chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	5665739	5675402	3	gain	-	-1	germline	1	0.00270324586275532	0.00496384317923726
1	16610697	16636465	8	gain	-	-1	germline	1	0.00270032739033507	0.0049581492157218
1	16720211	16723432	5	gain	-	-1	germline	1	0.0832818216301879	0.270066799734326
1	31430518	31433739	6	gain	-	-1	germline	1	0.0832763151056367	0.270057236479735
1	55662101	55668543	1	loss	A	-1	germline	1	0.0143098499414231	0.0366377804264091
1	72288903	72346881	1	loss	A	-1	germline	1	6.58618278265127e-12	3.77475828372553e-14
1	105471645	105481308	1	loss	A	-1	germline	1	0.0164019952543225	0.0430073990364414
1	109642840	109649282	1	loss	A	-1	germline	1	0.015551483666602	0.0404051368618847
1	125068209	125074651	3	gain	-	-1	somatic	0	0.0143317110669569	0.0366953840095134
1	125081093	125084314	5	gain	-	-1	germline	1	0.0832802483073629	0.270064067350647
1	125084314	125161618	3	gain	-	-1	germline	1	0.000119833886842477	0.000126649615296959
1	125161618	125164839	5	gain	-	-1	germline	1	0.0832826083006294	0.270068165933732
1	125164839	143750009	1	loss	A	-1	germline	1	2.42007556090126e-28	0
1	152788135	152797798	1	loss	A	-1	somatic	0	0.00521026656114664	0.00855782717084563
1	153438777	153516081	2	neutral	AA	95.8462	somatic	0	0.0766782123084027	0.0922710899639354
1	154334215	154359983	2	neutral	AA	54.5679	somatic	0	0.620094042163841	0.392304299745351
1	156891689	157365176	2	neutral	AA	100	somatic	0	0.0555387891838022	0.0533479817140139
1	158128553	158196194	2	neutral	AA	100	somatic	0	0.0356598712911677	0.0181689725083763
1	159864672	159887219	2	neutral	AA	100	somatic	0	0.626356096481383	0.837854962923766
1	168252156	168261819	2	neutral	AA	55.0905	somatic	0	0.172789399939698	0.530846984295419
1	181422825	181432488	2	neutral	AA	18.8605	somatic	0	0.907925047182444	0.996546166404346
1	187745648	187755311	1	loss	A	-1	germline	1	0.0206747054407978	0.0555200116598004
1	193862327	194145775	2	neutral	AA	42.4041	somatic	0	0.0420128819001827	0.103404304450123
1	195424512	195437396	2	neutral	AA	100	somatic	0	0.486014800557281	0.624254287508029
1	195827137	195859347	2	neutral	AA	100	somatic	0	0.815642044951526	0.961569555724309
1	196770890	196825647	1	loss	A	-1	germline	1	0.000193874541951259	0.00026132058907935
1	204298367	204362787	2	neutral	AA	60.5552	somatic	0	0.00292662097480589	0.0103949811507262
1	222200685	222207127	1	loss	A	-1	somatic	0	0.0170232721772413	0.0433693950089739
1	223376350	223386013	2	neutral	AA	100	somatic	0	0.672491885877754	0.688417246046865
1	228207850	228211071	2	neutral	AA	100	somatic	0	0.238159911418681	0.479848043755988
1	230984352	231013341	2	neutral	AA	3.28717	somatic	0	0.894375143706909	0.940476534124126
1	233441975	233467743	2	neutral	AA	100	germline	1	0.0437282397532421	0.203307416246896
1	234775469	234781911	6	gain	AAAABB	4.61363	germline	1	0.0143102223276792	0.0366385280175341
1	236096079	236099300	6	gain	AAAABB	10.0846	germline	1	0.0832802483073629	0.270064067350647
1	236501925	236508367	2	neutral	AA	18.1893	somatic	0	0.0968391149262494	0.142510138694939
1	237513319	237545529	2	neutral	AA	77.3547	somatic	0	0.514904208004893	0.855552960152538
1	244934503	244940945	2	neutral	AA	45.9945	somatic	0	0.337063845009308	0.642616857285775
1	247775425	247839845	2	neutral	AA	56.4051	somatic	0	0.875274419792204	0.868055483074202
2	2779723	2828038	2	neutral	AA	100	somatic	0	0.937159484886872	0.995958609536102
2	3169464	3179127	2	neutral	AA	26.3799	somatic	0	0.0213108170471267	0.0391893271235456
2	3179127	3182348	5	gain	AAAAA	2.74225	germline	1	0.0832826083006294	0.270068165933732
2	3301525	3307967	2	neutral	AA	35.0955	somatic	0	0.344238598339703	0.825856848758207
2	4164753	4177637	1	loss	A	-1	germline	1	0.0191724885006949	0.0516109112674914
2	5021539	5024760	4	gain	AABB	14.3186	germline	1	0.0832904753361134	0.270081828205264
2	9778956	9782177	2	neutral	AA	100	somatic	0	0.597883418929443	0.788520416499245
2	13586178	13605504	2	neutral	AA	100	somatic	0	0.262548325646311	0.521450818556413
2	89772491	89782154	6	gain	-	-1	germline	1	0.00270089276074716	0.0049589839555364
2	89782154	89791817	4	gain	-	-1	germline	1	0.0143132017254809	0.0366445092270082
2	89795038	89824027	5	gain	-	-1	germline	1	9.64947152254641e-07	2.25428854250254e-07
2	89824027	89827248	9	gain	-	-1	germline	1	0.083268449153613	0.270043575116272
2	89827248	89843353	25	gain	-	-1	germline	1	0.000107518150663411	9.08056497562759e-05
2	89843353	89849795	4	gain	-	-1	germline	1	0.0143123326779366	0.0366415185154912
2	91411980	91415201	5	gain	-	-1	germline	1	0.0832818216301879	0.270066799734326
2	109198342	109201563	13	gain	-	-1	germline	1	0.0832653029413316	0.27003811071214
2	125683420	125696304	1	loss	A	-1	somatic	0	0.00222121760056539	0.00271505304818065
2	132241376	132247818	3	gain	-	-1	somatic	0	0.0143156849749604	0.0366463785301604
2	146104560	146120665	1	loss	A	-1	germline	1	0.000285295136787595	0.000268703961156969
2	172040052	172046494	1	loss	A	-1	somatic	0	0.0193610625832566	0.047032831944359
2	176401286	176407728	1	loss	A	-1	somatic	0	0.0219024682029658	0.0549153823288807
2	240624805	240640910	2	neutral	AA	40.7382	somatic	0	0.00224990080738283	0.0111658550446473
3	186818	193260	1	loss	A	-1	germline	1	0.0210997055141173	0.054568431273481
3	1739340	1749003	1	loss	A	-1	germline	1	0.00810104043313225	0.0106596455732065
3	6606271	6615934	1	loss	A	32.619	somatic	0	0.0105406973202492	0.0193513291816676
3	13544305	13566852	2	neutral	AA	100	somatic	0	0.59499221363752	0.693593584600901
3	32058613	32068276	1	loss	A	-1	germline	1	0.0252527696025375	0.0556509699903112
3	34690170	34706275	1	loss	A	15.1968	somatic	0	0.00137991598954973	0.00322469517947499
3	51068955	51104386	2	neutral	AA	38.3356	somatic	0	0.738566466593724	0.951916261439022
3	52991892	53004776	1	loss	A	-1	germline	1	0.0011144872220676	0.00158515769774537
3	53971076	53993623	2	neutral	AA	10.9144	somatic	0	0.744031488611311	0.948599715324122
3	54821420	54837525	2	neutral	AA	36.3803	somatic	0	0.651079017943325	0.838262310815436
3	65202703	65228471	1	loss	A	-1	germline	1	6.03090790997552e-05	3.70085462459979e-05
3	68584753	68591195	1	loss	A	-1	germline	1	0.0233933182373846	0.0502949411519056
3	75712826	75857771	2	neutral	AA	0.818106	germline	1	0.092497384610561	0.342927236119469
3	81459090	82141942	2	neutral	AA	100	somatic	0	0.00666908321727288	0.0304584741895823
3	87385730	87607979	2	neutral	AA	100	somatic	0	0.0459511508028992	0.0840349027193213
3	90287851	90510100	2	neutral	AA	1.14969	germline	1	9.70298481860425e-20	2.22044604925031e-16
3	98382224	98398329	2	neutral	AA	100	somatic	0	0.607604142217137	0.615276615240352
3	98688219	98697882	1	loss	A	-1	germline	1	0.00627025911286467	0.00942208554786506
3	99177811	99184253	1	loss	A	-1	germline	1	0.0186414841538846	0.0499454270360506
3	99184253	99222905	2	neutral	AA	100	somatic	0	0.310312002582814	0.32528333432657
3	99222905	99229347	1	loss	A	-1	somatic	0	0.0277452304188628	0.0563836064883706
3	107826196	107874511	2	neutral	AA	100	germline	1	0.395992968360675	0.67803021489576
3	131986917	131996580	1	loss	A	14.8546	somatic	0	0.00760341009756232	0.0107717128898918
3	145038409	145054514	2	neutral	AA	58.0998	somatic	0	0.244539859555499	0.444327816482188
3	146665014	146674677	1	loss	A	-1	germline	1	0.0260827477887664	0.0563602472344582
3	148674918	148732896	2	neutral	AA	100	somatic	0	0.984418853168025	0.976177476970703
3	162808666	162827992	1	loss	A	-1	germline	1	8.21984581128173e-05	3.881536161221e-05
3	168976881	169021975	2	neutral	AA	100	somatic	0	0.841282192127596	0.42814388885518
3	178755837	178762279	1	loss	A	-1	germline	1	0.0216306988119258	0.0561298180298589
3	180714205	180720647	2	neutral	AA	100	somatic	0	0.191542579988218	0.535491179293875
3	186569983	186634403	2	neutral	AA	100	somatic	0	0.316579001078755	0.296217990276728
3	188692622	188708727	2	neutral	AA	54.5678	somatic	0	0.14596948773665	0.173694445427098
3	190019674	190022895	0	loss	-	-1	germline	1	0.0832653029413316	0.270038110712129
3	191346726	191353168	1	loss	A	-1	germline	1	0.0218633858862916	0.0533349897547748
3	193156928	193169812	1	loss	A	-1	germline	1	0.0205661094519793	0.0560011318667333
