chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	6339284	6421996	2	neutral	AA	36.3991	somatic	0	0.171174217952739	0.112630871100308
1	7786744	7804468	2	neutral	AA	54.5678	somatic	0	0.0543665273967932	0.00909190192876852
1	8802920	8835414	2	neutral	AA	56.3591	somatic	0	0.0058037614447051	0.000905066642508667
1	16882110	16944144	4	gain	AABB	1.6787	germline	1	4.32726484939838e-08	4.13023437673132e-09
1	18311846	18317754	2	neutral	AA	100	somatic	0	0.1202766600511	0.193672030592638
1	31430560	31433514	5	gain	AAAAA	10.1923	germline	1	0.0832739089115642	0.270053113088523
1	39184810	39193672	2	neutral	AA	100	somatic	0	0.306412901375499	0.235160437378673
1	46073538	46188744	2	neutral	AA	36.3791	somatic	0	0.811450331950599	0.979022193565448
1	47500320	47512136	2	neutral	AA	100	somatic	0	0.203228938514906	0.457984576161209
1	54276796	54306336	2	neutral	AA	100	somatic	0	0.00186463080141694	0.0109196971499057
1	64494682	64518314	2	neutral	AA	100	somatic	0	0.20354344705241	0.518780838524764
1	67339384	67368924	2	neutral	AA	27.3398	somatic	0	0.78194862335507	0.829079729308781
1	105481432	105546420	3	gain	AAB	1.61365	germline	1	5.29410800764848e-16	0
1	113253406	113941688	2	neutral	AA	11.0377	somatic	0	0.491394433062076	0.0564770335425631
1	115055346	115093748	2	neutral	AA	100	somatic	0	0.00140093111623634	0.00517501778195628
1	124942384	124974878	3	gain	-	-1	germline	1	9.6721530398284e-07	2.26322403928947e-07
1	125069406	125163934	4	gain	-	-1	somatic	0	2.08014831828341e-07	3.41136967563216e-08
1	125163934	125166888	7	gain	-	-1	germline	1	0.0832695738225995	0.270045584003342
1	125166888	143735732	1	loss	A	-1	germline	1	3.81432825661846e-28	0
1	156993284	157049410	2	neutral	AA	55.0709	somatic	0	0.75955275904498	0.87708048020699
1	158201470	158231010	2	neutral	AA	54.5678	germline	1	0.258600733937763	0.215742573218905
1	160990046	161131838	2	neutral	AA	11.7107	somatic	0	3.62722322926757e-05	4.9276285995159e-05
1	181957538	181963446	2	neutral	AA	54.6927	somatic	0	0.856119178056596	0.810888956869468
1	192840074	192993682	2	neutral	AA	100	somatic	0	0.98304861086978	0.338674605850009
1	193324530	193424966	2	neutral	AA	18.2788	somatic	0	0.028474452346594	0.100750447730768
1	195826568	195844292	2	neutral	AA	100	somatic	0	0.570965653723277	0.968124713133433
1	205616124	205781548	2	neutral	AA	60.9602	somatic	0	0.0274672542181478	0.00867736637727279
1	206830218	206850896	2	neutral	AA	54.8563	somatic	0	0.0256189575740767	0.0300962383511467
1	211358700	211470952	2	neutral	AA	100	somatic	0	0.380392427907124	0.214242211762018
1	212348290	212371922	2	neutral	AA	100	somatic	0	0.336588582815884	0.455382925013993
1	215946262	215961032	2	neutral	AA	100	somatic	0	0.382339497541736	0.369576544577139
1	219219294	219231110	2	neutral	AA	100	somatic	0	0.481040995704317	0.8627889269816
1	227115336	228518486	2	neutral	AA	12.8771	germline	1	1.5050104679259e-08	4.80282989678837e-06
1	234775058	234780966	5	gain	AAABB	4.9907	germline	1	0.0143083862985606	0.0366355156891496
1	236095496	236098450	5	gain	AAABB	14.4534	somatic	0	0.0832724638615962	0.270050603376437
1	248909948	248918810	3	gain	-	-1	somatic	0	0.0144381850768643	0.0368941476555347
2	0	85666	3	gain	-	-1	somatic	0	1.09172976627602e-13	3.69704267200177e-14
2	3178504	3181458	5	gain	-	-1	germline	1	0.0832731863840411	0.270051858230352
2	16223368	16264724	2	neutral	AA	11.3481	somatic	0	0.00136151890666053	0.00251918445096744
2	18746084	18760854	2	neutral	AA	100	somatic	0	0.300900666518015	0.353381168359291
2	26772102	26816412	2	neutral	AA	48.1464	somatic	0	0.390657271139251	0.192646191062796
2	31232642	31244458	2	neutral	AA	100	somatic	0	0.0299551320742524	0.0260003480061658
2	34473180	34505674	1	loss	A	-1	germline	1	1.29211743796143e-07	2.14719887425829e-08
2	34582478	34789258	1	loss	A	-1	germline	1	3.41408089897212e-39	0
2	35752262	35767032	1	loss	A	-1	germline	1	0.000206278275427409	0.000213385939431432
2	53452630	53464446	2	neutral	AA	100	somatic	0	0.0494625183752187	0.164851860016752
2	83211226	83217134	2	neutral	AA	100	somatic	0	0.39956526265029	0.838896588630851
2	89772060	89789784	5	gain	-	-1	germline	1	2.21037139032122e-05	1.22939537140487e-05
2	89789784	89795692	3	gain	AAA	72.2683	germline	1	0.0203362812512789	0.0552428877008742
2	89795692	89807508	5	gain	AAABB	100	germline	1	0.000532220231862154	0.000671113911213772
2	89810462	89825232	5	gain	AAABB	34.3839	germline	1	0.000107574462023645	9.08456087761467e-05
2	89825232	89842956	15	gain	AAAAAAAAAAAAAAA	1.03999	germline	1	2.20953910867883e-05	1.22915344792363e-05
2	89842956	89845910	4	gain	AAAB	19.5686	germline	1	0.0832775216253554	0.270059387443224
2	89845910	89851818	4	gain	AABB	27.016	germline	1	0.0143092983694931	0.0366365456756865
2	91411530	91414484	5	gain	-	-1	germline	1	0.0832731863840411	0.270051858230352
2	108831268	108896256	2	neutral	AA	100	somatic	0	0.0122696556581318	0.0271812445769187
2	109197564	109200518	7	gain	AAAAAAA	11.4013	germline	1	0.0832695738225995	0.270045584003342
2	115708180	115717042	2	neutral	AA	100	somatic	0	0.42874431613701	0.619768009970363
2	119651770	119663586	2	neutral	AA	100	somatic	0	0.924425297054107	0.940165286095512
2	127367618	127411928	2	neutral	AA	54.5707	somatic	0	0.00733368019608052	0.00756861285417676
2	146104840	146119610	1	loss	A	-1	germline	1	0.000274683591413389	0.000199916069392292
2	147700000	147750218	2	neutral	AA	100	somatic	0	0.326727539642564	0.529573122172995
2	160703508	161778764	2	neutral	AA	100	somatic	0	1.80655737947693e-24	0
2	164348744	164363514	2	neutral	AA	100	somatic	0	0.776847749472307	0.985786255402736
2	168250978	168265748	2	neutral	AA	100	somatic	0	0.0302078000257762	0.076437673791473
2	183041656	183118460	2	neutral	AA	100	somatic	0	0.0215155466318004	0.0074051667852989
2	188763554	188858082	2	neutral	AA	77.2676	somatic	0	0.378032206940335	0.458179576897803
2	194080754	194193006	2	neutral	AA	72.5972	somatic	0	0.00803514414289871	0.0253984181657201
2	199699262	199779020	2	neutral	AA	100	somatic	0	0.000129318063418939	0.00123605957445938
2	203170212	203202706	2	neutral	AA	20.2672	somatic	0	0.913998890793586	0.328596450026373
2	206992688	207010412	2	neutral	AA	100	somatic	0	0.561176996642072	0.881535397167172
2	208304264	208333804	2	neutral	AA	54.6088	somatic	0	0.196957229670413	0.0380388926959671
