chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	1316601	1434213	2	neutral	AA	30.1252	somatic	0	0.568050063430562	0.768600482891109
1	3025242	3057912	2	neutral	AA	6.61674	somatic	0	0.487747529415912	0.691408863415638
1	3577365	3593700	2	neutral	AA	3.90049	somatic	0	0.360464948535706	0.413193202241097
1	5668245	5678046	4	gain	AABB	0.909463	somatic	0	0.00270265637840841	0.00496321717784665
1	13564584	13603788	2	neutral	AA	27.2876	somatic	0	0.808791891429706	0.637067973249869
1	14649228	14662296	2	neutral	AA	27.3831	somatic	0	0.159048580291284	0.34026632952898
1	16612695	16632297	8	gain	AAAAABBB	24.9879	germline	1	0.00270043271811757	0.00495824234041686
1	16720506	16723773	4	gain	AAAB	7.31609	germline	1	0.0832814301492767	0.270066103523219
1	16903458	16942662	3	gain	AAB	1.0187	germline	1	9.68627900682862e-07	2.26362424804449e-07
1	28243215	28266084	2	neutral	AA	100	somatic	0	0.241113781315634	0.32758504261643
1	31549419	31555953	2	neutral	AA	100	somatic	0	0.240026814011045	0.297853191037967
1	32147280	32166882	2	neutral	AA	54.5678	somatic	0	0.713650466430586	0.826268546649967
1	32454378	32676534	2	neutral	AA	32.1728	somatic	0	1.38897425971504e-05	0.0011659509126859
1	35639703	35678907	2	neutral	AA	100	somatic	0	0.136098576087897	0.0568389785812203
1	47237553	47397636	2	neutral	AA	27.2847	somatic	0	0.10746783007619	0.135747918360782
1	52726113	52739181	2	neutral	AA	36.3786	somatic	0	0.106595826459845	0.0747517147240325
1	57705021	57727890	2	neutral	AA	36.9088	somatic	0	0.563114729031528	0.824760625337193
1	61455537	61471872	2	neutral	AA	36.38	somatic	0	0.4985452415702	0.804945605908105
1	64549386	64562454	2	neutral	AA	80.4706	somatic	0	0.996895087256976	0.884758784559552
1	65366136	65375937	2	neutral	AA	100	somatic	0	0.231369601798118	0.624660922833816
1	72922707	72939042	2	neutral	AA	100	germline	1	0.718268781581692	0.952824116231491
1	78862113	79058133	2	neutral	AA	62.4649	somatic	0	0.000209546038905404	0.00849272774550691
1	88826463	89042085	2	neutral	AA	12.4508	somatic	0	0.377365548954727	0.428414936970944
1	93364326	93485205	2	neutral	AA	24.9245	somatic	0	0.114346958886776	0.277270791031573
1	94654791	96490845	2	neutral	AA	9.82316	somatic	0	0.00327384904147735	0.0139123431061451
1	99313533	99584694	2	neutral	AA	27.403	somatic	0	0.951057220061878	0.908917697219704
1	99712107	99787248	2	neutral	AA	100	somatic	0	0.186743963975572	0.391396521002023
1	100221759	100372041	2	neutral	AA	36.7139	somatic	0	0.274567283212927	0.194389002557857
1	101375010	101551428	2	neutral	AA	46.2197	somatic	0	0.056122627657659	0.165107445667477
1	101551428	101554695	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
1	102335508	102413916	2	neutral	AA	100	somatic	0	0.255243692667507	0.230683369500192
1	103361346	103367880	4	gain	-	-1	somatic	0	0.0143109617711034	0.0366390896026536
1	103397283	103416885	2	neutral	AA	54.5787	somatic	0	0.861733041591684	0.779170854072578
1	103560633	103616172	3	gain	AAB	11.9545	germline	1	2.05265998066099e-07	3.08917748048643e-08
1	110058696	110075031	2	neutral	AA	100	somatic	0	0.872114010636964	0.673133328839543
1	125080362	125083629	10	gain	-	-1	germline	1	0.0832717648072304	0.270049317386581
1	125155503	125162037	3	gain	-	-1	germline	1	0.0257859532178205	0.0726779062117695
1	125162037	125165304	5	gain	-	-1	germline	1	0.0832725702176933	0.270050716202211
1	147194685	147243690	2	neutral	AA	100	somatic	0	0.0380819336261711	0.0657612658791016
1	151392780	151487523	2	neutral	AA	49.4692	somatic	0	0.049410802985356	0.055415211064805
1	151569198	151663941	2	neutral	AA	100	somatic	0	0.250509742848729	0.528503949189298
1	152787789	152797590	1	loss	A	-1	somatic	0	0.00270525276334659	0.00496516171612893
1	156374955	156381489	2	neutral	AA	54.5678	somatic	0	0.0847891048739478	0.116859580934872
1	158897079	158900346	0	loss	-	-1	somatic	0	0.0832661271106778	0.270039525825271
1	167499090	167531760	2	neutral	AA	36.4391	somatic	0	0.568430386225519	0.903706327263076
1	169256736	169273071	1	loss	A	-1	somatic	0	0.000108313896944309	9.13814361735987e-05
1	172428993	172487799	2	neutral	AA	43.8421	somatic	0	0.0199180309994764	0.0150475717286987
1	172729557	172798164	2	neutral	AA	100	germline	1	0.247303619033354	0.645943505604438
1	182305134	182328003	2	neutral	AA	27.9806	somatic	0	0.0168464637783295	0.0233754685228053
1	187303644	187450659	2	neutral	AA	100	somatic	0	0.271296373565732	0.173089851375792
1	188999217	189025353	2	neutral	AA	36.3786	somatic	0	0.021714323845578	0.154631778784084
1	194562918	194664195	2	neutral	AA	94.4782	somatic	0	2.53538361214896e-05	0.00187268964158638
1	202047615	202054149	2	neutral	AA	54.5678	somatic	0	0.13313852292186	0.158936320951732
1	202883967	202942773	2	neutral	AA	47.9058	somatic	0	0.0861554309056365	0.159091534822296
1	220035717	221169366	2	neutral	AA	9.58952	somatic	0	0.72105347743424	0.359874682171538
1	224011656	224014923	7	gain	AAAAAAA	0.973521	germline	1	0.0832725702176933	0.270050716202211
1	224096598	224109666	2	neutral	AA	54.5682	somatic	0	0.775257578613161	0.396442427409337
1	234776421	234782955	7	gain	AAAAABB	4.76888	germline	1	0.014308419862022	0.0366348796077093
1	234835227	234841761	2	neutral	AA	100	somatic	0	0.28472238202908	0.721635912652817
1	234988776	235008378	2	neutral	AA	11.0028	somatic	0	0.876453641712737	0.788351774063499
1	236096289	236099556	4	gain	AAAB	63.0046	somatic	0	0.0832814301492767	0.270066103523219
1	240183306	240186573	5	gain	AAABB	26.8017	somatic	0	0.0832725702176933	0.270050716202211
1	241418232	241496640	2	neutral	AA	52.2891	somatic	0	0.543252505460194	0.491756531061324
2	908226	918027	3	gain	AAA	100	somatic	0	0.051136379285596	0.158175393573514
2	1163052	1166319	2	neutral	AA	100	somatic	0	0.815757412352084	0.904516630120519
2	3136320	3139587	2	neutral	AA	100	somatic	0	0.36769786524412	0.610304254001091
2	3178791	3182058	6	gain	AAAABB	27.2828	germline	1	0.0832725702176933	0.270050716202211
2	3182058	3185325	2	neutral	AA	72.5185	somatic	0	0.790735345829158	0.893669306069874
2	3374811	3378078	2	neutral	AA	100	somatic	0	0.580884905461498	0.777354437762601
2	4760019	4763286	2	neutral	AA	100	somatic	0	0.671767519803236	0.833472993397687
2	5570235	5576769	2	neutral	AA	54.5873	somatic	0	0.661765019347457	0.948173814485625
2	5831595	5851197	2	neutral	AA	54.5873	somatic	0	0.0162720277163668	0.0419728760536496
2	5923071	5929605	2	neutral	AA	18.1907	somatic	0	0.0470988417486417	0.108396889650218
2	6877035	6880302	2	neutral	AA	100	somatic	0	0.375199902961157	0.617144286040895
2	8683686	8686953	2	neutral	AA	100	somatic	0	0.103412572282486	0.303439181481052
2	9003852	9082260	2	neutral	AA	21.8356	somatic	0	0.0649430281893994	0.274149349796005
2	9392625	9395892	2	neutral	AA	100	somatic	0	0.16328199841899	0.389363223381817
2	9882675	9902277	2	neutral	AA	100	somatic	0	0.0699798838214964	0.207655183133988
2	9908811	9912078	2	neutral	AA	100	somatic	0	0.387685461148753	0.628258907171701
2	10042758	10046025	2	neutral	AA	50.6045	somatic	0	0.432030364541377	0.666249784636423
2	11111067	11150271	2	neutral	AA	22.074	somatic	0	0.439838292371182	0.627516597133622
2	11218878	11238480	2	neutral	AA	100	somatic	0	0.160894003621601	0.507735603648057
2	11486772	11522709	2	neutral	AA	36.5728	somatic	0	0.0405748271486081	0.0631190077883964
2	12280653	12283920	2	neutral	AA	100	somatic	0	0.309451984618121	0.554973865459738
2	13492710	13535181	2	neutral	AA	54.5785	somatic	0	0.888967840515849	0.973098413219824
2	13544982	13564584	2	neutral	AA	100	somatic	0	0.427403019575116	0.594676218875412
2	16142247	16145514	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
2	34470117	34506054	1	loss	A	-1	germline	1	4.40057007878229e-08	4.28916124839418e-09
2	51546726	51549993	77	gain	-	-1	somatic	0	0.0832661271106778	0.270039525825263
2	68515524	68518791	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
2	76068828	76072095	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
2	89773893	89826165	5	gain	-	-1	somatic	0	1.97502476084755e-11	1.87627691161651e-13
2	89826165	89842500	26	gain	-	-1	germline	1	0.000107546891005595	9.08223907551964e-05
2	89842500	89852301	4	gain	-	-1	germline	1	0.00270133587840616	0.0049592524841795
2	91410660	91413927	5	gain	-	-1	somatic	0	0.0832749864869443	0.270054912680835
2	103390749	103394016	5	gain	-	-1	somatic	0	0.0832782082676257	0.270060508059715
2	109196208	109202742	6	gain	-	-1	germline	1	0.014308419862022	0.0366348796077093
2	125684757	125694558	1	loss	A	-1	somatic	0	0.00271440459640225	0.00498948836561275
2	132238359	132244893	3	gain	-	-1	somatic	0	0.0187855404553408	0.0503892504020746
2	136344978	136348245	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
2	146106774	146119842	1	loss	A	-1	somatic	0	0.000534448664736426	0.000674452464612618