4	125619	135282	1	loss	A	-1	germline	1	0.0243144939169171	0.0559789888793742
4	554012	557233	4	gain	-	-1	germline	1	0.0832865417431277	0.270074997006437
4	6892940	6899382	1	loss	A	-1	somatic	0	0.0209913367250383	0.0573485283171983
4	7862461	7865682	5	gain	-	-1	germline	1	0.0832818216301879	0.270066799734326
4	10229896	10233117	0	loss	-	-1	germline	1	0.0832653029413316	0.270038110712129
4	40294710	40297931	4	gain	-	-1	germline	1	0.0832889018808604	0.270079095710599
4	49146018	49155681	61	gain	-	-1	somatic	0	0.0143061265489838	0.0366314264407207
4	49651715	49658157	28	gain	-	-1	somatic	0	0.0143061265489838	0.0366314264407207
4	91009355	91015797	1	loss	A	-1	germline	1	0.0143088569531974	0.0366374066358529
4	97432029	97441692	1	loss	A	-1	somatic	0	0.00770378256379529	0.0121012486965542
4	106135171	106141613	1	loss	A	-1	germline	1	0.0231384944294801	0.0492899375091604
4	170345806	170352248	1	loss	A	-1	germline	1	0.0254533171652088	0.0543485325266866
4	172503876	172513539	1	loss	A	-1	somatic	0	0.00504093328271542	0.00956297314143906
4	185519937	185523158	0	loss	-	-1	germline	1	0.0832668760354348	0.270040842904106
5	1175665	1182107	1	loss	A	-1	somatic	0	0.0209354714650311	0.0560708504044619
5	3320851	3333735	2	neutral	AA	14.367	somatic	0	0.00943881531359735	0.0274299848130838
5	12809917	12819580	1	loss	A	-1	germline	1	0.00554188874381146	0.00941472997556281
5	32106928	32168127	3	gain	AAB	10.5228	germline	1	9.42405658715451e-13	3.66373598126302e-15
5	42707239	42716902	2	neutral	AA	100	somatic	0	0.621146225035412	0.837677463259281
5	45371006	45377448	1	loss	A	-1	germline	1	0.0258374282013014	0.055891570710238
5	46269665	46276107	0	loss	-	-1	germline	1	0.0143068711590943	0.0366336689138016
5	46276107	46321201	2	neutral	AA	100	somatic	0	0.0399954630164968	0.101143854057543
5	46321201	46404947	2	neutral	AA	5.54728	somatic	0	2.58821787860679e-05	0.000452391809963926
5	46404947	46411389	1	loss	A	-1	germline	1	0.0162039453539057	0.0422480897874731
5	46411389	50254042	2	neutral	AA	-1	somatic	0	6.82289930708952e-12	9.80351244628253e-10
5	50254042	50572921	2	neutral	AA	58.5311	somatic	0	0.00138157111425333	0.000939797471760317
5	58026315	58029536	1	loss	A	-1	germline	1	0.0833526460810124	0.270189777885935
5	58035978	58039199	1	loss	A	-1	germline	1	0.0833451678644555	0.270177478231849
5	72540141	72553025	2	neutral	AA	100	somatic	0	0.61795931536013	0.656410355258091
5	79078771	79094876	3	gain	AAB	6.90208	germline	1	0.000107862217379145	9.10282605365298e-05
5	84084205	84122857	2	neutral	AA	100	somatic	0	0.0838093642608846	0.500649133439068
5	84651101	84660764	1	loss	A	-1	germline	1	0.0145136321457121	0.0372048880214718
5	89788596	89807922	2	neutral	AA	100	somatic	0	0.327109371567136	0.834591130007693
5	118049650	118059313	1	loss	A	-1	somatic	0	0.00563398630156003	0.0100720409402418
5	120043449	120049891	1	loss	A	-1	somatic	0	0.027601649518783	0.0560292264897803
5	120059554	120146521	2	neutral	AA	54.5678	somatic	0	0.372524343245435	0.393345527186879
5	138235657	138261425	2	neutral	AA	100	somatic	0	0.0168711118630711	0.0161030194938737
5	142229697	142249023	2	neutral	AA	28.0484	somatic	0	0.45293770220752	0.40990147691678
5	145991825	146065908	2	neutral	AA	18.8838	germline	1	0.816432930944913	0.911924131681885
5	146175422	146281715	2	neutral	AA	100	somatic	0	0.108440965204833	0.277150131561527
5	150823325	150842651	1	loss	A	-1	germline	1	3.44016721251664e-05	3.16269817659531e-05
5	163047020	163111440	2	neutral	AA	100	somatic	0	0.871109443912539	0.940265750100605
5	178585124	178588345	3	gain	AAB	5.66162	somatic	0	0.0832975561827285	0.270094124680979
5	180949338	181000874	1	loss	A	-1	germline	1	1.0178121464118e-10	7.62945262522408e-13
5	181042747	181049189	3	gain	AAB	12.5458	germline	1	0.0145053390258192	0.0372166339363879
6	254459	383299	3	gain	-	-1	germline	1	1.3310758039775e-26	0
6	5830010	5839673	1	loss	A	-1	somatic	0	0.0222735911758741	0.0561276531381646
6	19039331	19048994	1	loss	A	-1	somatic	0	0.00415792389024992	0.00945880488081097
6	20959047	20962268	4	gain	-	-1	germline	1	0.0832841816595705	0.27007089834768
6	32490227	32667382	1	loss	A	-1	germline	1	1.44040057965082e-13	2.44249065417534e-15
6	35656470	35662912	1	loss	A	-1	somatic	0	0.0196262321081652	0.053033245070679
6	60232700	60239142	4	gain	-	-1	germline	1	0.0143149399602154	0.0366471262747813
6	73883298	73892961	1	loss	A	-1	germline	1	0.00461104972522102	0.00804183266923519
6	95873065	95895612	2	neutral	AA	54.6166	somatic	0	0.859617385466222	0.881202458311765
6	105088346	105114114	2	neutral	AA	100	somatic	0	0.292061540217264	0.0745290818565097
6	105326700	105329921	2	neutral	AA	36.3786	somatic	0	0.418257402959164	0.654734361229331
6	108177285	108206274	2	neutral	AA	62.2091	somatic	0	0.309962584257906	0.409531107130642
6	118645535	118648756	6	gain	AAAAAA	10.9136	germline	1	0.0832794616549793	0.270062701166375
6	119292956	119302619	2	neutral	AA	100	somatic	0	0.768279838301228	0.976666987068643
6	119450785	119528089	2	neutral	AA	54.6231	somatic	0	0.0961314624191397	0.0483162803832398
6	124224307	124227528	2	neutral	AA	100	somatic	0	0.471727442810545	0.698340040952022
6	125860575	125867017	1	loss	A	-1	somatic	0	0.0293956087070017	0.0567612202509318
6	127535495	127538716	2	neutral	AA	100	somatic	0	0.660948384817575	0.827223992663272
6	133726257	133729478	2	neutral	AA	100	somatic	0	0.317402203925559	0.562824485828768
6	133800340	133803561	2	neutral	AA	100	somatic	0	0.309378010496742	0.554858268937691
6	134299595	134428435	2	neutral	AA	55.9453	somatic	0	0.712499325702306	0.445356903145814
6	137047108	137050329	2	neutral	AA	100	somatic	0	0.182126038491489	0.413580989989233
6	138934614	138937835	2	neutral	AA	100	somatic	0	0.203232748307058	0.439423360694459
6	140802794	140809236	2	neutral	AA	100	somatic	0	0.393558850497728	0.701830623840205
6	140809236	141421226	3	gain	AAB	0.427151	germline	1	3.24935394616864e-119	0
6	141437331	141446994	2	neutral	AA	100	somatic	0	0.969491228340431	0.999450946540416
6	147985624	147988845	2	neutral	AA	100	somatic	0	0.906957858598466	0.938206683247931
6	149918224	149921445	2	neutral	AA	100	somatic	0	0.155857141377826	0.379523916298692
6	150823325	150829767	2	neutral	AA	9.96149	somatic	0	0.640863339790188	0.797743646132599
6	153892938	154034662	2	neutral	AA	8.85603	germline	1	0.0192457460391459	0.0835485430843793
6	154131292	154140955	2	neutral	AA	100	somatic	0	0.828551952982542	0.994724734357744
6	156460075	156463296	2	neutral	AA	100	somatic	0	0.436388568734213	0.669874746848818
6	156685545	156688766	2	neutral	AA	100	somatic	0	0.570214176407182	0.77019564961665
6	156759628	156762849	2	neutral	AA	100	somatic	0	0.51184124814656	0.728911779340445
6	157313640	157316861	4	gain	AABB	8.96874	germline	1	0.0832833949770903	0.270069532138184
6	158766311	158779195	2	neutral	AA	32.6997	somatic	0	0.622030400633094	0.796331046612424
6	163288595	163291816	2	neutral	AA	100	somatic	0	0.290898540013105	0.536215659206049
6	165311383	165317825	1	loss	A	-1	somatic	0	0.0206383087350669	0.0525961804692106
6	165929815	165933036	2	neutral	AA	100	somatic	0	0.276495990996867	0.521346079581834
6	167260088	167298740	2	neutral	AA	28.2766	germline	1	0.015287964216677	0.0644499671429478
6	167337392	167343834	2	neutral	AA	100	somatic	0	0.547741105941919	0.93122550900539
6	167830205	167843089	2	neutral	AA	54.8986	somatic	0	0.264862450646582	0.367874955813024
7	905101	908322	4	gain	-	-1	germline	1	0.0832928355641405	0.270085926985098
7	9762851	9766072	0	loss	-	-1	germline	1	0.0832700222958665	0.270046307348596
7	45441868	45448310	1	loss	A	-1	germline	1	0.020546921961349	0.0551010204898151
7	56696042	56702484	1	loss	A	-1	germline	1	0.0190296419647367	0.0467478459794706
7	57411104	57417546	1	loss	A	-1	somatic	0	0.0235453827006563	0.0493523888924567
7	57485187	57498071	3	gain	-	-1	germline	1	0.00054022278192278	0.000694482564308041
7	58061746	58068188	4	gain	-	-1	somatic	0	0.0143145674656686	0.0366460046628556
7	61047613	61095928	3	gain	-	-1	somatic	0	4.21442127026894e-05	8.60906722781607e-05
7	62297361	62348897	3	gain	AAB	0.441207	germline	1	3.03292449702862e-07	2.28277369673791e-07
7	62348897	62358560	3	gain	AAB	22.2843	germline	1	0.00385516984305843	0.00927206447802564
