chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	5667168	5670275	3	gain	-	-1	germline	1	0.0832935148811225	0.270087127234443
1	5670275	5673382	5	gain	-	-1	germline	1	0.0832668053933506	0.270040740764073
1	5673382	5676489	3	gain	-	-1	germline	1	0.083283593404192	0.270069897295115
1	16613129	16631771	8	gain	-	-1	germline	1	0.00269993859882473	0.00495768828454668
1	16721874	16724981	5	gain	-	-1	germline	1	0.0832675684252771	0.27004206601109
1	31430412	31433519	4	gain	-	-1	germline	1	0.0832706206096247	0.27004736704663
1	34636836	34646157	1	loss	A	-1	germline	1	0.00270279132889762	0.00496299036822989
1	55661905	55668119	0	loss	-	-1	somatic	0	0.0143063598800066	0.0366317778230874
1	72290569	72346495	1	loss	A	-1	germline	1	2.05286708763241e-13	5.55111512312578e-16
1	103363676	103366783	0	loss	-	-1	somatic	0	0.08326527934649	0.270038090284281
1	105473329	105482650	1	loss	A	-1	somatic	0	0.0027309939263884	0.00505909608211219
1	109642923	109649137	1	loss	A	-1	somatic	0	0.0143108148901476	0.0366455574170995
1	124941791	124975968	3	gain	-	-1	somatic	0	9.64951633162832e-07	2.25364586770027e-07
1	125069178	125075392	3	gain	-	-1	somatic	0	0.0143108148901476	0.0366419307685275
1	125081606	125084713	5	gain	-	-1	somatic	0	0.0832675684252771	0.27004206601109
1	125084713	125162388	3	gain	-	-1	somatic	0	0.000153044387311982	0.000197498990857192
1	125162388	125165495	5	gain	-	-1	somatic	0	0.0832668053933506	0.270040740764073
1	143617968	143658359	2	neutral	AA	36.3786	somatic	0	0.825793012354643	0.939827027860308
1	152581663	152612733	1	loss	A	-1	germline	1	4.4400655285353e-08	4.6631684069709e-09
1	152786725	152799153	1	loss	A	-1	germline	1	0.0143075638161439	0.0366350410013706
1	169256932	169272467	1	loss	A	-1	germline	1	0.000108004507495548	9.1371113535077e-05
1	169592488	169608023	2	neutral	AA	100	somatic	0	0.457603764084242	0.710322798701832
1	169778908	169788229	2	neutral	AA	100	somatic	0	0.338360760088345	0.760592647672361
1	170303991	170335061	2	neutral	AA	72.1171	somatic	0	0.269979722789143	0.378604624930776
1	173243213	173268069	2	neutral	AA	54.6578	somatic	0	0.00160159960195556	0.0221765613153745
1	175924554	176437209	2	neutral	AA	47.291	somatic	0	0.936688853507156	0.794444672683619
1	180355136	180361350	2	neutral	AA	100	somatic	0	0.173890999403662	0.490786235476283
1	180376885	180491844	2	neutral	AA	29.4208	somatic	0	0.770534893222529	0.766569724210839
1	181110137	181138100	2	neutral	AA	85.1541	somatic	0	0.494657843662251	0.870263962161624
1	189763132	189766239	2	neutral	AA	100	somatic	0	0.392469211342537	0.632473254073918
1	192400975	192422724	2	neutral	AA	100	somatic	0	0.423587986091371	0.486567379433786
1	194069434	194091183	2	neutral	AA	36.3786	somatic	0	0.954363669761409	0.998458781816382
1	196558141	196564355	2	neutral	AA	100	somatic	0	0.66143445942717	0.666763372899038
1	202980310	203002059	2	neutral	AA	72.3092	somatic	0	0.518686819520954	0.347078041345413
1	209309269	209321697	2	neutral	AA	54.5679	somatic	0	0.710467904841634	0.787518167152909
1	209905813	209912027	1	loss	A	-1	germline	1	0.0143161143329578	0.0366473708591536
1	212512586	212596475	2	neutral	AA	100	somatic	0	0.79473694624387	0.941805315862659
1	214817980	214821087	2	neutral	AA	100	somatic	0	0.111179949233719	0.315580027333136
1	215681726	215762508	2	neutral	AA	100	somatic	0	0.889208809732865	0.919670323645712
1	220012884	220028419	2	neutral	AA	36.3786	somatic	0	0.0305216730196174	0.0432902149064059
1	223498938	223508259	2	neutral	AA	100	somatic	0	0.4407036186459	0.918088137058131