2	222964966	223074264	2	neutral	AA	62.1094	somatic	0	0.0203182129329722	0.0163752470479347
2	223230826	223236734	2	neutral	AA	100	somatic	0	0.610816148888443	0.931395346211879
2	235221112	235247698	2	neutral	AA	100	somatic	0	0.607056520858453	0.957628882022777
3	516950	540582	2	neutral	AA	100	germline	1	0.0012409791631565	0.0027161918756814
3	10336046	10418758	2	neutral	AA	86.5032	somatic	0	8.73360377701473e-17	2.66453525910038e-15
3	26662804	26851860	2	neutral	AA	72.6922	somatic	0	0.76691843680248	0.6543312785753
3	50610882	50649284	2	neutral	AA	54.8533	somatic	0	1.44156829926961e-07	4.83639305925987e-06
3	54350646	54418588	2	neutral	AA	100	somatic	0	0.0662342509043573	0.244342520862389
3	56445032	56456848	2	neutral	AA	54.5678	somatic	0	0.265445039439972	0.535456535161497
3	65451778	65481318	2	neutral	AA	36.379	somatic	0	0.760893219574447	0.873201694414619
3	75669664	75858720	2	neutral	AA	0.562994	germline	1	0.0417452906582443	0.192584576780372
3	90297872	93795408	2	neutral	AA	2.0287	somatic	0	6.11424083472998e-30	0
3	98687232	98696094	1	loss	A	-1	germline	1	0.00332325230635646	0.00710750832806495
3	111859118	111870934	2	neutral	AA	100	somatic	0	0.64355715696065	0.565370157228858
3	120857002	120865864	2	neutral	AA	100	somatic	0	0.211751206663926	0.580059085922648
3	126886116	127125390	3	gain	AAB	1.51073	somatic	0	3.99729704650749e-50	0
3	130820844	130844476	2	neutral	AA	54.7239	somatic	0	0.391126709226265	0.230412518378136
3	134489712	134575378	2	neutral	AA	68.6247	somatic	0	0.94875215118911	0.806895018781254
3	145333846	145531764	2	neutral	AA	42.3336	somatic	0	0.0118860264338051	0.00054937106348163
3	158068540	158130574	2	neutral	AA	46.174	somatic	0	0.113445983338678	0.368855781261781
3	162794940	162907192	1	loss	A	-1	germline	1	5.42399548877816e-24	0
3	165087244	165096106	2	neutral	AA	20.426	somatic	0	0.133379540995234	0.17137490852904
3	171529918	171721928	2	neutral	AA	100	somatic	0	0.000209393572974771	0.00673169804763873
3	172746966	172758782	2	neutral	AA	100	somatic	0	0.440460646118336	0.729563873709534
3	179372788	179431868	2	neutral	AA	21.9345	somatic	0	0.559673251412041	0.332669583709077
3	196692090	196768894	2	neutral	AA	35.9947	somatic	0	4.55328057768842e-09	5.15363907105382e-09
4	1618792	1736952	2	neutral	AA	16.216	somatic	0	0.507120544114021	0.588330491330273
4	1736952	1769446	2	neutral	AA	100	somatic	0	4.89143040257659e-06	2.45728310477311e-05
4	1769446	1784216	3	gain	-	-1	somatic	0	0.000596187180483659	0.00501482524463437
4	10209024	10211978	0	loss	-	-1	germline	1	0.0832739089115642	0.270053113088535
4	16654652	16690100	2	neutral	AA	61.2362	somatic	0	0.139828468583941	0.104612415606483
4	40292560	40295514	4	gain	AAAB	100	germline	1	0.0832739089115642	0.270053113088523
4	45594990	45612714	2	neutral	AA	100	somatic	0	0.234578905384957	0.1841449684042
4	57437576	57517334	2	neutral	AA	27.284	somatic	0	0.532618082564342	0.829077115086927
4	63830032	63850710	1	loss	A	-1	germline	1	4.63738148313485e-05	3.93402925823461e-05
4	67962678	67995172	2	neutral	AA	100	germline	1	0.776039565368567	0.55347644816844
4	68518030	68621420	1	loss	A	-1	germline	1	2.24689351714034e-15	0
4	76544048	76750828	2	neutral	AA	15.7701	somatic	0	1.64113225564059e-08	7.8561662553156e-07
4	101224718	101242442	2	neutral	AA	54.5693	somatic	0	0.000274753130208731	0.000625930254247731
4	105505064	105531650	2	neutral	AA	100	somatic	0	0.174807093134836	0.162443165646898
4	122889354	122963204	2	neutral	AA	100	somatic	0	0.000998544694113488	0.00561101494013838
4	171453114	171459022	0	loss	-	-1	germline	1	0.0143095263952395	0.0366416959884228
4	177609250	177821938	2	neutral	AA	30.2448	somatic	0	0.289911127782587	0.131261784236205
4	184669310	184731344	2	neutral	AA	36.4589	somatic	0	0.0345700643302229	0.086596339861792
4	186429894	186432848	5	gain	AAAAA	3.66318	germline	1	0.0832731863840411	0.270051858230352
5	26586	47264	3	gain	-	-1	somatic	0	0.000109602383828448	9.44602141060846e-05
5	756224	765086	5	gain	AAABB	39.954	germline	1	0.00270055413383871	0.00495837547467026
5	13322540	13352080	2	neutral	AA	60.1961	somatic	0	0.0180737496038014	0.0241210160774145
5	18663372	18681096	2	neutral	AA	100	somatic	0	0.677766674578764	0.754267418146335
5	21576016	21611464	2	neutral	AA	100	somatic	0	0.196009852967241	0.274491327720871
5	23561104	23605414	2	neutral	AA	100	somatic	0	0.0608971646301159	0.146082574918618
5	31471916	31533950	2	neutral	AA	100	somatic	0	0.86605242161286	0.639351256760848
5	37766890	37778706	2	neutral	AA	100	somatic	0	0.762409307329519	0.672154721025879
5	43562638	43598086	2	neutral	AA	100	somatic	0	0.534187830749409	0.347457193655994
5	49656740	49659694	166	gain	-	-1	germline	1	0.0832652389164496	0.27003805507139
5	85887550	85917090	2	neutral	AA	9.9266	somatic	0	0.91966875674426	0.605398156620219
5	93307998	93331630	2	neutral	AA	93.3662	somatic	0	0.0252608903455981	0.0771573477760995
5	95369890	95375798	2	neutral	AA	100	somatic	0	0.0694547446145064	0.145453950315501
5	96994590	97006406	2	neutral	AA	100	somatic	0	0.365240550976847	0.706923873349352
5	122192210	122558506	2	neutral	AA	100	somatic	0	1.23524533320178e-05	0.00010177266819833
5	136979934	137027198	2	neutral	AA	92.9278	somatic	0	0.512384939896458	0.232723177075496
5	156050958	156059820	1	loss	A	-1	germline	1	0.0036713831986208	0.00693593499362466
5	160366752	160411062	2	neutral	AA	71.3319	somatic	0	0.690898943918315	0.748972364017317
5	170888900	170930256	2	neutral	AA	54.568	germline	1	0.284369395286679	0.533135180698087
5	177999178	178120292	2	neutral	AA	24.8249	somatic	0	0.0022229511130851	0.00539992920024479
5	178584070	178587024	5	gain	AAAAA	3.64297	germline	1	0.0832731863840411	0.270051858230352
5	179396420	179408236	2	neutral	AA	100	somatic	0	0.104236180652907	0.101137718905596
5	180950224	181003396	1	loss	A	-1	germline	1	4.71753484996422e-13	4.10782519111308e-15
6	256998	381066	4	gain	-	-1	germline	1	2.89214923564477e-27	0
6	32488092	32665332	0	loss	-	-1	somatic	0	1.86009395357424e-13	5.10702591327572e-15
6	35657734	35663642	1	loss	A	-1	germline	1	0.0201427823530815	0.0546551802877002
6	66299576	66337978	1	loss	A	-1	germline	1	1.5775733510652e-09	1.16646248216057e-10