7	62403654	62406875	5	gain	-	-1	germline	1	0.0832826083006294	0.270068165933732
7	62439085	62455190	3	gain	AAB	2.3646	germline	1	0.00010799172891962	9.14843683444966e-05
7	66726236	66732678	2	neutral	AA	15.1049	somatic	0	0.785235751188464	0.857462633557568
7	70955409	70961851	1	loss	A	-1	somatic	0	0.0270474553329329	0.0536934090324785
7	74414763	74417984	1	loss	A	-1	somatic	0	0.0832833949770903	0.270069532138173
7	100649808	100704565	2	neutral	AA	54.6208	somatic	0	0.0536551586661048	0.0391345399387366
7	100949361	100955803	3	gain	AAB	0.952694	germline	1	0.014318665375982	0.0366579700719716
7	100955803	100959024	14	gain	AAAAAAAAAAAAAB	10.6529	germline	1	0.0832653029413316	0.27003811071214
7	100959024	100971908	4	gain	AABB	0.239217	germline	1	0.000532624019170978	0.00067148679077067
7	109404486	109423812	2	neutral	AA	97.5467	somatic	0	0.825959994388962	0.996934108676955
7	110399775	110467416	2	neutral	AA	21.8308	somatic	0	0.239553179386386	0.463036727817933
7	110541499	110544720	0	loss	-	-1	germline	1	0.0832653029413316	0.270038110712129
7	114886628	114931722	2	neutral	AA	12.1985	somatic	0	0.707912966481289	0.921063996786579
7	118629430	118635872	2	neutral	AA	100	somatic	0	0.0474771880511538	0.0985989913064036
7	119189884	119196326	1	loss	A	-1	germline	1	0.0164681082492289	0.0424644430178092
7	119608614	119634382	2	neutral	AA	100	somatic	0	0.741056675472126	0.621761559774025
7	133710152	133748804	2	neutral	AA	100	somatic	0	0.80752764437082	0.72694347885997
7	134099893	134112777	1	loss	A	-1	germline	1	0.000952016603696402	0.0011695567883121
7	143846639	143849860	4	gain	AABB	100	germline	1	0.0832841816595705	0.27007089834768
7	148375365	148378586	0	loss	-	-1	germline	1	0.0832653029413316	0.270038110712129
7	150784673	150919955	2	neutral	AA	18.3317	somatic	0	2.21883909499296e-05	0.000657614116780225
7	152398394	152401615	2	neutral	AA	54.5706	somatic	0	0.933479322985944	0.946421091581925
7	152401615	152408057	12	gain	AAAAAAAAAABB	5.7769	germline	1	0.0143061265489838	0.0366314264407207
7	152414499	152430604	2	neutral	AA	13.5038	somatic	0	0.559380302415117	0.750888567567157
7	152868660	152875102	2	neutral	AA	16.1704	somatic	0	0.495167179422129	0.777834525855133
7	154601558	154608000	1	loss	A	-1	germline	1	0.0152236487713264	0.0383652839722827
7	155326283	155345609	3	gain	AAB	2.18816	germline	1	0.000368215435901227	0.000818569243615452
7	155345609	155348830	1	loss	A	-1	somatic	0	0.0907390960312725	0.282784796244562
7	155348830	155371377	2	neutral	AA	80.8104	somatic	0	0.017423572852791	0.0147060779845211
7	158592377	158595598	5	gain	AAAAB	100	germline	1	0.0832818216301879	0.270066799734326
8	644200	650642	0	loss	-	-1	germline	1	0.0150970257914697	0.0390227646110949
8	25114137	25133463	1	loss	A	-1	germline	1	3.79344734469759e-05	3.61344561801147e-05
8	32821990	32834874	0	loss	-	-1	germline	1	0.0143112153994876	0.0366467524007993
8	38072220	38078662	1	loss	A	-1	somatic	0	0.0215534392200874	0.0563276668307476
8	40916363	40922805	0	loss	-	-1	germline	1	0.0143067470550351	0.0366329214094283
8	42520421	42523642	0	loss	-	-1	somatic	0	0.0832700222958665	0.270046307348596
8	43235483	43238704	3	gain	-	-1	somatic	0	0.0833219494980101	0.270136482336307
8	43238704	43241925	5	gain	-	-1	somatic	0	0.0832818216301879	0.270066799734326
8	43776611	43779832	4	gain	-	-1	germline	1	0.0832833949770903	0.270069532138184
8	50118760	50125202	1	loss	A	-1	somatic	0	0.0195141461323295	0.0448141354667375
8	54911608	54947039	2	neutral	AA	54.5678	somatic	0	0.715809729910854	0.657205006099166
8	56460909	56464130	2	neutral	AA	100	somatic	0	0.117160929387412	0.324698121503071
8	58670515	58680178	2	neutral	AA	36.3786	somatic	0	0.721681933333127	0.924001818331547
8	59221306	59224527	4	gain	AAAB	100	somatic	0	0.0832912620727694	0.270083194460164
8	61166790	61170011	2	neutral	AA	100	somatic	0	0.912300715044096	0.939930258457653
8	61559752	61630614	2	neutral	AA	55.8585	somatic	0	0.114015827208716	0.251317599372458
8	65399184	65418510	2	neutral	AA	100	somatic	0	0.191032156620081	0.370156341780628
8	67244817	67251259	1	loss	A	-1	somatic	0	0.0267886228470641	0.0562126790513331
8	73052280	73097374	2	neutral	AA	100	somatic	0	0.92662367950369	0.995763601381612
8	77036657	77072088	2	neutral	AA	35.6545	somatic	0	0.643974082330926	0.585361794316592
8	79745518	79748739	2	neutral	AA	100	somatic	0	0.847817224771486	0.917313759910938
8	81024255	81143432	2	neutral	AA	100	germline	1	0.0723837657452981	0.20243780232531
8	85639948	85643169	4	gain	-	-1	germline	1	0.0832881151622633	0.270077729470833
8	86174634	86181076	1	loss	A	-1	somatic	0	0.0261246170885666	0.0563700245141903
8	88777202	88780423	2	neutral	AA	100	somatic	0	0.312146982398739	0.557590557348965
8	92313860	92329965	2	neutral	AA	100	somatic	0	0.514809797270759	0.613441691035487
8	92433037	92439479	2	neutral	AA	100	somatic	0	0.251994839163341	0.499918896441651
8	94568560	94607212	2	neutral	AA	27.9419	somatic	0	0.00744969978934188	0.0189978552565707
8	97032625	97058393	2	neutral	AA	54.5678	germline	1	0.0103241815007279	0.022015082394655
8	97802444	98079450	2	neutral	AA	51.4133	somatic	0	0.267950125805807	0.323278746655783
8	100997676	101120074	2	neutral	AA	52.5762	somatic	0	0.109742414634264	0.0979891765959947
8	101480826	101503373	2	neutral	AA	27.8438	somatic	0	0.820850939465666	0.998753360999436
8	102981812	102985033	1	loss	A	-1	somatic	0	0.0840144449658565	0.271336803225114
8	108882684	108885905	2	neutral	AA	100	somatic	0	0.151375348422856	0.373494599056478
8	113788267	113881676	2	neutral	AA	100	somatic	0	0.658123446810959	0.850877585389453
8	115765961	115910906	2	neutral	AA	15.8275	somatic	0	0.00416336088300261	0.0222899935397531
8	125889564	125896006	2	neutral	AA	54.5683	somatic	0	0.891017701521117	0.848486753364268
8	128192579	128218347	2	neutral	AA	54.6578	somatic	0	0.861539265036569	0.705039013827553
8	129004271	129017155	2	neutral	AA	100	somatic	0	0.56322753167773	0.436884877631587
8	138912067	138921730	2	neutral	AA	100	germline	1	0.586968505785566	0.56218028599854
8	142252244	142258686	2	neutral	AA	100	somatic	0	0.0176152706182389	0.0466670264548535
8	143621169	143630832	1	loss	A	-1	germline	1	0.00406295975028758	0.00752812982027862
8	144123645	144126866	5	gain	AAABB	9.61319	germline	1	0.0832818216301879	0.270066799734326
8	144761403	144771066	2	neutral	AA	36.3786	somatic	0	0.123624405782821	0.313973229607956
8	145044851	145067398	2	neutral	AA	100	somatic	0	0.00269492888487795	0.010734581251465
9	634537	673189	2	neutral	AA	27.5356	somatic	0	0.284785136937037	0.48555930593828
9	882554	892217	2	neutral	AA	54.603	somatic	0	0.662457948314909	0.685282590582851
9	2360993	2364214	2	neutral	AA	100	somatic	0	0.964981509011743	0.955261401178218
9	4725207	4738091	2	neutral	AA	54.5777	somatic	0	0.283940927947175	0.44658860057534
9	5852557	5858999	2	neutral	AA	100	somatic	0	0.689561320304203	0.972731404903578
9	6583724	6596608	2	neutral	AA	54.5678	somatic	0	0.862764654066758	0.647801016625957
9	6696459	6712564	1	loss	A	-1	germline	1	0.00029804608778973	0.000269682812314764
9	21773960	21796507	2	neutral	AA	54.8373	somatic	0	0.817406207695484	0.441099613728944
9	23361913	23378018	1	loss	A	-1	germline	1	0.000432649981932222	0.000261528677756862
9	28402778	28441430	2	neutral	AA	23.9708	somatic	0	0.0164619833215407	0.00385366533469045
9	28789298	28798961	2	neutral	AA	100	somatic	0	0.0423290637615985	0.138227871147218
9	28847276	28850497	1	loss	A	-1	somatic	0	0.122853686021463	0.333178009075158
9	28921359	28960011	2	neutral	AA	36.3786	somatic	0	0.922780211118233	0.994745098850607
9	29014768	29030873	2	neutral	AA	100	somatic	0	0.25874278756742	0.392788789761813
9	29439940	29662189	2	neutral	AA	60.8707	somatic	0	0.308902063000053	0.602784824483797
9	31024672	31037556	2	neutral	AA	100	somatic	0	0.0947008499104052	0.044943810190344
9	33778627	33801174	2	neutral	AA	2.16637	somatic	0	0.561895055936996	0.273962318873983
9	40868048	40871269	4	gain	AABB	7.83449	somatic	0	0.0832833949770903	0.270069532138184
9	40880932	40884153	4	gain	AABB	100	somatic	0	0.0832833949770903	0.270069532138184
9	40909921	40913142	6	gain	AAAABB	59.716	germline	1	0.0832802483073629	0.270064067350647
