	germline	1	5.19638176214817e-05	6.88001192691301e-05
X	30806644	33845350	2	gain	AB	0.064114	germline	1	0.448286050308833	0.473777320684252
X	33845350	33858462	2	gain	-	-1	germline	1	0.165603155379549	0.399892907662646
X	33858462	33943690	2	gain	AB	100	germline	1	0.609326030095877	0.44224597400743
X	33943690	33946968	2	gain	-	-1	germline	1	0.153728820758601	0.376681649119283
X	33946968	34202652	2	gain	AB	10.0636	germline	1	0.105794328459176	0.178155833962727
X	34202652	34245266	2	gain	-	-1	germline	1	0.371566545123307	0.281221008588493
X	34245266	41253630	2	gain	AB	0.0363539	somatic	0	0.0298078027793319	0.0256495513647306
X	41253630	41653546	2	gain	AB	0.543272	germline	1	1.5380549410232e-06	3.07645926017619e-05
X	41653546	44413622	2	gain	AB	0.0934005	somatic	0	9.9256187142813e-12	8.71049898876208e-10
X	44413622	45203620	2	gain	AB	0.375157	somatic	0	0.000206607427443779	0.000348784942555302
X	45203620	45980506	2	gain	AB	0.245542	germline	1	1.76174842561072e-05	6.13970151381871e-05
X	45980506	45987062	2	gain	AA	21.8271	germline	1	0.757975255069303	0.859397078516453
X	45987062	46006730	2	gain	-	-1	germline	1	0.971583450585569	0.905273665581158
X	46006730	50225516	2	gain	AB	0.102476	somatic	0	0.285373261551859	0.440816341065304
X	50225516	50228794	0	loss	-	-1	germline	1	0.0832763964990499	0.270057324112007
X	50228794	50281242	2	gain	AB	-1	somatic	0	NA	NA
X	50281242	51077796	2	gain	AB	0.387023	germline	1	0.00825108142719979	0.0146665784958729
X	51077796	51081074	2	gain	AB	-1	germline	1	NA	NA
X	51081074	51199082	2	gain	AA	100	germline	1	0.0137051770448613	0.0887081639037997
X	51199082	51254808	2	gain	-	-1	germline	1	0.0349945159453534	0.17575567498047
X	51254808	52241486	2	gain	AB	2.46408	germline	1	0.00809693961966038	0.0865572774313474
X	52241486	52352938	2	gain	AB	17.4645	germline	1	0.0693270193708953	0.0610255950407564
X	52352938	52579120	2	gain	-	-1	germline	1	0.678666864249181	0.702722987180063
X	52579120	53142936	2	gain	AB	0.702111	germline	1	0.00115310610706427	0.0142803380076433
X	53142936	53159326	2	gain	AB	-1	germline	1	0.471663402945006	0.718777174661506
X	53159326	53172438	2	gain	AA	62.8863	germline	1	0.141504500819618	0.259303959842582
X	53172438	53178994	2	gain	-	-1	germline	1	0.203763413631626	0.307998109069084
X	53178994	54614758	2	gain	AB	0.553488	somatic	0	0.00930066167822599	0.0650615365297675
X	54614758	57430560	2	gain	AB	0.0900982	somatic	0	1.30553327192325e-13	1.37190814264443e-10
X	57430560	57456784	2	gain	-	-1	germline	1	0.323278873021219	0.783530847628767
X	57456784	58286118	2	gain	AB	1.24195	germline	1	1.22187098466606e-05	0.00226723311126364
X	58286118	58459852	2	gain	AB	4.07378	germline	1	6.41409626926554e-07	3.04532092110232e-05
X	58459852	58472964	2	gain	AA	-1	germline	1	0.0910377672749576	0.283290157501139
X	58472964	62672082	2	gain	AA	1.18462	somatic	0	2.33149659886914e-14	2.22392104731739e-11
X	62672082	62819592	2	gain	AB	7.46457	somatic	0	5.48737462576616e-09	1.50620801719903e-07