6	94725918	94740688	3	gain	-	-1	germline	1	0.000108585775249567	9.30065479365361e-05
6	103558378	103579056	2	neutral	AA	54.5792	somatic	0	0.980377258744915	0.322689264423421
6	103747434	103756296	2	neutral	AA	55.0709	somatic	0	0.0532704548004428	0.0614201525381959
6	106429666	106441482	2	neutral	AA	100	somatic	0	0.166568493353986	0.312055779562799
6	107652622	107655576	2	neutral	AA	100	somatic	0	0.986673591084168	0.960780906493854
6	109333448	109422068	2	neutral	AA	100	somatic	0	0.111585278286098	0.186109925864813
6	120257340	120272110	2	neutral	AA	100	somatic	0	0.887077649764185	0.95059147237384
6	124112310	124150712	3	gain	AAB	4.4277	germline	1	4.2727382516386e-10	1.04558584013148e-11
6	125403208	125412070	2	neutral	AA	100	somatic	0	0.976318475157669	0.94757665091592
6	125861078	125866986	1	loss	A	-1	somatic	0	0.030563824723153	0.0588684815681789
6	136640224	136652040	2	neutral	AA	36.6513	somatic	0	0.0282814867082704	0.0327726192816497
6	151170950	151200490	2	neutral	AA	27.2884	somatic	0	0.360346389023347	0.83917361353334
6	157312316	157315270	8	gain	AAAAABBB	2.06595	germline	1	0.0832695738225995	0.270045584003342
6	158310768	158352124	2	neutral	AA	8.62595	somatic	0	0.649516523377532	0.561766786551953
6	159291496	159312174	2	neutral	AA	100	somatic	0	0.00597042232923752	0.0175068439408675
6	160251546	160257454	2	neutral	AA	100	somatic	0	0.369057956730137	0.415984061111222
6	167243664	167252526	2	neutral	AA	54.5678	somatic	0	0.0272236522428373	0.0753632127872907
7	608524	762132	2	neutral	AA	10.8753	somatic	0	1.36940793464236e-15	1.11022302462516e-16
7	1784216	1846250	2	neutral	AA	15.5958	somatic	0	0.118293347245799	0.153463353330646
7	3958360	3976084	2	neutral	AA	100	somatic	0	0.0131280093141523	0.0145096115690716
7	17777172	18397512	2	neutral	AA	28.2176	somatic	0	0.000378028905776315	4.01492332581244e-05
7	33705140	33740588	2	neutral	AA	100	somatic	0	0.00162899146374892	0.000926783213313409
7	36753668	36821610	2	neutral	AA	43.2451	somatic	0	0.772837611957255	0.946093537241138
7	37701902	37805292	2	neutral	AA	56.556	somatic	0	0.000223156543173049	0.00915285593651682
7	41548010	41610044	2	neutral	AA	36.8883	somatic	0	0.0183519297051835	0.00580598733616999
7	48156108	48229958	2	neutral	AA	26.9984	somatic	0	0.613074365282213	0.650204586546242
7	52312386	52418730	2	neutral	AA	42.3725	germline	1	0.104834209580924	0.132943939541566
7	52663912	52675728	3	gain	AAA	100	germline	1	0.000538048600828177	0.000685174762895424
7	53236988	53266528	2	neutral	AA	100	somatic	0	0.0132861984800922	0.00888003117018521
7	57487794	57496656	3	gain	AAB	14.94	germline	1	0.00271047911235352	0.00498429658191624
7	57898400	57995882	2	neutral	AA	4.18195	germline	1	0.00558573651782191	0.0158748732386413
7	61044410	61059180	3	gain	-	-1	germline	1	0.000107658631384536	9.09286516974639e-05
7	62299860	62456422	3	gain	AAB	0.384507	somatic	0	4.15883563679061e-13	9.43800593233846e-13
7	66107566	66116428	2	neutral	AA	38.7332	somatic	0	0.161117212580369	0.423432398854115
7	75040462	75064094	2	neutral	AA	100	somatic	0	0.00188466016210026	0.00152446706079856
7	80992772	81172966	2	neutral	AA	54.5678	somatic	0	0.00102246415156512	0.000160964169189204
7	94711148	94767274	2	neutral	AA	100	somatic	0	0.522765178803415	0.648300297269715
7	98418418	98445004	2	neutral	AA	52.915	somatic	0	0.00145307407559723	0.00175849719252386
7	100949996	100955904	4	gain	AABB	2.04798	germline	1	0.0143112366905112	0.0366403225097549
7	100955904	100958858	15	gain	AAAAAAAAAAAAAAB	8.12549	germline	1	0.083267406346673	0.270041819518212
7	100958858	100973628	4	gain	AABB	0.494429	germline	1	0.000107693118672929	9.09947116105592e-05
7	101363556	101384234	2	neutral	AA	58.5303	somatic	0	0.914503764005688	0.65574058143629
7	114136652	114172100	2	neutral	AA	100	germline	1	0.540291780790927	0.562402846841031
7	125391392	125459334	2	neutral	AA	100	somatic	0	0.452348096141237	0.215084964160904
7	129925782	129961230	2	neutral	AA	54.5787	somatic	0	0.00114713046340084	0.00235984054538363
7	131122152	131175324	2	neutral	AA	100	somatic	0	0.049160395311819	0.12969348035148
7	133024528	133030436	2	neutral	AA	100	somatic	0	0.863711065071488	0.951173521305059
7	134099784	134114554	1	loss	A	-1	germline	1	0.000279109307592297	0.000262731265073146
7	140001876	140264782	2	neutral	AA	17.6192	somatic	0	0.0491488304162649	0.000595547259158891
7	140574952	140616308	2	neutral	AA	100	somatic	0	0.683631641219286	0.441337264490243
7	143847984	143850938	5	gain	AAAAB	53.3202	germline	1	0.0832739089115642	0.270053113088523
7	146391378	146444550	2	neutral	AA	54.6166	somatic	0	0.0456776273722412	0.0627934032481129
7	148376466	148379420	0	loss	-	-1	germline	1	0.0832666838648538	0.27004056469836
7	152399814	152402768	4	gain	AAAB	10.8584	germline	1	0.0832782441833489	0.270060642326933
7	152402768	152408676	8	gain	AAAAAABB	3.20292	germline	1	0.0143072462820115	0.0366334557920814
7	152414584	152485480	2	neutral	AA	21.0047	germline	1	9.20351937006345e-05	2.06881154714011e-05
7	154600544	154609406	1	loss	A	-1	germline	1	0.00537730637762033	0.00881309186546064
7	159288542	159329898	3	gain	AAA	100	somatic	0	4.63886680879475e-06	1.68957942503489e-06
8	643972	649880	0	loss	-	-1	germline	1	0.0143078162802702	0.0366355156891529
8	43237698	43243606	10	gain	-	-1	germline	1	0.0143073602800607	0.0366341424131776
8	43775326	43781234	4	gain	-	-1	germline	1	0.0143103245105944	0.0366379190304804
8	45984918	45987872	2	neutral	AA	100	somatic	0	0.693570115335661	0.845614836173568
8	46614120	46628890	4	gain	-	-1	germline	1	0.000107581674106644	9.08434804181013e-05
8	61339810	61410706	2	neutral	AA	21.9323	somatic	0	0.000123951655019852	0.000131197133030003
8	64202236	64214052	2	neutral	AA	100	somatic	0	0.204713230570235	0.174288070888709
8	65141608	65156378	2	neutral	AA	100	somatic	0	0.0885149956643179	0.0799049914290032
8	76552910	76555864	2	neutral	AA	100	somatic	0	0.483929689003027	0.707803838064367
8	76960562	77052136	2	neutral	AA	100	somatic	0	0.925645861749019	0.386788693272945
8	82744494	82759264	2	neutral	AA	100	somatic	0	0.0370966055643169	0.0429012325511123
8	89113318	89148766	2	neutral	AA	71.1339	somatic	0	0.282197814684398	0.101916772216876
8	96389020	96415606	2	neutral	AA	21.8273	somatic	0	0.20831476563987	0.250693057218245