9	40913142	40929247	7	gain	AAAAABB	23.1457	germline	1	0.00270059875463536	0.0049586803988817
9	68790897	68864980	2	neutral	AA	49.4043	somatic	0	0.034589341264955	0.0298893155086086
9	68968052	68971273	2	neutral	AA	100	somatic	0	0.727719945374567	0.863625354498602
9	69122660	69129102	1	loss	A	-1	somatic	0	0.0221931518880018	0.0539596596975603
9	71351592	71370918	2	neutral	AA	54.568	somatic	0	0.278570163426148	0.441281562945383
9	73973486	74041127	2	neutral	AA	54.8387	germline	1	0.718409248346948	0.902277977446388
9	75390726	75397168	1	loss	A	-1	germline	1	0.0203143418011795	0.0527935261328749
9	75532450	75551776	2	neutral	AA	55.0709	somatic	0	0.87929847865232	0.50146426033722
9	76315153	76321595	2	neutral	AA	21.8271	somatic	0	0.100513085362477	0.165559920951723
9	77854791	77864454	2	neutral	AA	100	somatic	0	0.219106666068233	0.373106130224513
9	84216266	84267802	2	neutral	AA	100	somatic	0	0.0475109098043535	0.0678145195370264
9	88645141	88693456	2	neutral	AA	100	somatic	0	0.383340827357602	0.396551655845185
9	94719947	94742494	2	neutral	AA	100	somatic	0	0.310428156849127	0.183633278186208
9	94816577	94823019	2	neutral	AA	100	somatic	0	0.143331471666809	0.296580128786006
9	96559138	96562359	2	neutral	AA	100	somatic	0	0.333760159193732	0.578655300441159
9	99300209	99390397	2	neutral	AA	78.0468	somatic	0	0.105284411553834	0.0971779821326981
9	103464962	103468183	1	loss	A	-1	somatic	0	0.0916566747097118	0.284318955358624
9	104428041	104431262	2	neutral	AA	100	somatic	0	0.605391768848092	0.79339037591685
9	110261272	110267714	0	loss	-	-1	germline	1	0.0143069952641031	0.0366340426709927
9	112390353	112393574	2	neutral	AA	100	somatic	0	0.125829645849156	0.337562161297972
9	117524627	117543953	2	neutral	AA	100	somatic	0	0.64305261862369	0.644160874321747
9	120922782	120996865	2	neutral	AA	100	somatic	0	0.793077779617961	0.266978736586916
9	121132147	121135368	2	neutral	AA	100	somatic	0	0.559722250698324	0.763102606114323
9	121953502	121959944	2	neutral	AA	100	somatic	0	0.804653166183971	0.961593266772946
9	123634864	123676737	2	neutral	AA	37.4816	somatic	0	0.334067602114177	0.622359891401827
9	127876921	127883363	2	neutral	AA	54.5683	somatic	0	0.27987706630286	0.685035045290844
9	128649961	128653182	1	loss	A	-1	somatic	0	0.0835046896698797	0.270453635485116
9	128672508	128675729	2	neutral	AA	100	somatic	0	0.793579189818838	0.894927827666634
9	129423001	129445548	3	gain	AAB	0.637243	germline	1	5.41745607245435e-06	2.11757424428693e-06
9	129445548	129448769	2	neutral	AA	49.5686	somatic	0	0.39206009891775	0.632102431637519
9	129986676	130083306	2	neutral	AA	20.9628	somatic	0	3.75029821053118e-05	0.000154275215318966
9	133925959	133935622	2	neutral	AA	18.3232	germline	1	0.280279639602033	0.492383505638525
9	135414061	135417282	3	gain	AAB	41.1127	germline	1	0.0832975561827285	0.270094124680979
9	136161333	136167775	1	loss	A	-1	germline	1	0.02267300685494	0.056073554175202
9	137327335	137330556	3	gain	AAB	2.05566	germline	1	0.0832983429735627	0.270095490981283
9	137356324	137362766	1	loss	A	-1	germline	1	0.0214227906382139	0.0557714278824285
9	137691308	137833032	2	neutral	AA	22.735	somatic	0	0.0756050843624262	0.0533297359387118
10	5846115	5852557	1	loss	A	-1	somatic	0	0.0291435767727912	0.0560914018740016
10	14384986	14439743	2	neutral	AA	21.1095	somatic	0	0.0633971535979317	0.241264671971886
10	14955103	15016302	2	neutral	AA	31.5161	somatic	0	0.250274958789958	0.505922811057157
10	18511087	18707568	2	neutral	AA	68.2259	somatic	0	0.925351701404753	0.271567610697565
10	26570029	26624786	2	neutral	AA	2.63873	germline	1	0.822632801331428	0.736745490603573
10	26624786	26628007	3	gain	AAB	1.24163	somatic	0	0.0832951958463452	0.270090025810337
10	26634449	26653775	2	neutral	AA	3.56134	germline	1	0.00909715682346423	0.020438961829724
10	26937223	26940444	5	gain	AAAAA	1.28918	germline	1	0.0832818216301879	0.270066799734326
10	38484508	38487729	3	gain	AAB	6.90073	germline	1	0.0833447742891651	0.270176111628854
10	38487729	38490950	4	gain	AAAB	3.71748	germline	1	0.0832873284496857	0.270076363236113
10	38490950	38526381	3	gain	AAB	0.742751	germline	1	1.11361413957673e-08	1.02747865771136e-09
10	38526381	38529602	22	gain	AAAAAAAAAAAAAAAAAAAAAA	2.54848	germline	1	0.0832653029413316	0.27003811071214
10	38574696	38581138	4	gain	AAAB	6.85409	germline	1	0.0143279826572665	0.0366890212841668
10	38581138	38835597	3	gain	AAB	0.411797	germline	1	1.14447791536509e-13	3.11972669919669e-14
10	39257548	39267211	1	loss	A	-1	germline	1	0.00410652289360966	0.00849150612631944
10	39338073	39360620	1	loss	A	-1	germline	1	0.000120129044341807	5.05591172639264e-05
10	41856895	41898768	27	gain	AAAAAAAAAAAAAAAAAABBBBBBBBB	14.6469	germline	1	0.000107518150663411	9.08056497562759e-05
10	42301393	42320719	3	gain	AAA	1.39343	germline	1	2.22321154953837e-05	1.2398346306508e-05
10	42362592	42365813	2	neutral	AA	54.5678	somatic	0	0.714741117171156	0.856970255684192
10	42381918	42900499	2	neutral	AA	18.6579	somatic	0	0.0179268893701097	0.0675334918690096
10	44330623	44820215	2	neutral	AA	35.4273	somatic	0	0.0683277844345423	0.143152248769351
10	46514461	46559555	4	gain	AAAB	4.42124	germline	1	1.97872321550501e-09	7.56831264325797e-11
10	50795170	50814496	2	neutral	AA	100	somatic	0	0.100730701472932	0.0828444718390619
10	58312984	58322647	2	neutral	AA	54.5687	germline	1	0.742236566488947	0.888864119920174
10	67724746	67731188	1	loss	A	-1	germline	1	0.0221075134808538	0.0581996216583582
10	69080787	69219290	2	neutral	AA	53.2774	somatic	0	0.00322318659805245	0.00379518329544259
10	76299048	76321595	2	neutral	AA	100	somatic	0	0.356268300481868	0.287259030785293
10	76495529	76501971	0	loss	-	-1	germline	1	0.014307491693635	0.0366355377331212
10	83642928	83655812	2	neutral	AA	100	somatic	0	0.37385632060456	0.187644549585593
10	91937003	92114158	2	neutral	AA	42.1376	somatic	0	0.149846063556363	0.303589271307387
10	99631972	99793022	2	neutral	AA	54.5969	germline	1	0.160468344379223	0.306425961485169
10	103249155	103252376	3	gain	AAA	100	somatic	0	0.0833180147009862	0.270129650128491
10	106270453	106273674	1	loss	A	-1	germline	1	0.0832975561827285	0.270094124680968
10	112351701	112361364	1	loss	A	16.5886	somatic	0	0.00786299307156405	0.0104401643197337
10	116687167	116709714	2	neutral	AA	54.5784	germline	1	0.24097626458846	0.269954498695913
10	128463143	128466364	8	gain	AAAABBBB	100	germline	1	0.0832708088760214	0.270047673472341
10	131622944	131626165	1	loss	A	-1	somatic	0	0.0838110320943661	0.270984653735031
10	131668038	131674480	2	neutral	AA	54.8463	somatic	0	0.484267018944326	0.661486993626646
11	4947456	4953898	1	loss	A	-1	germline	1	0.023607929511788	0.0546255082029148
11	18076252	18079473	1	loss	A	-1	germline	1	0.0832715954621953	0.270049039601109
11	28985779	28992221	1	loss	A	-1	germline	1	0.0249570362099656	0.0546233933263532
11	36307112	36310333	3	gain	-	-1	germline	1	0.0833219494980101	0.270136482336307
11	55185393	55214382	1	loss	A	-1	germline	1	1.98475042255684e-05	6.29416689967854e-06
11	57320916	57356347	2	neutral	AA	72.3059	germline	1	0.85298628409897	0.877802115984679
11	62297361	62329571	2	neutral	AA	9.73144	somatic	0	0.0082492618609539	0.0014237344154473
11	68887527	68964831	2	neutral	AA	11.6806	somatic	0	0.201627374587273	0.163553775645188
11	73628839	73661049	2	neutral	AA	12.0393	somatic	0	0.318389944350214	0.253238865938294
11	77175160	77294337	2	neutral	AA	39.7527	somatic	0	0.901830277792642	0.876831247263985
11	93286602	93296265	1	loss	A	-1	germline	1	0.00478854520825638	0.00806203506326741
11	93950128	93956570	1	loss	A	-1	germline	1	0.0221077860471001	0.0568197175221057
11	98797733	98807396	2	neutral	AA	100	germline	1	0.781952170891847	0.723564120705088
11	100643366	100698123	2	neutral	AA	36.3786	somatic	0	0.828105318207036	0.749306496474634
11	101084643	101268240	2	neutral	AA	20.4079	somatic	0	0.682736229968144	0.528118880110827
11	102730574	102733795	3	gain	AAB	4.76253	germline	1	0.0832999165732912	0.270098223597026
11	104395831	104402273	1	loss	A	-1	germline	1	0.0269076429976039	0.0554685597924017
11	107913163	107919605	1	loss	A	-1	somatic	0	0.0248454162394215	0.0567726969398511