1	224011593	224014700	7	gain	AAAAAAA	1.52276	germline	1	0.0832660423670883	0.270039415521805
1	224086161	224114124	2	neutral	AA	47.8934	somatic	0	0.76006614554989	0.573060665737679
1	228066228	228072442	1	loss	A	-1	somatic	0	0.0143373294190903	0.0367232430045282
1	228734233	228783945	2	neutral	AA	54.5678	somatic	0	0.61427726396099	0.22830346105513
1	229675654	229684975	1	loss	A	-1	germline	1	0.00271074960393867	0.00498018414717094
1	229793720	229803041	2	neutral	AA	100	somatic	0	0.162832297603019	0.316387957572875
1	234774241	234777348	3	gain	AAB	13.9183	germline	1	0.0832851197229448	0.270072548002787
1	234777348	234783562	6	gain	AAAABB	12.0151	germline	1	0.0143066006600845	0.0366321403858938
1	236094716	236097823	4	gain	AAAB	44.708	germline	1	0.0832706206096247	0.27004736704663
1	238449822	238465357	2	neutral	AA	54.568	somatic	0	0.91449176768092	0.583791820946925
1	238539925	238555460	2	neutral	AA	54.5693	somatic	0	0.984010916212994	0.800239566315114
1	240183528	240186635	4	gain	AABB	10.7942	germline	1	0.0832698575550415	0.270046041780624
2	388375	434980	2	neutral	AA	77.7917	somatic	0	0.245485983226698	0.544480181668196
2	1112306	1118520	2	neutral	AA	27.5232	somatic	0	0.872649846637971	0.946471421786188
2	2715518	2783872	2	neutral	AA	5.66834	somatic	0	0.282552854966694	0.520045765281063
2	3178461	3181568	6	gain	AAAABB	10.6431	germline	1	0.0832668053933506	0.270040740764073
2	3995602	4045314	2	neutral	AA	31.7863	somatic	0	0.463668305426519	0.671974780387578
2	4163380	4175808	1	loss	A	-1	germline	1	0.000536739948123759	0.000676431445411851
2	7248631	7261059	2	neutral	AA	36.405	somatic	0	0.982200015518207	0.995245131421536
2	9404889	9407996	4	gain	AABB	8.41471	somatic	0	0.0832729098073599	0.270051342873134
2	9407996	9522955	2	neutral	AA	100	somatic	0	0.209163514504212	0.157194691341868
2	10159890	10246886	2	neutral	AA	31.3976	somatic	0	0.333452605814321	0.364607076913146
2	11147916	11151023	2	neutral	AA	100	somatic	0	0.550791648472245	0.756912510236717
2	14242488	14270451	2	neutral	AA	36.3786	germline	1	0.865756633253124	0.920860039371951
2	17989530	18011279	3	gain	-	-1	germline	1	4.61046529627826e-06	1.67784006865901e-06
2	18294016	18297123	0	loss	-	-1	germline	1	0.08326527934649	0.270038090284281
2	34472165	34506342	1	loss	A	-1	germline	1	4.34155094724274e-08	4.14767964418417e-09
2	52520728	52558012	1	loss	A	-1	germline	1	4.43142920111676e-08	4.62558713554273e-09
2	89773658	89782979	6	gain	-	-1	germline	1	0.00269998246613312	0.0049577618890273
2	89782979	89792300	4	gain	-	-1	germline	1	0.0143079250144126	0.0366350410013713
2	89795407	89814049	5	gain	-	-1	germline	1	0.000107534860327745	9.08189588908481e-05
2	89814049	89817156	3	gain	-	-1	germline	1	0.0837003542158131	0.270792917722832
2	89817156	89823370	4	gain	-	-1	germline	1	0.0143078046140959	0.0366350410013713
2	89823370	89826477	6	gain	-	-1	germline	1	0.0832668053933506	0.270040740764073
2	89826477	89842012	26	gain	-	-1	germline	1	0.000107517941647681	9.08054765832444e-05
2	89842012	89851333	4	gain	-	-1	germline	1	0.00270046504951149	0.00495827714843955
2	91411047	91414154	5	gain	-	-1	germline	1	0.0832668053933506	0.270040740764073
2	109198622	109201729	11	gain	-	-1	germline	1	0.08326527934649	0.270038090284284
2	117040690	117046904	1	loss	A	-1	germline	1	0.014361833527164	0.0367992525381726
2	125684364	125693685	1	loss	A	-1	germline	1	0.00271244514526022	0.00498018414717094
2	132243241	132246348	4	gain	-	-1	somatic	0	0.0832698575550415	0.270046041780624
2	146103568	146119103	1	loss	A	-1	germline	1	0.00010806908638025	9.17311553885192e-05