2	150023907	150027174	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
2	154937475	154940742	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
2	166822821	166826088	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
2	169465824	169469091	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
2	172040220	172046754	1	loss	A	-1	somatic	0	0.0143252038246613	0.0366815959715586
2	175539177	175545711	1	loss	A	-1	somatic	0	0.0143189713885697	0.0366551680226764
2	180701037	180704304	4	gain	-	-1	somatic	0	0.0832822356354662	0.270067502402318
2	193824576	193827843	0	loss	-	-1	germline	1	0.0832653217506967	0.270038127051953
2	228262023	228265290	4	gain	-	-1	somatic	0	0.0832822356354662	0.270067502402318
2	238971249	238974516	2	neutral	AA	100	somatic	0	0.75668517717285	0.877952206067661
2	239098662	239101929	2	neutral	AA	100	somatic	0	0.959859534891034	0.953914273935266
2	240611283	240614550	2	neutral	AA	100	somatic	0	0.98328460814116	0.959972310086432
2	241287552	241290819	2	neutral	AA	100	somatic	0	0.509858365497246	0.72743432783936
2	241421499	241519509	2	neutral	AA	24.7987	somatic	0	0.134724760122832	0.079335956529248
3	186219	192753	1	loss	A	-1	somatic	0	0.0143598437317778	0.0367755690719299
3	9797733	9804267	2	neutral	AA	54.5678	somatic	0	0.486520964078745	0.465507825800242
3	19543194	19696743	2	neutral	AA	96.9107	somatic	0	0.0352206521793517	0.100476400124192
3	25988985	26093529	2	neutral	AA	19.4831	somatic	0	0.76219600325096	0.862650299341456
3	29968191	30026997	2	neutral	AA	39.0303	somatic	0	0.641314963259721	0.872022224187336
3	34702074	34705341	5	gain	AAABB	32.1985	somatic	0	0.0832757919226488	0.270056311517622
3	35263998	35283600	2	neutral	AA	100	germline	1	0.850751601332959	0.841503708257501
3	41520303	41530104	2	neutral	AA	100	somatic	0	0.0882303788278231	0.0666328373168005
3	45163008	45179343	2	neutral	AA	100	germline	1	0.470363425701513	0.492666163694797
3	46838979	47028465	2	neutral	AA	100	somatic	0	0.0260896915087399	0.0591674135836762
3	47822346	47832147	2	neutral	AA	54.5678	somatic	0	0.428557569971776	0.516668137012814
3	49279428	49285962	2	neutral	AA	60.6908	somatic	0	0.563067224853609	0.477752235156739
3	51014205	51017472	4	gain	AABB	78.8673	somatic	0	0.0832822356354662	0.270067502402318
3	53069148	53088750	2	neutral	AA	100	somatic	0	0.189292723878458	0.441332572762685
3	57763827	57812832	2	neutral	AA	100	somatic	0	0.696899840892086	0.544985729557063
3	58564242	58609980	2	neutral	AA	57.4332	somatic	0	0.689811195791913	0.335467910459355
3	60628986	60635520	2	neutral	AA	41.6757	somatic	0	0.194744315919529	0.320699847559424
3	65202786	65228922	1	loss	A	-1	germline	1	2.22270982726342e-05	1.24208163128081e-05
3	69008841	69012108	2	neutral	AA	100	somatic	0	0.159368689698168	0.384208585141302
3	80952993	81073872	2	neutral	AA	22.9078	somatic	0	0.157609867760484	0.0347326913604988
3	90290079	93798837	2	neutral	AA	0.588387	germline	1	2.77475198406817e-60	0
3	93798837	93811905	2	neutral	AA	-1	germline	1	NA	NA
3	93811905	93942585	2	neutral	AA	27.2876	germline	1	0.063846682387028	0.0676906846879729
3	96618258	96621525	3	gain	AAB	46.7027	somatic	0	0.083287874215496	0.270077294704104
3	99764379	99819918	2	neutral	AA	36.7139	somatic	0	0.503965165176951	0.382770899189034
3	100548459	100613799	2	neutral	AA	21.8815	somatic	0	0.990547045196267	0.490445689169622
3	104249970	104266305	2	neutral	AA	100	somatic	0	0.318990633973963	0.460306523227712
3	108431730	108451332	2	neutral	AA	100	somatic	0	0.192020186689512	0.442562107609927
3	113841882	113917023	2	neutral	AA	100	somatic	0	0.453889783069363	0.30165599783776
3	121774158	121826430	2	neutral	AA	54.8425	somatic	0	0.520244259134758	0.618757888814741
3	128683863	128696931	3	gain	AAB	5.99865	somatic	0	0.000535228634343382	0.00067690781563956
3	130585257	131470614	2	neutral	AA	100	somatic	0	3.19219145773732e-05	3.25475168032607e-05
3	132042339	132061941	2	neutral	AA	36.3801	somatic	0	0.125222547511878	0.433405453621026
3	135577233	135596835	2	neutral	AA	54.5704	somatic	0	0.0434771546889938	0.0474834185893089
3	137374083	137439423	2	neutral	AA	57.6363	somatic	0	0.758678908461657	0.96435845469296
3	137498229	137615841	2	neutral	AA	33.9256	somatic	0	0.00322126579305896	0.0049637807975067
3	143447436	143450703	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
3	145051533	145080936	2	neutral	AA	100	somatic	0	0.870544017885939	0.537451675510345
3	145718001	145721268	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
3	146312595	146322396	2	neutral	AA	54.6128	somatic	0	0.216458231254122	0.628455507715922
3	146665431	146675232	1	loss	A	-1	somatic	0	0.0143280028395458	0.0366727848035729
3	153722151	153758088	2	neutral	AA	65.1408	somatic	0	0.652941070522623	0.331697918049593
3	155064888	155081223	2	neutral	AA	54.5873	somatic	0	0.435403879608888	0.669097803912027
3	155603943	155613744	2	neutral	AA	100	somatic	0	0.510187360538794	0.948563644275747
3	162794610	162908955	1	loss	A	-1	germline	1	5.70933062054616e-24	0
3	173278413	173298015	2	neutral	AA	100	somatic	0	0.833426107870246	0.281943641662922
3	173330685	173337219	2	neutral	AA	100	somatic	0	0.0972985414168431	0.164388218048906
3	173856672	173863206	2	neutral	AA	100	somatic	0	0.747125343853743	0.701596122597129
3	176221980	176225247	4	gain	-	-1	somatic	0	0.0832862631610759	0.270074496877149
3	182788650	183089214	2	neutral	AA	100	somatic	0	0.579019199242955	0.5588129260392
3	183840624	183876561	2	neutral	AA	22.9198	somatic	0	0.970016061068909	0.665296736652711
3	191704293	191776167	2	neutral	AA	31.7325	somatic	0	0.870964053891173	0.984171029736395
3	193164642	193167909	0	loss	-	-1	germline	1	0.0832653217506967	0.270038127051953
3	195546285	195572421	2	neutral	AA	54.5678	somatic	0	0.691275547268405	0.615812006567545
4	7863669	7866936	5	gain	-	-1	somatic	0	0.0832790137285725	0.270061906917657
4	10209375	10232244	1	loss	A	-1	germline	1	4.65394361228148e-06	1.70126651910518e-06
4	12666159	12669426	4	gain	-	-1	somatic	0	0.0832798191958299	0.270063305780889
4	31814046	31817313	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
4	40291911	40298445	3	gain	-	-1	somatic	0	0.0143323295387132	0.0366923251107045
4	43451100	43454367	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
4	63846981	63850248	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
4	68518791	68623335	1	loss	A	-1	germline	1	9.73142914849025e-15	0
4	70619472	70622739	0	loss	-	-1	germline	1	0.0832653217506967	0.270038127051953
4	74559474	74562741	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
4	80799444	80802711	22	gain	-	-1	somatic	0	0.0832709594030779	0.27004791857624
4	167221395	167224662	4	gain	-	-1	somatic	0	0.0832854576433322	0.270073097971604
5	414909	686070	2	neutral	AA	17.3134	germline	1	0.0292889458612752	0.0891227065160914
5	757944	764478	3	gain	AAB	3.95139	somatic	0	0.0143147753816196	0.0366475108624472
5	4969107	4998510	2	neutral	AA	54.7289	somatic	0	0.80163316859359	0.722399255372193
5	7108992	7213536	2	neutral	AA	27.3761	somatic	0	0.549856620420928	0.506424953495444
5	7661115	7801596	2	neutral	AA	18.4942	somatic	0	0.57158710823656	0.582455877973091
5	11784069	11842875	2	neutral	AA	100	somatic	0	0.516273392549439	0.463518527044181
5	18030573	18040374	2	neutral	AA	100	somatic	0	0.955825275609617	0.914924602519356
5	23365584	23375385	2	neutral	AA	100	somatic	0	0.845932037428547	0.99741288391305
5	28230147	28233414	3	gain	AAB	95.5942	somatic	0	0.083287874215496	0.270077294704104
5	33973533	34019271	2	neutral	AA	55.0709	somatic	0	0.91965702755001	0.692417870775584
5	35391411	35767116	2	neutral	AA	13.955	somatic	0	0.000148772831271403	4.60371617202471e-05
5	42199839	42212907	2	neutral	AA	54.5678	somatic	0	0.323185667108528	0.316303571343367
5	45002925	45012726	1	loss	A	-1	germline	1	0.00273232506134789	0.0050513368933478
5	45372096	45375363	0	loss	-	-1	germline	1	0.0832653217506967	0.270038127051953
5	49599594	49602861	210	gain	-	-1	germline	1	0.0832653217506967	0.270038127051945
5	50645034	50648301	4	gain	AAAB	30.2066	somatic	0	0.0832822356354662	0.270067502402318
5	58028454	58038255	1	loss	A	-1	germline	1	0.00271073117984272	0.00497894903443363
5	60841341	60860943	2	neutral	AA	54.5777	somatic	0	0.0333040574012862	0.0731628595763248
5	72298710	72305244	2	neutral	AA	100	germline	1	0.735226903250962	0.913016848770488
5	77663124	77679459	2	neutral	AA	100	somatic	0	0.204851616575656	0.451010989960305
5	84651237	84661038	1	loss	A	-1	germline	1	0.0143409863946564	0.0367333510469878
5	86918535	86921802	0	loss	-	-1	germline	1	0.0832653217506967	0.270038127051953
5	91201572	91208106	1	loss	A	-1	somatic	0	0.0143743838859869	0.036776337065125
5	92345022	92348289	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
5	96909021	96918822	2	neutral	AA	54.5685	somatic	0	0.0880512160723604	0.323863394653555