8	96415606	96418560	1	loss	A	-1	somatic	0	0.119860581756089	0.328733827979703
8	100704814	100719584	2	neutral	AA	12.1262	somatic	0	0.754522045520921	0.923881046509814
8	106949570	107002742	2	neutral	AA	100	somatic	0	0.0184207831422535	0.0508941875895663
8	124579042	124590858	2	neutral	AA	100	somatic	0	0.0213609000868623	0.0143203500973142
8	126165340	126443016	2	neutral	AA	100	somatic	0	0.698936264812003	0.389005516073087
8	137290104	137310782	2	neutral	AA	100	somatic	0	0.406257326341491	0.459350977181205
8	139455386	139467202	2	neutral	AA	54.5873	somatic	0	0.814802269749583	0.974261139690395
8	139676936	139759648	2	neutral	AA	57.1774	somatic	0	2.87158774553636e-13	2.4980018054066e-13
8	140043232	140060956	2	neutral	AA	100	somatic	0	0.388115162219226	0.707225549020796
8	142220330	142273502	2	neutral	AA	7.7299	somatic	0	0.000168833106360969	0.00657806236496705
8	142704786	142763866	2	neutral	AA	33.9372	somatic	0	0.0202683759333871	0.0562691529398061
8	144093166	144149292	2	neutral	AA	58.5212	somatic	0	5.34904618350895e-06	3.44339874391864e-08
8	145029584	145070940	3	gain	AAB	23.6085	somatic	0	7.2876059771246e-10	4.63162397323913e-10
9	23363186	23377956	1	loss	A	-1	germline	1	0.000208886516905628	0.000235196110831559
9	42386946	42389900	5	gain	AAABB	9.2192	germline	1	0.0832739089115642	0.270053113088523
9	79648702	79698920	2	neutral	AA	54.5791	somatic	0	0.992761119148431	0.500857397350556
9	88915400	88974480	2	neutral	AA	15.7501	somatic	0	4.93696788996551e-05	0.000191536450376839
9	94684562	94699332	2	neutral	AA	19.1559	somatic	0	0.319339984755221	0.54466525770859
9	97919192	97939870	2	neutral	AA	59.8192	somatic	0	0.0890567597738813	0.236904167565758
9	111386478	111401248	2	neutral	AA	22.3389	germline	1	0.0701859399010174	0.124299329118233
9	111401248	111445558	2	neutral	AA	100	germline	1	0.166243535758186	0.0869160958798169
9	111947738	111956600	2	neutral	AA	54.5678	somatic	0	0.370155638536035	0.236670530263863
9	113643334	113652196	2	neutral	AA	100	somatic	0	0.320299397302409	0.610441697923201
9	116101062	116106970	2	neutral	AA	100	somatic	0	0.165816098483904	0.471405440579082
9	117078836	117084744	2	neutral	AA	21.8296	somatic	0	0.227226930466671	0.568519491260871
9	125618850	125627712	2	neutral	AA	100	somatic	0	0.629875048846038	0.942522753582654
9	129015950	130767672	1	loss	A	-1	somatic	0	0	0
9	137325552	137328506	4	gain	AAAB	5.988	germline	1	0.0832775216253554	0.270059387443224
10	1985088	2050076	2	neutral	AA	32.8471	somatic	0	0.168358260982196	0.209851977306432
10	2389786	2392740	4	gain	AABB	11.1419	germline	1	0.0832753539818455	0.270055622817634
10	5845966	5851874	1	loss	A	-1	germline	1	0.015686679081187	0.0407690744966261
10	10811640	10826410	2	neutral	AA	100	somatic	0	0.563840271326583	0.644479524414526
10	20899550	20923182	2	neutral	AA	100	somatic	0	0.43464010715769	0.344315734532267
10	23567012	23732436	2	neutral	AA	100	somatic	0	0.592484226918853	0.198167953682558
10	26568276	26659850	2	neutral	AA	0.691766	somatic	0	0.205603092593542	0.285220779594077
10	26937526	26940480	4	gain	AAAB	6.14571	germline	1	0.0832789667464209	0.270061897214899
10	30195788	30210558	2	neutral	AA	100	somatic	0	0.741692633622337	0.844665331521877
10	38484712	38526068	3	gain	AAB	0.538946	germline	1	1.65755215839914e-10	8.47266701242688e-12
10	38526068	38529022	18	gain	AAAAAAAAAAAAAAAAAB	1.5085	germline	1	0.0832666838648538	0.270040564698348
10	38573332	38582194	3	gain	AAB	5.56362	germline	1	0.00270843730205761	0.00498359627404699
10	39341372	39353188	1	loss	A	-1	germline	1	0.00109042338147471	0.0015024156347353
10	39359096	41710480	2	neutral	AA	3.91853	somatic	0	4.01707376298338e-05	4.087164120814e-05
10	41837502	41843410	2	neutral	AA	4.0341	germline	1	0.0289286297005454	0.0797677590001024
10	41858180	41914306	25	gain	AAAAAAAAAAAAAAAAABBBBBBBB	10.3602	germline	1	4.59382786071095e-06	1.66341204643761e-06
10	42301280	42321958	3	gain	AAB	9.47359	germline	1	0.000238834419918144	0.00144555460255602
10	42360360	42375130	2	neutral	AA	70.1477	somatic	0	0.0417847501245461	0.0666856577165837
10	46519592	46560948	4	gain	AABB	0.579809	germline	1	4.2442852219276e-10	1.02309272165257e-11
10	49795578	49801486	1	loss	A	-1	germline	1	0.021942928249969	0.0481574427725231
10	52096744	52146962	2	neutral	AA	93.3849	somatic	0	0.730274664846426	0.893389935977144
10	68001080	68009942	2	neutral	AA	100	somatic	0	0.0341095591357196	0.0547541106777981
10	86345420	86363144	2	neutral	AA	100	somatic	0	0.000170645705398409	0.000605456234051283
10	94483690	94519138	2	neutral	AA	54.5755	germline	1	0.0565518198269347	0.11767790887937
10	95937058	95963644	2	neutral	AA	100	somatic	0	0.407123842815452	0.819670469438777
10	97532218	97567666	2	neutral	AA	36.4045	somatic	0	0.0285077006100156	0.0430223632714385
10	120186444	120204168	2	neutral	AA	100	somatic	0	0.9333251953263	0.89455517029989
10	128463552	128466506	4	gain	AABB	59.591	germline	1	0.0832739089115642	0.270053113088523
10	132138328	132156052	2	neutral	AA	54.5678	somatic	0	0.00201314449629986	0.0223596588009637
11	8991976	9012654	2	neutral	AA	100	germline	1	0.43025974906175	0.534044407976975
11	26544644	26550552	2	neutral	AA	100	somatic	0	0.689777471577432	0.631256562831281
11	47060174	47086760	2	neutral	AA	100	somatic	0	0.470335872924623	0.157525669260827
11	50678824	54755344	2	neutral	AA	4.11329	somatic	0	8.79698646457428e-06	9.19615091218295e-05
11	55222076	55257524	2	neutral	AA	5.06781	somatic	0	0.00052785526453019	0.00426997037049126
11	55310696	55452488	2	neutral	AA	100	somatic	0	0.0011924099768094	0.000570718637548207
11	55662222	55679946	1	loss	A	-1	germline	1	0.000751705200075635	0.00144377205248014
11	67670232	67779530	2	neutral	AA	10.7106	somatic	0	0.101626348282319	0.36688484330373
11	84106288	84268758	2	neutral	AA	18.3921	somatic	0	0.648600286528695	0.36322947235736
11	88318692	88365956	2	neutral	AA	70.2665	somatic	0	0.211732079296368	0.183995119138795
11	135050972	135074604	3	gain	AAB	2.73835	somatic	0	9.66841155902536e-07	2.26186722129817e-07
12	2253902	2256856	5	gain	-	-1	germline	1	0.0832724638615962	0.270050603376437
12	34245722	34455456	3	gain	-	-1	somatic	0	2.51212424416461e-43	0
12	37719626	37743258	2	neutral	AA	5.83211	somatic	0	0.00314347542314075	0.0427518237771973