X	62819592	62826148	2	gain	AB	-1	germline	1	NA	NA
X	62826148	63363740	2	gain	AB	6.77423	germline	1	0.020861185437163	0.0707497153662041
X	63363740	63393242	2	gain	AA	72.3092	germline	1	0.248192454719851	0.35197608458071
X	63393242	63416188	2	gain	-	-1	germline	1	0.223088630809966	0.491001042069037
X	63416188	66300828	2	gain	AB	3.50285	somatic	0	5.90108511754044e-08	9.78017481212401e-06
X	66300828	66310662	2	gain	-	-1	germline	1	0.747442790059937	0.919675656210251
X	66310662	68257794	2	gain	AB	0.0909223	somatic	0	1.13112436154685e-05	2.55280092055221e-05
X	68257794	68654432	2	gain	AB	0.693508	somatic	0	3.08819245639164e-05	8.58119617482833e-05
X	68654432	69860736	2	gain	AB	0.161459	germline	1	6.98963137897935e-11	2.52202117412281e-07
X	69860736	69962354	2	gain	AB	1.54291	germline	1	0.934958790527197	0.972752962180532
X	69962354	69975466	2	gain	-	-1	germline	1	0.637508415479561	0.811333147946344
X	69975466	70018080	2	gain	AA	100	germline	1	0.857486728286818	0.782792109539857
X	70018080	70027914	2	gain	-	-1	germline	1	0.659856352090528	0.827379630644423
X	70027914	72414298	2	gain	AB	0.135558	somatic	0	0.0342041793192864	0.130457252139598
X	72414298	77616484	2	gain	AB	0.05011	somatic	0	3.55027116649885e-22	1.87294624254264e-13
X	77616484	77865612	2	gain	AB	12.9061	somatic	0	0.0159648241090603	0.0826259953274504
X	77865612	77868890	0	loss	-	-1	germline	1	0.0832772451346501	0.270058797965298
X	77868890	78127852	2	gain	AB	6.4487	germline	1	0.0496143580381034	0.0489960181454001
X	78127852	78750672	2	gain	AB	7.20673	somatic	0	6.65822968038659e-07	3.54548257751608e-05
X	78750672	78875236	2	gain	-	-1	germline	1	0.743566161558609	0.544327511109634
X	78875236	79065360	2	gain	AB	35.8851	germline	1	0.0190764175069662	0.0396276107031807
X	79065360	79088306	2	gain	-	-1	germline	1	0.962958053453333	0.977288168216215
X	79088306	79665234	2	gain	AB	0.425216	germline	1	6.556927862558e-05	0.00116353638882316
X	79671790	81005936	2	gain	AB	0.218215	germline	1	0.0111436774857468	0.0279136470970598
X	81005936	81009214	2	gain	-	-1	germline	1	0.0941355439487065	0.28843638927683
X	81009214	82726886	2	gain	AB	0.772049	somatic	0	7.60654688052366e-05	0.000874835108256811
X	82726886	82730164	2	gain	AB	-1	germline	1	NA	NA
X	82730164	82733442	0	loss	-	-1	somatic	0	0.0832780937772558	0.27006027182446
X	82733442	83490660	2	gain	AB	2.33594	germline	1	0.630196323725321	0.91696315556513
X	83490660	83507050	2	gain	-	-1	germline	1	0.362091734524453	0.753162648374685
X	83507050	83510328	2	gain	AA	100	germline	1	0.234985430247163	0.476323365537334
X	83510328	83520162	2	gain	-	-1	germline	1	0.190461646219593	0.168536073678922
X	83520162	93157482	2	gain	AB	0.0277883	germline	1	7.70935283022099e-07	2.51375110171814e-06
X	93157482	93164038	2	gain	-	-1	germline	1	0.0922980954462728	0.179550516926323
X	93164038	93200096	2	gain	AB	31.3264	germline	1	0.266503121231586	0.429109816690377