5	104573403	104668146	2	neutral	AA	10.3494	somatic	0	0.716800657729519	0.801095473324748
5	106072956	106076223	6	gain	-	-1	somatic	0	0.0832725702176933	0.270050716202211
5	113707935	113717736	2	neutral	AA	21.8271	somatic	0	0.663197789847918	0.949639680259769
5	125612883	125616150	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
5	127154907	127230048	2	neutral	AA	22.6665	somatic	0	0.126276245442318	0.219014168262359
5	135753651	135760185	1	loss	A	-1	somatic	0	0.0143324568120161	0.0367030569953395
5	137517831	137521098	1	loss	A	-1	somatic	0	0.0832701540052356	0.270046519771196
5	144316458	144381798	2	neutral	AA	62.1901	somatic	0	0.618664773871875	0.913622197411377
5	152696313	152699580	4	gain	AAAB	100	somatic	0	0.0832862631610759	0.270074496877149
5	174653820	174712626	2	neutral	AA	100	somatic	0	0.0314763511850004	0.0402778889975093
5	178584021	178587288	4	gain	AABB	18.7805	somatic	0	0.0832862631610759	0.270074496877149
5	180949329	181001601	1	loss	A	-1	germline	1	4.4653704021433e-12	3.10862446895044e-14
6	258093	382239	4	gain	AABB	0.386915	germline	1	2.71049690759082e-25	0
6	392040	424710	2	neutral	AA	98.8544	somatic	0	0.514528242429351	0.645626209119154
6	4929903	4959306	2	neutral	AA	100	somatic	0	0.523124009451108	0.714255010778457
6	5116122	5142258	2	neutral	AA	19.8277	somatic	0	0.445294190194304	0.28827947540389
6	5547366	5583303	2	neutral	AA	54.5679	somatic	0	0.747714671446255	0.919515606665278
6	7007715	7213536	2	neutral	AA	18.446	somatic	0	0.374734345842824	0.241008700592585
6	12790305	12829509	2	neutral	AA	100	somatic	0	0.00704600891757204	0.0291834202714605
6	13244418	13277088	2	neutral	AA	100	somatic	0	0.295096833992015	0.45724987847045
6	13394700	13672395	2	neutral	AA	26.1908	somatic	0	0.176418454924964	0.230960797066966
6	15106608	15237288	2	neutral	AA	26.5761	somatic	0	0.226726051713561	0.400896687005572
6	21336777	21346578	2	neutral	AA	18.1995	somatic	0	0.444744051480439	0.781033966604749
6	26505171	26534574	2	neutral	AA	100	somatic	0	0.355504434733885	0.828185368314269
6	27769500	27968787	2	neutral	AA	100	somatic	0	0.0542497836131042	0.0716395680504661
6	28471905	28507842	2	neutral	AA	100	somatic	0	0.659995085441107	0.873978729388134
6	32487048	32562189	1	loss	A	-1	germline	1	2.20379275610018e-11	4.69513317113979e-13
6	35786718	35799786	5	gain	AAABB	5.89183	germline	1	0.000532307527420223	0.000671233720672904
6	35907597	35914131	2	neutral	AA	54.5678	somatic	0	0.698793529500915	0.967647521182802
6	40984515	41053122	2	neutral	AA	36.3786	somatic	0	0.338697567706156	0.695255694264722
6	46146375	46182312	2	neutral	AA	36.8952	somatic	0	0.895942420982704	0.736026354916871
6	48831849	48835116	4	gain	AABB	37.5895	somatic	0	0.0832822356354662	0.270067502402318
6	53800956	53814024	2	neutral	AA	54.5679	somatic	0	0.195471079478056	0.573803827944594
6	53961039	53967573	2	neutral	AA	100	somatic	0	0.969343098512125	0.942847083612874
6	54062316	54072117	1	loss	A	-1	somatic	0	0.00287446233619864	0.00552548523246221
6	57048354	57087558	3	gain	AAB	7.23382	germline	1	2.09040763827478e-09	1.04617314811151e-10
6	60230412	60236946	4	gain	-	-1	somatic	0	0.0143128684643189	0.0366417689107339
6	60236946	60240213	5	gain	-	-1	somatic	0	0.0832782082676257	0.270060508059715
6	61514343	61520877	2	neutral	AA	27.2839	somatic	0	0.0197421831228517	0.0513822845847588
6	61527411	61553547	2	neutral	AA	54.5678	somatic	0	0.994966515141195	0.645114604214975
6	64307628	64353366	2	neutral	AA	100	somatic	0	0.31354492185044	0.168450789737483
6	65006766	65016567	2	neutral	AA	100	somatic	0	0.968027787600885	0.961171454043494
6	67231593	67234860	7	gain	-	-1	somatic	0	0.0832725702176933	0.270050716202211
6	73883205	73893006	1	loss	A	-1	somatic	0	0.00271210236695769	0.00498628537162593
6	75199806	75323952	2	neutral	AA	53.4891	somatic	0	0.425893319505796	0.595907522553423
6	75820536	75830337	2	neutral	AA	100	somatic	0	0.7087036648571	0.763771854009658
6	76728762	76741830	1	loss	A	-1	somatic	0	0.00271012712899199	0.00497411559009331
6	82452546	82779246	2	neutral	AA	100	somatic	0	0.557510417676878	0.316270358383361
6	84589164	84595698	2	neutral	AA	100	somatic	0	0.177021710894749	0.392885300169179
6	86098518	86111586	2	neutral	AA	12.1262	somatic	0	0.967553008712795	0.998803225560323
6	86725782	86755185	2	neutral	AA	48.4622	somatic	0	0.0807777558151941	0.115505349696163
6	87232167	87379182	2	neutral	AA	100	somatic	0	0.164550027629797	0.122880201130561
6	94697262	94710330	2	neutral	AA	54.6231	somatic	0	0.00731787509737911	0.022836057594169
6	95928921	95964858	2	neutral	AA	100	somatic	0	0.987584146723686	0.847448878352495
6	102590334	102593601	6	gain	AAAABB	32.0808	somatic	0	0.0832725702176933	0.270050716202211
6	105083055	105092856	2	neutral	AA	62.232	germline	1	0.279118535756995	0.298636308908172
6	107160867	107180469	2	neutral	AA	100	somatic	0	0.0164187892136234	0.0208482939592539
6	112956525	113211351	2	neutral	AA	100	somatic	0	0.53394951233803	0.09496307529458
6	114599826	114645564	2	neutral	AA	100	germline	1	0.101884636409404	0.244106377417664
6	125580213	125897112	2	neutral	AA	16.6349	somatic	0	0.145604897619966	0.278170508079809
6	126978489	126981756	2	neutral	AA	100	somatic	0	0.246716170824938	0.489341462134463
6	127288854	127295388	2	neutral	AA	100	somatic	0	0.0711786499637009	0.186854678440454
6	129624759	129628026	4	gain	AABB	70.8853	somatic	0	0.0832822356354662	0.270067502402318
6	140837103	140918778	2	neutral	AA	45.305	somatic	0	0.0658868139570003	0.0866121530300988
6	142003422	142006689	4	gain	-	-1	somatic	0	0.0832798191958299	0.270063305780889
6	149422779	150095781	2	neutral	AA	100	somatic	0	0.00124385922509227	0.0119063442892945
6	153872433	153996579	2	neutral	AA	19.3423	somatic	0	0.489240829546319	0.685330991462372
6	157312584	157315851	7	gain	AAAABBB	3.66701	germline	1	0.0832725702176933	0.270050716202211
6	157913712	157916979	2	neutral	AA	100	somatic	0	0.971816990905901	0.957058202143789
6	158759865	158769666	2	neutral	AA	27.2882	somatic	0	0.580617464063331	0.504695744400021
6	158841540	158861142	2	neutral	AA	27.2849	somatic	0	0.701570748665427	0.313230310569502
6	161151309	161170911	2	neutral	AA	80.5961	somatic	0	0.536211800789939	0.192395885569615
6	162010530	162013797	4	gain	AAAB	71.9919	somatic	0	0.0832830411279665	0.270068901286706
6	166623534	166630068	2	neutral	AA	54.5678	somatic	0	0.881825370397302	0.986602636542609
6	167802921	167897664	2	neutral	AA	100	somatic	0	0.774579226154267	0.819686036455365
6	168103485	168116553	2	neutral	AA	100	germline	1	0.667907196604186	0.899129530314268
6	170083287	170151894	2	neutral	AA	3.23861	somatic	0	0.00402777760145108	0.0225321929328003
7	9761796	9765063	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
7	20278269	20281536	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
7	21029679	21055815	2	neutral	AA	100	somatic	0	0.1394511059841	0.421041668235318
7	31274991	31278258	1	loss	A	-1	somatic	0	0.0832701540052356	0.270046519771196
7	38272905	38341512	1	loss	A	-1	somatic	0	4.75555216293715e-15	0
7	40184100	40197168	2	neutral	AA	100	somatic	0	0.0346632176735376	0.0375501313502445
7	42732360	42751962	2	neutral	AA	54.5678	somatic	0	0.880186903118824	0.908710597596506
7	49103010	49122612	2	neutral	AA	100	somatic	0	0.185536009197295	0.51666448416499
7	49978566	49981833	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
7	50625432	50824719	2	neutral	AA	23.6949	somatic	0	0.692685659623119	0.635936248179457
7	54395550	54398817	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
7	56205468	56208735	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
7	57486132	57495933	3	gain	AAB	1.37142	germline	1	0.00270492809063555	0.00496936430235129
7	58061124	58067658	4	gain	AABB	20.9427	somatic	0	0.0143128684643189	0.0366421516830245
7	61024293	61027560	4	gain	-	-1	somatic	0	0.0832814301492767	0.270066103523219
7	61027560	61047162	3	gain	-	-1	somatic	0	2.49749253803685e-05	1.54958818049389e-05
7	61047162	61056963	4	gain	-	-1	germline	1	0.00270126639473976	0.0049592524841795
7	61056963	61961922	2	neutral	AA	100	somatic	0	7.34352788041302e-10	5.7150005150497e-07
7	62295156	62357229	3	gain	AAB	0.392683	germline	1	5.83792692480297e-10	1.31183508500499e-10
7	62402967	62406234	5	gain	-	-1	germline	1	0.0832782082676257	0.270060508059715
7	62438904	62455239	3	gain	AAB	2.05327	germline	1	0.000108057058638934	9.16059683644388e-05
7	65225655	65228922	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
7	68852025	68940234	2	neutral	AA	100	somatic	0	0.834576756411027	0.5414473276918
7	69276735	69309405	2	neutral	AA	54.568	somatic	0	0.0772753806443894	0.331027801258993
7	72105957	72171297	2	neutral	AA	18.1927	somatic	0	0.265736241278334	0.494969076276983
7	74187036	74193570	2	neutral	AA	54.5678	somatic	0	0.322205848683082	0.592355769011871