12	39010524	39043018	2	neutral	AA	100	somatic	0	0.453330075514189	0.251266360501463
12	42339682	42363314	2	neutral	AA	100	somatic	0	0.37887530336218	0.710332531490287
12	74694844	74978428	2	neutral	AA	72.6084	somatic	0	0.052391256135181	0.0133383452092392
12	84082656	84330792	2	neutral	AA	68.7017	somatic	0	9.25661789739137e-07	9.39290269896809e-07
12	92900346	92959426	2	neutral	AA	100	somatic	0	0.025040149639841	0.051119562153658
12	122797780	122815504	2	neutral	AA	100	somatic	0	0.00463054849727518	0.00171157165942581
12	126596624	126652750	2	neutral	AA	100	somatic	0	0.510622547624913	0.553505751285352
12	127955464	128008636	2	neutral	AA	100	germline	1	0.265337807033555	0.24536546087246
13	21375144	21378098	4	gain	AAAB	11.8918	germline	1	0.0832782441833489	0.270060642326933
13	22019116	22025024	1	loss	A	-1	germline	1	0.0202586570226062	0.0550157548851932
13	27454476	27463338	2	neutral	AA	100	somatic	0	0.52246180212853	0.526523671071811
13	50498630	50501584	1	loss	A	-1	germline	1	0.0832977551689156	0.270094525796025
13	57313508	57328278	3	gain	AAB	11.8946	germline	1	0.00011158128519463	9.64072553513162e-05
13	63026544	63059038	3	gain	AAB	0.366048	somatic	0	1.05016155459689e-06	3.84933875277049e-05
13	63059038	63064946	3	gain	AAB	1.20675	germline	1	0.0143169389771376	0.0366588682728839
13	63064946	63067900	5	gain	AAABB	0.690263	germline	1	0.0832731863840411	0.270051858230352
13	89881358	90023150	2	neutral	AA	100	somatic	0	5.89419315212602e-06	1.11276157794826e-05
13	103649952	103691308	2	neutral	AA	100	somatic	0	0.0542845524713417	0.203077668127875
13	108293640	108299548	1	loss	A	-1	germline	1	0.0264426037625183	0.0556980933080153
13	114322754	114343432	3	gain	AAB	11.444	somatic	0	6.00075058680864e-06	3.45406394286485e-06
14	16093392	16096346	12	gain	-	-1	germline	1	0.083267406346673	0.270041819518212
14	22917132	22934856	2	neutral	AA	100	somatic	0	0.0794535616607571	0.0349125551121611
14	24470936	24479798	2	neutral	AA	11.3491	germline	1	0.28639453934093	0.594242455736183
14	24896312	24908128	2	neutral	AA	100	somatic	0	0.0614481723039482	0.155054183125065
14	34106884	34109838	3	gain	-	-1	somatic	0	0.0847504088801403	0.272607990202457
14	38150910	38162726	2	neutral	AA	100	somatic	0	0.642069130982191	0.587697739055512
14	45264142	45284820	2	neutral	AA	100	somatic	0	0.0760779127405004	0.229633442063256
14	47237414	47249230	1	loss	A	-1	germline	1	0.00171238192396293	0.0015741384738267
14	55419994	55440672	2	neutral	AA	54.5904	germline	1	0.942190423785118	0.998047287270406
14	59375400	59422664	2	neutral	AA	41.0604	somatic	0	0.275217833867266	0.241980372426252
14	59537870	59546732	2	neutral	AA	100	somatic	0	0.537595651627111	0.678230134604998
14	76493830	76511554	2	neutral	AA	100	somatic	0	0.0184480990397891	0.046916108036908
14	79639840	79648702	1	loss	A	-1	germline	1	0.0045703316811698	0.00766590428189118
14	79834804	79867298	2	neutral	AA	36.806	somatic	0	0.761957564537884	0.137448487530407
14	83025124	83036940	2	neutral	AA	54.5693	somatic	0	0.13552023453489	0.0996678686535466
14	87940580	87987844	2	neutral	AA	100	somatic	0	0.984034512530939	0.995260948218055
14	89323052	89361454	2	neutral	AA	15.6243	somatic	0	0.0591358311699908	0.097255393760862
14	95671198	95872070	2	neutral	AA	21.8656	somatic	0	0.00137943886589559	0.0101115151039991
14	99215998	99248492	2	neutral	AA	100	somatic	0	0.414740913934775	0.658332697409087
14	99924958	100051980	2	neutral	AA	6.35948	germline	1	0.00125567232720292	0.00125591768188238
14	100285346	100288300	2	neutral	AA	100	germline	1	0.364452084644676	0.607335368393391
14	102107964	102110918	2	neutral	AA	100	somatic	0	0.319149190102545	0.564486076688582
14	106866858	106878674	3	gain	-	-1	somatic	0	0.0005328508448366	0.000672158704025927
15	0	17080028	8	gain	-	-1	germline	1	NA	NA
15	17080028	17082982	12	gain	-	-1	germline	1	0.083267406346673	0.270041819518212
15	17082982	20672092	8	gain	-	-1	somatic	0	5.55501431933765e-12	7.78810349544301e-12
15	22225896	22252482	5	gain	AAABB	2.60173	germline	1	2.21028978089054e-05	1.22932624575522e-05
15	23460668	23499070	2	neutral	AA	11.2408	somatic	0	0.976529293128765	0.792124390676889
15	25168080	25250792	3	gain	AAB	18.0134	somatic	0	5.83459833826979e-20	0
15	26326048	26331956	2	neutral	AA	27.2839	somatic	0	0.449204083861504	0.572523243032055
15	40011930	40032608	2	neutral	AA	100	somatic	0	0.605557082781987	0.672747383895698
15	40354594	40514110	2	neutral	AA	90.3911	somatic	0	0.364250209570287	0.740028008743536
15	41420988	41435758	2	neutral	AA	100	somatic	0	0.00901056788140653	0.0203477862520806
15	45789954	45804724	2	neutral	AA	100	somatic	0	0.822688384458832	0.757972291393866
15	48348118	48392428	2	neutral	AA	100	somatic	0	0.0088055727945583	0.0376127377847995
15	49139790	49290444	2	neutral	AA	47.6905	somatic	0	0.000181117589961161	0.000731893160682118
15	58882082	58926392	2	neutral	AA	100	somatic	0	0.552642973990721	0.839101263246274
15	59390170	59407894	2	neutral	AA	100	somatic	0	0.996513640627692	0.829819915834625
15	62441652	62450514	2	neutral	AA	43.9028	somatic	0	0.187965853127843	0.267483612308691
15	64940736	65050034	2	neutral	AA	27.2865	somatic	0	5.8448925532782e-06	4.52097931105122e-05
15	81941006	81952822	2	neutral	AA	54.568	germline	1	0.519689263353392	0.62479162935304
16	35448	38402	3	gain	-	-1	somatic	0	0.0833259442405715	0.270143474062782
16	94528	239274	2	neutral	AA	4.57417	somatic	0	2.74046580075771e-12	1.95929938939798e-11
16	1025038	1027992	5	gain	AAAAA	2.56139	germline	1	0.0832731863840411	0.270051858230352
16	1282036	1287944	2	neutral	AA	15.645	somatic	0	0.80024913769396	0.607315738922689
16	13863122	13877892	2	neutral	AA	70.2665	somatic	0	0.883089879235808	0.77559909615263
16	21522844	21581924	4	gain	AABB	3.86416	germline	1	2.03751595626506e-07	3.0499163305997e-08
16	22615824	22698536	4	gain	AABB	1.65785	germline	1	2.26801614863419e-19	0
16	23191854	23245026	2	neutral	AA	100	somatic	0	0.84168543628486	0.67044188373485
16	31401020	31427606	2	neutral	AA	71.2727	somatic	0	0.00689333376184331	0.00950735983972417
16	34062574	34065528	13	gain	AAAAAAAAABBBB	18.4781	germline	1	0.083267406346673	0.270041819518212
16	34068482	34083252	3	gain	AAB	22.3313	somatic	0	0.000820136209449892	0.00177667188940833