X	93200096	93206652	2	gain	-	-1	germline	1	0.80059569110743	0.809223052071293
X	93206652	93541008	2	gain	AB	0.329303	germline	1	0.248939236810278	0.175080873604263
X	93547564	97294318	2	gain	AB	0.11184	germline	1	0.17518613074166	0.322695126352288
X	97294318	97468052	2	gain	AB	18.3791	germline	1	0.833541867206493	0.369381350229299
X	97468052	97477886	2	gain	-	-1	germline	1	0.396382827340437	0.597495013779899
X	97477886	98123652	2	gain	AB	0.426589	somatic	0	0.0110035651329007	0.0633074355410898
X	98123652	98208880	2	gain	-	-1	germline	1	0.496238197535864	0.542849046858626
X	98208880	98379336	2	gain	AA	53.997	germline	1	0.664105091929192	0.875943175323546
X	98379336	99300454	2	gain	AB	0.306332	germline	1	0.00899472163323152	0.0313316966742083
X	99300454	99320122	2	gain	-	-1	germline	1	0.789998823055988	0.770813937348492
X	99320122	99395516	2	gain	AA	36.3786	germline	1	0.543000521996437	0.454223138093286
X	99395516	99398794	2	gain	-	-1	germline	1	0.302098602735236	0.547591506489838
X	99398794	101624556	2	gain	AB	0.162753	somatic	0	0.0864103215488444	0.196842866704816
X	101624556	101654058	2	gain	-	-1	germline	1	0.581691962965778	0.674317601934603
X	101654058	101670448	2	gain	AA	100	germline	1	0.481634298282031	0.599583610159013
X	101670448	101693394	2	gain	-	-1	germline	1	0.893051280636196	0.958796587027033
X	101693394	102093310	2	gain	AB	3.32194	germline	1	0.0825105607183976	0.21337922148165
X	102093310	102496504	2	gain	AA	100	germline	1	0.0100132137320586	0.00664324850684672
X	102496504	102506338	2	gain	-	-1	germline	1	0.546287050306334	0.78666012713112
X	102506338	107298774	2	gain	AB	0.129756	germline	1	0.000134248214117488	6.60888456898157e-05
X	107298774	107406948	2	gain	-	-1	germline	1	0.334120617407345	0.797994591164808
X	107406948	107656076	2	gain	AA	15.8263	germline	1	0.21621507468534	0.326150837312491
X	107656076	108770596	2	gain	AB	2.0695	somatic	0	0.000108449349470796	0.000806684830836346
X	108777152	109259018	2	gain	AB	10.0236	somatic	0	0.000706005345261623	0.00400724616734782
X	109259018	109275408	2	gain	AA	33.5135	germline	1	0.294795488288954	0.350035400358856
X	109275408	115372488	2	gain	AB	0.0526325	somatic	0	2.41269566527713e-06	7.60834381821063e-05
X	115372488	115401990	2	gain	AB	100	germline	1	0.184878026609843	0.430531055713663
X	115405268	115634728	2	gain	AB	15.5278	germline	1	0.0101853356591494	0.02495079656526
X	115634728	115703566	2	gain	-	-1	germline	1	0.0275772952706169	0.0408835133280813
X	115703566	116142818	2	gain	AB	0.587104	somatic	0	0.00527612054571768	0.0362702389334427
X	116142818	116169042	2	gain	-	-1	germline	1	0.74547724742751	0.832338907159608
X	116169042	119466710	2	gain	AB	0.0564052	somatic	0	0.0775418704455237	0.251745344397118
X	119466710	119601108	2	gain	AA	3.38527	somatic	0	0.101504171875863	0.114513642334027
X	119601108	119617498	2	gain	-	-1	germline	1	0.416246251462887	0.750612827013129
X	119617498	119738784	2	gain	AB	0.91325	germline	1	0.646221455723247	0.851386867065454