2	172040804	172047018	1	loss	A	-1	germline	1	0.0143080454156229	0.0366372165948526
2	176399925	176409246	1	loss	A	-1	germline	1	0.0143398626155064	0.0367323278159153
2	207485460	207494781	1	loss	A	-1	germline	1	0.0027090330300236	0.00497708081116577
3	25694890	25757030	2	neutral	AA	100	somatic	0	0.250537889998453	0.389556863822266
3	25757030	25862668	2	neutral	AA	94.2073	somatic	0	0.530324075719821	0.925084456260411
3	32747780	32769529	2	neutral	AA	100	germline	1	0.119753680789817	0.0653796911439667
3	37936470	37945791	1	loss	A	-1	germline	1	0.00270529522004721	0.00496601193248714
3	40207687	40260506	2	neutral	AA	100	somatic	0	0.494020894749134	0.802124204632793
3	43233905	43283617	2	neutral	AA	27.2844	somatic	0	0.201528542588222	0.277568351852105
3	45548620	45554834	2	neutral	AA	100	germline	1	0.734394725760005	0.677325458699665
3	45999135	46064382	2	neutral	AA	100	somatic	0	0.000600938465971887	0.00179056716077808
3	47732841	47742162	2	neutral	AA	100	somatic	0	0.057932991726953	0.219718075528028
3	47835372	47878870	2	neutral	AA	54.5678	somatic	0	0.430739561058644	0.554646024293777
3	48133644	48146072	2	neutral	AA	100	somatic	0	0.142982837254082	0.162553781610825
3	68689556	68698877	0	loss	-	-1	germline	1	0.0143064802695987	0.0366325029518387
3	69211532	69217746	2	neutral	AA	100	somatic	0	0.0357852137565038	0.0645425122619913
3	75711376	75754874	2	neutral	AA	0.630641	germline	1	0.0219271403112034	0.0292379904531648
3	77777531	77786852	3	gain	AAB	1.16484	somatic	0	0.00305948353861474	0.00620501246067784
3	80303522	80334592	2	neutral	AA	100	somatic	0	0.258624388231042	0.54355031287373
3	81714100	81857022	2	neutral	AA	63.4519	somatic	0	0.727252120642361	0.888760939754142
3	84463795	84510400	2	neutral	AA	18.1893	somatic	0	0.617887758494351	0.960040815498263
3	87322235	87371947	2	neutral	AA	62.2363	somatic	0	0.697807636392695	0.915971420596955
3	90320490	90329811	3	gain	AAA	30.2403	germline	1	0.00270219861229306	0.00496313772250134
3	90329811	90510017	2	neutral	AA	2.12343	germline	1	1.07835667145424e-10	5.8591751561643e-08
3	90668474	90715079	1	loss	A	-1	germline	1	6.61569620262188e-10	1.1908141139827e-11
3	94539796	94605043	2	neutral	AA	36.3788	somatic	0	0.0596518700629047	0.158410526863565
3	95027595	95036916	1	loss	A	-1	germline	1	0.00272036312962207	0.00502545680424893
3	98687641	98693855	1	loss	A	-1	germline	1	0.0143090086574813	0.0366393923013746
3	99178547	99184761	1	loss	A	-1	germline	1	0.0143162347949558	0.0366586159524642
3	99228259	99231366	0	loss	-	-1	germline	1	0.08326527934649	0.270038090284281
3	100334351	100349886	2	neutral	AA	100	somatic	0	0.976301171377725	0.847898869468736
3	100620195	100641944	3	gain	AAB	28.5774	germline	1	4.60104416583745e-06	1.66608467577767e-06
3	100641944	100651265	3	gain	-	-1	germline	1	0.00270162796041246	0.00495967595715563
3	100651265	100725833	3	gain	AAA	33.6791	somatic	0	2.08462000421538e-15	0
3	110065475	110096545	2	neutral	AA	39.7222	somatic	0	0.894022244333268	0.951188353817897
3	117848510	117907543	2	neutral	AA	36.4139	somatic	0	0.481855056044773	0.319177895061902
3	118693614	118730898	2	neutral	AA	36.3793	somatic	0	0.106905213621229	0.0884807162156149
3	122884957	122903599	2	neutral	AA	100	somatic	0	0.223023445128934	0.348445365111829
3	131988467	131994681	1	loss	A	-1	somatic	0	0.014350602925846	0.036719609630414
3	141685414	141825229	2	neutral	AA	100	somatic	0	0.347628725261444	0.552185139991074
3	144018771	144056055	2	neutral	AA	28.0702	somatic	0	0.801930820445237	0.991263630043078