11	114960711	114989700	2	neutral	AA	56.55	somatic	0	0.12112413761587	0.0992981862502816
11	117824180	117830622	2	neutral	AA	36.435	somatic	0	0.668571327044228	0.903911794882974
11	119569962	119598951	2	neutral	AA	100	somatic	0	0.383765220998953	0.606866172895894
11	120362328	120552367	2	neutral	AA	100	germline	1	0.699115745507689	0.402654992007776
11	124333821	124378915	2	neutral	AA	100	somatic	0	0.268797766981885	0.320206621921068
11	131262192	131268634	1	loss	A	-1	somatic	0	0.0297665936136315	0.0598290987325349
12	2254700	2257921	5	gain	-	-1	germline	1	0.0832818216301879	0.270066799734326
12	6132784	6139226	1	loss	A	-1	somatic	0	0.0156912116945936	0.0391140963120112
12	18095578	18098799	1	loss	A	-1	somatic	0	0.0832778883682697	0.270059968812955
12	33147311	33156974	1	loss	A	-1	somatic	0	0.0072159106640386	0.0100681333068613
12	37595512	37753341	2	neutral	AA	1.17844	germline	1	9.02267302064502e-20	0
12	39708488	39714930	1	loss	A	-1	somatic	0	0.0245307421204179	0.0685502407461696
12	40165870	40185196	2	neutral	AA	100	germline	1	0.76711475812872	0.424923043092075
12	40481528	40484749	3	gain	AAA	100	somatic	0	0.0832967693979142	0.27009275838572
12	46227792	46636859	2	neutral	AA	100	somatic	0	0.000227701595090606	0.00407049661698655
12	58757482	58770366	2	neutral	AA	100	somatic	0	0.598705631030074	0.89875192347042
12	59533743	59543406	2	neutral	AA	6.10391	somatic	0	0.196853238517016	0.416691328847597
12	64059248	64085016	2	neutral	AA	54.5679	germline	1	0.102915846001063	0.219449844877813
12	71035934	71300056	2	neutral	AA	100	somatic	0	0.0589119787877471	0.00717350134977979
12	71599609	71622156	2	neutral	AA	100	somatic	0	0.855018538949568	0.601284956043116
12	85011853	85018295	2	neutral	AA	100	somatic	0	0.149197262793488	0.246100357734761
12	87405056	87472697	2	neutral	AA	100	germline	1	0.179004065747477	0.0478085135310092
12	90091370	90094591	1	loss	A	-1	germline	1	0.0838134042614606	0.270988762506271
12	97235548	97251653	2	neutral	AA	100	germline	1	0.578886464681509	0.748895972779158
12	101690191	101699854	2	neutral	AA	54.7947	somatic	0	0.0698649327451801	0.0692097502892816
12	110386891	110396554	2	neutral	AA	32.9573	somatic	0	0.531235140472999	0.409561962754061
12	114062052	114065273	3	gain	AAB	5.18644	germline	1	0.0832967693979142	0.27009275838572
12	120117532	120130416	2	neutral	AA	54.6257	somatic	0	0.22744929944439	0.300404024266867
12	124230749	124237191	2	neutral	AA	9.45569	somatic	0	0.163138015381305	0.460958558983934
12	124317716	124340263	2	neutral	AA	16.2458	somatic	0	0.320211150909084	0.279063465648278
12	130479489	130498815	2	neutral	AA	55.7048	somatic	0	0.60146397283462	0.669732196883064
12	132209166	132270365	2	neutral	AA	3.75419	somatic	0	0.00628796036639578	0.0338148262100147
12	132386321	132402426	2	neutral	AA	86.0781	somatic	0	0.314898461281914	0.522612237560597
12	132933891	132943554	2	neutral	AA	36.4139	somatic	0	0.654886234552631	0.776433317322474
13	21374556	21377777	3	gain	-	-1	germline	1	0.0832944090795905	0.270088659530212
13	22018756	22025198	1	loss	A	-1	germline	1	0.0207205161536489	0.0562126790513331
13	37495661	37511766	1	loss	A	-1	germline	1	0.00032659546713291	0.000269462115582431
13	38481287	38487729	1	loss	A	-1	germline	1	0.0221373313729212	0.0560173388242658
13	45422542	45432205	1	loss	A	-1	germline	1	0.0061069708094145	0.0103860112353051
13	48959200	48962421	1	loss	A	-1	germline	1	0.0848153290220679	0.27271983985162
13	50495617	50502059	1	loss	A	-1	germline	1	0.0221770214995737	0.0556821384887709
13	63057517	63070401	3	gain	-	-1	germline	1	0.0005335957682541	0.000673517463216755
13	67525044	67528265	3	gain	-	-1	germline	1	0.083302277018034	0.270102322558477
13	71902383	71908825	1	loss	A	-1	germline	1	0.0203896644632011	0.0554267853610059
13	88323041	88348809	2	neutral	AA	55.0709	somatic	0	0.512419625765696	0.22741239634685
13	89495485	89498706	2	neutral	AA	54.5679	germline	1	0.962520074535122	0.95460310515686
13	90210547	90213768	1	loss	A	-1	germline	1	0.0841103535038151	0.271502716682201
13	90284630	90300735	2	neutral	AA	100	germline	1	0.175987900677478	0.0911780910946516
13	95509092	95534860	2	neutral	AA	54.8372	somatic	0	0.796632928729765	0.903805526254292
13	100160216	100266509	2	neutral	AA	53.7361	somatic	0	0.833722054694013	0.637418586895981
13	100620819	100624040	2	neutral	AA	100	germline	1	0.576060974676869	0.774167511059191
13	100788311	100807637	2	neutral	AA	36.3789	somatic	0	0.621540894886283	0.796217462360893
13	102563082	102566303	2	neutral	AA	100	germline	1	0.684591833539348	0.840650909542381
13	104154256	104167140	2	neutral	AA	100	somatic	0	0.810527456620602	0.819422807698585
13	104463472	104479577	2	neutral	AA	100	somatic	0	0.708696851574467	0.964473167173683
13	104795235	104801677	2	neutral	AA	100	somatic	0	0.467948676462343	0.723466682581244
13	105948353	105958016	2	neutral	AA	100	somatic	0	0.114702441778874	0.17291634971348
13	109021187	109024408	1	loss	A	-1	somatic	0	0.0969165035819685	0.292992491661683
13	113031332	113060321	2	neutral	AA	29.0474	somatic	0	0.865434069535209	0.768463818503663
13	113401747	113414631	2	neutral	AA	13.0907	somatic	0	0.0508772959612511	0.0657921236138937
14	0	16092116	3	gain	AAB	-1	germline	1	NA	NA
14	16092116	16095337	5	gain	-	-1	germline	1	0.0832818216301879	0.270066799734326
14	16095337	18488540	3	gain	AAB	-1	germline	1	NA	NA
14	18491761	18659253	3	gain	AAB	-1	germline	1	NA	NA
14	18659253	18662474	5	gain	AAABB	6.15411	germline	1	0.0832826083006294	0.270068165933732
14	18662474	18681800	3	gain	AAB	-1	germline	1	NA	NA
14	18681800	19957316	3	gain	AAB	0.437869	somatic	0	6.27066375751248e-26	0
14	23455322	23458543	2	neutral	AA	100	somatic	0	0.92577910211054	0.944106418712913
14	25420132	25484552	2	neutral	AA	72.1029	somatic	0	0.324399284622027	0.638016726728181
14	25700359	25771221	2	neutral	AA	36.3855	somatic	0	0.409995123632176	0.612970374316932
14	33179521	33182742	2	neutral	AA	100	somatic	0	0.803038267448708	0.89910423303965
14	37299180	37302401	1	loss	A	-1	somatic	0	0.0836751187223547	0.270749160144535
14	40143323	40149765	1	loss	A	-1	somatic	0	0.0232899760938788	0.0559617117797546
14	41141833	41193369	1	loss	A	-1	germline	1	8.44833900705153e-11	2.1032064978499e-12
14	44349949	44462684	3	gain	AAB	0.987531	germline	1	1.25575075380123e-24	0
14	51255773	51265436	2	neutral	AA	100	somatic	0	0.216377320309298	0.63795581493556
14	52251062	52260725	2	neutral	AA	100	somatic	0	0.951524766512942	0.940274145208926
14	53024102	53030544	2	neutral	AA	100	somatic	0	0.984063671863765	0.848204169710561
14	65811472	65821135	2	neutral	AA	100	somatic	0	0.600417280493646	0.466656596216217
14	66301064	66342937	2	neutral	AA	54.5679	somatic	0	0.111720200258864	0.188895357272444
14	69731429	69734650	2	neutral	AA	100	somatic	0	0.773895549615001	0.886054724120865
14	70903873	71122901	2	neutral	AA	33.8884	somatic	0	0.602408477351684	0.649175649155549
14	73860751	73863972	2	neutral	AA	100	somatic	0	0.534520496740901	0.74536945569904
14	74430868	74450194	2	neutral	AA	27.2887	somatic	0	0.380531153130935	0.3898982516752
14	74688548	74707874	2	neutral	AA	36.3786	somatic	0	0.447300998782232	0.697531238301115
14	75168477	75191024	2	neutral	AA	54.5678	somatic	0	0.77564007544427	0.97329793411453
14	76853060	76859502	2	neutral	AA	36.3787	somatic	0	0.375390396495829	0.332271034088021
14	78988583	79033677	2	neutral	AA	54.5678	somatic	0	0.830642060579815	0.796062655278565
14	79639225	79648888	1	loss	A	-1	germline	1	0.00531212105248474	0.00786010706320128
14	84441736	84451399	2	neutral	AA	100	somatic	0	0.353206360907722	0.343678849441973
14	84509377	84525482	2	neutral	AA	36.4811	germline	1	0.500072057671616	0.705654207936149
14	84831477	84834698	1	loss	A	-1	somatic	0	0.0913409493179458	0.283793216526161
14	99925083	99928304	5	gain	AAABB	6.32428	somatic	0	0.0832802483073629	0.270064067350647
14	101722401	101725622	1	loss	A	-1	somatic	0	0.0857922646808873	0.274399514802891
15	20340615	20343836	17	gain	AAAAAAAAAAABBBBBB	35.8695	germline	1	0.0832653029413316	0.27003811071214
15	22247447	22250668	6	gain	AAABBB	20.5221	germline	1	0.0832794616549793	0.270062701166375
15	25526425	25529646	4	gain	AAAA	100	germline	1	0.0832936223188556	0.270087293255133