X	119745340	120276376	2	gain	AB	0.314683	germline	1	0.222086822692353	0.0737339861315478
X	120276376	120292766	2	gain	-	-1	germline	1	0.900333258444715	0.680865907342469
X	120292766	120299322	2	gain	AA	100	germline	1	0.193813968193295	0.606173370246794
X	120299322	120322268	2	gain	-	-1	germline	1	0.760326880432644	0.957226758276061
X	120322268	120843470	2	gain	AB	0.328853	somatic	0	0.921898172805297	0.100722759712117
X	120843470	120990980	2	gain	-	-1	germline	1	0.215969983318887	0.197334890235981
X	120990980	121492514	2	gain	AB	1.47086	germline	1	0.0157235110635053	0.0551080321249607
X	121492514	121499070	2	gain	-	-1	germline	1	0.649059144704704	0.73319045767181
X	121499070	125272048	2	gain	AB	0.0594588	somatic	0	0.152863468806555	0.575836072570691
X	125272048	125281882	0	loss	-	-1	germline	1	0.0143135112268157	0.0366528307256428
X	125281882	125462172	2	gain	AB	1.10862	germline	1	0.78010699858038	0.602129891047986
X	125462172	125531010	2	gain	-	-1	germline	1	0.955270596551153	0.990918259506451
X	125531010	126776650	2	gain	AB	0.130849	germline	1	0.53435462161576	0.383643114296969
X	126779928	133647338	2	gain	AB	0.044758	germline	1	9.89026773942186e-06	0.000115473304174718
X	133647338	133689952	2	gain	-	-1	germline	1	0.435742069475916	0.670366641268092
X	133689952	133850574	2	gain	AA	36.3915	somatic	0	0.159634197166604	0.355514264419245
X	133850574	133860408	2	gain	-	-1	germline	1	0.39756303970226	0.794216612912919
X	133860408	134548788	2	gain	AB	0.617396	germline	1	0.070142337126483	0.198416873830448
X	134548788	134870032	2	gain	AB	73.8606	germline	1	0.0213336156756747	0.0802157215552035
X	134870032	139462510	2	gain	AB	0.076596	germline	1	2.2342844568594e-08	5.89252482052771e-06
X	139462510	139482178	2	gain	-	-1	germline	1	0.494299497928126	0.642519078601007
X	139482178	139501846	2	gain	AA	100	germline	1	0.563776419213833	0.483522174070529
X	139505124	139541182	2	gain	AB	15.5327	germline	1	0.840141971134011	0.995327446940018
X	139541182	139639522	2	gain	-	-1	germline	1	0.2142283597719	0.749816410674794
X	139639522	139669024	2	gain	AB	10.7599	germline	1	0.565520881046767	0.704509655381553
X	139669024	139675580	2	gain	-	-1	germline	1	NA	NA
X	139675580	139734584	2	gain	AB	5.26284	germline	1	0.586859870810105	0.564023025995756
X	139734584	139744418	2	gain	-	-1	germline	1	0.99170853191601	0.855668854993354
X	139744418	140721262	2	gain	AB	0.408152	somatic	0	0.864273304423995	0.946951787552909
X	140721262	140727818	3	gain	AAB	7.82758	germline	1	0.01435280370667	0.0367538025744397
X	140727818	141786612	2	gain	AB	0.175202	germline	1	0.682747987190826	0.522054126180581
X	141793168	144569634	2	gain	AB	0.0684034	germline	1	0.52351752461299	0.276936082476639
X	144569634	144595858	2	gain	AA	100	germline	1	0.742612939658469	0.837657721320898
X	144595858	144599136	2	gain	-	-1	germline	1	0.368326389518997	0.610897374717456
X	144599136	145054778	2	gain	AB	0.390976	germline	1	0.96367852693049	0.769584377160751