7	79623324	79626591	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
7	84422547	84425814	11	gain	AAAAAAABBBB	7.97202	somatic	0	0.0832717648072304	0.270049317386581
7	99587961	99597762	1	loss	A	-1	somatic	0	0.00281753604930536	0.00532096943791827
7	100950300	100956834	4	gain	AABB	1.50451	germline	1	0.0143118515333858	0.036640237856555
7	100956834	100960101	12	gain	AAAAAAAABBBB	8.65668	germline	1	0.0832709594030779	0.27004791857624
7	100960101	100973169	3	gain	AAB	0.771079	germline	1	0.000533499298491752	0.000674311606504219
7	102070881	102074148	2	neutral	AA	100	germline	1	0.624710857816641	0.805490735566099
7	106099092	106102359	3	gain	AAB	65.5824	somatic	0	0.083287874215496	0.270077294704104
7	108771498	108827037	2	neutral	AA	100	somatic	0	0.176222860616035	0.591934871230388
7	109800603	109813671	1	loss	A	-1	somatic	0	0.000534244294754	0.000675086667518254
7	110545479	110548746	0	loss	-	-1	germline	1	0.0832653217506967	0.270038127051953
7	112796442	112799709	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
7	114041169	114044436	8	gain	-	-1	somatic	0	0.0832725702176933	0.270050716202211
7	117001071	117017406	2	neutral	AA	54.5679	somatic	0	0.831279724420615	0.625552582441313
7	121434390	121447458	2	neutral	AA	70.038	germline	1	0.0442815560279177	0.192621698989733
7	122476563	122483097	2	neutral	AA	100	somatic	0	0.971994296080721	0.896430753219741
7	132241626	132248160	2	neutral	AA	100	somatic	0	0.483889362392363	0.684618391486927
7	144388332	144398133	2	neutral	AA	100	somatic	0	0.603511558686696	0.95362312491214
7	145293291	145325961	2	neutral	AA	27.4207	somatic	0	0.130188160319482	0.234274871049356
7	149700474	149720076	2	neutral	AA	54.5681	somatic	0	0.718018533967406	0.98460294261852
7	152402283	152405550	12	gain	AAAAAAAAAABB	2.24896	germline	1	0.0832709594030779	0.27004791857624
7	152405550	152408817	7	gain	AAAAABB	6.34102	germline	1	0.0832725702176933	0.270050716202211
7	153052416	153075285	2	neutral	AA	36.3786	somatic	0	0.750928144452714	0.835575081451672
7	155326248	155336049	3	gain	AAB	2.30471	somatic	0	0.00272195165578242	0.00500012643842462
7	157201506	157266846	2	neutral	AA	21.8271	somatic	0	0.233765313081228	0.435532356141483
8	643599	650133	0	loss	-	-1	germline	1	0.0143068949077522	0.0366337315007311
8	3926934	3933468	1	loss	A	-1	somatic	0	0.0143409863946564	0.0366992238641928
8	6112557	6115824	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
8	15920091	15929892	1	loss	A	-1	germline	1	0.00270864075853835	0.00498004105298999
8	38073618	38076885	9	gain	-	-1	somatic	0	0.0832717648072304	0.270049317386581
8	42333786	42337053	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
8	43238745	43242012	3	gain	-	-1	germline	1	0.0833031804915687	0.27010387511537
8	48462678	48482280	2	neutral	AA	27.2839	somatic	0	0.157908844114526	0.217121455972989
8	50007969	50040639	2	neutral	AA	54.568	somatic	0	0.622274667057347	0.571306440598716
8	52294869	52353675	2	neutral	AA	92.7052	somatic	0	0.221134742366857	0.385786993729367
8	69946470	69953004	3	gain	AAA	100	somatic	0	0.0143356389686094	0.0366789141156841
8	74448396	74454930	0	loss	-	-1	germline	1	0.0143086740350065	0.0366390896026557
8	77342958	77346225	4	gain	-	-1	somatic	0	0.0832814301492767	0.270066103523219
8	80322462	80351865	2	neutral	AA	100	somatic	0	0.228188178432079	0.806327309446224
8	114622695	114629229	1	loss	A	-1	somatic	0	0.0143297842820022	0.03667393398133
8	120493494	120516363	2	neutral	AA	100	somatic	0	0.422215181747583	0.463457371216852
8	120918204	120921471	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
8	136145691	136152225	1	loss	A	-1	germline	1	0.0145195999520835	0.0372719053373942
8	136263303	136286172	2	neutral	AA	54.5743	somatic	0	0.12037600080078	0.297097680661369
8	141124599	141144201	2	neutral	AA	100	somatic	0	0.710805060176226	0.983452465298609
8	144113904	144123705	2	neutral	AA	100	somatic	0	0.429311967521846	0.426229844361311
8	144123705	144126972	6	gain	AAAAAB	19.3597	germline	1	0.0832725702176933	0.270050716202211
9	3502224	3505491	12	gain	AAAAAAAABBBB	8.01884	somatic	0	0.0832709594030779	0.27004791857624
9	23362317	23378652	1	loss	A	-1	germline	1	0.000113797188959662	0.000101260676188097
9	35120250	35633169	2	neutral	AA	100	somatic	0	0.0555855097063686	0.0948709683485983
9	40912641	40928976	7	gain	AAAAABB	1.16645	germline	1	0.00270050218218862	0.00495832003708652
9	69910533	71697582	2	neutral	AA	19.3838	somatic	0	0.0540570025052123	0.0314187053178837
9	73402956	73412757	1	loss	A	-1	somatic	0	0.00270615739652963	0.00496952001629247
9	81714204	81733806	2	neutral	AA	100	somatic	0	0.64359255444779	0.744165906502195
9	86056047	86105052	2	neutral	AA	48.2112	somatic	0	0.91484643434687	0.971426505029629
9	86970807	86993676	2	neutral	AA	100	somatic	0	0.615627190785822	0.482073786472375
9	91139499	91162368	2	neutral	AA	100	germline	1	0.6626470951285	0.85421728354068
9	98545788	98549055	0	loss	-	-1	somatic	0	0.083266932476969	0.270040924603878
9	103011777	103015044	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
9	107742393	107824068	2	neutral	AA	100	somatic	0	0.385037652562401	0.546252754259477
9	110689227	110692494	8	gain	AAAABBBB	100	somatic	0	0.0832725702176933	0.270050716202211
9	111790206	111960090	2	neutral	AA	100	somatic	0	0.31078884771049	0.717384498280328
9	120143925	120150459	2	neutral	AA	100	somatic	0	0.58546662357396	0.919064940738344
9	122933943	122950278	2	neutral	AA	54.5697	somatic	0	0.546559189864427	0.788186700481696
9	129425472	129441807	3	gain	AAB	0.609024	somatic	0	0.000112113599349403	9.68339719654709e-05
9	136772955	136782756	1	loss	A	-1	somatic	0	0.0027106614753899	0.00497684361845163
9	137612574	137625642	2	neutral	AA	36.3786	somatic	0	0.955856154827442	0.941364372549935
9	137713851	137717118	4	gain	AAAA	12.5566	somatic	0	0.0832838466267776	0.270070300176383
10	2143152	3064446	2	neutral	AA	4.40998	somatic	0	0.0855583650969402	0.112893323675387
10	16952463	16965531	2	neutral	AA	100	somatic	0	0.0900957786407279	0.0779428166518324
10	17847621	17880291	2	neutral	AA	100	germline	1	0.646673011461255	0.537929912696841
10	26570511	26622783	2	neutral	AA	1.5683	germline	1	0.950948928044109	0.308973599969775
10	26622783	26629317	3	gain	AAB	0.837486	somatic	0	0.0143680688036377	0.0368051469400129
10	26923347	26952750	2	neutral	AA	2.06816	somatic	0	0.813104768212127	0.895705861318036
10	38485260	38491794	3	gain	AAB	3.72032	germline	1	0.0143218965198311	0.0366689544385798
10	38491794	38524464	3	gain	AAA	3.25027	germline	1	5.66197530337991e-08	7.5189776627127e-09
10	38524464	38527731	8	gain	AAAAAABB	23.9545	germline	1	0.0832717648072304	0.270049317386581
10	38573469	38583270	3	gain	AAA	3.60343	germline	1	0.0027021466418627	0.00496088465338063
10	38583270	38818494	3	gain	AAA	2.304	somatic	0	1.33648601435412e-10	8.55049364645311e-12
10	38818494	38834829	2	neutral	AA	1.97484	germline	1	0.000199208060281743	0.000190425790536519
10	39556836	39563370	1	loss	A	-1	somatic	0	0.0152178896585192	0.0391951414119041
10	41820867	41843736	2	neutral	AA	4.53245	germline	1	3.95523248235332e-05	3.84121804147819e-05
10	41856804	41882940	16	gain	AAAAAAAAAAABBBBB	5.6301	germline	1	0.000532155374715311	0.000671065450596586
10	42301116	42320718	3	gain	AAA	17.6403	germline	1	2.5032927965767e-05	1.88032201342558e-05
10	45153207	45159741	2	neutral	AA	15.5908	somatic	0	0.670954775461195	0.806850385915738
10	46515546	46561284	4	gain	AABB	0.819395	germline	1	1.97788566448198e-09	7.56542606339394e-11
10	52255665	52258932	0	loss	-	-1	somatic	0	0.0832661271106778	0.270039525825271
10	53023410	53029944	1	loss	A	-1	somatic	0	0.0144192338298751	0.036905944445492
10	56120526	56492964	2	neutral	AA	54.5728	somatic	0	0.0798941604389228	0.0250779581292823
10	58724325	58747194	2	neutral	AA	72.6995	somatic	0	0.579983931796822	0.731274271305356
10	62801541	62834211	2	neutral	AA	100	somatic	0	0.416774537936946	0.351162384420125
10	65549088	65555622	1	loss	A	-1	somatic	0	0.0143166825230276	0.0366551680226764
10	67724910	67728177	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
10	70119621	70920036	2	neutral	AA	10.5256	somatic	0	0.206861767224536	0.13420271915927
10	76493538	76503339	1	loss	A	-1	somatic	0	0.0159881330168296	0.0417259163238565
10	76614417	76617684	4	gain	-	-1	somatic	0	0.0832838466267776	0.270070300176383
10	85762017	85781619	2	neutral	AA	100	somatic	0	0.991048163090241	0.999479107138527
10	95510745	95530347	2	neutral	AA	100	somatic	0	0.700167840720844	0.732664712933262
10	97640829	97650630	2	neutral	AA	54.5679	somatic	0	0.0574740717627296	0.0512884897330983
10	104181363	104214033	2	neutral	AA	27.284	germline	1	0.214545220409346	0.244546993026388
10	109437966	109447767	2	neutral	AA	100	somatic	0	0.427290551007633	0.534910318957172
