chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	5667294	5677116	3	gain	-	-1	germline	1	0.00277424233962068	0.00517293945201158
1	16612276	16631920	8	gain	-	-1	germline	1	0.00270024764012509	0.00495808715061874
1	16720318	16723592	5	gain	-	-1	germline	1	0.083270155900831	0.270046522894905
1	16903662	16942950	3	gain	-	-1	germline	1	9.99049495160302e-07	2.57650851098745e-07
1	31430400	31433674	5	gain	-	-1	germline	1	0.083270155900831	0.270046522894905
1	55661274	55667822	1	loss	A	-1	germline	1	0.0143151599675303	0.0366586236735399
1	72289920	72299742	1	loss	A	-1	germline	1	0.00273502991821933	0.00505018363973764
1	105471910	105481732	1	loss	A	-1	germline	1	0.00271378134950568	0.00499215787667817
1	125070074	125073348	3	gain	-	-1	germline	1	0.0832943288846251	0.270088503766331
1	125079896	125083170	10	gain	-	-1	germline	1	0.0832677389150395	0.270042325069752
1	125155198	125161746	3	gain	-	-1	germline	1	0.0186064401481966	0.049800074147663
1	125161746	125165020	5	gain	-	-1	germline	1	0.083270155900831	0.270046522894905
1	152584770	152614236	1	loss	A	-1	germline	1	2.04646794226285e-07	3.06935969973665e-08
1	157050506	157053780	2	neutral	AA	100	somatic	0	0.107970569474486	0.31061334591054
1	158199680	158225872	2	neutral	AA	58.5911	somatic	0	0.209143339476315	0.155894964114588
1	160979306	160992402	2	neutral	AA	27.284	somatic	0	0.230356259502751	0.351071499321081
1	163650890	163736014	2	neutral	AA	100	somatic	0	0.514009348751442	0.85878100139859
1	165661126	165670948	2	neutral	AA	100	somatic	0	0.197772421791189	0.60085280669681
1	169259252	169272348	1	loss	A	-1	germline	1	0.000534631540791615	0.000674932968789843
1	170421522	170437892	2	neutral	AA	27.2839	somatic	0	0.177204324788479	0.22820232626915
1	179379186	179382460	2	neutral	AA	100	somatic	0	0.349037073438824	0.593082784353468
1	183193396	183275246	2	neutral	AA	36.4277	somatic	0	0.0678513900647836	0.0388153340603908
1	187302266	187315362	2	neutral	AA	45.6545	germline	1	0.422965079817881	0.610723341922585
1	187495432	187498706	1	loss	A	-1	somatic	0	0.0832786157986553	0.270061915328008
1	187747530	187754078	1	loss	A	-1	germline	1	0.0143258467711898	0.0366831464398808
1	201115272	201118546	2	neutral	AA	100	somatic	0	0.237901516497485	0.479545091910112
1	201242958	201347726	2	neutral	AA	20.1462	somatic	0	0.0345775661629735	0.00976960538641158
1	201442672	201445946	2	neutral	AA	100	somatic	0	0.607706580146966	0.794820930201444
1	202162952	202185870	2	neutral	AA	39.1023	somatic	0	0.967103910877055	0.889374571862708
1	202752272	202755546	2	neutral	AA	100	somatic	0	0.216069173056381	0.454620001287405
1	205558090	205581008	2	neutral	AA	100	somatic	0	0.166400078241817	0.195844631225749
1	211906376	212037336	2	neutral	AA	36.379	somatic	0	0.0095992663567537	0.0109026268293598
1	212210858	212227228	2	neutral	AA	54.5678	somatic	0	0.285881645274667	0.213045221958817
1	214499384	214571412	2	neutral	AA	100	somatic	0	0.174372801251148	0.51794970933303
1	219829456	219836004	2	neutral	AA	54.5678	somatic	0	0.482494379729766	0.912032200680201
1	222599260	222625452	2	neutral	AA	100	somatic	0	0.423839557942992	0.524582184452099
1	222956126	222998688	2	neutral	AA	54.6222	somatic	0	0.563951882989635	0.422187899120788
1	224439248	224481810	2	neutral	AA	100	somatic	0	0.272394535930341	0.619807041945466
1	228849326	228875518	2	neutral	AA	36.3786	somatic	0	0.155228296221613	0.432921810784827
1	233128444	233446022	2	neutral	AA	69.5587	germline	1	0.928209194977731	0.602177270474209
1	234775266	234781814	7	gain	AAAAABB	3.40972	germline	1	0.0143076579651592	0.0366337324210828
1	236094688	236097962	5	gain	AAAAB	11.2216	germline	1	0.083270155900831	0.270046522894905
1	239421072	239424346	2	neutral	AA	100	somatic	0	0.566953638093574	0.768050775205553
1	239849966	239859788	2	neutral	AA	54.5696	somatic	0	0.0514306054954672	0.0745558587351205
1	240183914	240187188	4	gain	AABB	6.25327	germline	1	0.0832790186682985	0.270061915328006
1	244129084	244138906	2	neutral	AA	54.5679	somatic	0	0.819450352623012	0.969907215837791
1	247373618	247396536	2	neutral	AA	46.8683	somatic	0	0.00089438100568769	0.012745676147447
1	248670122	248689766	2	neutral	AA	54.5678	somatic	0	0.00937117070695162	0.0306002650478766
1	248843644	248879658	3	gain	AAB	40.005	somatic	0	1.0699188702894e-08	8.26294477285217e-10
1	248879658	248918946	3	gain	-	-1	somatic	0	4.70204569899582e-08	5.64616964293663e-09
2	13096	29466	3	gain	-	-1	somatic	0	0.000164412035782579	0.000323744627114708
2	2979340	3071012	2	neutral	AA	9.54586	somatic	0	0.000279481581658127	0.000578980521211636
2	3179054	3182328	5	gain	AAAAA	19.083	germline	1	0.083270155900831	0.270046522894905
2	8666278	8672826	2	neutral	AA	36.3786	somatic	0	0.484275768785806	0.601285356580253
2	19909194	19987770	2	neutral	AA	55.6485	somatic	0	0.000543593997874258	0.00333849215072612
2	20161292	20177662	2	neutral	AA	100	somatic	0	0.527911632323214	0.603470215852956
2	25861326	25972642	2	neutral	AA	80.6342	somatic	0	0.991665859269617	0.895683883354999
2	32913522	32916796	5	gain	AAAAA	72.135	germline	1	0.083270155900831	0.270046522894905
2	35752080	35765176	1	loss	A	-1	germline	1	0.000533127548295522	0.000672820856988943
2	39193054	39274904	2	neutral	AA	54.5678	somatic	0	0.529761215591204	0.891441573246049
2	41013398	41023220	1	loss	A	-1	germline	1	0.00270512703806913	0.00496765523367082
2	42522712	42676590	2	neutral	AA	23.3832	germline	1	0.11137002689343	0.204650083491371
2	42715878	42778084	2	neutral	AA	36.3857	somatic	0	0.177132985494467	0.434285431550553
2	52521508	52557522	1	loss	A	-1	germline	1	4.34856225374761e-08	4.15604328729557e-09
2	65090394	65113312	2	neutral	AA	54.5678	somatic	0	0.376486841543928	0.329538990765579
2	68128666	68272722	2	neutral	AA	13.7479	somatic	0	0.659193256527013	0.792914896875552
2	72604224	72856322	2	neutral	AA	23.4049	somatic	0	0.829909220437787	0.395886999840766
2	89773080	89786176	6	gain	-	-1	germline	1	0.00053213752149101	0.000671037447963263
2	89789450	89795998	3	gain	-	-1	germline	1	0.016038012565912	0.0418699449162002
2	89795998	89802546	5	gain	AAABB	24.5765	germline	1	0.0143076579651592	0.0366337324210828
2	89802546	89822190	5	gain	AAAAA	4.0084	germline	1	0.000107546009711484	9.08223984968926e-05
2	89822190	89825464	4	gain	AAAB	100	germline	1	0.0832790186682985	0.270061915328006
2	89825464	89835286	20	gain	AAAAAAAAAAAAABBBBBBB	4.43374	germline	1	0.0026999928809593	0.00495777627725336
2	89835286	89841834	30	gain	AAAAAAAAAAAAAAAAAAABBBBBBBBBBB	15.57	germline	1	0.0143066410115508	0.0366322011348161
2	89841834	89851656	4	gain	AABB	10.1502	germline	1	0.00270078038936039	0.00495863122200502
2	91410080	91413354	4	gain	-	-1	germline	1	0.0832733786369578	0.270052120069208
2	109197722	109200996	12	gain	AAAAAAAAAAAB	27.5253	germline	1	0.083266933265738	0.270040925805286
2	117038952	117045500	1	loss	A	-1	germline	1	0.0144613100143742	0.0370991380264936
2	119497726	119671248	2	neutral	AA	67.9691	germline	1	0.892072000738203	0.751784523251139
2	131487114	132243408	2	neutral	AA	9.14135	somatic	0	0.251194615314489	0.353714376084144
2	132243408	132246682	4	gain	AABB	1.51597	germline	1	0.0832725729434541	0.270050720767694
2	132246682	132269600	2	neutral	AA	-1	somatic	0	NA	NA
2	132269600	132380916	2	neutral	AA	1.79199	somatic	0	0.586338438587143	0.984344848390238
2	146105524	146118620	1	loss	A	-1	germline	1	0.000533167902476738	0.00067304585334016
2	147735976	147742524	2	neutral	AA	100	somatic	0	0.102296250970162	0.135669009215928
2	151232608	151304636	2	neutral	AA	54.5678	somatic	0	0.535188278545215	0.743964934684207
2	160291766	160344150	2	neutral	AA	54.5683	somatic	0	0.022778841635054	0.0170698416940295
2	173643138	173738084	2	neutral	AA	62.5137	somatic	0	0.793634937243942	0.970354298162699
2	179546160	179559256	1	loss	A	-1	germline	1	0.000539262430130207	0.000681064852402047
2	183510974	183550262	2	neutral	AA	54.5704	somatic	0	0.633568390379239	0.87686420630848
2	189616984	189630080	2	neutral	AA	54.6459	somatic	0	0.630196015528193	0.803540154089349
2	192200170	192419528	2	neutral	AA	100	somatic	0	0.108928251930953	0.0673691539270989
2	195192606	195199154	2	neutral	AA	100	somatic	0	0.13232771423998	0.190509958762443
2	195474170	195510184	2	neutral	AA	100	germline	1	0.871071532080675	0.954857533132329
2	199648520	199786028	2	neutral	AA	54.845	somatic	0	0.451240867760892	0.81769418148007
2	203636252	203646074	2	neutral	AA	100	somatic	0	0.123170046608016	0.371947097496869
2	219184478	219187752	2	neutral	AA	100	somatic	0	0.169041491978329	0.396873233366973
2	219187752	219191026	0	loss	-	-1	germline	1	0.0832653219860785	0.270038127292233
2	219358000	219423480	2	neutral	AA	54.5678	somatic	0	0.888162077306959	0.927452452732286
2	219770524	219822908	2	neutral	AA	54.5678	somatic	0	0.848269997045268	0.878862761419437
2	223146018	223162388	2	neutral	AA	100	somatic	0	0.650735418709233	0.49609029399425
2	225175898	225192268	2	neutral	AA	54.5679	somatic	0	0.467298560115166	0.496090293994251
2	238419228	238442146	2	neutral	AA	100	germline	1	0.000420369232476836	0.00152076316552374
2	241686680	241709598	2	neutral	AA	25.5142	somatic	0	0.0109574781834023	0.0273107833537722
3	186618	193166	1	loss	A	-1	germline	1	0.014380280239836	0.0367633285893355
3	8289768	8319234	2	neutral	AA	36.3786	somatic	0	0.891795221490092	0.867078078825743
3	21123848	21231890	2	neutral	AA	100	somatic	0	0.0355212586815908	0.0599677938117666
3	25897340	25913710	2	neutral	AA	54.5678	somatic	0	0.444037071991145	0.176710068786891
3	48785874	48870998	2	neutral	AA	22.1165	somatic	0	0.00788655532286124	0.00301910127742133