16	34083252	34086206	6	gain	AAAAAA	14.309	germline	1	0.0832710188319414	0.270048093681377
16	34086206	34095068	2	neutral	AA	23.9053	somatic	0	0.0325650642142257	0.193988901069392
16	34095068	34100976	5	gain	AAABB	7.42306	germline	1	0.0143083862985606	0.0366355156891496
16	35997444	36089018	2	neutral	AA	4.84847	germline	1	0.0024973419341305	0.00496340707381659
16	36121512	36127420	4	gain	-	-1	germline	1	0.0143097544241913	0.0366386057247684
16	46401432	46404386	19	gain	AAAAAAAAAAAAAAAAAAA	3.41358	germline	1	0.0832666838648538	0.270040564698348
16	46404386	46466420	3	gain	AAA	0.831843	germline	1	0.000151850302505992	0.000100945371905969
16	46773636	46800222	2	neutral	AA	32.9521	somatic	0	0.000456903414086165	0.00408877971230004
16	56096460	56126000	2	neutral	AA	100	somatic	0	0.0149689855617182	0.0469852430921051
16	58116996	58122904	2	neutral	AA	27.2839	somatic	0	0.340275176363349	0.688879896874979
16	63440104	63448966	2	neutral	AA	54.579	somatic	0	0.77724561305524	0.778757848050199
16	69909364	69918226	2	neutral	AA	100	somatic	0	0.644789071532521	0.98801346918222
16	80942554	80951416	1	loss	A	-1	germline	1	0.00610325173986813	0.00969130557523068
16	86558108	86561062	2	neutral	AA	100	somatic	0	0.404043633208029	0.642565959341236
16	88330508	88354140	2	neutral	AA	50.2745	somatic	0	0.0688953651177803	0.230901695819184
16	88498886	88501840	4	gain	AABB	8.29753	germline	1	0.0832746314441657	0.27005436795095
16	89001066	89048330	2	neutral	AA	16.4078	somatic	0	0.0107982630138859	0.00835941082390768
16	89967024	89984748	2	neutral	AA	100	somatic	0	0.000679974275478605	0.000826013301490902
17	8401176	8407084	2	neutral	AA	100	somatic	0	0.287550212143278	0.716342920732442
17	16994362	17115476	2	neutral	AA	52.5863	somatic	0	0.1642474923706	0.225883413007004
17	18300030	18356156	2	neutral	AA	100	germline	1	0.000950779532463391	0.000848765519536498
17	19797708	19821340	2	neutral	AA	54.5678	somatic	0	0.0682448653985688	0.00654897408983313
17	20161050	20202406	2	neutral	AA	54.8585	somatic	0	0.00344808008738801	0.00409449404262718
17	21289478	21304248	4	gain	AABB	0.23104	germline	1	0.000107587283819944	9.08583799189566e-05
17	21676452	21859600	4	gain	-	-1	somatic	0	2.19626570432971e-06	9.58955898977543e-06
17	21859600	21886186	3	gain	-	-1	germline	1	3.37100796791367e-05	4.04617945243269e-05
17	21886186	21968898	0	loss	-	-1	germline	1	6.08582092902726e-20	0
17	21968898	21977760	6	gain	AAAABB	-1	germline	1	NA	NA
17	21977760	22157954	6	gain	AAAABB	0.217039	germline	1	1.9728282691249e-11	1.87405646556726e-13
17	26783918	26878446	3	gain	-	-1	somatic	0	2.71829676960455e-18	0
17	26937526	26940480	15	gain	AAAAAAAAAABBBBB	8.13382	germline	1	0.083267406346673	0.270041819518212
17	29859032	30118984	2	neutral	AA	84.6479	somatic	0	4.20756087108678e-09	5.05705466391504e-09
17	35507080	35613424	2	neutral	AA	16.9278	somatic	0	0.0010423205691769	0.00169139195285239
17	39952850	39964666	2	neutral	AA	100	somatic	0	0.0271131514330388	0.0708869049368487
17	41444620	41450528	2	neutral	AA	58.6072	somatic	0	0.934929989476536	0.997406833735357
17	42162442	42183120	2	neutral	AA	54.5681	somatic	0	0.348320831540974	0.272655682240438
17	49237272	49311122	2	neutral	AA	100	somatic	0	5.6448174751563e-09	1.99282690349634e-09
17	53231080	53266528	2	neutral	AA	100	somatic	0	0.0514939274168293	0.0175024644816767
17	57449392	57523242	2	neutral	AA	100	somatic	0	0.779737314502258	0.0637382433051821
17	58566004	58589636	2	neutral	AA	100	somatic	0	0.0515014253727798	0.0398420231719178
17	64341074	64651244	2	neutral	AA	72.5185	somatic	0	6.92717438308645e-23	0
17	66284806	66305484	2	neutral	AA	100	somatic	0	0.129279771607539	0.176944531110847
17	66795848	66798802	4	gain	AABB	18.2962	germline	1	0.0832782441833489	0.270060642326933
17	67608198	67646600	2	neutral	AA	100	somatic	0	0.0687278589212914	0.113860883838133
17	73105592	73108546	1	loss	A	-1	somatic	0	0.127575015875422	0.340098359561014
17	79111074	79114028	2	neutral	AA	54.5678	somatic	0	0.0907400532429657	0.2827890517531
17	79114028	79116982	3	gain	-	-1	somatic	0	0.0842853311316795	0.271805264476308
17	79512818	79521680	2	neutral	AA	100	somatic	0	0.0479351805879983	0.0727610374371073
17	81415194	81427010	2	neutral	AA	25.2478	somatic	0	0.0425784580946388	0.0977927660652884
18	5305384	5308338	1	loss	A	-1	germline	1	0.0861922788041031	0.275086286664966
18	48693736	48696690	3	gain	AAA	100	somatic	0	0.0856483485402519	0.274152636262475
18	50167782	50173690	1	loss	A	-1	germline	1	0.0302961830335245	0.0581006149701784
18	51148510	51181004	2	neutral	AA	16.5028	somatic	0	0.468131800063419	0.400243735755593
18	51898826	51901780	2	neutral	AA	100	somatic	0	0.260055340119634	0.503871953644896
18	52790934	52793888	2	neutral	AA	100	somatic	0	0.112324423522261	0.31733689114353
18	55676992	55730164	2	neutral	AA	36.4385	somatic	0	0.958355733290264	0.4110367203243
18	59980970	60022326	2	neutral	AA	54.5755	somatic	0	0.328162332326381	0.167711320961404
18	61260052	61263006	2	neutral	AA	100	somatic	0	0.653739488709783	0.823027568780085
18	63723688	63741412	2	neutral	AA	54.5873	germline	1	0.568520101092059	0.50602556059185
18	64001364	64022042	2	neutral	AA	36.3854	somatic	0	0.686209259140534	0.874999416696638
18	68391008	68393962	2	neutral	AA	100	somatic	0	0.230544926029212	0.471269083350654
18	69079290	69088152	1	loss	A	-1	germline	1	0.0037305988642413	0.00669935589764081
18	69271300	69289024	2	neutral	AA	100	somatic	0	0.684490168219188	0.592633147231912
18	69386506	69389460	2	neutral	AA	100	somatic	0	0.288519013247811	0.533785842906848
18	69696676	69699630	2	neutral	AA	100	somatic	0	0.294230861710164	0.539665070096938
18	69850284	69859146	2	neutral	AA	100	somatic	0	0.699465333374897	0.917287309202008
18	71173676	71179584	2	neutral	AA	54.5706	somatic	0	0.0829985289918632	0.1339073211713
18	71291836	71294790	2	neutral	AA	100	somatic	0	0.289540593431999	0.53485748701849
18	71531110	71557696	2	neutral	AA	27.588	somatic	0	0.173894585476835	0.0896683502550877
18	72186898	72189852	2	neutral	AA	100	somatic	0	0.906856992007905	0.938173511042508
18	74177894	74192664	2	neutral	AA	100	germline	1	0.462228870768781	0.821903878712101
18	74671212	74674166	2	neutral	AA	15.5908	somatic	0	0.902589420519659	0.936787462905451
18	74954796	74960704	2	neutral	AA	54.6058	somatic	0	0.0609873330529142	0.108709461347111