10	116164719	116174520	2	neutral	AA	100	somatic	0	0.612729401255939	0.854931731962904
10	120467358	120473892	1	loss	A	-1	somatic	0	0.0151885965237104	0.039295123473423
10	123231240	123263910	2	neutral	AA	14.3624	somatic	0	0.437126692272202	0.752556070242676
10	128461707	128464974	6	gain	AAABBB	31.6174	germline	1	0.0832725702176933	0.270050716202211
10	129383001	129438540	2	neutral	AA	100	somatic	0	0.468646416764288	0.214839901035177
10	131620896	131627430	1	loss	A	-1	somatic	0	0.0148457239245091	0.0382201772762915
10	132362505	132365772	5	gain	AAABB	9.35045	germline	1	0.0832725702176933	0.270050716202211
10	132424578	132440913	2	neutral	AA	100	somatic	0	0.503675509896078	0.833999863048275
10	133110648	133113915	3	gain	AAB	4.13331	somatic	0	0.0832919019619895	0.270084289364054
11	28984824	28988091	0	loss	-	-1	germline	1	0.0832653217506967	0.270038127051953
11	37743651	37746918	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
11	50174586	50177853	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
11	54754920	54777789	1	loss	A	-1	germline	1	2.32420156866116e-05	1.43850220052366e-05
11	55597806	55686015	1	loss	A	-1	germline	1	9.26783997278085e-18	0
11	60073596	60076863	2	neutral	AA	100	germline	1	0.873803599825911	0.926933391764601
11	61269318	61393464	2	neutral	AA	32.2229	somatic	0	0.969662488660069	0.833370257719739
11	61890048	61893315	2	neutral	AA	100	somatic	0	0.328652528536326	0.573707308976831
11	63425538	63471276	2	neutral	AA	36.3793	somatic	0	0.546279495884728	0.673360680209909
11	63797976	63801243	2	neutral	AA	100	somatic	0	0.294877524459641	0.540292390997481
11	65192985	65235456	2	neutral	AA	15.3045	somatic	0	0.0233074607445447	0.191426606751697
11	65415141	65509884	2	neutral	AA	100	somatic	0	0.312514778267943	0.395903076460443
11	65555622	65558889	2	neutral	AA	100	somatic	0	0.214418645686351	0.452662960509795
11	67604031	67780449	2	neutral	AA	10.1635	somatic	0	0.705644273734989	0.517423333512838
11	69698178	69711246	2	neutral	AA	41.2052	somatic	0	0.038053060502554	0.104287853907223
11	70106553	70109820	2	neutral	AA	100	somatic	0	0.242857861158468	0.485066181048136
11	70929837	70933104	2	neutral	AA	100	somatic	0	0.668219352847862	0.831439158605754
11	71217333	71240202	2	neutral	AA	100	somatic	0	0.35494918296236	0.527040560630128
11	74791431	74886174	2	neutral	AA	100	somatic	0	0.0991841986802057	0.212711185040877
11	76823505	77084865	2	neutral	AA	42.6856	somatic	0	0.0156111265533283	0.00326050338376194
11	78038829	78042096	2	neutral	AA	100	somatic	0	0.401034660739386	0.639978297556147
11	78780438	78819642	2	neutral	AA	100	somatic	0	0.173165680829416	0.180742896900243
11	79018929	79028730	2	neutral	AA	100	somatic	0	0.302792703828011	0.756323722941369
11	82426410	82429677	2	neutral	AA	100	somatic	0	0.0982208021136178	0.295114911760506
11	83239893	83256228	2	neutral	AA	100	somatic	0	0.0609106948030362	0.0402223551234082
11	84527091	84556494	2	neutral	AA	54.5679	somatic	0	0.788503677587022	0.716360760791539
11	91237509	91325718	2	neutral	AA	54.5687	somatic	0	0.594782102851681	0.439323575805157
11	95821110	95883183	2	neutral	AA	100	somatic	0	0.492237547358021	0.664168348141313
11	96958026	96977628	2	neutral	AA	100	somatic	0	0.316985300830952	0.693158930459951
11	98549055	98555589	2	neutral	AA	27.2839	germline	1	0.456591407866607	0.549776216126693
11	99685971	99702306	3	gain	AAB	5.27238	germline	1	0.00010786346384852	9.1081287456829e-05
11	104400252	104403519	1	loss	A	-1	somatic	0	0.0832765973646639	0.270057710359705
11	105537168	105543702	2	neutral	AA	100	somatic	0	0.096344984530679	0.167037577552914
11	108866241	108885843	2	neutral	AA	100	somatic	0	0.0137301530556256	0.0465345415028274
11	114599826	114603093	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
11	114756642	114759909	2	neutral	AA	100	somatic	0	0.481887566621884	0.706224472296207
11	117974637	117977904	2	neutral	AA	100	somatic	0	0.625308211227845	0.805863073922874
11	119568933	119591802	2	neutral	AA	54.5679	somatic	0	0.889487740641887	0.5949989367431
11	121937508	121944042	2	neutral	AA	100	somatic	0	0.766593959166914	0.619888007676127
11	122081256	122091057	2	neutral	AA	100	somatic	0	0.438814574156467	0.473433629536234
11	122891472	122904540	2	neutral	AA	100	germline	1	0.427090862259672	0.83680823086668
11	124760196	124766730	2	neutral	AA	54.5678	somatic	0	0.599820037111922	0.921682833312354
11	129670497	129673764	8	gain	AAAAABBB	100	somatic	0	0.0832717648072304	0.270049317386581
11	131320332	131343201	2	neutral	AA	18.1893	germline	1	0.0831743607880109	0.20871858083035
11	132267762	132271029	2	neutral	AA	100	germline	1	0.218826420145243	0.457827531125632
12	2254230	2257497	4	gain	-	-1	germline	1	0.0832814301492767	0.270066103523219
12	17259561	17266095	1	loss	A	-1	somatic	0	0.014861813861181	0.0382845624899102
12	18095913	18102447	1	loss	A	-1	somatic	0	0.0145216598935918	0.0372210393401926
12	33235191	33241725	1	loss	A	-1	somatic	0	0.0143897033387186	0.0368055312050196
12	33561891	33565158	1	loss	A	-1	somatic	0	0.0832822356354662	0.270067502402326
12	37616238	37622772	1	loss	A	-1	somatic	0	0.0144335708730743	0.0368324384781923
12	39710385	39713652	1	loss	A	-1	somatic	0	0.0832814301492767	0.270066103523227
12	41624847	42366456	2	neutral	AA	1.46736	somatic	0	0.928979962894152	0.950154035744898
12	45509310	45515844	1	loss	A	-1	somatic	0	0.0143204974782531	0.0366547851314228
12	50360805	50380407	2	neutral	AA	39.6495	somatic	0	0.0263981271853905	0.0488586491765469
12	50439213	50465349	2	neutral	AA	27.2952	somatic	0	0.342785655773558	0.388480605738609
12	50978268	51010938	2	neutral	AA	100	somatic	0	0.522330190665206	0.286383130057429
12	56698785	56917674	2	neutral	AA	15.3683	somatic	0	0.252785410137469	0.425002764969721
12	59371191	59593347	2	neutral	AA	8.68759	somatic	0	0.579822717824168	0.725809797638238
12	79701732	79757271	2	neutral	AA	15.5908	somatic	0	0.196232468014454	0.338970559698332
12	79760538	79776873	3	gain	AAA	100	somatic	0	0.000581264022941064	0.00335330432255576
12	79776873	79780140	2	neutral	AA	100	somatic	0	0.135071717644958	0.350877630648796
12	82638765	82642032	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
12	88702317	88705584	4	gain	-	-1	somatic	0	0.0832862631610759	0.270074496877149
12	89532135	89705286	2	neutral	AA	100	somatic	0	0.00908115622064409	0.103462454454001
12	90090792	90094059	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
12	97817247	97951194	2	neutral	AA	100	somatic	0	0.0401548029794417	0.0176493015259759
12	101708244	101714778	1	loss	A	-1	somatic	0	0.0145148373241562	0.0371973743678464
12	113021865	113038200	2	neutral	AA	54.6578	somatic	0	0.743191950269187	0.822513620715652
12	128082735	128086002	7	gain	AAAABBB	31.9956	somatic	0	0.0832725702176933	0.270050716202211
12	131454279	131493483	2	neutral	AA	11.2706	germline	1	0.204405074932661	0.638692479423999
12	131650299	131653566	1	loss	A	-1	germline	1	0.0832701540052356	0.270046519771196
12	131669901	131696037	2	neutral	AA	30.1047	germline	1	0.929477618221503	0.733375666062399
13	18233127	18236394	1	loss	A	-1	somatic	0	0.0833547552391128	0.270193423180547
13	22019580	22022847	0	loss	-	-1	germline	1	0.0832653217506967	0.270038127051953
13	33561891	33571692	1	loss	A	-1	germline	1	0.0027802621867239	0.00520282904695846
13	50494752	50501286	1	loss	A	-1	somatic	0	0.0143240589121425	0.0366727848035729
13	58894209	58897476	7	gain	-	-1	somatic	0	0.0832725702176933	0.270050716202211
13	63062901	63066168	4	gain	-	-1	germline	1	0.0832822356354662	0.270067502402318
13	71903403	71906670	0	loss	-	-1	germline	1	0.0832653217506967	0.270038127051953
13	82589760	82599561	1	loss	A	-1	somatic	0	0.00271135859362219	0.00497598609036976
13	84706776	84710043	15	gain	-	-1	somatic	0	0.0832709594030779	0.27004791857624
13	86497092	86500359	4	gain	AAAB	82.4055	somatic	0	0.0832822356354662	0.270067502402318
13	87794091	87797358	1	loss	A	-1	somatic	0	0.0876130849876065	0.277508873379265
13	87977043	87980310	1	loss	A	-1	somatic	0	0.0856728427746818	0.274194603861913
13	88689249	88702317	2	neutral	AA	100	germline	1	0.147815635096173	0.576731343320839
13	88868934	88882002	2	neutral	AA	54.5681	somatic	0	0.11102618831512	0.142315995055357
13	89110692	89211969	2	neutral	AA	73.7223	somatic	0	0.000764475477606601	0.00666039839921306
13	91933380	91936647	2	neutral	AA	100	germline	1	0.989199408002596	0.961396945634146
13	92034657	92037924	2	neutral	AA	100	somatic	0	0.153405855704744	0.37625444792085
13	92184939	92217609	2	neutral	AA	100	germline	1	0.827532326773372	0.855737742472293
13	94703796	94716864	2	neutral	AA	48.2852	somatic	0	0.125565252928131	0.247942729426244
13	96177213	96187014	2	neutral	AA	100	somatic	0	0.839376472931488	0.726474964161468
13	98683002	98686269	2	neutral	AA	100	somatic	0	0.184241423687687	0.416206298189928