3	51100592	51231552	2	neutral	AA	45.1383	somatic	0	0.175318287520104	0.381067588267142
3	68587026	68593574	1	loss	A	-1	somatic	0	0.0153918953000844	0.0399078806805786
3	75554098	75557372	1	loss	A	-1	germline	1	0.083270155900831	0.270046522894907
3	75724346	75753812	3	gain	AAB	0.587267	germline	1	3.39629383776408e-05	2.50509482856431e-05
3	90267454	90509730	2	neutral	AA	1.47646	somatic	0	5.4451661342511e-10	4.43515202674938e-07
3	93777182	93787004	3	gain	-	-1	somatic	0	0.00273542831180997	0.00505310899666267
3	93793552	93983444	2	neutral	AA	100	germline	1	0.0407530639376572	0.127506602801949
3	95653184	95689198	2	neutral	AA	55.6516	somatic	0	0.135800310836313	0.33493859942053
3	96046064	96068982	2	neutral	AA	100	somatic	0	0.894312886704571	0.986085083950652
3	98688182	98698004	1	loss	A	-1	germline	1	0.00271606238788365	0.00498793617487925
3	129372110	129417946	2	neutral	AA	25.9733	somatic	0	0.0126869892868251	0.0551909223732909
3	142248752	142268396	2	neutral	AA	55.0709	somatic	0	0.287081878232907	0.491898185087079
3	149965570	149978666	2	neutral	AA	100	somatic	0	0.475941329567787	0.6849770168191
3	163045200	163051748	1	loss	A	-1	germline	1	0.0143179582123672	0.0366670517561984
3	168699398	168800892	2	neutral	AA	100	somatic	0	0.385652547270135	0.348252743411016
3	175447112	175519140	2	neutral	AA	100	germline	1	0.706632143001581	0.854801613717259
3	176347462	176439134	2	neutral	AA	54.5686	somatic	0	0.0429414417573593	0.148172514137649
3	188657702	188667524	2	neutral	AA	54.5678	somatic	0	0.625813369073886	0.896193603358078
3	189646450	189652998	1	loss	A	-1	germline	1	0.0143277558693578	0.0366724159641585
3	190019686	190022960	0	loss	-	-1	germline	1	0.0832653219860785	0.270038127292233
3	191345656	191355478	1	loss	A	-1	germline	1	0.0027384531440792	0.00505121129094854
3	193156178	193169274	1	loss	A	-1	germline	1	0.0143241924009506	0.0366754815341043
4	124412	134234	1	loss	A	-1	germline	1	0.00919230966666441	0.0415881740521306
4	553306	556580	5	gain	AAABB	6.46615	germline	1	0.083270155900831	0.270046522894905
4	2396568	2403116	2	neutral	AA	53.2201	somatic	0	0.774372251925717	0.957936425024705
4	7163512	7183156	2	neutral	AA	14.1586	somatic	0	0.348255973031258	0.600736949841638
4	13642758	13659128	2	neutral	AA	100	somatic	0	0.752930252690994	0.970081833105405
4	22050390	22145336	2	neutral	AA	22.1049	somatic	0	0.583343562917909	0.835170311127457
4	30634818	30641366	2	neutral	AA	100	somatic	0	0.579281610420397	0.82868686047427
4	35143116	35152938	1	loss	A	100	somatic	0	0.00280942546177294	0.00522880520393088
4	37798330	37804878	2	neutral	AA	100	somatic	0	0.362707436909353	0.347286775543899
4	38161744	38197758	2	neutral	AA	54.5678	somatic	0	0.456377284144799	0.67403026153551
4	40293118	40296392	4	gain	AABB	34.62	germline	1	0.0832725729434541	0.270050720767694
4	43531104	43540926	2	neutral	AA	54.4538	somatic	0	0.938276341042542	0.443394143947667
4	45024048	45027322	0	loss	-	-1	germline	1	0.083266127622751	0.270039526546114
4	46199414	46205962	1	loss	A	-1	somatic	0	0.0151048278478758	0.0390419851976556
4	49146014	49155836	59	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBBBBBB	100	germline	1	0.014306132558658	0.0366314355126842
4	49653484	49656758	14	gain	AAAAAAAAABBBBB	38.9259	germline	1	0.083266933265738	0.270040925805286
4	59164454	59190646	2	neutral	AA	100	somatic	0	0.537011738588381	0.734454799801343
4	61263088	61269636	2	neutral	AA	100	somatic	0	0.473182027823106	0.727359218623392
4	63829904	63843000	1	loss	A	-1	germline	1	0.000533428031037819	0.000672581875627909
4	68518272	68623040	1	loss	A	-1	germline	1	4.55971342632226e-16	0
4	69264744	69366238	1	loss	A	-1	germline	1	1.43912809983178e-05	6.84783190966209e-05
4	70836264	70855908	2	neutral	AA	27.4477	somatic	0	0.133078098023106	0.276254209349229
4	73298312	73334326	2	neutral	AA	100	somatic	0	0.403761556615452	0.666852539795009
4	75321644	75531180	2	neutral	AA	48.2183	somatic	0	0.493665349797884	0.603756127408136
4	83175970	83218532	2	neutral	AA	54.568	somatic	0	0.00425945060696182	0.0411633072549324
4	83464082	83483726	2	neutral	AA	100	somatic	0	0.688636963152526	0.916346181153945
4	99064692	99149816	2	neutral	AA	26.3303	somatic	0	0.0339060788708796	0.144069963533174
4	101831222	101903250	2	neutral	AA	27.284	somatic	0	0.0808848870294146	0.0467939355260623
4	108012534	108019082	2	neutral	AA	100	somatic	0	0.636163031408643	0.702711390171852
4	120584694	120597790	2	neutral	AA	48.2073	somatic	0	0.827228965391763	0.950454105584493
4	134512290	134515564	1	loss	A	-1	germline	1	0.083266933265738	0.270040925805287
4	137170778	137180600	1	loss	A	-1	germline	1	0.00271520097375239	0.0049947394175579
4	138018744	138025292	2	neutral	AA	100	somatic	0	0.926138633457037	0.685623599866684
4	142042490	142091600	2	neutral	AA	54.5686	somatic	0	0.882439515683598	0.907774899011532
4	146004030	146007304	1	loss	A	-1	germline	1	0.083266127622751	0.270039526546114
4	146285594	146288868	4	gain	AAAA	10.8868	germline	1	0.0832790186682985	0.270061915328006
4	148446434	148603586	2	neutral	AA	6.69742	somatic	0	0.847242754089291	0.450573973461844
4	151036168	151160580	2	neutral	AA	32.3708	somatic	0	0.159249307673741	0.452508048387513
4	158507436	158536902	2	neutral	AA	54.6578	somatic	0	0.0870868608078201	0.193616236969311
4	159745008	159803940	2	neutral	AA	35.1561	somatic	0	0.345771318878645	0.384830256439499
4	163277654	163287476	2	neutral	AA	100	somatic	0	0.0511467145855083	0.0885480340023763
4	165081628	165084902	1	loss	A	-1	somatic	0	0.083266933265738	0.270040925805287
4	172503786	172513608	0	loss	-	-1	germline	1	0.0143072766000836	0.0366348809225364
4	175820348	175830170	2	neutral	AA	100	somatic	0	0.384544355712638	0.896978653216089
4	189269940	189279762	1	loss	A	-1	germline	1	0.00271415364433604	0.00498387392543453
5	13096	16370	4	gain	-	-1	somatic	0	0.0832790186682985	0.270061915328006
5	3323110	3326384	4	gain	-	-1	germline	1	0.0832757957553576	0.270056318005508
5	12608174	12663832	1	loss	A	-1	germline	1	9.34423683388618e-13	3.44169137633799e-15
5	45371092	45377640	1	loss	A	-1	germline	1	0.0143741521678566	0.0368332771296056
5	58028376	58038198	1	loss	A	-1	germline	1	0.0027091780608552	0.00497716224401668
5	86918152	86921426	0	loss	-	-1	germline	1	0.0832653219860785	0.270038127292233
5	91203818	91207092	1	loss	A	-1	germline	1	0.083266933265738	0.270040925805287
5	118538444	118544992	1	loss	A	-1	germline	1	0.0143280104327352	0.0366969468021227
5	144386674	144396496	2	neutral	AA	54.5678	somatic	0	0.363127351218531	0.71549547938124
5	150656384	150662932	2	neutral	AA	54.5678	somatic	0	0.96623313764844	0.984660384727735
5	155027174	155040270	2	neutral	AA	100	somatic	0	0.953382586199549	0.964294233054299
5	156153430	156179622	2	neutral	AA	100	somatic	0	0.446693520507199	0.8259238000434
5	157453208	157456482	2	neutral	AA	100	somatic	0	0.937217529461432	0.947545653674876
5	157463030	157502318	2	neutral	AA	54.5719	somatic	0	0.659149563032899	0.812418483557842
5	159014906	159122948	2	neutral	AA	45.1895	somatic	0	0.759010249124915	0.390029790225122
5	160818880	160904004	2	neutral	AA	100	somatic	0	0.0558809217142507	0.0740699123531526
5	160904004	161143006	2	neutral	AA	55.1443	somatic	0	0.0194207503597262	0.0383596170272565
5	162753814	162763636	2	neutral	AA	54.5679	somatic	0	0.255909248022864	0.679085099185406
5	174893806	174897080	2	neutral	AA	100	somatic	0	0.0907904505482894	0.282872260079339
5	176956426	176966248	2	neutral	AA	54.5678	somatic	0	0.2574965855797	0.708907657168213
5	178292218	178505028	2	neutral	AA	18.4782	somatic	0	3.77577410742837e-11	1.7481013192544e-08
5	180063452	180119110	2	neutral	AA	23.1174	somatic	0	1.03917901864364e-06	1.33639220940562e-05
5	181045652	181048926	5	gain	AAAAB	50.2658	germline	1	0.083270155900831	0.270046522894905
6	166974	170248	3	gain	-	-1	somatic	0	0.0837101855035742	0.270809918263828
6	294660	383058	4	gain	AABB	5.64527	germline	1	4.72196281106463e-18	0
6	1895646	1934934	2	neutral	AA	19.6673	somatic	0	5.89597016490335e-07	2.99655196434045e-06
6	4252926	4279118	2	neutral	AA	41.0209	somatic	0	0.979955581406102	0.902549177136905
6	8420728	8453468	2	neutral	AA	21.9946	somatic	0	0.114339461072777	0.202952280254187
6	9304708	9321078	2	neutral	AA	100	somatic	0	0.455686645389918	0.832364783371878
6	19041584	19048132	1	loss	A	-1	germline	1	0.0143226654395407	0.0366678180295887
6	24486246	24525534	2	neutral	AA	55.1617	germline	1	0.347585309979441	0.441871694655303
6	27413202	27468860	2	neutral	AA	54.6773	somatic	0	0.800421062304654	0.993690505768326
6	32487902	32559930	0	loss	-	-1	germline	1	9.6351778345202e-07	2.25117395613594e-07
6	32559930	32576300	1	loss	A	-1	germline	1	0.0143070223616815	0.0366341152514007
6	32579574	32667972	1	loss	A	-1	somatic	0	4.36310139236463e-08	4.32203051126123e-09
6	33479924	33496294	2	neutral	AA	33.2769	germline	1	0.071366036571617	0.310396080887877
6	35788094	35797916	3	gain	AAB	2.80902	germline	1	0.00270293552879156	0.00496158570744776
6	42742070	42755166	2	neutral	AA	36.3786	somatic	0	0.273575303722051	0.464653888548622
6	51801228	51824146	2	neutral	AA	54.5679	somatic	0	0.0849202279397701	0.0910843032228255
6	53251610	53408762	2	neutral	AA	54.5681	somatic	0	0.0959061714857698	0.26419217975098
6	54063562	54070110	1	loss	A	-1	germline	1	0.0143278831505478	0.0366758647461115
6	54760924	54832952	2	neutral	AA	22.3443	somatic	0	0.170560997238827	0.211652045850472
6	55189818	55553232	2	neutral	AA	100	somatic	0	0.46563721144868	0.351135530844104