18	75448114	75477654	2	neutral	AA	100	somatic	0	0.399162929550887	0.676196014321447
18	76375670	76378624	2	neutral	AA	100	somatic	0	0.78663063508635	0.891837145074698
18	77303226	77306180	2	neutral	AA	100	somatic	0	0.620070644315081	0.802608579640682
18	77956060	77976738	2	neutral	AA	18.8177	somatic	0	0.54047713951109	0.799418358701415
18	77976738	77979692	2	neutral	AA	100	somatic	0	0.158087373492143	0.38252037825358
19	1946686	1961456	2	neutral	AA	40.2229	somatic	0	0.0779797834815517	0.0869202395290232
19	6262480	6286112	2	neutral	AA	36.5707	somatic	0	0.0874309630789559	0.123109989109061
19	7281610	7287518	2	neutral	AA	100	somatic	0	0.0815006155262496	0.183507296922472
19	7414540	7449988	2	neutral	AA	100	somatic	0	1.33905740080545e-05	3.63238748668504e-06
19	7449988	7452942	9	gain	AAAAAABBB	2.78187	germline	1	0.0832688513255459	0.270044329170709
19	7574056	7591780	2	neutral	AA	22.3998	somatic	0	0.0132611144783972	0.00736945897735275
19	8572508	8607956	2	neutral	AA	56.3281	somatic	0	0.00031884913329314	0.00177838848345868
19	8859046	8906310	2	neutral	AA	1.31432	germline	1	0.0864372390127264	0.0182926417704034
19	12303410	12327042	2	neutral	AA	54.5873	germline	1	0.000166744185036738	9.72075181446819e-05
19	17461094	17493588	2	neutral	AA	54.5678	germline	1	3.17090222772893e-06	3.55695637455078e-06
19	19357562	19455044	2	neutral	AA	23.2971	somatic	0	0.000188871683784888	0.00030242389863322
19	21064974	21106330	2	neutral	AA	27.2857	somatic	0	0.0042866821872492	0.0243853393579497
19	21366282	21386960	2	neutral	AA	21.8272	somatic	0	0.0243853893914945	0.0642970705361667
19	21516936	21587832	2	neutral	AA	0.292249	germline	1	0.0243721535164579	0.00422284693398656
19	24332098	24382316	4	gain	AABB	4.63941	germline	1	9.25540119994443e-13	3.44169137633799e-15
19	24382316	24405948	4	gain	AABB	1.44985	germline	1	2.21051829452393e-05	1.2294990668571e-05
19	27336316	27342224	3	gain	AAB	2.0899	germline	1	0.0143143156764129	0.0366506246977927
19	27345178	27380626	6	gain	AAAABB	0.149773	somatic	0	9.22445339728962e-09	5.58368240533014e-10
19	27380626	27383580	3	gain	AAB	3.81026	germline	1	0.0832804118878004	0.2700644070036
19	27383580	27398350	6	gain	AAAABB	0.295846	germline	1	0.000107553629679687	9.0830711264922e-05
19	27723290	27729198	4	gain	AABB	100	germline	1	0.0143089563368836	0.0366358590151802
19	32358116	32369932	2	neutral	AA	30.0839	somatic	0	0.489247915453714	0.483506526971396
19	34641558	34750856	2	neutral	AA	6.29984	somatic	0	0.593251415898994	0.41466216771013
19	35362334	35371196	1	loss	A	-1	germline	1	0.00364415743345907	0.00716350425393109
19	39973528	40112366	2	neutral	AA	82.2434	somatic	0	6.10849213378402e-09	6.13536925930802e-07
19	53015438	53047932	3	gain	AAB	2.72768	germline	1	4.7419820222555e-08	5.73724368013728e-09
19	55328420	55334328	2	neutral	AA	100	germline	1	0.0615134502355211	0.0972647273721762
19	56935396	56944258	2	neutral	AA	45.3842	somatic	0	0.129108325883658	0.381498624687347
19	58279466	58300144	2	neutral	AA	100	somatic	0	0.000255490463980049	0.000482657442686829
20	64988	67942	6	gain	-	-1	germline	1	0.0832710188319414	0.270048093681377
20	189056	200872	2	neutral	AA	100	somatic	0	0.203714323643572	0.203323978872088
20	242228	245182	2	neutral	AA	100	somatic	0	0.130674127246665	0.34458409983767
20	2593612	2599520	2	neutral	AA	54.5734	somatic	0	0.95927013554876	0.862806492001974
20	4995214	5145868	2	neutral	AA	54.6773	somatic	0	8.79677769420351e-17	9.99200722162641e-16
20	5145868	5600784	2	neutral	AA	20.2852	somatic	0	0.38986113691125	0.322883886996153
20	5600784	5642140	2	neutral	AA	54.8601	somatic	0	9.54854557091315e-07	1.7888954007006e-07
20	7458850	7491344	2	neutral	AA	27.2889	somatic	0	0.382496744024667	0.57105078406589
20	8903356	9435076	2	neutral	AA	37.5131	somatic	0	1.37871976376183e-13	7.57560680852976e-12
20	11963700	11984378	2	neutral	AA	90.3907	somatic	0	0.355804044800019	0.310329242789494
20	17599932	17602886	2	neutral	AA	100	somatic	0	0.808196875218749	0.901274417543558
20	19150782	19192138	2	neutral	AA	100	somatic	0	0.242072307661093	0.596802532198151
20	20267394	20282164	2	neutral	AA	100	somatic	0	0.140839812492565	0.299207627913368
20	26317186	26323094	0	loss	-	-1	germline	1	0.0143855229061568	0.0368706640010864
20	28780822	28786730	9	gain	-	-1	germline	1	0.0143072462820115	0.0366334557920814
20	28804454	28872396	10	gain	-	-1	germline	1	4.59443460455319e-06	1.66357573649911e-06
20	29262324	29265278	32	gain	-	-1	germline	1	0.0832659613881126	0.270039309882741
20	29885618	29894480	6	gain	-	-1	germline	1	0.0143082722933	0.0366351723659341
20	30148524	30169202	1	loss	A	-1	germline	1	0.000104950729469839	4.87461003746414e-05
20	30281454	30284408	5	gain	AAABB	7.27652	germline	1	0.0832739089115642	0.270053113088523
20	30813174	30816128	8	gain	-	-1	germline	1	0.0832695738225995	0.270045584003342
20	30940196	30943150	6	gain	-	-1	germline	1	0.0832717413442297	0.270049348526779
20	31164700	31167654	4	gain	-	-1	germline	1	0.0832782441833489	0.270060642326933
20	31167654	31182424	3	gain	-	-1	germline	1	0.000204444484900338	0.000570902036186927
20	31182424	31188332	10	gain	-	-1	germline	1	0.0143073602800607	0.0366341424131776
20	31188332	31241504	3	gain	AAB	16.4134	germline	1	4.93449264477969e-06	2.09410693574608e-06
20	31241504	31244458	27	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAA	9.0746	germline	1	0.0832666838648538	0.270040564698348
20	34024172	34027126	2	neutral	AA	100	somatic	0	0.465628708074425	0.693493927016967
20	34756764	34765626	2	neutral	AA	100	somatic	0	0.20197738948034	0.535336847160008
20	35566160	35572068	1	loss	A	-1	somatic	0	0.0301493109601088	0.0575584332862273
20	36242626	36248534	2	neutral	AA	100	somatic	0	0.783104171312925	0.909256070217136
20	47547584	47565308	2	neutral	AA	27.307	somatic	0	0.0462495788685651	0.0349442207841099
20	48678966	48714414	2	neutral	AA	100	somatic	0	0.0141539870743028	0.0632958467392126
20	49077756	49113204	2	neutral	AA	36.502	somatic	0	3.55403110283977e-06	9.99988683969555e-07
20	49231364	49334754	2	neutral	AA	100	somatic	0	0.0210720079454515	0.00309770272091991
20	53461492	53523526	2	neutral	AA	37.618	somatic	0	0.00111165170706394	0.0020195532484043