13	99953865	99983268	2	neutral	AA	54.5791	somatic	0	0.0277296903537185	0.0771984522998523
13	101241063	101244330	1	loss	A	-1	somatic	0	0.0832701540052356	0.270046519771196
13	101244330	101257398	2	neutral	AA	100	somatic	0	0.629339007598327	0.469245965905742
13	103547565	103557366	2	neutral	AA	36.3848	somatic	0	0.77497450545314	0.948391712818835
13	106092558	106095825	2	neutral	AA	100	somatic	0	0.841241177417613	0.914753839735669
13	106700220	106723089	2	neutral	AA	100	somatic	0	0.923741423766109	0.66807487769085
13	109215810	109219077	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
13	109990089	110045628	2	neutral	AA	22.9081	somatic	0	0.145096209268719	0.163751714495257
13	110143638	110146905	2	neutral	AA	54.5683	somatic	0	0.345954304300468	0.590210088848727
13	110578149	110581416	2	neutral	AA	18.4071	somatic	0	0.232766708747595	0.473792816479437
13	110813373	110839509	2	neutral	AA	100	somatic	0	0.61121861847736	0.798616547830585
13	111309957	111326292	2	neutral	AA	18.8874	germline	1	0.0978081357433278	0.282068614847387
13	113057802	113067603	2	neutral	AA	27.3047	somatic	0	0.506458747105244	0.841662006286986
13	113446575	113449842	2	neutral	AA	100	somatic	0	0.295761535835531	0.541210315328746
13	114204519	114331932	2	neutral	AA	28.7037	somatic	0	1.10875503697864e-07	1.92147825095468e-07
14	0	16093242	3	gain	AAB	-1	somatic	0	NA	NA
14	16093242	16096509	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
14	16096509	18487953	3	gain	AAB	-1	somatic	0	NA	NA
14	18491220	18657837	3	gain	AAB	-1	somatic	0	NA	NA
14	18657837	18661104	4	gain	AAAB	28.4507	somatic	0	0.0832822356354662	0.270067502402318
14	18661104	18680706	3	gain	AAB	-1	somatic	0	NA	NA
14	18693774	19749015	3	gain	AAB	-1	somatic	0	NA	NA
14	19749015	19954836	3	gain	AAB	0.645324	germline	1	1.68837173968939e-22	0
14	20235798	20239065	4	gain	AABB	17.8231	somatic	0	0.0832822356354662	0.270067502402318
14	34349238	34352505	40	gain	AAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBBBB	100	somatic	0	0.0832677378495704	0.270042323387766
14	37299339	37302606	1	loss	A	-1	somatic	0	0.0832814301492767	0.270066103523227
14	41141331	41200137	1	loss	A	-1	germline	1	4.3229908961145e-12	2.69784194983913e-14
14	41732658	42235776	2	neutral	AA	64.1317	somatic	0	0.00019160791544547	5.23793984963383e-07
14	47237553	47247354	1	loss	A	-1	somatic	0	0.0146357431907605	0.0376093044762509
14	48132711	48149046	1	loss	A	55.7917	somatic	0	0.000158359201527494	0.000163555263896553
14	60432966	60436233	9	gain	-	-1	somatic	0	0.0832717648072304	0.270049317386581
14	64134477	64408905	2	neutral	AA	25.0941	somatic	0	0.0148296880541955	0.0453287025768571
14	68293368	68335839	2	neutral	AA	36.7204	germline	1	0.129870240302752	0.195781122496091
14	68940234	69034977	2	neutral	AA	68.1691	somatic	0	0.415915817701014	0.1915533473731
14	73059921	73066455	1	loss	A	-1	somatic	0	0.0144656185602366	0.0368859196489664
14	82031103	82037637	1	loss	A	-1	somatic	0	0.0148943031604012	0.0383657749277234
14	99927729	99930996	3	gain	AAB	24.985	somatic	0	0.0832991523032836	0.270096880085179
14	101711511	101727846	1	loss	A	-1	somatic	0	0.000426529115486055	0.00312133588719721
15	17079876	17083143	16	gain	-	-1	somatic	0	0.0832709594030779	0.27004791857624
15	20271735	20275002	5	gain	AAAAB	24.0496	somatic	0	0.0832749864869443	0.270054912680835
15	20340342	20343609	13	gain	AAAAAAAAABBBB	10.73	germline	1	0.0832709594030779	0.27004791857624
15	20657241	20670309	4	gain	AAAB	3.64964	germline	1	0.000532397047946336	0.000671275794372317
15	22222134	22231935	3	gain	AAB	8.71238	germline	1	0.00299206112351042	0.00594770963431557
15	22231935	22251537	3	gain	AAB	2.73705	germline	1	0.00270444114832759	0.00496337271521607
15	23411322	23470128	2	neutral	AA	5.81368	somatic	0	0.0325172338346829	0.0409947724019692
15	25482600	25534872	2	neutral	AA	3.61306	somatic	0	0.41098827754542	0.677611118204285
15	26714259	26750196	2	neutral	AA	17.3248	germline	1	0.648156168623268	0.427238812393135
15	33931062	34068276	2	neutral	AA	41.2103	somatic	0	0.857692425821279	0.998644840855077
15	34437447	34519122	1	loss	A	-1	somatic	0	1.00434978445146e-16	0
15	42849972	42866307	2	neutral	AA	36.3786	somatic	0	0.610000693876695	0.948575391703534
15	46577619	46590687	2	neutral	AA	100	somatic	0	0.81776146340106	0.988699485498812
15	68443650	68473053	2	neutral	AA	100	somatic	0	0.171172754184753	0.150257241378445
15	71789058	71883801	2	neutral	AA	36.3786	somatic	0	0.264779863102719	0.300207090333883
15	72092889	72096156	0	loss	-	-1	somatic	0	0.0832701540052356	0.270046519771196
15	76042692	76055760	1	loss	A	-1	somatic	0	0.000571665183318892	0.000774290418448786
16	846153	849420	3	gain	AAB	7.34289	somatic	0	0.0832991523032836	0.270096880085179
16	1022571	1025838	5	gain	AAABB	15.9987	germline	1	0.0832765973646639	0.270057710359697
16	10826838	10862775	2	neutral	AA	43.1854	somatic	0	0.033833156766056	0.0454668651198116
16	20565765	20569032	48	gain	-	-1	somatic	0	0.083266932476969	0.27004092460387
16	21558933	21581802	4	gain	AABB	4.10381	germline	1	4.59935559004693e-06	1.66527835399055e-06
16	22614174	22627242	4	gain	AABB	27.5655	germline	1	0.000532423906839617	0.000671303844878679
16	22627242	22695849	4	gain	AAAB	2.66455	germline	1	9.52542965311034e-15	0
16	22695849	22699116	4	gain	AABB	32.9159	germline	1	0.0832822356354662	0.270067502402318
16	34061742	34065009	25	gain	AAAAAAAAAAAAAAAABBBBBBBBB	100	germline	1	0.0832709594030779	0.27004791857624
16	34068276	34084611	3	gain	AAA	54.6693	somatic	0	0.000655769706547981	0.000983215233494539
16	34084611	34087878	14	gain	AAAAAAAAABBBBB	100	germline	1	0.0832709594030779	0.27004791857624
16	34087878	34094412	2	neutral	AA	18.4357	somatic	0	0.0176744831390605	0.0450852263508862
16	34094412	34100946	7	gain	AAAAABB	1.51239	germline	1	0.014308419862022	0.0366348796077093
16	34100946	34953633	3	gain	AAB	0.561709	somatic	0	2.58192212937082e-35	0
16	34956900	34960167	2	neutral	AA	4.44668	germline	1	0.211145173665861	0.448824937017785
16	35986005	36090549	2	neutral	AA	2.27639	germline	1	2.00517075605474e-11	3.56895846209682e-10
16	36123219	36126486	5	gain	-	-1	germline	1	0.0832725702176933	0.270050716202211
16	46401201	46404468	73	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	28.454	germline	1	0.0832661271106778	0.270039525825263
16	46404468	46420803	3	gain	AAA	11.547	germline	1	0.000112550922324918	9.90328510112048e-05
16	46463274	46466541	2	neutral	AA	3.51594	somatic	0	0.112438722782694	0.317516885249189
16	57829167	57871638	3	gain	AAB	3.7508	germline	1	4.29365348772686e-10	1.04429798142291e-11
16	57982716	58054590	2	neutral	AA	36.3786	somatic	0	0.114903418265676	0.441770556048261
16	62510778	62517312	1	loss	A	-1	somatic	0	0.0143468451180737	0.0367007570746217
16	65320398	65323665	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
16	70149024	70162092	4	gain	AABB	3.0881	germline	1	0.000532397047946336	0.000671247744964631
16	74108628	74111895	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
16	76503339	76506606	1	loss	A	-1	germline	1	0.0832830411279665	0.270068901286714
16	76924782	77326623	2	neutral	AA	100	somatic	0	0.46630625504723	0.452011241569815
16	89443926	89538669	2	neutral	AA	18.5325	somatic	0	0.85533984929048	0.871010346071306
17	839619	842886	3	gain	AAB	7.7367	somatic	0	0.0833233237999352	0.270138852249782
17	3982473	4204629	2	neutral	AA	16.3194	somatic	0	0.526523268136379	0.488109184762902
17	5204331	5462424	2	neutral	AA	98.4148	somatic	0	0.160633325958798	0.227666946063153
17	7030584	7033851	2	neutral	AA	100	somatic	0	0.93223528067796	0.946060427605966
17	19579131	19778418	2	neutral	AA	26.5616	somatic	0	0.750605694066147	0.674800218222795
17	19938501	19997307	2	neutral	AA	27.9509	somatic	0	0.203067236486509	0.26379576764815
17	21291039	21304107	4	gain	AABB	0.251416	germline	1	0.000532410477235154	0.000671317870544086
17	21852963	21859497	5	gain	-	-1	somatic	0	0.0143101991565562	0.0366390896026536
17	21859497	21924837	3	gain	-	-1	somatic	0	1.50338229813613e-14	2.22044604925031e-16
17	21967308	21970575	14	gain	-	-1	germline	1	0.0832709594030779	0.27004791857624
17	21977109	21990177	8	gain	-	-1	germline	1	0.00270043271811757	0.00495832003708652
17	22124124	22130658	5	gain	-	-1	germline	1	0.0143090553019513	0.0366367931893031
17	22130658	22150260	6	gain	AAAABB	1.36179	germline	1	2.21026833884138e-05	1.22938175954879e-05
17	22150260	22160061	5	gain	AAABB	1.23367	germline	1	0.00270059480348989	0.00495863083492609
17	26782866	26792667	4	gain	-	-1	germline	1	0.00270203080489999	0.00496088465338063
17	26792667	26805735	3	gain	-	-1	germline	1	0.000561123795570555	0.000745357923995327
17	26809002	26818803	4	gain	-	-1	germline	1	0.0143121057601437	0.0366413861419416