6	60231778	60241600	4	gain	-	-1	germline	1	0.0027007456419176	0.00495894214451098
6	73108420	73131338	2	neutral	AA	56.3591	somatic	0	0.596961919249216	0.38937912010895
6	74719228	74735598	2	neutral	AA	100	somatic	0	0.52628835451166	0.877888238931457
6	75252890	75982992	2	neutral	AA	35.8061	somatic	0	0.00167949686013146	0.00165481865116979
6	76729464	76742560	1	loss	A	-1	germline	1	0.0143208841660375	0.0366555593364644
6	87631884	87756296	2	neutral	AA	66.9862	somatic	0	0.579657421423892	0.610189368772719
6	97568474	97584844	2	neutral	AA	100	somatic	0	0.440942962008135	0.383896196158669
6	105147784	105170702	2	neutral	AA	100	somatic	0	0.178953336264089	0.411038730869451
6	109623342	109659356	2	neutral	AA	100	somatic	0	0.409703100548861	0.797635122474066
6	112700902	112808944	2	neutral	AA	36.3787	somatic	0	0.486666907282939	0.618658990190279
6	118708692	118783994	2	neutral	AA	36.7312	somatic	0	0.894558138127679	0.89016350793809
6	134289658	134296206	2	neutral	AA	54.5678	somatic	0	0.132734597036875	0.304194963182525
6	137553836	137616042	2	neutral	AA	54.5679	somatic	0	0.0177728498535471	0.0219885284202697
6	157312426	157315700	6	gain	AAAABB	7.16755	germline	1	0.083270155900831	0.270046522894905
6	165310808	165320630	1	loss	A	-1	germline	1	0.00274542891274018	0.00509757469495831
6	167235920	167445456	2	neutral	AA	10.9372	somatic	0	1.49155499667869e-07	9.74433920220008e-08
6	170143232	170146506	4	gain	AAAB	11.0954	germline	1	0.0832725729434541	0.270050720767694
7	903624	906898	4	gain	-	-1	germline	1	0.0832725729434541	0.270050720767694
7	9494600	9507696	1	loss	A	-1	germline	1	0.000540192173448657	0.000690051057057772
7	9763068	9766342	1	loss	A	-1	germline	1	0.083266933265738	0.270040925805287
7	57484892	57497988	3	gain	-	-1	germline	1	0.000616461251509432	0.000963359050344059
7	58061116	58067664	3	gain	-	-1	germline	1	0.0143118535728629	0.0366421554966812
7	61047004	61053552	4	gain	-	-1	germline	1	0.0143104549163886	0.0366379437470963
7	61096114	61109210	2	neutral	AA	1.67023	germline	1	0.00751342854640138	0.014523121921862
7	62294398	62297672	2	neutral	AA	100	germline	1	0.0941360244253008	0.288442122217636
7	62297672	62356604	3	gain	AAB	0.452492	germline	1	9.80895670128258e-09	6.62451316024715e-10
7	62402440	62405714	5	gain	-	-1	germline	1	0.083270155900831	0.270046522894905
7	62438454	62454824	3	gain	AAB	2.3191	germline	1	0.000109372614358297	9.47594241945682e-05
7	62517030	62572688	2	neutral	AA	13.5655	somatic	0	0.0140975710924437	0.0178837044214987
7	66016936	66187184	2	neutral	AA	25.6273	somatic	0	0.477564823316749	0.372094750819974
7	67018780	67022054	4	gain	AABB	12.8403	somatic	0	0.0832790186682985	0.270061915328006
7	67653936	67680128	2	neutral	AA	100	somatic	0	0.208045930053592	0.722056364027933
7	67722690	67771800	2	neutral	AA	11.6713	somatic	0	0.110016898006321	0.0997667296428091
7	74185566	74195388	2	neutral	AA	100	germline	1	0.735944148895965	0.972937166478751
7	81971138	82062810	2	neutral	AA	54.5874	somatic	0	0.60794573722168	0.66700781281398
7	95741582	95767774	2	neutral	AA	100	somatic	0	0.457065608556883	0.709764862125296
7	99215296	99228392	2	neutral	AA	21.8357	somatic	0	0.692640123546606	0.791261463058691
7	100731158	100737706	1	loss	A	-1	germline	1	0.0143199936025687	0.0366544102678413
7	100950516	100957064	4	gain	AAAA	3.22183	germline	1	0.0143086749825342	0.0366356466076733
7	100957064	100960338	13	gain	AAAAAAAABBBBB	7.12156	germline	1	0.083266933265738	0.270040925805286
7	100960338	100973434	4	gain	AABB	0.376959	germline	1	0.000532639040230035	0.000672216528641245
7	102914916	102950930	2	neutral	AA	54.5678	somatic	0	0.085697822710839	0.148072412597555
7	106100518	106103792	4	gain	AABB	20.8569	germline	1	0.0832790186682985	0.270061915328006
7	109803412	109813234	1	loss	A	-1	germline	1	0.00270302825819831	0.00496135239994244
7	109888536	109918002	2	neutral	AA	100	somatic	0	0.115635956833356	0.165509352610831
7	110540062	110549884	1	loss	A	-1	germline	1	0.0143226654395407	0.0366609220734299
7	121809170	121845184	2	neutral	AA	21.9271	somatic	0	0.375933989888295	0.842622326221346
7	132593726	132610096	2	neutral	AA	13.1553	somatic	0	0.790878047665858	0.855571179928682
7	134099766	134112862	1	loss	A	-1	germline	1	0.000532961677671672	0.000672202480550332
7	140559368	140615026	2	neutral	AA	42.4219	somatic	0	0.874700948523553	0.516530588601596
7	143846464	143849738	5	gain	-	-1	germline	1	0.083270155900831	0.270046522894905
7	149042302	149664362	2	neutral	AA	8.59441	somatic	0	0.589293516259328	0.770468747956671
7	150908482	150911756	3	gain	AAB	32.9362	somatic	0	0.0832870763927034	0.270075909004741
7	152401426	152407974	12	gain	AAAAAAAAAABB	2.33895	germline	1	0.0143066410115508	0.0366322011348161
7	154601554	154608102	1	loss	A	-1	germline	1	0.0143133795174524	0.0366471335650584
7	156343322	156353144	2	neutral	AA	100	somatic	0	0.149660513469878	0.501542322662034
7	157492496	157495770	3	gain	-	-1	somatic	0	0.0836988584754576	0.270790288429174
7	157495770	157518688	2	neutral	AA	100	germline	1	0.00233353624403858	0.00519220109330742
7	158013062	158029432	2	neutral	AA	62.2381	somatic	0	0.00840134236589094	0.0887940327620359
7	158592560	158595834	6	gain	AAAABB	20.4501	germline	1	0.083270155900831	0.270046522894905
7	159237538	159296470	3	gain	AAB	93.1103	somatic	0	2.68870363733919e-12	1.2729817200352e-12
7	159296470	159329210	3	gain	-	-1	somatic	0	0.000120401597733993	0.00011008758060238
7	159329210	159345973	3	gain	AAB	-1	somatic	0	NA	NA
8	219358	252098	2	neutral	AA	18.1893	somatic	0	6.57799293998642e-05	0.000193561697453437
8	5971776	6014338	2	neutral	AA	100	somatic	0	0.591748604470342	0.917364203524315
8	13292440	13312084	2	neutral	AA	100	somatic	0	0.179337371795213	0.531599188486711
8	14457984	14503820	2	neutral	AA	9.35976	somatic	0	0.0118341492624004	0.0669258856541002
8	28840666	28847214	2	neutral	AA	100	somatic	0	0.514081953396492	0.403229196637753
8	30137170	30156814	2	neutral	AA	54.571	somatic	0	0.961065633062082	0.829614016749886
8	32821850	32834946	1	loss	A	-1	germline	1	0.014307530842471	0.0366356466076737
8	39376398	39527002	1	loss	A	-1	germline	1	3.16778810973064e-29	0
8	40008280	40070486	2	neutral	AA	35.8709	somatic	0	0.306518889682475	0.262645673189016
8	43236444	43242992	5	gain	AAABB	0.835826	germline	1	0.0143076579651592	0.0366337324210828
8	47797126	47803674	2	neutral	AA	36.3786	somatic	0	0.550257805798291	0.925903712944342
8	65126408	65139504	2	neutral	AA	41.2105	somatic	0	0.131689358942542	0.0559912005812104
8	75806196	76166336	2	neutral	AA	100	somatic	0	0.00273789203084357	0.00139231138023688
8	77485758	77521772	2	neutral	AA	54.8498	somatic	0	0.024456776444621	0.0395566874947491
8	88361986	88391452	2	neutral	AA	78.4584	somatic	0	0.103973077927658	0.167691208842484
8	90012082	90162686	2	neutral	AA	21.9184	somatic	0	0.805630070822124	0.46457574669089
8	92192566	92205662	2	neutral	AA	54.5678	somatic	0	0.394568835531253	0.275645546743286
8	94749560	95116248	2	neutral	AA	75.5079	somatic	0	0.0282909551878564	0.0598513994677401
8	101480904	101510370	2	neutral	AA	55.5998	germline	1	0.307051385721643	0.262124700750667
8	109354874	109430176	2	neutral	AA	36.3915	somatic	0	0.086554996439328	0.165322720963069
8	110562980	110592446	2	neutral	AA	100	germline	1	0.67624923449042	0.930334187961781
8	111279986	111286534	1	loss	A	-1	germline	1	0.0143165590296419	0.0366540272519705
8	111643400	111649948	2	neutral	AA	100	somatic	0	0.389598119586102	0.855080260889462
8	118037522	118044070	2	neutral	AA	36.3788	germline	1	0.13427403194498	0.17047194897431
8	120843340	120849888	2	neutral	AA	100	somatic	0	0.428199864149892	0.490652622987042
8	125561174	125567722	2	neutral	AA	100	germline	1	0.126910576729397	0.153723853318276
8	130622778	130901068	2	neutral	AA	42.0851	somatic	0	0.0112503923511394	0.0266044911609017
8	131208824	131320140	2	neutral	AA	100	somatic	0	0.139019170911421	0.0724981127786919
8	136146016	136152564	1	loss	A	-1	germline	1	0.0143713442380531	0.0368271231432162
8	139672114	139750690	2	neutral	AA	21.5652	somatic	0	0.0430479030220883	0.250140115005263
8	141865694	141885338	2	neutral	AA	46.3013	somatic	0	0.50108568091399	0.450534840322269
8	143172020	143194938	2	neutral	AA	32.0115	somatic	0	0.0407627133688161	0.142063398033336
8	144124754	144128028	5	gain	AAAAB	100	germline	1	0.083270155900831	0.270046522894905
8	145067666	145070940	3	gain	-	-1	somatic	0	0.0834233474836835	0.270312482200389
9	4374064	4377338	2	neutral	AA	100	somatic	0	0.110532459283091	0.314582792087303
9	4848794	4852068	2	neutral	AA	100	somatic	0	0.704627677315322	0.851621300040368
9	6584014	6587288	2	neutral	AA	54.5678	somatic	0	0.625391294143798	0.805966900667908
9	8735032	8777594	2	neutral	AA	100	somatic	0	0.535581815524411	0.638933915475737
9	11102134	11108682	2	neutral	AA	100	somatic	0	0.0811007954365577	0.152968620648339
9	11452452	11485192	2	neutral	AA	36.3786	somatic	0	0.384374246621243	0.209806004387594
9	11504836	12038498	2	neutral	AA	37.3096	somatic	0	0.000147575996781041	0.000916622638829634
9	19015392	19021940	2	neutral	AA	100	germline	1	0.94544926685997	0.924113759414597
9	21984910	21988184	2	neutral	AA	22.9153	somatic	0	0.180127485640775	0.411043505852383
9	22256652	22282844	2	neutral	AA	36.5483	somatic	0	0.633574497719486	0.853553826987828
9	22495654	22502202	1	loss	A	-1	germline	1	0.0143676436152397	0.0368098198784048
9	24502616	24518986	1	loss	A	-1	germline	1	0.000107730185140882	9.10766259411e-05
9	28883228	28886502	1	loss	A	-1	somatic	0	0.0835371792518438	0.270509975524643
9	31548264	31594100	2	neutral	AA	54.6174	somatic	0	0.0652338706574983	0.388467092147391