15	34435711	34519457	1	loss	A	-1	germline	1	5.54251848992145e-16	0
15	42063039	42121017	2	neutral	AA	100	somatic	0	0.100190122590328	0.0801729513056496
15	56270870	56341732	2	neutral	AA	54.5693	somatic	0	0.463306988619621	0.147112563522203
15	65521582	65528024	1	loss	A	-1	germline	1	0.0203864470824052	0.055430533242533
15	66629606	66655374	2	neutral	AA	100	somatic	0	0.157945784206302	0.112760156684987
15	72092422	72095643	1	loss	A	-1	somatic	0	0.0832833949770903	0.270069532138173
15	83971470	83981133	2	neutral	AA	100	somatic	0	0.872125644346825	0.870129757000932
16	186818	190039	2	neutral	AA	45.7623	somatic	0	0.126200356136084	0.338094493332254
16	843902	847123	4	gain	AABB	15.9752	germline	1	0.0832904753361134	0.270081828205264
16	1024278	1027499	5	gain	AAABB	9.69409	germline	1	0.0832826083006294	0.270068165933732
16	1726456	1761887	2	neutral	AA	36.3851	somatic	0	0.900879791000852	0.430248561257841
16	3881305	3890968	2	neutral	AA	36.5733	somatic	0	0.940771604738946	0.961922553930335
16	9495508	9498729	2	neutral	AA	100	somatic	0	0.875786064088481	0.927672505789893
16	10178360	10191244	2	neutral	AA	54.5678	somatic	0	0.218542690754457	0.327664992564324
16	11289605	11325036	2	neutral	AA	36.3786	somatic	0	0.156755596816951	0.189307065504539
16	11943468	11969236	2	neutral	AA	61.8081	somatic	0	0.0790950948788445	0.211048981053556
16	12052982	12056203	2	neutral	AA	100	somatic	0	0.395064534830258	0.634782116566115
16	12416955	12423397	2	neutral	AA	100	somatic	0	0.170568910962219	0.427026582742
16	19934769	19954095	1	loss	A	-1	germline	1	6.95293658624167e-05	3.3876986860859e-05
16	21558153	21583921	4	gain	AABB	4.55989	germline	1	9.65507184157113e-07	2.25474856452301e-07
16	21619352	21715982	2	neutral	AA	49.904	somatic	0	0.319509116775287	0.0890384475305348
16	22614641	22685503	4	gain	AAAB	4.40439	germline	1	2.07869371412969e-15	0
16	22685503	22698387	4	gain	AABB	3.20718	germline	1	0.000532532182382915	0.000671418287307435
16	23490753	23497195	2	neutral	AA	100	somatic	0	0.99688930095924	0.99800516211067
16	23510079	23542289	2	neutral	AA	100	somatic	0	0.150808309079457	0.351111297114507
16	24608440	24627766	2	neutral	AA	92.361	somatic	0	0.302262415610071	0.482632626567916
16	28174087	28248170	2	neutral	AA	54.5679	somatic	0	0.0285092079344532	0.0797776653501174
16	31330667	31372540	2	neutral	AA	66.2741	somatic	0	0.435538518971398	0.477671116110908
16	34062075	34065296	27	gain	AAAAAAAAAAAAAAAAAABBBBBBBBB	16.7039	germline	1	0.0832653029413316	0.27003811071214
16	34068517	34084622	3	gain	AAB	48.9754	somatic	0	0.000551304467270482	0.000722737382278016
16	34084622	34087843	15	gain	AAAAAAAAAABBBBB	100	germline	1	0.0832653029413316	0.27003811071214
16	34094285	34100727	7	gain	AAAAABB	1.96455	germline	1	0.0143094775637152	0.0366366590647536
16	34190915	34213462	3	gain	AAB	1.16198	somatic	0	0.000580285216905701	0.000829862549341476
16	34596761	35086353	2	neutral	AA	3.8255	somatic	0	3.15854336547954e-24	0
16	35086353	35089574	2	neutral	AA	57.8237	somatic	0	0.179849022745336	0.410690282349979
16	35253845	35434221	1	loss	A	-1	germline	1	7.39753137498638e-32	0
16	35978570	36088084	2	neutral	AA	4.67228	germline	1	5.48974440235957e-11	7.52591555741589e-09
16	36123515	36126736	5	gain	-	-1	germline	1	0.0832818216301879	0.270066799734326
16	46466146	46475809	2	neutral	AA	100	somatic	0	0.00800250648914426	0.017638864255457
16	46994390	47029821	2	neutral	AA	50.279	somatic	0	0.849799129348781	0.974925464308691
16	50576142	50592247	2	neutral	AA	32.9503	somatic	0	0.551688085216784	0.502810433731099
16	50717866	50724308	2	neutral	AA	100	somatic	0	0.168809657592593	0.432100320822681
16	55272360	55278802	2	neutral	AA	100	somatic	0	0.809993033002752	0.845301297783472
16	55765173	55768394	1	loss	A	-1	germline	1	0.0941550923321347	0.288465493789452
16	56570423	56667053	2	neutral	AA	35.4322	somatic	0	0.0662229177103161	0.111274000123512
16	58052083	58055304	2	neutral	AA	100	somatic	0	0.59835739459713	0.788827988245234
16	58638305	58644747	1	loss	A	-1	germline	1	0.014759210690948	0.0379793918006217
16	64065690	64068911	2	neutral	AA	100	somatic	0	0.323906582417224	0.569123608165849
16	65805030	65856566	2	neutral	AA	100	somatic	0	0.796550889320954	0.573818556591271
16	70150159	70163043	3	gain	AAB	2.74158	germline	1	0.000533105310168601	0.00067213104368391
16	71696239	71699460	2	neutral	AA	100	somatic	0	0.742658681472008	0.871134926628185
16	73606292	73612734	2	neutral	AA	54.5678	somatic	0	0.338195530094612	0.654049378608523
16	76505192	76511634	1	loss	A	-1	somatic	0	0.022570862340562	0.0573308885308923
16	83546298	83562403	2	neutral	AA	54.5678	somatic	0	0.0582906621786245	0.0660564962242334
16	85424141	85433804	2	neutral	AA	54.8597	somatic	0	0.12320232285971	0.119253557813195
16	88577500	88580721	2	neutral	AA	100	somatic	0	0.143188191005003	0.362271522946467
16	89041324	89047766	2	neutral	AA	7.973	somatic	0	0.0350029359063945	0.0994745154579612
16	89614662	89637209	2	neutral	AA	5.84087	somatic	0	0.928408101538501	0.291957684743068
17	818134	821355	1	loss	A	-1	somatic	0	0.123217004853056	0.333715201145502
17	840681	843902	3	gain	AAB	14.2258	somatic	0	0.0832944090795905	0.270088659530212
17	7765831	7772273	2	neutral	AA	100	germline	1	0.175122499289582	0.352211509444173
17	10213791	10246001	2	neutral	AA	34.3159	somatic	0	0.635455303118705	0.481038818795059
17	11727661	11734103	2	neutral	AA	36.3786	somatic	0	0.580545436205612	0.589058277940469
17	14546036	14549257	2	neutral	AA	100	somatic	0	0.636935130462706	0.812995191731672
17	15087164	15112932	2	neutral	AA	36.7315	somatic	0	0.778044952661587	0.729097498819668
17	19628774	19644879	2	neutral	AA	13.6516	somatic	0	0.174889666173195	0.293708116464327
17	21290810	21303694	4	gain	AABB	0.200628	germline	1	0.00053254967396679	0.000671418287307435
17	21854485	21857706	6	gain	-	-1	germline	1	0.0832802483073629	0.270064067350647
17	21857706	21967220	3	gain	-	-1	somatic	0	8.62118346185093e-24	0
17	21967220	21983325	15	gain	-	-1	germline	1	0.00269987517187001	0.00495761808472184
17	21986546	21989767	6	gain	-	-1	germline	1	0.0832771017339436	0.270058602643828
17	22125049	22154038	4	gain	AABB	0.495606	germline	1	2.03852104045282e-07	3.05236553810317e-08
17	22157259	22160480	3	gain	AAB	2.77557	germline	1	0.0833069980700637	0.270110520617592
17	22160480	22215237	2	neutral	AA	100	somatic	0	0.133155910208354	0.0975776910821694
17	26782615	26792278	4	gain	-	-1	germline	1	0.00270206907769146	0.00496019835250538
17	26792278	26805162	3	gain	-	-1	germline	1	0.000534731563377222	0.000674287325955425
17	26808383	26827709	4	gain	-	-1	germline	1	0.000107661240245679	9.08937046115721e-05
17	26827709	26843814	3	gain	-	-1	germline	1	0.000107898955753241	9.12723346677691e-05
17	26843814	26847035	1	loss	A	-1	germline	1	0.123263755049118	0.333783382226872
17	26847035	26866361	3	gain	-	-1	germline	1	2.35249399284241e-05	1.53887321786561e-05
17	26866361	26869582	7	gain	-	-1	germline	1	0.0832763151056367	0.270057236479735
17	26869582	26876024	3	gain	-	-1	germline	1	0.0143210252482869	0.0366602139666823
17	26876024	26879245	4	gain	-	-1	germline	1	0.0832833949770903	0.270069532138184
17	26937223	26940444	20	gain	AAAAAAAAAAAAABBBBBBB	57.397	germline	1	0.0832653029413316	0.27003811071214
17	27014527	27465467	2	neutral	AA	10.2104	germline	1	0.0422857958752115	0.207724895327755
17	32280862	32448354	2	neutral	AA	34.6786	somatic	0	0.000785127138935637	0.000206442711855992
17	39238222	39247885	2	neutral	AA	54.595	somatic	0	0.248358186584012	0.411165115964606
17	39489460	39518449	2	neutral	AA	100	somatic	0	0.149950114250733	0.0849655872977174
17	40384898	40388119	2	neutral	AA	100	somatic	0	0.295252076324738	0.54065589262544
17	44285529	44291971	2	neutral	AA	54.5693	somatic	0	0.242300326205025	0.344800801692618
17	48372978	48376199	2	neutral	AA	100	somatic	0	0.451889309066108	0.682550549206927
17	53990402	53996844	2	neutral	AA	100	somatic	0	0.30645520096001	0.620579898468547
17	57955453	58077851	2	neutral	AA	26.8168	somatic	0	0.713554797357952	0.942382786347862
17	61946272	61952714	2	neutral	AA	100	somatic	0	0.362974305312796	0.623734852479802