X	145054778	145084280	2	gain	AB	66.8935	germline	1	0.365143184454167	0.321335838204182
X	145084280	145087558	2	gain	-	-1	germline	1	0.566836498897428	0.768025393540391
X	145087558	145339964	2	gain	AB	0.721507	germline	1	0.679611704861805	0.836495923065627
X	145343242	146579048	2	gain	AB	0.123152	germline	1	0.511401415563799	0.834615061891005
X	146579048	146641330	2	gain	-	-1	germline	1	0.200802321170241	0.245450716198965
X	146641330	148401616	2	gain	AB	0.172227	somatic	0	0.06860808545594	0.158081218138063
X	148401616	148408172	2	gain	-	-1	germline	1	0.482072518560275	0.49626636537309
X	148408172	148634354	2	gain	AB	61.6377	germline	1	0.774982060946186	0.498429839323967
X	148634354	148647466	2	gain	-	-1	germline	1	0.117994468596409	0.380779714449119
X	148647466	148991656	2	gain	AB	1.4161	germline	1	0.323558508545354	0.172174046288776
X	148991656	149017880	2	gain	-	-1	germline	1	0.486889179380589	0.52757726661601
X	149017880	149129332	2	gain	AA	100	germline	1	0.00931213140068405	0.0812921728005056
X	149129332	149149000	2	gain	-	-1	germline	1	0.850190065107785	0.835865674423674
X	149149000	149994724	2	gain	AB	0.773032	germline	1	0.000203637140708185	0.0040425983107063
X	149994724	149998002	2	gain	-	-1	germline	1	0.510478103151859	0.727868877443296
X	149998002	150011114	2	gain	AA	54.8471	germline	1	0.637330603577365	0.985839320620361
X	150011114	150017670	2	gain	-	-1	germline	1	0.997145600467627	0.957640402626095
X	150017670	151538662	2	gain	AB	0.151029	germline	1	0.174401775915265	0.130337857032982
X	151545218	155560768	2	gain	AB	0.0645911	germline	1	7.86909685618864e-08	6.38838644617667e-06
X	155567324	155573880	2	gain	AB	-1	germline	1	NA	NA
X	155573880	155698444	2	gain	AB	1.63703	germline	1	0.100022528270091	0.187748142842307
X	155698444	156040895	2	gain	AB	-1	somatic	0	NA	NA
Y	0	3845094	0	loss	-	-1	somatic	0	NA	NA
Y	3851650	10666612	0	loss	-	-1	somatic	0	1.43570168542161e-17	0
Y	10666612	10807566	3	gain	-	-1	somatic	0	0.00462663683041278	1.0685649676212e-07
Y	10984578	10991134	9	gain	-	-1	germline	1	0.0143078866403461	0.0366366977724637
Y	10991134	11017358	2	gain	-	-1	somatic	0	0.703757512517946	0.0996974897692983
Y	11292710	11335324	20	gain	AAAAAAAAAAAAABBBBBBB	3.23475	somatic	0	4.32178743090066e-08	4.12434952856700e-09
Y	11486112	11532004	0	loss	-	-1	somatic	0	9.14724540155209e-11	1.38844491459622e-12
Y	11643456	11646734	15	gain	-	-1	germline	1	0.0832653648737266	0.270038164553525
Y	11646734	11686070	0	loss	-	-1	germline	1	9.22720251094437e-09	5.58687873741803e-10
Y	11686070	11692626	4	gain	AAAB	100	germline	1	0.014325436439406	0.0366879413614922
Y	11692626	11718850	0	loss	-	-1	germline	1	6.17994986230996e-05	9.58074792667407e-06
Y	11718850	11725406	20	gain	AAAAAAAAAAAAABBBBBBB	29.3471	germline	1	0.0143061460920934	0.0366314559005733
Y	56827408	56843798	17	gain	AAAAAAAAAAABBBBBB	2.49942	germline	1	0.000107528107396559	9.08210998683545e-05