9	32307832	32353668	2	neutral	AA	100	somatic	0	0.336123850850784	0.430116008939508
9	33722200	33804050	2	neutral	AA	0.950275	somatic	0	0.114333368293373	0.285244150747837
9	33935010	34049600	2	neutral	AA	13.7475	somatic	0	0.048446599897974	0.0838512993292476
9	34884470	34917210	2	neutral	AA	89.3516	somatic	0	0.779093553782113	0.964964978876101
9	36361044	36632786	2	neutral	AA	100	somatic	0	0.408572887345254	0.541781440015062
9	36691718	36694992	2	neutral	AA	100	somatic	0	0.142767992785961	0.361695579760571
9	37310504	37317052	2	neutral	AA	65.3291	somatic	0	0.763674083765738	0.917883200759854
9	40869342	40872616	4	gain	AABB	38.4333	germline	1	0.083270155900831	0.270046522894905
9	40908630	40911904	5	gain	AAAAA	6.80261	germline	1	0.083270155900831	0.270046522894905
9	40911904	40915178	7	gain	-	-1	germline	1	0.083270155900831	0.270046522894905
9	40921726	40925000	5	gain	AAABB	1.82833	germline	1	0.083270155900831	0.270046522894905
9	40925000	40928274	6	gain	AAAABB	2.64549	germline	1	0.083270155900831	0.270046522894905
9	71802094	71864300	2	neutral	AA	100	somatic	0	0.588213365432713	0.743760105789065
9	74954956	75017162	2	neutral	AA	27.288	somatic	0	0.0486997531984226	0.12666085170512
9	76418434	76421708	2	neutral	AA	88.1925	somatic	0	0.324249535135305	0.569459100243701
9	80828512	80835060	2	neutral	AA	54.5679	somatic	0	0.548693326798638	0.432117945648132
9	81152638	81178830	2	neutral	AA	100	somatic	0	0.876577556817009	0.83613560486758
9	82449142	82514622	2	neutral	AA	100	somatic	0	0.610084521018932	0.180282173192256
9	85274604	85310618	2	neutral	AA	20.3121	somatic	0	0.603384453486824	0.553104201906099
9	96560082	96563356	2	neutral	AA	100	germline	1	0.214538525064702	0.452810170897034
9	97738722	97771462	2	neutral	AA	35.91	somatic	0	0.123753668057243	0.317078397823318
9	97814024	97859860	2	neutral	AA	22.3888	somatic	0	0.414839611650518	0.389580706303333
9	101952360	101962182	1	loss	A	-1	germline	1	0.00270363107020111	0.00496283018400145
9	110402554	110428746	2	neutral	AA	100	somatic	0	0.620840977869026	0.667000460739031
9	111816922	111820196	2	neutral	AA	100	somatic	0	0.217254139115549	0.456013254035003
9	118836378	119032818	2	neutral	AA	35.3842	somatic	0	0.0458615272150927	0.137592273796784
9	121894294	121949952	2	neutral	AA	17.9692	somatic	0	0.799046955877142	0.449083311773103
9	126798746	126811842	2	neutral	AA	54.5679	somatic	0	0.435586543131651	0.479380446130594
9	127407710	127424080	2	neutral	AA	36.5381	somatic	0	0.700001357103152	0.442181503405929
9	128046140	128121442	2	neutral	AA	40.684	somatic	0	0.0328788806123756	0.123789039425117
9	128281868	128291690	2	neutral	AA	54.5679	somatic	0	0.299727434679828	0.349550206415432
9	128553610	128563432	2	neutral	AA	36.4119	somatic	0	0.32374015775869	0.784926977443256
9	128717310	128720584	2	neutral	AA	36.3786	somatic	0	0.282332492845968	0.527392912983838
9	129120012	129123286	2	neutral	AA	100	somatic	0	0.938104817253234	0.947801111782638
9	129424494	129444138	3	gain	AAB	0.450799	germline	1	2.23300215520113e-05	1.24989434444611e-05
9	133873860	133886956	2	neutral	AA	54.5682	somatic	0	0.352619786094602	0.186301885168266
9	136555266	136601102	2	neutral	AA	5.62708	somatic	0	0.121008270964229	0.119109494112789
9	136682952	136699322	2	neutral	AA	36.3791	somatic	0	0.167506116257669	0.136704859312407
9	136800816	136827008	2	neutral	AA	49.2303	somatic	0	0.260217344418996	0.535049203717884
9	137714262	137717536	4	gain	AAAB	42.9398	germline	1	0.0832725729434541	0.270050720767694
10	4665450	4668724	1	loss	A	-1	germline	1	0.083270155900831	0.270046522894907
10	5847364	5850638	0	loss	-	-1	germline	1	0.0832653219860785	0.270038127292233
10	13983254	13993076	1	loss	A	-1	germline	1	0.00270492985175696	0.00496640964807527
10	38485870	38492418	4	gain	-	-1	germline	1	0.0143113449565572	0.0366406239023671
10	38492418	38525158	3	gain	-	-1	germline	1	4.59389047974337e-08	5.23232357441117e-09
10	38525158	38528432	11	gain	-	-1	germline	1	0.083266933265738	0.270040925805286
10	38574268	38577542	3	gain	-	-1	germline	1	0.0835767672502023	0.270578632599658
10	38577542	38580816	5	gain	-	-1	germline	1	0.083270155900831	0.270046522894905
10	38580816	38836188	3	gain	-	-1	germline	1	1.54942116583441e-13	7.43849426498855e-15
10	39556468	39563016	1	loss	A	-1	germline	1	0.0149118375297068	0.0384278120559819
10	41828624	41841720	2	neutral	AA	7.73915	germline	1	0.00117053373023048	0.00206668253449105
10	41858090	41864638	27	gain	AAAAAAAAAAAAAAAAAABBBBBBBBB	4.4625	germline	1	0.0143065138968332	0.0366322011348161
10	41881008	41884282	77	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	11.9451	germline	1	0.0832653219860785	0.270038127292232
10	42300080	42322998	3	gain	AAB	1.0416	germline	1	4.67652763042167e-06	1.71106851898362e-06
10	45155008	45161556	2	neutral	AA	15.4043	somatic	0	0.965767627780437	0.94300082099873
10	46513718	46559554	4	gain	AABB	0.520266	germline	1	4.24476428268204e-10	1.02359232201366e-11
10	49794266	49804088	1	loss	A	-1	germline	1	0.0027131066840512	0.0049810633755234
10	50232982	50239530	2	neutral	AA	100	germline	1	0.353533203078996	0.788089702822733
10	52659016	52668838	2	neutral	AA	100	germline	1	0.9927541648545	0.999426495277421
10	54921350	54924624	1	loss	A	-1	somatic	0	0.0832741843367763	0.270053519376017
10	57124752	57183684	2	neutral	AA	1.71524	germline	1	0.27391256714071	0.615340196103193
10	58280474	58345954	2	neutral	AA	29.8824	somatic	0	0.592873620364014	0.727240203441873
10	60159750	60199038	2	neutral	AA	100	somatic	0	0.542800424339787	0.528198962115833
10	62932828	62945924	2	neutral	AA	100	germline	1	0.116522810327675	0.216660803193565
10	65548754	65555302	1	loss	A	-1	germline	1	0.0143177038065364	0.0366536442396013
10	67722690	67729238	1	loss	A	-1	germline	1	0.0146982262556243	0.0378110731694203
10	69582322	69588870	2	neutral	AA	100	somatic	0	0.166378399042805	0.20136858961957
10	70531782	70535056	2	neutral	AA	100	somatic	0	0.125764518345561	0.337460555037324
10	74457308	74460582	2	neutral	AA	100	somatic	0	0.607222446061725	0.794522656983539
10	75586838	75619578	2	neutral	AA	47.7887	somatic	0	0.490240445019447	0.7560750101732
10	82089002	82118468	2	neutral	AA	100	somatic	0	0.187414094025565	0.531862728457451
10	82501526	82527718	2	neutral	AA	100	somatic	0	0.592875569912608	0.309195024747644
10	83457534	83464082	2	neutral	AA	36.4863	germline	1	0.507893383763153	0.778004138436496
10	85235316	85254960	2	neutral	AA	54.5678	somatic	0	0.351541213897848	0.43023284909072
10	89995712	89998986	1	loss	A	-1	germline	1	0.0832846590090727	0.270071710846148
10	95263578	95286496	2	neutral	AA	54.5721	germline	1	0.84725015831138	0.965032327086282
10	98691456	98720922	2	neutral	AA	100	somatic	0	0.939634732820274	0.957820571904201
10	99428106	99431380	2	neutral	AA	100	somatic	0	0.329195812551408	0.574237615119583
10	106270766	106274040	1	loss	A	-1	germline	1	0.0832677389150395	0.270042325069754
10	106274040	106329698	2	neutral	AA	100	somatic	0	0.269232862687284	0.255774522284108
10	110605542	110608816	2	neutral	AA	100	somatic	0	0.863846823929405	0.923328942271785
10	110870736	110939490	2	neutral	AA	54.5678	somatic	0	0.178056699229996	0.202239899257511
10	116983294	117058596	2	neutral	AA	69.8731	somatic	0	0.346267591611137	0.591689496223364
10	117467846	117471120	2	neutral	AA	54.5678	somatic	0	0.315452049510951	0.56085802864857
10	120466830	120470104	1	loss	A	-1	germline	1	0.083266933265738	0.270040925805287
10	122319914	122369024	2	neutral	AA	36.3802	somatic	0	0.821934660639358	0.599808669170168
10	122987810	123010728	2	neutral	AA	100	somatic	0	0.739224608052643	0.727235865438518
10	123253004	123256278	3	gain	AAB	9.75926	somatic	0	0.0832878821998775	0.270077308401524
10	126504086	126513908	2	neutral	AA	34.3166	somatic	0	0.113978417451306	0.229638511924259
10	127731836	127741658	2	neutral	AA	21.8278	germline	1	0.0841136210092331	0.323837572612619
10	127797316	127800590	3	gain	AAB	6.99999	somatic	0	0.0833007759735709	0.270099699469877
10	128461938	128465212	5	gain	AAABB	17.4554	germline	1	0.083270155900831	0.270046522894905
10	130072746	130102212	2	neutral	AA	65.0129	somatic	0	0.619963556429309	0.443677130236563
10	131621348	131627896	1	loss	A	-1	somatic	0	0.0165192219313727	0.043355404340821
10	132361272	132364546	5	gain	AAABB	12.9671	germline	1	0.083270155900831	0.270046522894905
10	132364546	132367820	3	gain	AAB	72.155	germline	1	0.0832838532271596	0.270070311470534
10	133009524	133012798	4	gain	AABB	100	somatic	0	0.0832774071991982	0.270059116656172
10	133111018	133114292	4	gain	AABB	17.1636	germline	1	0.0832774071991982	0.270059116656172
10	133562830	133611940	3	gain	AAB	11.8039	somatic	0	1.31058855196739e-06	7.70202251532126e-07
11	2046250	2065894	3	gain	AAB	5.26732	somatic	0	2.58152750012791e-05	1.89518217630358e-05
11	2308170	2350732	2	neutral	AA	27.3746	somatic	0	0.0581786250398804	0.134011466541951
11	4947014	4953562	1	loss	A	-1	germline	1	0.0143202480442891	0.0366582406191487
11	5352990	5366086	2	neutral	AA	100	somatic	0	0.0485084501607728	0.0816234793159181
11	5762240	5788432	1	loss	A	-1	germline	1	9.77714055607134e-07	2.35132554426976e-07
11	6011064	6158394	2	neutral	AA	100	somatic	0	0.583005420662002	0.859878030517119
11	9461860	9471682	2	neutral	AA	54.5678	somatic	0	0.268590227169987	0.239587585049902
11	18426072	18442442	2	neutral	AA	54.5679	somatic	0	0.906738055635864	0.878901261986083
11	18923720	18940090	3	gain	AAB	3.53956	germline	1	0.000107712290995713	9.09577440419973e-05