17	26818803	26822070	3	gain	-	-1	germline	1	0.0835209370860551	0.270481803120857
17	26822070	26828604	4	gain	-	-1	germline	1	0.0143113430918207	0.0366394723504557
17	26828604	26877609	3	gain	-	-1	somatic	0	1.2859891306342e-10	6.46571685081199e-12
17	26936415	26939682	15	gain	AAAAAAAAAABBBBB	3.60751	germline	1	0.0832709594030779	0.27004791857624
17	27387261	27465669	2	neutral	AA	7.26791	somatic	0	0.537681520044714	0.847300113747759
17	28452303	28455570	1	loss	A	-1	somatic	0	0.0832709594030779	0.270047918576248
17	32673267	32709204	2	neutral	AA	36.3851	somatic	0	0.930651281190005	0.98703934571477
17	41138064	41190336	2	neutral	AA	11.8262	germline	1	0.0100642065889614	0.0251168496809436
17	41866605	41869872	2	neutral	AA	100	somatic	0	0.652546511923771	0.82230408929176
17	43307352	43349823	2	neutral	AA	100	somatic	0	0.57373928037319	0.661751887081849
17	43359624	43366158	3	gain	AAB	18.9098	germline	1	0.01433449332045	0.0367007570746195
17	43875810	43937883	2	neutral	AA	24.5127	somatic	0	0.706199790680739	0.28648827615981
17	53774820	53778087	0	loss	-	-1	germline	1	0.083266932476969	0.270040924603878
17	56107458	56143395	2	neutral	AA	93.3662	germline	1	0.0371728897142612	0.0165989197557534
17	62569584	62595720	2	neutral	AA	100	somatic	0	0.293349204658428	0.549399146871167
17	66976767	66989835	2	neutral	AA	36.4322	somatic	0	0.820154105305334	0.798786211441797
17	68871627	68904297	2	neutral	AA	54.5697	germline	1	0.0949065491253483	0.533061766613914
17	79825878	79832412	2	neutral	AA	54.6403	germline	1	0.647992404560588	0.680361936597879
17	80743905	80747172	4	gain	AAAA	13.5704	germline	1	0.0832822356354662	0.270067502402318
17	82583226	82586493	4	gain	AABB	15.5128	germline	1	0.0832822356354662	0.270067502402318
17	83105946	83203956	2	neutral	AA	7.77196	germline	1	3.10590640367477e-05	0.000113750875711416
18	2682207	2783484	2	neutral	AA	68.0597	somatic	0	0.598859165204207	0.337934682694522
18	4318974	4325508	2	neutral	AA	100	somatic	0	0.707511119134317	0.93867217178877
18	5305608	5308875	1	loss	A	-1	somatic	0	0.0833217121900865	0.270136053957384
18	23996115	24032052	2	neutral	AA	27.2885	somatic	0	0.563544047405838	0.528989463850833
18	24460029	24466563	2	neutral	AA	100	somatic	0	0.427100639862969	0.806846192756173
18	29592486	29599020	4	gain	AAAB	100	somatic	0	0.0143114702007182	0.0366394723504557
18	33450813	33470415	2	neutral	AA	100	somatic	0	0.809226772981411	0.807342148091532
18	34983036	34986303	4	gain	AABB	7.8519	somatic	0	0.0832822356354662	0.270067502402318
18	38890368	38952441	2	neutral	AA	39.0697	somatic	0	0.782495209965853	0.897265819180546
18	39501297	39527433	2	neutral	AA	36.5684	somatic	0	0.0748699678038099	0.351458570131177
18	40680684	40687218	1	loss	A	-1	somatic	0	0.014323295681973	0.0366655074093666
18	41272011	41569308	2	neutral	AA	100	somatic	0	0.607217167306519	0.559815673905316
18	44542278	44545545	4	gain	AAAB	27.4098	somatic	0	0.0832814301492767	0.270066103523219
18	52791453	52801254	2	neutral	AA	32.2997	somatic	0	0.0962042142362448	0.170776633144168
18	63298125	63350397	2	neutral	AA	72.8312	somatic	0	0.276704556606413	0.540910846654929
18	64333764	64382769	2	neutral	AA	36.3861	somatic	0	0.078712251928274	0.181828473156096
18	66055473	66065274	1	loss	A	-1	somatic	0	0.00271614989824783	0.00498441132292005
18	68607000	68613534	2	neutral	AA	100	somatic	0	0.985963731375922	0.930867235994233
18	72553536	72589473	2	neutral	AA	100	somatic	0	0.129265854814235	0.145734569159107
18	76480470	76490271	2	neutral	AA	100	somatic	0	0.954049551341325	0.997371976213932
18	77957154	77996358	2	neutral	AA	49.1252	somatic	0	0.59392074631809	0.521044648180219
18	79146342	79198614	2	neutral	AA	100	germline	1	0.606602370550924	0.653401308080675
18	79198614	79201881	3	gain	AAB	19.2834	somatic	0	0.0833023748412885	0.270102476098753
19	7448760	7452027	9	gain	AAAAAABBB	10.3504	germline	1	0.0832717648072304	0.270049317386581
19	10552410	10575279	2	neutral	AA	36.3786	somatic	0	0.498798562808964	0.610170897606471
19	14933457	14939991	1	loss	A	-1	somatic	0	0.014310707562271	0.0366421516830268
19	15815547	15844950	2	neutral	AA	100	somatic	0	0.321731380644528	0.500588751453426
19	15844950	15910290	2	neutral	AA	65.531	germline	1	0.0819387268104373	0.0594615478761423
19	18305001	18324603	2	neutral	AA	100	somatic	0	0.140713825298164	0.361369554504136
19	24329349	24348951	3	gain	AAB	1.03798	germline	1	2.21354556211947e-05	1.23088526112758e-05
19	24348951	24352218	3	gain	AAB	4.89195	germline	1	0.0832943186856192	0.270088486223493
19	24352218	24907608	5	gain	AAABB	0.701867	germline	1	1.97540408645473e-11	1.87627691161651e-13
19	27243513	27338256	3	gain	AAB	5.91299	somatic	0	1.85777122253079e-12	2.47912801398797e-13
19	27338256	27341523	5	gain	AAABB	2.68629	germline	1	0.0832765973646639	0.270057710359697
19	27344790	27348057	5	gain	AAABB	2.17965	germline	1	0.0832725702176933	0.270050716202211
19	27348057	27380727	6	gain	AAAABB	0.838038	germline	1	2.0362706457898e-07	3.04792966421275e-08
19	27380727	27383994	4	gain	AABB	10.2835	germline	1	0.0832814301492767	0.270066103523219
19	27383994	27400329	7	gain	AAAAABB	0.77813	germline	1	0.000107558501039486	9.08271348508682e-05
19	28612386	28645056	2	neutral	AA	3.30743	germline	1	0.378266502935177	0.360328385186838
19	28906416	28952154	2	neutral	AA	100	somatic	0	0.678285055915897	0.602638655379784
19	34391709	34394976	4	gain	AAAA	4.73221	somatic	0	0.0832822356354662	0.270067502402318
19	36348642	36355176	1	loss	A	-1	somatic	0	0.0143202431200096	0.036665890398612
19	42291315	42330519	2	neutral	AA	36.3786	somatic	0	0.91004997867139	0.874870496478604
19	50573160	50579694	0	loss	-	-1	germline	1	0.0143088011229924	0.0366394723504578
19	53016876	53049546	3	gain	AAB	3.53183	germline	1	2.04540252169202e-07	3.06430651964007e-08
19	56091123	56162997	2	neutral	AA	64.5564	somatic	0	0.991019464012105	0.977341202434774
20	65340	68607	4	gain	-	-1	germline	1	0.0832854576433322	0.270073097971604
20	483516	552123	2	neutral	AA	52.6346	somatic	0	0.0305054167241476	0.116736978403146
20	4482324	4550931	2	neutral	AA	20.8993	somatic	0	0.392491786732845	0.541245440235194
20	9072459	9078993	2	neutral	AA	100	somatic	0	0.0994777096984122	0.270320869152606
20	11267883	11522709	2	neutral	AA	100	somatic	0	0.0577328210731053	0.0683696441229809
20	14724369	14910588	2	neutral	AA	56.9581	somatic	0	0.0659024928423528	0.0532255664065774
20	21545865	21578535	2	neutral	AA	36.3844	somatic	0	0.950666917751971	0.654850653560272
20	22921272	22947408	2	neutral	AA	100	somatic	0	0.328778731584014	0.63083512311595
20	24656049	24685452	2	neutral	AA	33.8438	somatic	0	0.824289026837199	0.799869122328084
20	26207874	26309151	2	neutral	AA	1.88265	somatic	0	0.127686981587226	0.0244651637823858
20	26309151	26315685	2	neutral	AA	-1	somatic	0	NA	NA
20	26315685	26322219	0	loss	-	-1	germline	1	0.014308419862022	0.0366383241175462
20	26322219	26381025	2	neutral	AA	3.3346	somatic	0	2.00627675980109e-08	2.72830432690441e-08
20	28785537	28788804	10	gain	-	-1	germline	1	0.0832717648072304	0.270049317386581
20	28795338	28801872	3	gain	-	-1	germline	1	0.0146490372016067	0.0376112624956544
20	28801872	28873746	11	gain	-	-1	germline	1	9.63996195446886e-07	2.25202057779761e-07
20	28873746	29262519	3	gain	-	-1	somatic	0	0.00100693882184102	0.00223254142569496
20	29262519	29265786	7	gain	-	-1	germline	1	0.0832725702176933	0.270050716202211
20	29265786	29687229	3	gain	-	-1	somatic	0	4.2594712388462e-10	1.03280717311804e-11
20	29693763	29700297	3	gain	-	-1	somatic	0	0.014327239424011	0.0366769986093768
20	29700297	29703564	4	gain	-	-1	somatic	0	0.0832814301492767	0.270066103523219
20	29703564	29860380	3	gain	-	-1	somatic	0	1.70729558817804e-08	5.16532250305346e-09
20	29889783	29893050	6	gain	-	-1	germline	1	0.0832725702176933	0.270050716202211
20	30938490	30941757	6	gain	-	-1	germline	1	0.0832725702176933	0.270050716202211
20	31065903	31069170	65	gain	-	-1	germline	1	0.0832661271106778	0.270039525825263
20	31163913	31167180	4	gain	-	-1	germline	1	0.0832822356354662	0.270067502402318
20	31183515	31190049	14	gain	-	-1	germline	1	0.0143081656930202	0.0366348796077093
20	31190049	31235787	3	gain	AAB	2.86651	germline	1	0.000597541062352082	0.00088933460440721
20	31235787	31239054	4	gain	AABB	19.8177	germline	1	0.0832814301492767	0.270066103523219
20	31239054	31242321	45	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	65.8156	germline	1	0.0832677378495704	0.270042323387766
20	31242321	31245588	3	gain	AAB	5.67474	germline	1	0.08330156919732	0.270101077087426
20	31892454	31918590	2	neutral	AA	18.1929	somatic	0	0.246367788059051	0.1132790383748
20	35319537	35358741	2	neutral	AA	100	somatic	0	0.389129677671355	0.752349476177044
20	37054314	37201329	2	neutral	AA	54.5681	somatic	0	0.0611001913773826	0.0419283818113811