17	64990117	65009443	2	neutral	AA	100	somatic	0	0.0831821379404018	0.149589931348572
17	73409811	73413032	2	neutral	AA	100	somatic	0	0.200496743044711	0.436127732757762
17	74215061	74302028	2	neutral	AA	20.5507	somatic	0	0.881352056406025	0.916358928145931
17	75191024	75194245	2	neutral	AA	100	somatic	0	0.134919719322923	0.350656655915392
17	77355536	77400630	2	neutral	AA	15.6648	somatic	0	0.570250382481365	0.436345548714333
17	78106029	78128576	2	neutral	AA	49.059	somatic	0	0.675600715860849	0.751098984617113
17	81417217	81452648	2	neutral	AA	16.8347	somatic	0	0.588419290271775	0.87988271582885
17	82583219	82586440	4	gain	AABB	17.8955	germline	1	0.0832928355641405	0.270085926985098
17	83188767	83201651	2	neutral	AA	35.0701	somatic	0	0.0038028691851211	0.0123350069373295
18	5304987	5308208	1	loss	A	-1	germline	1	0.0940101510290091	0.288226285450386
18	36722621	36729063	1	loss	A	-1	somatic	0	0.0283440341191948	0.0552055123573433
18	40681230	40687672	1	loss	A	-1	germline	1	0.0215725536831105	0.0557805789249143
18	41283557	41289999	1	loss	A	-1	germline	1	0.0151019062353676	0.0389663192772453
18	42472106	42478548	1	loss	A	-1	somatic	0	0.0291940418830049	0.0572196449178042
18	50782286	50785507	2	neutral	AA	100	somatic	0	0.375858016631337	0.617695921403111
18	51449033	51452254	1	loss	A	-1	somatic	0	0.094734031860275	0.28941800055703
18	52792190	52795411	3	gain	AAB	59.5494	somatic	0	0.0833266714531283	0.270144681152172
18	52924251	52927472	1	loss	A	-1	somatic	0	0.124078455119033	0.334983632923947
18	54608834	54782768	2	neutral	AA	63.4046	somatic	0	0.502862342668107	0.0427337919349141
18	57279043	57282264	1	loss	A	-1	germline	1	0.0833762650699248	0.270230779684336
18	62036460	62062228	2	neutral	AA	12.691	somatic	0	0.791240148256749	0.674057505749659
18	63218567	63225009	3	gain	AAB	100	somatic	0	0.0166628148144106	0.0437781123777241
18	63225009	63247556	2	neutral	AA	100	somatic	0	0.463765803897471	0.818906726532453
18	65325101	65328322	2	neutral	AA	100	somatic	0	0.934072995760239	0.94660202372538
18	65534466	65540908	3	gain	AAB	10.3536	germline	1	0.0143165542020583	0.0366501173867565
18	65801809	65830798	2	neutral	AA	54.5687	germline	1	0.116421584220599	0.116233751074597
18	66033721	66043384	2	neutral	AA	100	somatic	0	0.116562942892682	0.319362686935271
18	66098141	66101362	1	loss	A	-1	somatic	0	0.0837284355268735	0.270842244415241
18	68375388	68401156	2	neutral	AA	54.6848	somatic	0	0.595685868200613	0.542890193228053
18	69080787	69090450	1	loss	A	-1	germline	1	0.00519039122017423	0.00921514874713869
18	71045597	71100354	2	neutral	AA	58.1544	somatic	0	0.174582950158337	0.311989718943561
18	71412791	71419233	2	neutral	AA	100	somatic	0	0.835957909882942	0.857169919068733
18	71892720	71895941	2	neutral	AA	100	germline	1	0.399375357209281	0.638528986912459
18	73271308	73274529	2	neutral	AA	100	germline	1	0.256562544365949	0.500098915253084
18	74614465	74617686	3	gain	-	-1	germline	1	0.0832983429735627	0.270095490981283
18	74617686	74807725	2	neutral	AA	50.6781	somatic	0	0.0235467999628108	0.111321760177838
18	75593649	75661290	2	neutral	AA	100	somatic	0	0.0120339347712696	0.00969495058580605
18	76179871	76183092	2	neutral	AA	100	germline	1	0.754920204866863	0.877156505227652
18	77954642	77986852	2	neutral	AA	18.5201	somatic	0	0.0200499555668382	0.0305286045047093
18	79197948	79201169	4	gain	AAAB	22.8871	germline	1	0.0832841816595705	0.27007089834768
18	79520048	79523269	1	loss	A	-1	somatic	0	0.097249810516516	0.293536148114116
19	550791	557233	2	neutral	AA	36.8729	somatic	0	0.084103877158783	0.16947249053053
19	1855296	1868180	2	neutral	AA	100	germline	1	0.172730769268141	0.380810239826164
19	7450173	7453394	10	gain	AAAAAABBBB	15.4648	germline	1	0.0832660894853738	0.270039476805606
19	8880297	8909286	2	neutral	AA	4.67954	germline	1	0.125973819590883	0.0806013013562289
19	23378018	23474648	2	neutral	AA	2.74031	somatic	0	0.634878321581668	0.71501499440202
19	24331434	24350760	3	gain	AAB	1.16359	germline	1	2.21406327001418e-05	1.23098819222456e-05
19	24350760	24370086	4	gain	AABB	1.2908	germline	1	2.21175068922892e-05	1.23004664449589e-05
19	24370086	24389412	5	gain	AAABB	2.7956	germline	1	2.211288449044e-05	1.22974549501276e-05
19	27336627	27339848	4	gain	AAAB	12.5208	germline	1	0.0832833949770903	0.270069532138184
19	27339848	27346290	3	gain	AAB	2.77789	germline	1	0.0143412845692923	0.03669987592627
19	27346290	27378500	6	gain	AAAABB	0.170718	germline	1	9.64479420238698e-07	2.25272514975394e-07
19	27378500	27381721	5	gain	AAABB	8.4366	germline	1	0.0832826083006294	0.270068165933732
19	27381721	27388163	6	gain	AAAABB	0.537096	germline	1	0.0143103464583308	0.0366385280175341
19	27388163	27391384	5	gain	AAABB	2.03376	germline	1	0.0832826083006294	0.270068165933732
19	27391384	27397826	6	gain	AAAABB	0.53927	germline	1	0.0143100981979774	0.0366381542203047
19	27397826	27401047	4	gain	AAAB	3.08777	germline	1	0.0832881151622633	0.270077729470833
19	28515513	28615364	2	neutral	AA	4.5037	somatic	0	0.00796771687510696	0.0848241859700795
19	29894101	29942416	2	neutral	AA	23.7255	somatic	0	0.029398735943467	0.126065514076922
19	30795981	30799202	1	loss	A	-1	somatic	0	0.0832755284833489	0.270055870320677
19	34306871	34406722	2	neutral	AA	48.4051	somatic	0	0.997096661879289	0.998140789750399
19	36348985	36355427	1	loss	A	-1	somatic	0	0.0200028128065252	0.049927321608117
19	45557824	45561045	2	neutral	AA	100	somatic	0	0.316080326031766	0.561496750962143
19	48459945	48479271	2	neutral	AA	54.5678	somatic	0	0.823313580234104	0.988014368882287
19	53017660	53046649	3	gain	AAB	2.16431	germline	1	9.66881737675155e-07	2.25880067872275e-07
19	56976269	56982711	2	neutral	AA	100	somatic	0	0.921804576180522	0.901974161667287
19	58325868	58351636	2	neutral	AA	100	somatic	0	0.161372721779245	0.325236117653827
20	64420	67641	8	gain	-	-1	germline	1	0.0832708088760214	0.270047673472341
20	399404	421951	2	neutral	AA	36.3786	somatic	0	0.283777993351191	0.381299641327782
20	1581511	1613721	1	loss	A	-1	germline	1	5.02129041351403e-06	1.24161863568339e-06
20	9060673	9118651	2	neutral	AA	30.532	somatic	0	0.515829490619392	0.781184659161085
20	11550506	11573053	2	neutral	AA	100	somatic	0	0.477125628546801	0.624349566369615
20	11866164	11869385	2	neutral	AA	100	somatic	0	0.823337884989372	0.907613039554511
20	13811648	13830974	2	neutral	AA	54.5678	germline	1	0.118034002366668	0.168135899245516
20	13876068	13956593	2	neutral	AA	32.4476	germline	1	0.921052266456752	0.900743293024594
20	18340374	18346816	2	neutral	AA	54.5765	somatic	0	0.621926259352682	0.468848786190614
20	23130001	23133222	2	neutral	AA	100	somatic	0	0.111310784971425	0.315789128240842
20	28779635	28789298	6	gain	-	-1	germline	1	0.0143100981979774	0.0366385280175341
20	28802182	28805403	5	gain	-	-1	germline	1	0.0832818216301879	0.270066799734326
20	28805403	28873044	8	gain	-	-1	germline	1	4.59512713697965e-06	1.66451303851289e-06
20	28873044	29262785	3	gain	-	-1	germline	1	0.000704691790422772	0.00505900155550532
20	29262785	29266006	9	gain	-	-1	germline	1	0.0832700222958665	0.270046307348607
20	29266006	29407730	3	gain	-	-1	germline	1	4.29127016338949e-10	1.08222319994411e-11
20	29407730	29410951	6	gain	-	-1	germline	1	0.0832794616549793	0.270062701166375
20	29410951	29858670	3	gain	-	-1	somatic	0	3.28381876160745e-10	1.56143442620049e-09
20	29890880	29894101	6	gain	-	-1	germline	1	0.0832763151056367	0.270057236479735
20	30280621	30283842	3	gain	AAB	61.5472	somatic	0	0.0832959826191198	0.270091392095506
20	30976357	30979578	4	gain	-	-1	somatic	0	0.0832881151622633	0.270077729470833
20	30979578	30998904	3	gain	-	-1	somatic	0	0.00306111717573891	0.00619937390236547
20	31066545	31069766	54	gain	-	-1	germline	1	0.0832653029413316	0.27003811071214
20	31163175	31166396	3	gain	-	-1	germline	1	0.0834952296383538	0.270437224351694
20	31166396	31169617	5	gain	-	-1	germline	1	0.0832818216301879	0.270066799734326
20	31169617	31182501	3	gain	-	-1	germline	1	0.000536027973585401	0.000679256175421306
20	31182501	31188943	15	gain	-	-1	germline	1	0.0143061265489838	0.0366314264407207
20	31188943	31192164	5	gain	-	-1	germline	1	0.0832826083006294	0.270068165933732