11	24672864	24695782	2	neutral	AA	100	somatic	0	0.05870143732052	0.0930582330969824
11	24908592	25075566	2	neutral	AA	37.7683	somatic	0	0.000159057155800988	0.0012108305427061
11	28984722	28987996	1	loss	A	-1	germline	1	0.083266127622751	0.270039526546114
11	31371468	31378016	1	loss	A	-1	somatic	0	0.0161335674175633	0.042132203294775
11	32363490	32370038	1	loss	A	-1	somatic	0	0.0150450599104027	0.0388517615178732
11	36308660	36311934	3	gain	AAB	25.7405	germline	1	0.0833064175079808	0.270109495988352
11	36884884	36940542	2	neutral	AA	38.7816	somatic	0	0.924429752440381	0.980058929821962
11	38944230	39058820	2	neutral	AA	43.6812	somatic	0	0.0448913221551912	0.025612087434252
11	47034284	47044106	1	loss	A	-1	germline	1	0.0144511753526842	0.0369604038640821
11	47178340	47201258	2	neutral	AA	36.3786	somatic	0	0.0534311474247355	0.0354511923157904
11	48124526	48160540	2	neutral	AA	100	somatic	0	0.557661939396559	0.634746043822178
11	48710572	48717120	1	loss	A	-1	germline	1	0.0159778081912397	0.0416279375803627
11	48792422	48943026	2	neutral	AA	0.76365	germline	1	0.000103460202729582	0.00126421305707136
11	49136192	49139466	2	neutral	AA	100	germline	1	0.340069623125286	0.584636961761695
11	50684794	54754376	2	neutral	AA	1.07001	somatic	0	1.68839563891465e-07	5.55384988676355e-06
11	55599068	55684192	1	loss	A	-1	germline	1	7.43536532027546e-18	0
11	57579838	58080760	2	neutral	AA	24.7728	somatic	0	0.844126870946397	0.541163949930697
11	66291952	66393446	2	neutral	AA	27.3695	somatic	0	0.0006143876105745	0.00699067551876109
11	67536072	67588456	2	neutral	AA	45.1289	somatic	0	0.0896397366653262	0.186916717807658
11	70885374	70931210	2	neutral	AA	37.0384	somatic	0	0.809939196398857	0.845394468479673
11	71527078	71536900	2	neutral	AA	18.1893	somatic	0	0.619335938001542	0.721477803703939
11	79008168	79076922	2	neutral	AA	100	somatic	0	0.63135102908489	0.813772196550544
11	80651716	80723744	2	neutral	AA	22.2258	somatic	0	0.18442290071965	0.128609195393183
11	89229596	89236144	1	loss	A	-1	germline	1	0.0143160502658283	0.0366586236735399
11	90715992	90722540	2	neutral	AA	100	somatic	0	0.144855911841812	0.22617845249387
11	92559254	92582172	2	neutral	AA	100	somatic	0	0.716443832038139	0.80548015319628
11	104394764	104401312	1	loss	A	-1	germline	1	0.0146217273234169	0.0375736201403998
11	107852108	107858656	2	neutral	AA	36.3803	somatic	0	0.41454462228338	0.351765664352668
11	118302716	118328908	2	neutral	AA	100	somatic	0	0.440619782604087	0.680917822908689
11	123996202	124084600	2	neutral	AA	64.9601	somatic	0	0.553324023890313	0.800337115482183
11	125204308	125217404	1	loss	A	-1	germline	1	0.000547004013494102	0.000707325705990081
11	131264482	131267756	1	loss	A	-1	germline	1	0.0833273744883393	0.270145885327622
11	132125544	132164832	2	neutral	AA	83.2257	somatic	0	0.042582668241049	0.11938062124154
11	134980472	135075418	3	gain	AAB	1.13747	somatic	0	1.98610073876715e-18	0
11	135075418	135086622	3	gain	AAB	-1	somatic	0	NA	NA
12	2255786	2259060	6	gain	-	-1	germline	1	0.083270155900831	0.270046522894905
12	11383698	11390246	1	loss	A	-1	germline	1	0.014328774146805	0.0366839130075358
12	18095398	18098672	1	loss	A	-1	germline	1	0.083266933265738	0.270040925805287
12	37614986	37624808	1	loss	A	-1	germline	1	0.00275436601756662	0.00512626867513466
12	37827796	37834344	5	gain	AAABB	11.0899	germline	1	0.0143076579651592	0.0366337324210828
12	39710346	39716894	1	loss	A	-1	germline	1	0.0148290449265365	0.0382076248521027
12	45508600	45511874	0	loss	-	-1	germline	1	0.0832653219860785	0.270038127292233
12	59540964	59554060	1	loss	A	-1	germline	1	0.000533670326000238	0.000672820856988943
12	68092652	68112296	2	neutral	AA	100	somatic	0	0.383743369463892	0.24304596556431
12	70476124	70485946	2	neutral	AA	70.8008	somatic	0	0.00338578518319736	0.0067433511904369
12	86030898	86040720	1	loss	A	-1	somatic	0	0.0027696758125401	0.0051288335255989
12	90090658	90097206	1	loss	A	-1	germline	1	0.0143192303013351	0.0366586236735399
12	110821626	111021340	2	neutral	AA	9.1111	somatic	0	0.939725427392718	0.904899252723134
12	116413618	116423440	3	gain	AAB	76.2262	germline	1	0.00270439635464361	0.0049646196203309
12	117458024	117615176	2	neutral	AA	36.3786	somatic	0	0.048766597335872	0.100151850182759
12	127122872	127126146	1	loss	A	-1	germline	1	0.083269350232586	0.270045123614563
12	127486286	127496108	2	neutral	AA	100	germline	1	0.00433217711448321	0.0107730143857628
13	20531254	20537802	2	neutral	AA	6.06309	somatic	0	0.788771200728828	0.990339476705146
13	21048546	21104204	2	neutral	AA	85.2122	somatic	0	0.109240824302089	0.230357483207229
13	22020924	22024198	0	loss	-	-1	germline	1	0.083266127622751	0.270039526546114
13	22502202	22508750	2	neutral	AA	100	somatic	0	0.550363535282877	0.793523394863757
13	23058782	23062056	1	loss	A	-1	germline	1	0.083269350232586	0.270045123614563
13	29027284	29099312	2	neutral	AA	90.2329	somatic	0	0.019734820038483	0.0236062119735889
13	29538028	29544576	2	neutral	AA	54.5678	somatic	0	0.569167384920723	0.554073921096156
13	35955068	35958342	3	gain	AAB	12.8596	germline	1	0.083285464797301	0.270073110227051
13	37497122	37510218	1	loss	A	-1	germline	1	0.000533454947637529	0.000672427283036736
13	42192038	42231326	2	neutral	AA	54.5785	somatic	0	0.626939783495332	0.292223568148469
13	44372522	44401988	2	neutral	AA	47.0817	somatic	0	0.588150714657754	0.400072931983747
13	48311144	48320966	2	neutral	AA	100	somatic	0	0.623511762696759	0.564502404075018
13	48959396	48962670	1	loss	A	-1	germline	1	0.0832919113304786	0.270084305464835
13	49827006	49853198	2	neutral	AA	36.3786	somatic	0	0.979224372701583	0.857366812488329
13	50494902	50501450	1	loss	A	-1	germline	1	0.0143337391635693	0.0366750983256003
13	52010764	52023860	2	neutral	AA	100	somatic	0	0.0408354280526243	0.0430480807420708
13	53660860	53667408	1	loss	A	-1	germline	1	0.0143715994844056	0.036810204318121
13	54368044	54384414	2	neutral	AA	24.1532	somatic	0	0.260365653791618	0.439763509584689
13	54548114	54561210	2	neutral	AA	100	somatic	0	0.635502933586835	0.859351556183294
13	55635082	55746398	2	neutral	AA	59.9886	somatic	0	0.221421592083248	0.129005362587137
13	60261244	60271066	2	neutral	AA	100	somatic	0	0.326535513639271	0.353618348844206
13	63027774	63044144	3	gain	AAB	0.485535	germline	1	0.000108164977867877	9.21339810243671e-05
13	63044144	63050692	2	neutral	AA	41.1083	somatic	0	0.751599866468338	0.977978088173579
13	63050692	63063788	3	gain	AAB	0.456571	germline	1	0.000541844439973621	0.000699541932861036
13	63063788	63067062	5	gain	AAABB	0.751396	germline	1	0.083270155900831	0.270046522894905
13	64127838	64196592	2	neutral	AA	100	somatic	0	0.100166191602845	0.266732397179193
13	66809244	66815792	2	neutral	AA	100	somatic	0	0.381944088373784	0.435681407494476
13	71903588	71906862	0	loss	-	-1	germline	1	0.0832653219860785	0.270038127292233
13	75383850	75616304	2	neutral	AA	30.5855	somatic	0	0.725319049026348	0.293927041640448
13	79705530	79787380	2	neutral	AA	18.6683	somatic	0	0.486973873757465	0.437027028899179
13	81447298	81453846	2	neutral	AA	100	somatic	0	0.209356377690638	0.519180774341009
13	95057316	95073686	2	neutral	AA	66.2376	somatic	0	0.343615008437103	0.0917718235214272
13	98599784	98606332	1	loss	A	-1	germline	1	0.0145606778315497	0.0373947302229819
13	101241902	101245176	1	loss	A	-1	germline	1	0.0832733786369578	0.27005212006921
13	105678172	105724008	2	neutral	AA	100	somatic	0	0.325831905062933	0.351653537068939
13	111427316	111433864	2	neutral	AA	28.687	somatic	0	0.398424312631272	0.780648758808998
13	114154558	114157832	1	loss	A	-1	somatic	0	0.0834766147891869	0.270404912782064
14	0	16091710	4	gain	AAAB	-1	somatic	0	NA	NA
14	16091710	16094984	5	gain	-	-1	somatic	0	0.083270155900831	0.270046522894905
14	16094984	18488278	4	gain	AAAB	-1	somatic	0	NA	NA
14	18491552	18658526	4	gain	AAAB	-1	somatic	0	NA	NA
14	18658526	18661800	5	gain	AAABB	49.6376	germline	1	0.083270155900831	0.270046522894905
14	18661800	18681444	4	gain	AAAB	-1	somatic	0	NA	NA
14	18694540	19748768	4	gain	AAAB	-1	somatic	0	NA	NA
14	19748768	19958304	4	gain	AAAB	0.784285	germline	1	2.54037291917406e-23	0
14	23209386	23248674	2	neutral	AA	56.8184	somatic	0	0.399337068807302	0.704349925515801
14	34347534	34350808	1	loss	A	-1	germline	1	0.0832741843367763	0.270053519376017
14	35136568	35146390	1	loss	A	-1	germline	1	0.00270664697323006	0.00496788881284671
14	37749220	37795056	2	neutral	AA	100	somatic	0	0.484502260499884	0.712529972241804
14	41141084	41193468	1	loss	A	-1	germline	1	1.98293058978466e-11	1.89293025698589e-13
14	46435142	46651226	2	neutral	AA	44.313	somatic	0	0.0631443743895251	0.0678559267544492
14	69549582	69556130	1	loss	A	-1	germline	1	0.0143532319639239	0.0367096011241526
14	77714938	77750952	2	neutral	AA	100	somatic	0	0.180608684312251	0.378398846843099
14	79646598	79649872	1	loss	A	-1	germline	1	0.083269350232586	0.270045123614563
14	79996916	80098410	2	neutral	AA	54.5686	somatic	0	0.0455141271807744	0.0410878104687397
14	99925754	99929028	8	gain	AAAAABBB	13.2873	germline	1	0.083270155900831	0.270046522894905
14	106873182	106879730	3	gain	-	-1	somatic	0	0.0147489425481154	0.037894983921765
15	0	17080458	5	gain	AAAAB	-1	somatic	0	NA	NA
15	17080458	17083732	16	gain	-	-1	germline	1	0.083266933265738	0.270040925805286
15	17083732	20341362	5	gain	AAAAB	-1	somatic	0	0.493722401851635	0.962272799866976
15	20341362	20344636	9	gain	AAAAAABBB	19.4772	germline	1	0.083269350232586	0.270045123614562
15	20344636	20419938	5	gain	AAAAB	2.17617	germline	1	2.20990477626721e-05	1.22918924937432e-05