20	38903436	38929572	2	neutral	AA	36.8736	somatic	0	0.1124554241965	0.140118512492288
20	40494465	40559805	2	neutral	AA	17.4508	somatic	0	0.483979273908024	0.688033132915269
20	44676225	44679492	0	loss	-	-1	somatic	0	0.0832701540052356	0.270046519771196
20	44748099	44777502	2	neutral	AA	15.8532	somatic	0	0.897427212863496	0.96913162448492
20	45525645	45783738	2	neutral	AA	9.8653	somatic	0	0.604091285681891	0.813972031391224
20	45865413	45871947	2	neutral	AA	100	somatic	0	0.46525306359127	0.473322055032889
20	47998764	48031434	2	neutral	AA	9.61253	somatic	0	0.557717460754511	0.834725852819719
20	49779279	49795614	2	neutral	AA	28.848	somatic	0	0.00416087315614059	0.00654218005243412
20	51376842	51383376	2	neutral	AA	100	somatic	0	0.441170890660287	0.656567713812157
20	53667009	53676810	1	loss	A	-1	somatic	0	0.00275374596943031	0.00506225412110051
20	60220611	60269616	2	neutral	AA	100	somatic	0	0.505941033519358	0.616139300853443
21	0	8990784	6	gain	AAAABB	-1	somatic	0	0.00010755403550189	9.08247627735559e-05
21	8990784	8997318	9	gain	AAAAAABBB	2.66182	somatic	0	0.0143081656930202	0.0366344969018845
21	8997318	10689624	6	gain	AAAABB	-1	somatic	0	9.14037004048232e-11	1.38444811170757e-12
21	10689624	10692891	39	gain	AAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBB	100	germline	1	0.0832677378495704	0.270042323387766
21	10692891	10754964	6	gain	AAAABB	0.262233	germline	1	1.97331867799483e-11	1.87405646556726e-13
21	14035032	14080770	2	neutral	AA	100	somatic	0	0.273975540508022	0.394371856583023
21	15214419	15217686	1	loss	A	-1	germline	1	0.083280624669398	0.270064704649417
21	16325199	16328466	2	neutral	AA	100	somatic	0	0.0915116171006435	0.284077561151499
21	18027306	18033840	2	neutral	AA	100	somatic	0	0.256542801046861	0.710525704748311
21	20288070	20291337	3	gain	-	-1	somatic	0	0.0832991523032836	0.270096880085179
21	26008587	26034723	2	neutral	AA	36.3786	somatic	0	0.508038217967071	0.689407509559022
21	28429434	28432701	2	neutral	AA	100	somatic	0	0.446808149720501	0.678451823871541
21	29458539	29798307	2	neutral	AA	89.4036	somatic	0	0.00427856785049448	0.011452405924147
21	30154410	30157677	2	neutral	AA	100	somatic	0	0.825388749649123	0.908437968628419
21	37756719	37773054	2	neutral	AA	45.2826	germline	1	0.205545065573359	0.146163608081723
21	37903734	37907001	2	neutral	AA	100	somatic	0	0.305412678633049	0.550895569693566
21	41804532	41807799	3	gain	AAA	11.239	germline	1	0.0832935131047647	0.270087087265058
21	42144300	42163902	2	neutral	AA	100	somatic	0	0.0958237538839978	0.0867894883695324
21	42670287	42673554	2	neutral	AA	54.5678	somatic	0	0.515553636889103	0.731624676009416
21	43333488	43340022	3	gain	AAA	100	somatic	0	0.0146685759893288	0.0375490410972101
21	44676225	44689293	2	neutral	AA	100	somatic	0	0.157640715207029	0.43588082769971
21	45849078	45852345	2	neutral	AA	100	somatic	0	0.484063343474918	0.707910197785228
21	45966690	45969957	1	loss	A	-1	germline	1	0.0832894852951602	0.270080092552225
22	11212344	11215611	1	loss	A	-1	somatic	0	0.0833466949803207	0.270179429867237
22	11627253	11630520	4	gain	AABB	25.3832	germline	1	0.0832822356354662	0.270067502402318
22	16563690	16566957	2	neutral	AA	8.40034	somatic	0	0.993266873653458	0.96238051292121
22	17612397	17710407	2	neutral	AA	63.4086	somatic	0	1.09065469882806e-05	0.000149711929945506
22	17863956	17880291	2	neutral	AA	3.84411	germline	1	0.127390588979049	0.202729396371861
22	19242630	19278567	2	neutral	AA	100	germline	1	0.388606853682198	0.290145438880375
22	20248866	20297871	2	neutral	AA	9.45642	somatic	0	0.549959845016071	0.664877783140253
22	20670309	20673576	1	loss	A	-1	somatic	0	0.0848870634236933	0.272843433206376
22	22346280	22356081	2	neutral	AA	1.38172	somatic	0	0.0204573673766561	0.0319518710002274
22	24430626	24495966	2	neutral	AA	100	somatic	0	0.317223476648998	0.283985948877331
22	27798903	27805437	2	neutral	AA	100	somatic	0	0.703621003713667	0.8847525120459
22	28867212	28873746	1	loss	A	-1	somatic	0	0.0154165324957058	0.0389558475835188
22	29050164	29118771	2	neutral	AA	100	somatic	0	0.55286155899239	0.692454164721581
22	29118771	29122038	4	gain	AAAB	32.8338	germline	1	0.0832822356354662	0.270067502402318
22	34466850	34470117	1	loss	A	-1	somatic	0	0.083458789195019	0.270373984346451
22	35247663	35250930	1	loss	A	-1	somatic	0	0.0840819562579662	0.271453583802326
22	35257464	35277066	2	neutral	AA	100	somatic	0	0.564570543330279	0.583700587976428
22	35404479	35407746	2	neutral	AA	100	somatic	0	0.216094227051552	0.454626691946989
22	35642970	35682174	2	neutral	AA	18.191	somatic	0	0.410065492236766	0.532854398669882
22	36302904	36319239	2	neutral	AA	20.4889	germline	1	0.4400604387661	0.668745503053011
22	40674150	40680684	2	neutral	AA	54.5678	somatic	0	0.954659421710258	0.912908104552513
22	42562476	42595146	2	neutral	AA	54.5678	somatic	0	0.278345252484189	0.318487783950221
22	43134201	43137468	2	neutral	AA	100	germline	1	0.777946575584701	0.887949872502656
22	44633754	44640288	2	neutral	AA	36.3788	somatic	0	0.954283588116397	0.781908624261606
22	46299924	46312992	2	neutral	AA	27.2844	somatic	0	0.784395804073339	0.415143852245716
22	46878183	46901052	2	neutral	AA	36.8548	germline	1	0.402069062465206	0.362143842643499
22	48282993	48286260	3	gain	AAB	84.209	somatic	0	0.0843160025429526	0.271858188365707
22	50641767	50645034	4	gain	AABB	20.5991	germline	1	0.0832814301492767	0.270066103523219
X	3995541	3998808	49	gain	-	-1	somatic	0	0.083266932476969	0.27004092460387
X	15021666	15024933	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
X	22898403	22901670	4	gain	-	-1	somatic	0	0.0832798191958299	0.270063305780889
X	26083728	26086995	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
X	30017196	30020463	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
X	37286271	37289538	7	gain	-	-1	somatic	0	0.0832725702176933	0.270050716202211
X	46701765	46786707	2	neutral	AA	54.6578	somatic	0	0.341036152408092	0.650101405346725
X	54843129	54872532	2	neutral	AA	100	germline	1	0.27590663009443	0.19572892839671
X	55238436	55251504	2	neutral	AA	36.3786	somatic	0	0.322542663382022	0.723738836544799
X	57695220	57698487	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
X	58521771	62654526	2	neutral	AA	1.02519	somatic	0	3.10731806922575e-18	1.11022302462516e-16
X	63252387	63285057	3	gain	AAB	62.7102	germline	1	0.000107899290027338	9.10670180471751e-05
X	70511661	70514928	0	loss	-	-1	germline	1	0.083266932476969	0.270040924603878
X	70835094	70972308	2	neutral	AA	52.1501	somatic	0	3.43630794409704e-05	0.000344213485057421
X	81671733	81675000	4	gain	AAAB	100	somatic	0	0.0832814301492767	0.270066103523219
X	82726974	82733508	1	loss	A	-1	somatic	0	0.0143529608193535	0.0367022903410901
X	88803594	88813395	2	neutral	AA	100	somatic	0	0.575767492575551	0.802207681690355
X	88904871	88908138	3	gain	-	-1	somatic	0	0.0832919019619895	0.270084289364054
X	95030496	95040297	2	neutral	AA	100	somatic	0	0.950735899021908	0.99988523270533
X	96670530	96739137	2	neutral	AA	54.5679	somatic	0	0.812359407917572	0.93905247250772
X	99846054	99989802	2	neutral	AA	27.2843	somatic	0	0.450613663383815	0.46552144855924
X	100666071	100708542	2	neutral	AA	37.1591	somatic	0	0.183253483828695	0.366029308779605
X	100960101	100976436	2	neutral	AA	100	somatic	0	0.754910294410689	0.89713064011569
X	104132358	104312043	2	neutral	AA	26.8553	somatic	0	0.0344417475597954	0.128953106091407
X	105445692	105448959	3	gain	-	-1	somatic	0	0.0832943186856192	0.270088486223493
X	106278777	106285311	3	gain	-	-1	somatic	0	0.0143348751941962	0.0367026736664613
X	106301646	106308180	4	gain	AAAB	59.345	germline	1	0.0143110888770133	0.0366394723504557
X	108771498	108774765	4	gain	AABB	26.3378	somatic	0	0.0832822356354662	0.270067502402318
X	108774765	108778032	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
X	121502997	121506264	39	gain	-	-1	somatic	0	0.0832677378495704	0.270042323387766
X	124348554	124351821	3	gain	-	-1	somatic	0	0.0832967354660503	0.270092683130535
X	125269848	125273115	3	gain	-	-1	somatic	0	0.0833031804915687	0.27010387511537
X	125276382	125279649	0	loss	-	-1	germline	1	0.0832653217506967	0.270038127051953
X	125279649	125282916	4	gain	AABB	17.5593	somatic	0	0.0832822356354662	0.270067502402318
X	126775935	126779202	0	loss	-	-1	somatic	0	0.0832653217506967	0.270038127051953
X	128236284	128246085	1	loss	A	-1	somatic	0	0.00296068255285128	0.00582147283859036
X	141382692	141385959	1	loss	A	-1	germline	1	0.0832765973646639	0.270057710359705
X	141787800	141791067	6	gain	AAABBB	54.8472	somatic	0	0.0832725702176933	0.270050716202211
X	145312893	145355364	2	neutral	AA	100	somatic	0	0.0971616245897981	0.247869271641019
X	145492578	145495845	4	gain	AAAB	100	somatic	0	0.0832822356354662	0.270067502402318