20	31227595	31240479	3	gain	AAB	2.04383	germline	1	0.000533372382547727	0.000673435026814939
20	31240479	31243700	50	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBBB	100	germline	1	0.0832653029413316	0.27003811071214
20	43641329	43647771	1	loss	A	-1	germline	1	0.0264108507823046	0.05323303762287
20	44868530	44874972	2	neutral	AA	100	somatic	0	0.161396127284453	0.193089648269785
20	47493645	47651474	2	neutral	AA	56.8952	somatic	0	0.00351707931289611	0.0165132918442811
20	51236447	51268657	2	neutral	AA	18.19	somatic	0	0.195871877977259	0.500120248240963
20	62100880	62107322	2	neutral	AA	41.5727	somatic	0	0.111827816689222	0.181355459138092
21	7917218	7923660	5	gain	-	-1	germline	1	0.0143112153994876	0.0366396494292422
21	8989811	8996253	9	gain	AAAAAABBB	1.77488	germline	1	0.0143073675848275	0.0366336689138046
21	10655068	10661510	7	gain	AAAAABB	57.9656	germline	1	0.0143088569531974	0.0366366590647536
21	10661510	10690499	5	gain	AAABB	1.50831	germline	1	2.03785944269417e-07	3.049704133673e-08
21	10690499	10693720	47	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBB	100	germline	1	0.0832653029413316	0.27003811071214
21	10693720	10700162	5	gain	AAABB	4.89003	germline	1	0.0143114636769382	0.0366396494292422
21	10700162	10738814	6	gain	AAAABB	0.777062	germline	1	1.97687478682858e-09	7.56276152813484e-11
21	10751698	10754919	12	gain	AAAAAAAABBBB	2.8709	germline	1	0.0832653029413316	0.27003811071214
21	18707568	18710789	2	neutral	AA	54.5678	germline	1	0.545079723176247	0.752889818418923
21	31839585	31846027	2	neutral	AA	100	somatic	0	0.10373181979353	0.152995169196597
21	43335334	43338555	3	gain	AAB	10.4298	germline	1	0.0832951958463452	0.270090025810337
21	46082847	46140825	2	neutral	AA	80.6654	somatic	0	0.0125285226140021	0.0100068880587446
22	10725930	10729151	11	gain	-	-1	germline	1	0.0832653029413316	0.27003811071214
22	11212301	11215522	3	gain	-	-1	somatic	0	0.0833069980700637	0.270110520617592
22	11627810	11631031	4	gain	-	-1	germline	1	0.0832865417431277	0.270074997006437
22	16559161	16568824	2	neutral	AA	26.6008	germline	1	0.129832003016138	0.223475521947193
22	17290328	17293549	1	loss	A	-1	somatic	0	0.0892400930090992	0.280264505140456
22	17876550	17879771	3	gain	AAA	9.20077	germline	1	0.0833258844455562	0.270143314670248
22	19934769	19944432	2	neutral	AA	27.2839	somatic	0	0.556507296557733	0.48239376501822
22	20237543	20382488	2	neutral	AA	9.56852	somatic	0	0.142169926291034	0.299839004286963
22	21451860	21455081	2	neutral	AA	100	somatic	0	0.175616240178633	0.405314264551673
22	25903282	25906503	2	neutral	AA	100	somatic	0	0.0931563106361324	0.286819697295926
22	27542771	27545992	2	neutral	AA	100	somatic	0	0.535091799157268	0.745801646253724
22	29117840	29121061	4	gain	AABB	18.3176	germline	1	0.0832889018808604	0.270079095710599
22	29636421	29665410	2	neutral	AA	100	somatic	0	0.0565574783646231	0.013810480127621
22	33070007	33082891	3	gain	AAB	100	germline	1	0.000533210372953703	0.000671939077988459
22	34467921	34471142	1	loss	A	-1	germline	1	0.108526927875357	0.311471795031715
22	35247403	35250624	1	loss	A	-1	somatic	0	0.112470891969408	0.31756068858635
22	35437442	35466431	2	neutral	AA	23.6542	germline	1	0.950939044430637	0.680036817314347
22	36745168	36751610	1	loss	A	-1	germline	1	0.0210577800886109	0.0562913045168772
22	37347495	37353937	1	loss	A	-1	germline	1	0.0216471073541426	0.0553636395938646
22	37576186	37579407	2	neutral	AA	100	somatic	0	0.256580138965592	0.500114960483824
22	37737236	37746899	2	neutral	AA	54.5686	somatic	0	0.47887382238476	0.539477587470394
22	38278364	38281585	2	neutral	AA	54.5678	somatic	0	0.353493955877172	0.597235075749246
22	38639116	38652000	2	neutral	AA	100	somatic	0	0.802848996366764	0.871105028374054
22	38861365	38867807	2	neutral	AA	36.3791	germline	1	0.119339658464122	0.163342834294831
22	39083614	39086835	2	neutral	AA	100	somatic	0	0.598062865383127	0.788653382710369
22	41612099	41615320	2	neutral	AA	100	germline	1	0.34301631435371	0.587423689640853
22	43576909	43593014	2	neutral	AA	27.2847	somatic	0	0.932093286083221	0.95883172561978
22	44478789	44514220	2	neutral	AA	100	somatic	0	0.318228965907833	0.580584115841971
22	45325912	45329133	3	gain	AAB	23.2647	somatic	0	0.0832967693979142	0.27009275838572
22	48305337	48315000	2	neutral	AA	37.2414	germline	1	0.616189019107549	0.796055308815939
22	48791708	48794929	2	neutral	AA	22.1392	somatic	0	0.741458253774285	0.87053167515244
22	49500328	49506770	2	neutral	AA	54.5686	somatic	0	0.281467064297479	0.27332212389313
22	49993141	50044677	2	neutral	AA	12.3437	somatic	0	0.673026435565077	0.729843377149535
22	50640562	50647004	3	gain	AAB	8.91014	germline	1	0.0143247520609685	0.0366721834348244
X	3523774	3526995	2	gain	-	-1	germline	1	0.755729467485342	0.877518259648364
X	62513168	62516389	2	gain	AB	29.1021	somatic	0	0.393693485173061	0.633548536862397
X	75004206	75010648	0	loss	-	-1	germline	1	0.0143068711590943	0.0366336689138016
X	79664993	79671435	0	loss	-	-1	somatic	0	0.0143066229519256	0.0366329214094283
X	93544282	93547503	0	loss	-	-1	germline	1	0.0832668760354348	0.270040842904106
X	108773170	108776391	0	loss	-	-1	germline	1	0.0832653029413316	0.270038110712129
X	125271132	125280795	0	loss	-	-1	germline	1	0.014307491693635	0.0366355377331212
X	141382574	141385795	0	loss	-	-1	germline	1	0.0832653029413316	0.270038110712129
X	141788420	141794862	0	loss	-	-1	somatic	0	0.0143196589646139	0.0366721834348214
Y	10655068	10658289	8	gain	-	-1	germline	1	0.0832708088760214	0.270047673472341
Y	10754919	10764582	6	gain	-	-1	germline	1	0.00270111893919645	0.00495928752922525
Y	10764582	10793571	3	gain	-	-1	somatic	0	2.1803309503862e-06	2.56848969648615e-06
Y	10793571	10803234	5	gain	-	-1	germline	1	0.00270184282654415	0.00496095748903769
Y	10803234	10806455	2	gain	-	-1	germline	1	0.875143638698394	0.92740770291928
Y	10806455	10809676	5	gain	-	-1	germline	1	0.0832826083006294	0.270068165933732
Y	10812897	10886980	2	gain	-	-1	germline	1	0.0170388621173013	6.23102355419292e-05
Y	10886980	10896643	3	gain	-	-1	germline	1	0.0143202799883925	0.0366602139666823
Y	10919190	10935295	3	gain	-	-1	germline	1	0.0663246225939427	0.023005525503919
Y	10935295	10938516	5	gain	-	-1	germline	1	0.0832818216301879	0.270066799734326
Y	10938516	10954621	2	gain	-	-1	germline	1	0.0180080863620191	0.0583761775632653
Y	10973947	10980389	2	gain	-	-1	germline	1	0.995624344048628	0.817204331256452
Y	10980389	10986831	3	gain	-	-1	germline	1	0.0143163058467084	0.0366471262747813
Y	10986831	10990052	13	gain	-	-1	germline	1	0.0832653029413316	0.27003811071214
Y	10990052	11012599	2	gain	-	-1	germline	1	0.197617106074778	0.460825832299682
Y	11012599	11015820	19	gain	-	-1	germline	1	0.0832653029413316	0.27003811071214
Y	11015820	11041588	2	gain	AA	12.9467	germline	1	0.06479711514439	0.0107101313885681
Y	11292826	11315373	37	gain	AAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBB	7.98905	germline	1	2.20936935848527e-05	1.22921865343129e-05
Y	11315373	11334699	19	gain	AAAAAAAAAAAAABBBBBB	4.95584	germline	1	0.00270003344046049	0.0049581492157218
Y	11531180	11534401	33	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABB	74.37	germline	1	0.0832653029413316	0.27003811071214
Y	11685788	11689009	4	gain	AABB	37.5162	germline	1	0.0832920488154451	0.270084560720109
Y	11689009	11692230	7	gain	AAAAABB	100	germline	1	0.0832763151056367	0.270057236479735
Y	11692230	11705114	2	gain	AA	6.98858	somatic	0	0.00556902273990841	0.0169800733727462
Y	11708335	11721219	2	gain	AA	3.68692	germline	1	0.151603600906249	0.0444762869437079
Y	11721219	11724440	40	gain	AAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBB	100	germline	1	0.0832653029413316	0.27003811071214
Y	11724440	11743766	2	gain	AA	3.26566	germline	1	0.555420004234267	0.19036876351392
Y	11743766	11746987	4	gain	AAAB	4.67435	germline	1	0.0832928355641405	0.270085926985098
Y	11746987	11750208	9	gain	AAAAAABBB	2.83687	germline	1	0.083268449153613	0.270043575116272
Y	26637670	26640891	6	gain	AAAABB	11.3447	germline	1	0.0832771017339436	0.270058602643828
Y	56824882	56844208	19	gain	AAAAAAAAAAAAABBBBBB	13.9213	germline	1	2.20972462598355e-05	1.22948204718254e-05