15	20645844	20668762	4	gain	AAAB	1.15735	germline	1	4.59661168145048e-06	1.66442662818955e-06
15	25579762	25638694	2	neutral	AA	37.1713	somatic	0	0.446234348806876	0.648103324910811
15	25723818	25756558	2	neutral	AA	40.5415	somatic	0	0.91121894530163	0.939936554901125
15	38528432	38541528	2	neutral	AA	100	somatic	0	0.808995460663872	0.490666020587519
15	41042864	41177098	2	neutral	AA	100	somatic	0	0.0107806976204196	0.0577341842927452
15	45407106	45472586	2	neutral	AA	15.6381	somatic	0	0.383787299938292	0.596039593675684
15	48291500	48314418	2	neutral	AA	36.3962	somatic	0	0.266705339013787	0.596582543912661
15	48425734	48458474	2	neutral	AA	45.7663	somatic	0	0.950189042333109	0.994414456400166
15	57687880	57691154	1	loss	A	-1	somatic	0	0.0832766014741205	0.270057717328196
15	59233208	59383812	2	neutral	AA	36.3786	somatic	0	0.761290048865852	0.715208063068486
15	68832576	68835850	2	neutral	AA	100	somatic	0	0.643195351626586	0.816749649742876
15	69867160	69873708	2	neutral	AA	100	somatic	0	0.553445814608454	0.628534663333377
15	70456480	70512138	2	neutral	AA	100	somatic	0	0.289094382117341	0.224690440486856
15	71415762	71422310	1	loss	A	-1	somatic	0	0.0144428414043842	0.0369897358479186
15	72093480	72096754	1	loss	A	-1	germline	1	0.083266933265738	0.270040925805287
15	76189254	76228542	2	neutral	AA	58.5961	somatic	0	0.299145918873314	0.458567527501507
15	76591956	76595230	0	loss	-	-1	germline	1	0.0832653219860785	0.270038127292233
15	76814588	76827684	2	neutral	AA	100	somatic	0	0.558782288169683	0.728910727223357
15	79437062	79440336	1	loss	A	-1	somatic	0	0.0833676883763526	0.270215874882898
15	82953338	83054832	2	neutral	AA	62.7294	somatic	0	0.967670514562016	0.94513060122898
15	83676892	83719454	2	neutral	AA	100	somatic	0	0.177323815781577	0.381007142648797
15	89769806	89802546	2	neutral	AA	100	germline	1	0.596681876240545	0.39176667510972
15	93459604	93492344	2	neutral	AA	54.5678	somatic	0	0.721944246364114	0.952143567071576
15	99876644	99879918	1	loss	A	-1	somatic	0	0.0833136713641251	0.270122091893194
15	100708240	100711514	3	gain	AAA	15.2299	somatic	0	0.0832959406189673	0.270091302660461
16	36014	85124	2	neutral	AA	11.3538	somatic	0	1.03669963516995e-07	4.85491409296657e-08
16	818500	821774	3	gain	AAB	100	somatic	0	0.0833007759735709	0.270099699469877
16	1024762	1028036	5	gain	AAABB	26.3885	germline	1	0.083270155900831	0.270046522894905
16	1358710	1368532	2	neutral	AA	100	somatic	0	0.532776209535738	0.512284060047089
16	7310842	7317390	2	neutral	AA	54.5678	somatic	0	0.397911532273973	0.495554232996127
16	8561510	8564784	3	gain	AAB	11.6574	somatic	0	0.0833281806113206	0.270147284989046
16	10349114	10355662	2	neutral	AA	54.5678	somatic	0	0.125842934084572	0.220759782186719
16	11599782	11609604	2	neutral	AA	54.5678	somatic	0	0.578329637685823	0.701440842793033
16	13737704	13806458	2	neutral	AA	49.535	somatic	0	0.255260586388044	0.46644155221358
16	17355474	17398036	2	neutral	AA	100	somatic	0	0.257491085111159	0.291384533362388
16	19234750	19254394	2	neutral	AA	36.7369	somatic	0	0.922269396373367	0.982834865034488
16	21559290	21582208	4	gain	AABB	4.74573	germline	1	4.59608520451388e-06	1.66418313718442e-06
16	22613518	22698642	4	gain	AABB	6.33925	germline	1	4.72620094424814e-18	0
16	23035864	23039138	1	loss	A	-1	somatic	0	0.0832741843367763	0.270053519376017
16	23166824	23173372	2	neutral	AA	36.3933	somatic	0	0.753986865192885	0.58568680543805
16	25979190	26025026	2	neutral	AA	100	somatic	0	0.821645738320365	0.433288148377477
16	28532910	28840666	2	neutral	AA	100	somatic	0	0.0840007719805002	0.319989118501066
16	31312536	31364920	2	neutral	AA	21.4816	somatic	0	0.77657323349869	0.908922592973211
16	34062696	34065970	25	gain	AAAAAAAAAAAAAAAABBBBBBBBB	34.9573	germline	1	0.083266933265738	0.270040925805286
16	34075792	34082340	2	neutral	AA	21.8271	germline	1	0.0159690537610723	0.0405970300080917
16	34082340	34085614	14	gain	AAAAAAAAAABBBB	56.5759	germline	1	0.083266933265738	0.270040925805286
16	34085614	34095436	3	gain	AAA	12.7379	germline	1	0.00346419330982271	0.00768109133370898
16	34095436	34098710	10	gain	AAAAAAABBB	100	germline	1	0.0832677389150395	0.270042325069752
16	34098710	34101984	3	gain	AAB	3.82655	germline	1	0.0832902996592919	0.270081506623631
16	34206752	34210026	2	neutral	AA	6.67264	somatic	0	0.316541849657443	0.561931797554372
16	34210026	34213300	3	gain	AAB	2.02764	germline	1	0.0832838532271596	0.270070311470534
16	34219848	34760058	2	neutral	AA	100	somatic	0	2.97543634248827e-17	6.86228851520809e-13
16	34760058	34959772	3	gain	AAA	47.31	somatic	0	2.76753927538145e-08	2.14191298031352e-08
16	35981260	36089302	2	neutral	AA	1.67967	germline	1	2.56981879507945e-08	8.8816358101429e-07
16	36122042	36125316	5	gain	-	-1	germline	1	0.083270155900831	0.270046522894905
16	36236632	36246454	3	gain	-	-1	germline	1	0.00270251828243163	0.00496127463300866
16	48383172	48415912	2	neutral	AA	36.7159	somatic	0	0.453095057145071	0.539684910516211
16	50000528	50010350	2	neutral	AA	100	somatic	0	0.392837509101945	0.696621942390476
16	54891884	54904980	2	neutral	AA	100	somatic	0	0.346637549674621	0.599036464802055
16	55441916	55455012	2	neutral	AA	36.7923	somatic	0	0.167445473177942	0.18795978269314
16	60647576	60726152	2	neutral	AA	15.886	somatic	0	1.63122884883698e-05	0.000105680373725381
16	65185340	65198436	2	neutral	AA	55.935	somatic	0	0.483940188464602	0.531972289037935
16	70151998	70161820	4	gain	AABB	13.5346	germline	1	0.00270071089488331	0.00495870895095607
16	73442368	73448916	2	neutral	AA	100	somatic	0	0.0486863021208651	0.136862800960752
16	76503558	76506832	1	loss	A	-1	germline	1	0.0832741843367763	0.270053519376017
16	77973584	77993228	2	neutral	AA	55.103	somatic	0	0.313520948283012	0.477874993974601
16	78621836	78631658	2	neutral	AA	54.5678	somatic	0	0.0448420487607672	0.0619061618087432
16	80939828	80949650	1	loss	A	-1	germline	1	0.00284189557913225	0.00542170968145872
16	82154482	82167578	2	neutral	AA	54.5679	somatic	0	0.464642013598242	0.670117527939874
16	88499494	88502768	4	gain	AAAA	25.9553	germline	1	0.0832766014741205	0.270057717328194
17	4298762	4305310	2	neutral	AA	100	somatic	0	0.73241531755686	0.683456842977603
17	5222030	5235126	2	neutral	AA	54.568	somatic	0	0.60006294693546	0.893584548809497
17	7765928	7772476	2	neutral	AA	100	somatic	0	0.0504926721031154	0.123968523765453
17	18910624	18943364	2	neutral	AA	36.4055	somatic	0	0.192795667137582	0.279990173415718
17	19778234	19833892	2	neutral	AA	24.2513	somatic	0	0.419275947715578	0.75532534327554
17	20937230	21114026	2	neutral	AA	38.9229	somatic	0	0.496128837745456	0.423452152821171
17	21290822	21303918	4	gain	AABB	0.236259	germline	1	0.000532267336788016	0.000671163685234455
17	21853950	21860498	5	gain	-	-1	germline	1	0.014308039339202	0.036634880922536
17	21860498	21883416	3	gain	-	-1	germline	1	4.68797288723375e-06	1.74432489596921e-06
17	21883416	21896512	1	loss	A	-1	germline	1	0.000567530471266167	0.000751178451745105
17	21896512	21968540	0	loss	-	-1	germline	1	4.52688988076702e-16	0
17	21968540	21975088	6	gain	AAAABB	-1	germline	1	NA	NA
17	21975088	21978362	21	gain	-	-1	germline	1	0.083266933265738	0.270040925805286
17	21978362	22155158	6	gain	AAAABB	0.260768	germline	1	1.97491414395277e-09	7.55595586099389e-11
17	26784594	26804238	3	gain	-	-1	germline	1	2.22061123551942e-05	1.24025808462269e-05
17	26807512	26827156	4	gain	-	-1	germline	1	0.000107578174271165	9.08627446774002e-05
17	26827156	26876266	3	gain	-	-1	germline	1	7.16384137691908e-11	9.36906108250923e-12
17	26876266	26879540	6	gain	-	-1	germline	1	0.083270155900831	0.270046522894905
17	29027284	29030558	2	neutral	AA	100	somatic	0	0.997945587580402	0.963475646011609
17	30791970	31332180	2	neutral	AA	39.6355	somatic	0	0.00146101863608015	0.000452270801270971
17	33440636	33450458	2	neutral	AA	54.5706	somatic	0	0.274347444336066	0.233596712969936
17	35693148	35696422	2	neutral	AA	100	somatic	0	0.243356301125621	0.485631132976724
17	39111204	39163588	2	neutral	AA	100	somatic	0	0.102065361560263	0.35790473040775
17	40384790	40397886	2	neutral	AA	100	somatic	0	0.447697578041142	0.415280884249734
17	43763558	43766832	2	neutral	AA	100	somatic	0	0.539504627428528	0.748960215002302
17	44162986	44212096	2	neutral	AA	27.284	somatic	0	0.148889627485994	0.54934625301916
17	51971476	51974750	2	neutral	AA	100	somatic	0	0.72459723828187	0.862080012386087
17	53051896	53110828	2	neutral	AA	100	somatic	0	0.409763530901229	0.818029889736974
17	54868966	54875514	2	neutral	AA	100	somatic	0	0.966884870761504	0.938837387425381
17	55756220	55847892	2	neutral	AA	100	somatic	0	0.95584755762585	0.979971387591126
17	59757048	59835624	2	neutral	AA	86.7387	somatic	0	0.150357459862582	0.0458585213881988
17	62582510	62611976	2	neutral	AA	100	somatic	0	0.39093096372895	0.556214297262955
17	64998722	65018366	2	neutral	AA	30.8164	somatic	0	0.614381764623503	0.195448097019709
17	65427616	65447260	2	neutral	AA	100	somatic	0	0.549008573687261	0.905521698900591
17	67987884	67994432	2	neutral	AA	26.0644	somatic	0	0.0792504000998929	0.117095686841918
17	74136456	74172470	2	neutral	AA	44.4888	somatic	0	0.776439709535367	0.697340838074877
17	80861252	80975842	2	neutral	AA	11.0744	somatic	0	0.99595086402166	0.768951550827977
17	82668500	82858392	2	neutral	AA	5.08025	germline	1	0.113782679639374	0.239584232459204
18	40679450	40685998	1	loss	A	-1	germline	1	0.0143245741637396	0.0366747151205995
18	47748016	47761112	2	neutral	AA	100	germline	1	0.430573875125348	0.399784389539109