20	53541250	53570790	2	neutral	AA	100	somatic	0	0.00191329247782091	0.00123169969482773
20	53644640	53647594	2	neutral	AA	100	somatic	0	0.145142169144544	0.364967193768898
20	56276654	56285516	2	neutral	AA	25.866	somatic	0	0.393908039338249	0.852941082165658
20	57848182	57851136	2	neutral	AA	100	germline	1	0.323397967545195	0.568682628882073
20	59638306	59653076	2	neutral	AA	54.5687	somatic	0	0.666901951040318	0.570131618361434
20	59744650	59747604	3	gain	-	-1	somatic	0	0.083896438351687	0.271132608752873
20	61543636	61564314	2	neutral	AA	33.0467	somatic	0	0.0808895561087305	0.0976813449620458
20	61821312	61836082	2	neutral	AA	14.9261	somatic	0	0.401738816441625	0.801119789690141
21	0	10271058	6	gain	AAAABB	-1	germline	1	9.22205268609592e-09	5.58310730980338e-10
21	10271058	10274012	52	gain	-	-1	germline	1	0.0832659613881126	0.270039309882741
21	10274012	10652124	6	gain	AAAABB	-1	germline	1	NA	NA
21	10652124	10755514	6	gain	AAAABB	0.720279	somatic	0	1.0886495023372e-20	0
21	15957508	15969324	2	neutral	AA	55.8585	somatic	0	0.38941518207154	0.689402377796103
21	22884638	22890546	2	neutral	AA	100	somatic	0	0.417442243226648	0.775144404925214
21	23661540	23670402	2	neutral	AA	100	somatic	0	0.958654822093544	0.791908449133555
21	24450258	24456166	2	neutral	AA	54.5678	somatic	0	0.831276764816159	0.987967051849102
21	29711332	29740872	2	neutral	AA	54.5734	somatic	0	0.328042461870509	0.415604057950918
21	30721600	30724554	2	neutral	AA	100	somatic	0	0.521402608810177	0.735905392392598
21	32709642	32712596	2	neutral	AA	100	somatic	0	0.680639792946789	0.838443647110214
21	33264994	33267948	2	neutral	AA	100	germline	1	0.977085583200187	0.958394033194842
21	36538026	36588244	2	neutral	AA	36.5471	somatic	0	0.428338784937812	0.698851370099336
21	38050474	38056382	2	neutral	AA	72.5226	germline	1	0.512732248399722	0.855878194242733
21	39654496	39657450	2	neutral	AA	100	somatic	0	0.40722169019796	0.645341763190614
21	41929076	41934984	1	loss	A	-1	germline	1	0.0181366125921235	0.0483516183805287
21	42129948	42132902	2	neutral	AA	100	somatic	0	0.326643655429409	0.571811293592953
21	42484428	42496244	2	neutral	AA	100	somatic	0	0.192738802471826	0.257013893407933
21	42768012	42770966	2	neutral	AA	100	somatic	0	0.711895638300532	0.855447488710396
21	44747192	44753100	2	neutral	AA	36.3786	somatic	0	0.938170807562067	0.991091927541935
21	45792908	45801770	2	neutral	AA	36.7139	somatic	0	0.492579234837247	0.877961230200259
21	46085354	46094216	2	neutral	AA	68.9724	somatic	0	0.934700961516531	0.996161564760136
21	46676154	46679108	3	gain	-	-1	somatic	0	0.0833722199744432	0.270223813453447
22	10725974	10731882	8	gain	-	-1	germline	1	0.0143074742789112	0.0366334557920814
22	11626944	11629898	4	gain	AABB	28.9426	germline	1	0.0832746314441657	0.27005436795095
22	17602886	17605840	2	neutral	AA	100	somatic	0	0.128928337964682	0.342063833364258
22	23171176	23174130	2	neutral	AA	100	somatic	0	0.160201757833947	0.38530506251007
22	23289336	23608368	1	loss	A	-1	somatic	0	2.18301379331077e-19	0
22	24798830	25002656	2	neutral	AA	100	somatic	0	0.00216851521119102	0.000125626375849786
22	26704160	26715976	2	neutral	AA	100	somatic	0	0.470547927944272	0.196057628465682
22	29117578	29120532	3	gain	AAB	6.94226	germline	1	0.0832883605285089	0.270078211145787
22	34674052	34718362	2	neutral	AA	100	somatic	0	0.553685292619376	0.758407495140183
22	35436184	35492310	2	neutral	AA	86.3292	somatic	0	0.173964186890435	0.0816214492619681
22	36502578	36508486	2	neutral	AA	100	somatic	0	0.0631734568792987	0.110118406144945
22	36508486	36511440	1	loss	A	-1	somatic	0	0.126428518208033	0.338428498234803
22	39205488	39211396	2	neutral	AA	100	germline	1	0.328371361903215	0.419848030928581
22	43134308	43137262	2	neutral	AA	100	somatic	0	0.669569477746124	0.832178595011501
22	45326176	45329130	4	gain	AAAA	14.5439	germline	1	0.0832782441833489	0.270060642326933
22	45346854	45414796	2	neutral	AA	44.8384	somatic	0	0.00124551308729136	0.00299062719183329
22	49204778	49243180	2	neutral	AA	21.1101	germline	1	0.312975849633487	0.685504809811995
22	49854658	49931462	2	neutral	AA	18.2523	germline	1	2.2074294664616e-05	6.3283258638358e-05
22	50643376	50646330	3	gain	AAB	6.39433	germline	1	0.0833071506676935	0.270110841165583
X	70916678	70922586	0	loss	-	-1	germline	1	0.0143178515289651	0.0366660827317967
X	78266230	78272138	2	gain	-	-1	germline	1	0.0793024364469865	0.231740878923817
Y	10652124	10758468	3	gain	-	-1	germline	1	8.11104684836322e-06	5.27766931731621e-05
Y	10758468	10761422	7	gain	-	-1	germline	1	0.0832695738225995	0.270045584003342
Y	10761422	10808686	3	gain	-	-1	somatic	0	9.64403320138494e-09	5.85386183971082e-11
Y	10808686	10923892	2	gain	-	-1	somatic	0	0.109843043047935	0.000843551723046287
Y	10923892	10926846	4	gain	-	-1	germline	1	0.0832789667464209	0.270061897214899
Y	10926846	10985926	2	gain	-	-1	somatic	0	7.03810165974454e-05	1.93007741670082e-05
Y	10985926	10988880	8	gain	-	-1	germline	1	0.0832695738225995	0.270045584003342
Y	10988880	10997742	2	gain	-	-1	germline	1	0.100588778814798	0.146081706252178
Y	10997742	11000696	6	gain	-	-1	germline	1	0.0832717413442297	0.270049348526779
Y	11003650	11039098	2	gain	-	-1	germline	1	0.284701846339958	0.302035265591873
Y	11039098	11042052	2	gain	AA	25.5075	germline	1	0.135931046850136	0.352093224208076
Y	11290188	11334498	17	gain	AAAAAAAAAAABBBBBB	0.631749	somatic	0	4.32224862875939e-08	4.12443257324924e-09
Y	11529462	11532416	17	gain	AAAAAAAAAAAAAAAAB	1.98156	germline	1	0.0832666838648538	0.270040564698348
Y	11686024	11691932	3	gain	AAA	30.9006	germline	1	0.014338397514177	0.0367224669636952
Y	11691932	11709656	2	gain	AB	33.5967	somatic	0	0.00149619435560604	0.00321714226088632
Y	11721472	11724426	31	gain	AAAAAAAAAAAAAAAAAAAAAABBBBBBBBB	100	germline	1	0.0832659613881126	0.270039309882741
Y	11724426	11745104	2	gain	AA	2.27394	germline	1	0.608494839728636	0.810471655091747
Y	11745104	11748058	6	gain	AAAABB	12.6097	germline	1	0.0832695738225995	0.270045584003342
Y	26636218	26656896	3	gain	AAB	100	germline	1	0.00270816211861227	0.00753751016996163
Y	56826098	56837914	24	gain	AAAAAAAAAAAAAAAABBBBBBBB	7.11006	germline	1	0.000532059677333196	0.000670988135379802
Y	56837914	56843822	7	gain	AAAAABB	10.9758	germline	1	0.0143077022790159	0.0366341424131776