18	50858316	51103866	2	neutral	AA	100	somatic	0	0.00756295999976732	0.0231590623749365
18	51188990	51319950	2	neutral	AA	18.9948	somatic	0	0.943340080463855	0.349245261678963
18	53405488	53431680	2	neutral	AA	36.3819	somatic	0	0.0952259897569882	0.324439521151418
18	56610734	56614008	2	neutral	AA	100	somatic	0	0.46742313110197	0.694936613969749
18	57278630	57281904	1	loss	A	-1	germline	1	0.083266933265738	0.270040925805287
18	58804314	58840328	2	neutral	AA	100	somatic	0	0.537992959024055	0.498712092995775
18	59193920	59459114	2	neutral	AA	60.067	somatic	0	0.00753808311076478	0.000272778976915689
18	60474054	60493698	2	neutral	AA	100	somatic	0	0.779616589473627	0.997818651451703
18	64543636	64546910	1	loss	A	-1	somatic	0	0.0833612370928527	0.270204675664815
18	69615062	69647802	2	neutral	AA	28.2807	somatic	0	0.151013072915027	0.305574986261294
18	70384452	70391000	2	neutral	AA	54.5678	somatic	0	0.164123087558317	0.352467783232899
18	70770784	70787154	2	neutral	AA	100	somatic	0	0.271028414903319	0.628052782543904
18	71206226	71235692	2	neutral	AA	36.3917	somatic	0	0.218840088530925	0.117985703432829
18	71762806	71808642	2	neutral	AA	34.7849	somatic	0	0.0455243191653695	0.292372393217904
18	72060740	72106576	2	neutral	AA	100	somatic	0	0.738601516509078	0.468732296495756
18	77446470	77469388	2	neutral	AA	61.8071	somatic	0	0.130697081361893	0.208320953380565
18	79198060	79201334	5	gain	AAABB	69.6423	germline	1	0.083270155900831	0.270046522894905
18	80213000	80258836	3	gain	AAB	8.12906	somatic	0	3.32253978533289e-09	9.04052721573123e-10
19	3221616	3237986	2	neutral	AA	12.6629	somatic	0	0.0605035365637966	0.0605875637976825
19	7448350	7451624	10	gain	AAAAAAABBB	12.1431	germline	1	0.0832677389150395	0.270042325069752
19	8885636	8918376	2	neutral	AA	2.21888	germline	1	0.0203992656632277	0.0885425318599615
19	10172318	10211606	2	neutral	AA	36.3786	somatic	0	0.0151311875566035	0.0457245484832562
19	10705980	10794378	2	neutral	AA	65.2964	germline	1	0.00864170710279065	0.0363472301582397
19	11272382	11314944	2	neutral	AA	17.1754	somatic	0	0.00436152207774524	0.00581387308124071
19	12198924	12257856	2	neutral	AA	36.3786	germline	1	0.225650327578941	0.305305366030204
19	12581982	12588530	1	loss	A	-1	germline	1	0.0143208841660375	0.0366758647461115
19	14153502	14169872	2	neutral	AA	27.7347	somatic	0	0.687159009806966	0.994471947536499
19	14935988	14939262	0	loss	-	-1	germline	1	0.0832653219860785	0.270038127292233
19	22957288	22960562	0	loss	-	-1	germline	1	0.083266127622751	0.270039526546114
19	24329094	24381478	4	gain	AABB	0.494462	germline	1	4.27042843678702e-12	2.54241072639161e-14
19	27242954	27292064	2	neutral	AA	45.2148	germline	1	2.62506378671045e-05	0.000634059590263858
19	27292064	27337900	2	neutral	AA	2.39193	germline	1	0.00083113277159922	0.0016667977206859
19	27337900	27341174	5	gain	AAABB	1.81019	germline	1	0.083270155900831	0.270046522894905
19	27341174	27344448	2	neutral	AA	100	germline	1	0.142446303374919	0.361264171832837
19	27344448	27347722	5	gain	AAABB	3.63742	germline	1	0.083270155900831	0.270046522894905
19	27347722	27380462	6	gain	AAAABB	0.144626	germline	1	2.03582541920023e-07	3.04750036317358e-08
19	27380462	27383736	4	gain	AAAB	43.8464	germline	1	0.0832774071991982	0.270059116656172
19	27383736	27400106	6	gain	AAAABB	1.09542	germline	1	0.000107547796393388	9.08271442228159e-05
19	35362474	35369022	1	loss	A	-1	germline	1	0.0143263558420935	0.036671266433228
19	44758854	44804690	2	neutral	AA	27.3776	somatic	0	0.00224245134578302	0.0283867797412169
19	48216198	48258760	2	neutral	AA	100	germline	1	0.0459775790634943	0.11941138651206
19	48668010	48671284	3	gain	AAB	9.07633	somatic	0	0.0832878821998775	0.270077308401524
19	48802244	48815340	2	neutral	AA	21.8274	somatic	0	0.15951297670251	0.577738691678499
19	52279232	52285780	2	neutral	AA	54.5706	somatic	0	0.0849015715939961	0.252855105165153
19	52822716	52855456	1	loss	A	-1	germline	1	9.67140635281658e-07	2.26504822786744e-07
19	53015882	53045348	3	gain	AAB	3.54464	germline	1	9.68448384662934e-07	2.26893267285533e-07
19	53045348	53048622	3	gain	-	-1	germline	1	0.0833217318043435	0.270136087845838
19	53051896	53061718	2	neutral	AA	100	somatic	0	0.0213936924296418	0.099160544133746
19	53428406	53500434	1	loss	A	-1	germline	1	2.02203416564602e-13	4.44089209850063e-16
19	57802470	57809018	2	neutral	AA	100	somatic	0	0.0455680006424531	0.138732118468942
20	65480	68754	4	gain	-	-1	germline	1	0.0832790186682985	0.270061915328006
20	68754	85124	3	gain	-	-1	somatic	0	0.000160531271520359	0.00028770394735933
20	1610808	1614082	0	loss	-	-1	germline	1	0.083266127622751	0.270039526546114
20	2039702	2046250	2	neutral	AA	100	somatic	0	0.0276268407147379	0.0727018170219027
20	17008430	17011704	2	neutral	AA	100	germline	1	0.637720798743015	0.813455845664109
20	19067776	19080872	2	neutral	AA	54.6927	somatic	0	0.572986489046772	0.68042260740892
20	19820796	19824070	2	neutral	AA	54.5678	somatic	0	0.133708887596072	0.348938547927326
20	20351184	20364280	2	neutral	AA	10.3037	somatic	0	0.195264270761687	0.375968071116499
20	21307192	21310466	1	loss	A	-1	germline	1	0.0840911708581138	0.271469522172439
20	22112596	22115870	2	neutral	AA	100	germline	1	0.844607338396322	0.916109792788245
20	26208370	26309864	2	neutral	AA	28.2172	germline	1	0.744112650802143	0.847087012802559
20	26316412	26322960	0	loss	-	-1	germline	1	0.0143063867831119	0.0366322011348167
20	26336056	26381892	2	neutral	AA	3.4963	germline	1	0.0475646303269196	0.03677756885099
20	28781734	28788282	9	gain	-	-1	germline	1	0.0143072766000836	0.0366337324210828
20	28801378	28804652	4	gain	-	-1	germline	1	0.0832733786369578	0.270052120069208
20	28804652	28873406	11	gain	-	-1	germline	1	4.59428057923607e-06	1.66363540787806e-06
20	28873406	29207354	3	gain	-	-1	somatic	0	0.083285464797301	0.270073110227051
20	29213902	29263012	3	gain	-	-1	somatic	0	0.0832902996592919	0.270081506623631
20	29263012	29266286	7	gain	-	-1	germline	1	0.083270155900831	0.270046522894905
20	29266286	29269560	4	gain	-	-1	germline	1	0.0832733786369578	0.270052120069208
20	29269560	29272834	3	gain	-	-1	germline	1	NA	NA
20	29276108	29279382	4	gain	-	-1	germline	1	0.0832725729434541	0.270050720767694
20	29279382	29390698	3	gain	-	-1	germline	1	9.28221204071109e-09	5.66015456726632e-10
20	29891620	29894894	5	gain	-	-1	germline	1	0.083270155900831	0.270046522894905
20	30281226	30284500	4	gain	AAAB	100	germline	1	0.0832725729434541	0.270050720767694
20	30939300	30942574	6	gain	-	-1	germline	1	0.083270155900831	0.270046522894905
20	31165206	31168480	5	gain	-	-1	germline	1	0.083270155900831	0.270046522894905
20	31168480	31184850	3	gain	-	-1	germline	1	0.000108725463152164	9.22591395893235e-05
20	31184850	31188124	23	gain	-	-1	germline	1	0.083266933265738	0.270040925805286
20	31188124	31191398	5	gain	-	-1	germline	1	0.083270155900831	0.270046522894905
20	31233960	31237234	5	gain	AAAAB	62.1541	germline	1	0.083270155900831	0.270046522894905
20	31237234	31240508	3	gain	AAB	100	germline	1	0.0833007759735709	0.270099699469877
20	31240508	31243782	50	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBB	100	germline	1	0.0832653219860785	0.270038127292232
20	31243782	31247056	2	neutral	AA	6.32409	somatic	0	0.0870527742594058	0.276554947317383
20	31744704	31777444	2	neutral	AA	37.3317	germline	1	0.931118586004007	0.842267265170334
20	32003350	32016446	2	neutral	AA	36.3848	somatic	0	0.673217121373414	0.700075520402673
20	34416288	34429384	2	neutral	AA	37.5474	somatic	0	0.449232256254785	0.68352820030471
20	36128590	36148234	2	neutral	AA	36.381	somatic	0	0.123843493698006	0.241503539090748
20	36344674	36400332	2	neutral	AA	37.529	somatic	0	0.219484995182321	0.302133535121551
20	38449856	38456404	2	neutral	AA	36.3915	somatic	0	0.500019021000732	0.79518864359335
20	39435330	39477892	2	neutral	AA	36.3786	somatic	0	0.918126591535241	0.741539811908227
20	41520868	41537238	2	neutral	AA	100	somatic	0	0.850603628495165	0.997139762630799
20	41697664	41710760	2	neutral	AA	36.3801	germline	1	0.555827414515266	0.805992566831948
20	43488542	43511460	2	neutral	AA	100	somatic	0	0.326742238399699	0.447831707494325
20	43642420	43645694	0	loss	-	-1	germline	1	0.0832653219860785	0.270038127292233
20	43851956	43855230	0	loss	-	-1	germline	1	0.083266127622751	0.270039526546114
20	44235014	44238288	2	neutral	AA	100	somatic	0	0.864683000450819	0.923639719044554
20	45646108	45649382	2	neutral	AA	100	somatic	0	0.840757418549026	0.91458123050824
20	45960412	46002974	2	neutral	AA	17.147	somatic	0	0.532909689616036	0.555035159686004
20	46107742	46114290	2	neutral	AA	100	somatic	0	0.766853248492617	0.847207458807296
20	47492644	47515562	2	neutral	AA	54.5873	germline	1	0.14357638083275	0.151623265373764
20	49679676	49682950	2	neutral	AA	100	somatic	0	0.175675271968183	0.40540049061797
20	53644490	53647764	2	neutral	AA	100	somatic	0	0.29220717172148	0.537591814458057
20	55107968	55114516	2	neutral	AA	100	somatic	0	0.139202643554899	0.345605474366343
20	56368458	56378280	2	neutral	AA	13.6421	germline	1	0.0775502139118125	0.131492797303636
20	56735146	56738420	2	neutral	AA	100	somatic	0	0.363063611981274	0.606104247583154
20	60713056	60735974	2	neutral	AA	54.624	somatic	0	0.00402872816515463	0.0144059263191962
20	61374404	61390774	2	neutral	AA	8.78735	somatic	0	0.336876774885737	0.177148430895619
20	62150342	62183082	2	neutral	AA	22.0801	somatic	0	0.339499778281374	0.322852380608734
20	62323864	62343508	2	neutral	AA	27.3732	somatic	0	0.995272158315437	0.75937089532594
20	62608702	62611976	2	neutral	AA	100	somatic	0	0.238380458453882	0.480079067881016
20	62811690	62814964	2	neutral	AA	100	somatic	0	0.170643737686225	0.398952956125727
21	8990404	8996952	9	gain	AAAAAABBB	1.27453	somatic	0	0.0143072766000836	0.0366337324210828
21	9759794	9763068	5	gain	AAABB	100	somatic	0	0.083270155900831	0.270046522894905
21	10519362	10522636	3	gain	AAB	100	somatic	0	0.083285464797301	0.270073110227051
21	10650322	10653596	4	gain	AABB	100	germline	1	0.0832725729434541	0.270050720767694
21	10653596	10669966	6	gain	AAAABB	5.94975	germline	1	0.000107545116381034	9.08200257222491e-05
21	10669966	10689610	5	gain	AAABB	2.25566	germline	1	0.000107545116381034	9.08200257222491e-05
21	10689610	10692884	39	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBB	100	germline	1	0.0832653219860785	0.270038127292232
21	10692884	10696158	14	gain	AAAAAAAAAAAABB	100	germline	1	0.083266933265738	0.270040925805286
21	10696158	10702706	5	gain	AAABB	21.8988	germline	1	0.0143076579651592	0.0366337324210828
21	10702706	10738720	6	gain	AAAABB	0.627079	germline	1	9.2232087423432e-09	5.58262547301069e-10
21	10751816	10755090	14	gain	AAAAAAAAABBBBB	3.24452	germline	1	0.083266933265738	0.270040925805286
21	20141648	20239868	2	neutral	AA	10.6781	somatic	0	0.0368622167313103	0.300865657533131
21	29115682	29177888	2	neutral	AA	10.3139	germline	1	0.520385702388463	0.676854772503973
21	29475822	29485644	2	neutral	AA	54.5678	somatic	0	0.774658165514809	0.766919732111609
21	31093178	31116096	2	neutral	AA	100	somatic	0	0.441075381518091	0.357214410237339
21	31783992	31787266	3	gain	AAB	12.6939	somatic	0	0.0832862705918446	0.27007450961325
21	31918226	31947692	2	neutral	AA	54.5678	somatic	0	0.41796238004894	0.765303462054105
21	35100554	35146390	2	neutral	AA	100	somatic	0	0.783972266024226	0.572849259164195
21	36750650	36757198	2	neutral	AA	54.5678	somatic	0	0.435065196128604	0.709406346248171
21	37660822	37683740	2	neutral	AA	99.5384	somatic	0	0.970253167199094	0.989217731953164
21	38020962	38024236	2	neutral	AA	100	somatic	0	0.881919189095006	0.929793982610843
21	38368006	38407294	2	neutral	AA	100	somatic	0	0.608014410569698	0.850260552045473
21	39310918	39389494	2	neutral	AA	36.4132	somatic	0	0.989265504113595	0.951629205400622
21	41805706	41808980	4	gain	AABB	14.5817	germline	1	0.0832733786369578	0.270052120069208
21	42909044	42912318	2	neutral	AA	100	germline	1	0.413054473556311	0.650328128683579
21	43262636	43265910	3	gain	AAB	19.9175	somatic	0	0.0832919113304786	0.270084305464833
21	43334664	43337938	3	gain	AAA	13.4309	germline	1	0.0832846590090727	0.270071710846146
21	45285968	45341626	2	neutral	AA	8.564	somatic	0	0.00575768587199446	0.0191612521031649
22	10725624	10728898	10	gain	-	-1	germline	1	0.0832677389150395	0.270042325069752
22	11619426	11629248	4	gain	AABB	61.621	germline	1	0.0143107092085971	0.0366406239023671
22	16261958	16265232	3	gain	-	-1	germline	1	0.0833217318043435	0.270136087845838
22	17289994	17293268	1	loss	A	-1	germline	1	0.083329792876234	0.270150084327779
22	17656682	17663230	1	loss	A	-1	germline	1	0.0143357765324843	0.0367172722680746
22	17876040	17879314	3	gain	AAB	29.0094	germline	1	0.0833539798822673	0.270192076949395
22	18105220	18157604	2	neutral	AA	37.6791	somatic	0	0.827343999171351	0.774887651946849
22	18730554	18733828	16	gain	AAAAAAAAAABBBBBB	100	germline	1	0.083266933265738	0.270040925805286
22	20596734	20600008	1	loss	A	-1	germline	1	0.0833378545798295	0.270164081339015
22	28850488	28935612	2	neutral	AA	66.1612	somatic	0	0.0752357805333749	0.217845439790301
22	29118956	29122230	4	gain	AAAB	8.25232	germline	1	0.0832725729434541	0.270050720767694
22	33322772	33434088	2	neutral	AA	28.2704	somatic	0	0.369352403242106	0.338727577361527
22	36747376	36753924	1	loss	A	-1	germline	1	0.0144063502601849	0.0368825414138532
22	38963874	38990066	1	loss	A	-1	germline	1	4.60854809878688e-06	1.66814412616567e-06
22	43498364	43501638	3	gain	AAB	30.0751	germline	1	0.0832935230269273	0.270087104327206
22	43590036	43838860	2	neutral	AA	10.4668	somatic	0	0.177453611515234	0.041371361905587
22	45227036	45243406	2	neutral	AA	52.4609	somatic	0	0.405306493475255	0.746198099612937
22	45325256	45328530	3	gain	AAB	5.67296	germline	1	0.083557375312287	0.270545003056303
22	50642232	50645506	4	gain	AAAA	6.97965	germline	1	0.0832749900429095	0.270054918688115
X	3522824	3526098	3	gain	AAB	24.803	somatic	0	0.0832878821998775	0.270077308401524
X	4953562	4960110	2	neutral	AA	100	somatic	0	0.973462034526648	0.978145052186801
X	5136906	5140180	1	loss	A	-1	germline	1	0.083266127622751	0.270039526546114
X	6944154	6947428	2	neutral	AA	100	somatic	0	0.991755408682721	0.962013632622769
X	10725624	10732172	1	loss	A	-1	germline	1	0.0151013612029151	0.0390209440093578
X	12117074	12123622	2	neutral	AA	100	somatic	0	0.545862386685641	0.613915416859055
X	13921048	13934144	2	neutral	AA	55.1368	somatic	0	0.329851591453973	0.659384319754751
X	15021112	15024386	1	loss	A	-1	germline	1	0.0832975523785721	0.270094101575764
X	19431190	19454108	2	neutral	AA	54.5728	somatic	0	0.645342217615116	0.23364124822662
X	24617206	24630302	2	neutral	AA	54.5693	somatic	0	0.825781126671397	0.622622153993538
X	25700900	25723818	2	neutral	AA	54.5679	somatic	0	0.457456247869323	0.672926835364587
X	26083958	26087232	0	loss	-	-1	germline	1	0.0832653219860785	0.270038127292233
X	28120386	28166222	2	neutral	AA	54.5681	somatic	0	0.654004322962148	0.742826059901602
X	28428142	28791556	2	neutral	AA	71.2627	somatic	0	0.367538659797929	0.28305475591075
X	30749408	30788696	2	neutral	AA	32.4984	somatic	0	0.369227486376815	0.435956424243656
X	30788696	30805066	3	gain	AAB	7.92849	somatic	0	0.000127256913059141	0.000136987426213264
X	30805066	30821436	2	neutral	AA	36.8773	somatic	0	0.655438811610254	0.637410906726417
X	32032816	32042638	2	neutral	AA	54.8594	somatic	0	0.797420930963213	0.886047693964381
X	32517368	32556656	2	neutral	AA	100	somatic	0	0.285149170951276	0.558443111252082
X	43409966	43488542	2	neutral	AA	100	somatic	0	0.888380780719354	0.895337734824749
X	43966546	44107328	2	neutral	AA	93.3639	somatic	0	0.135277527387859	0.166801304202534
X	46350018	46379484	2	neutral	AA	54.579	somatic	0	0.597939341583965	0.883011740631453
X	47833140	47856058	2	neutral	AA	100	somatic	0	0.814617966993131	0.935476383900019
X	48687654	49142740	2	neutral	AA	2.36125	somatic	0	0.78381293365534	0.731918365454109
X	50727356	50766644	2	neutral	AA	100	somatic	0	0.04701438782515	0.0692626531271177
X	52361082	52508412	2	neutral	AA	100	somatic	0	0.0283901475704821	0.0388393801546335
X	55674370	55677644	1	loss	A	-1	germline	1	0.0832838532271596	0.270070311470536
X	57249164	57304822	2	neutral	AA	70.7222	somatic	0	0.133635672923329	0.167891276496409
X	57304822	57308096	1	loss	A	-1	somatic	0	0.0845029056902266	0.272180956887343
X	58444174	62690552	2	neutral	AA	4.51164	somatic	0	3.1156924501196e-06	9.29344915069352e-05
X	68930796	68953714	2	neutral	AA	21.8272	somatic	0	0.249541295885998	0.188649816602188
X	70292780	70312424	2	neutral	AA	100	somatic	0	0.112306218403252	0.204550514987337
X	70914840	70921388	1	loss	A	-1	somatic	0	0.0144711941335681	0.037067409374659
X	86119296	86145488	2	neutral	AA	100	somatic	0	0.226927100457029	0.241317426003346
X	87586048	87615514	2	neutral	AA	54.5679	somatic	0	0.480253983135931	0.420130818986828
X	96478232	96497876	2	neutral	AA	100	somatic	0	0.61338873211475	0.546052008893905
X	96668124	96674672	2	neutral	AA	100	somatic	0	0.216213310914021	0.600200751068821
X	98141424	98151246	2	neutral	AA	100	somatic	0	0.704754140329588	0.832666703360549
X	105612692	105642158	2	neutral	AA	100	somatic	0	0.691328942729267	0.456542535958961
X	109223914	109269750	2	neutral	AA	36.7142	somatic	0	0.108318156160643	0.168288882046958
X	109787042	109803412	2	neutral	AA	100	somatic	0	0.157161465831439	0.0628821978080768
X	116004368	116194260	2	neutral	AA	36.5722	germline	1	0.504143197460009	0.146558603709259
X	116289206	116351412	2	neutral	AA	100	germline	1	0.631776060728458	0.743052207515932
X	116675538	116691908	2	neutral	AA	18.2614	somatic	0	0.625931915460046	0.903917898685932
X	116799950	116832690	2	neutral	AA	100	somatic	0	0.708200931053925	0.554132951613081
X	119487904	119497726	2	neutral	AA	100	somatic	0	0.588382648800883	0.870789827654474
X	119740002	119743276	0	loss	-	-1	germline	1	0.0832653219860785	0.270038127292233
X	119923346	119939716	2	neutral	AA	36.3944	germline	1	0.524088499001409	0.190055994725064
X	123246456	123266100	2	neutral	AA	54.7239	somatic	0	0.548994408669807	0.772736779943701
X	130102212	130105486	2	neutral	AA	100	somatic	0	0.0923698104828958	0.28551049491491
X	130328118	130383776	2	neutral	AA	54.5678	somatic	0	0.905336380355279	0.849475298726222
X	131133522	131140070	1	loss	A	-1	somatic	0	0.0144427132229071	0.0369862612610913
X	140608478	140624848	2	neutral	AA	100	somatic	0	0.271271540861349	0.307798139563887
X	140723068	140726342	4	gain	AAAB	100	germline	1	0.0832774071991982	0.270059116656172
X	141787118	141793666	1	loss	A	-1	somatic	0	0.014370068066266	0.0367606405831686
X	145339408	145342682	1	loss	A	-1	germline	1	0.083266933265738	0.270040925805287
X	148181240	148371132	2	neutral	AA	100	somatic	0	0.436624582060195	0.641668680232614
X	148397324	148426790	2	neutral	AA	100	somatic	0	0.97538295254846	0.856366228714512
X	148426790	148430064	1	loss	A	-1	germline	1	0.0832733786369578	0.27005212006921
X	153380352	153393448	2	neutral	AA	100	somatic	0	0.246926308571078	0.298591910099744
X	155560836	155567384	1	loss	A	-1	germline	1	0.0143587145400984	0.036746051549618