3	146075605	146100461	2	neutral	AA	100	somatic	0	0.31174698010344	0.249876705369435
3	152786725	152792939	2	neutral	AA	54.5679	somatic	0	0.190462408385206	0.368580418474186
3	158102802	158109016	2	neutral	AA	54.5873	somatic	0	0.727367070932769	0.932906560039254
3	162794372	162909331	1	loss	A	-1	germline	1	2.75352491123666e-25	0
3	169688805	169750945	2	neutral	AA	55.0709	somatic	0	0.0396526273200355	0.0549305455251502
3	182862485	182881127	2	neutral	AA	54.5874	somatic	0	0.678804351237488	0.463544505271041
3	191347702	191353916	1	loss	A	-1	germline	1	0.0143434821523785	0.0367098010911906
3	193155976	193168404	1	loss	A	-1	germline	1	0.0143149097621537	0.0366575275857032
3	197384603	197390817	3	gain	AAB	2.09986	somatic	0	0.0143182827857274	0.0366535371494513
4	127387	133601	1	loss	A	-1	germline	1	0.0143347966174108	0.0367098010911906
4	553046	556153	3	gain	-	-1	germline	1	0.0832759621503077	0.270056644041606
4	10209602	10234458	1	loss	A	-1	germline	1	9.99332351715243e-07	2.61559249814525e-07
4	40294683	40297790	4	gain	-	-1	germline	1	0.0832706206096247	0.27004736704663
4	49146526	49155847	82	gain	-	-1	germline	1	0.0143061191035034	0.0366314152634218
4	49652967	49656074	13	gain	-	-1	germline	1	0.08326527934649	0.270038090284284
4	68518671	68621202	1	loss	A	-1	germline	1	4.58439440491245e-16	0
4	114253711	114259925	1	loss	A	-1	germline	1	0.0143585722316738	0.0367454133985113
4	165081124	165084231	0	loss	-	-1	germline	1	0.08326527934649	0.270038090284281
4	172509961	172513068	0	loss	-	-1	germline	1	0.08326527934649	0.270038090284281
5	413231	416338	3	gain	AAB	7.61345	germline	1	0.0832759621503077	0.270056644041606
5	416338	428766	2	neutral	AA	24.0524	somatic	0	0.57107089399563	0.694043594891748
5	1177553	1180660	1	loss	A	-1	somatic	0	0.0835127945564568	0.270467715679925
5	3321383	3333811	2	neutral	AA	16.4563	somatic	0	0.146538164241352	0.272411864125591
5	3793647	3806075	2	neutral	AA	59.3479	somatic	0	0.19372952888816	0.524761992444101
5	6170502	6186037	1	loss	A	-1	germline	1	0.000108366107484374	9.24141530848077e-05
5	7587294	7748858	2	neutral	AA	11.649	somatic	0	0.485727795658228	0.498531020582597
5	16411174	16417388	2	neutral	AA	100	somatic	0	0.273747816566018	0.296140462296021
5	16998397	17013932	2	neutral	AA	36.7559	somatic	0	0.291734649899782	0.442560528351181
5	18651321	18660642	2	neutral	AA	100	somatic	0	0.789670058561457	0.895921397020443
5	19257186	19260293	2	neutral	AA	100	somatic	0	0.286346498254549	0.531572908046044
5	30504526	30516954	2	neutral	AA	70.3098	somatic	0	0.963233764031906	0.936982412674427
5	34472165	34497021	2	neutral	AA	100	somatic	0	0.487875798525442	0.529255663380614
5	36205871	36236941	2	neutral	AA	100	somatic	0	0.0626082760703356	0.0595657730472852
5	36485501	36501036	2	neutral	AA	30.9269	somatic	0	0.19016996332436	0.325662346098846
5	36603567	36628423	2	neutral	AA	100	somatic	0	0.450178439840979	0.702829485667698
5	36967086	36970193	2	neutral	AA	100	somatic	0	0.231037132974623	0.471820989331436
5	43348864	43358185	2	neutral	AA	100	somatic	0	0.705920704722523	0.942988740448752
5	45004895	45014216	1	loss	A	-1	germline	1	0.00270397711851332	0.00496446409142237
5	45371521	45377735	1	loss	A	-1	germline	1	0.0143460163076544	0.0367472311630433
5	46269444	46272551	1	loss	A	-1	germline	1	0.0832668053933506	0.270040740764071
5	46319156	46393724	2	neutral	AA	6.89814	somatic	0	6.00043068894489e-06	0.000138565629439147
5	46403045	46406152	2	neutral	AA	100	somatic	0	0.127843527761126	0.340494134866206
5	46406152	46409259	0	loss	-	-1	germline	1	0.08326527934649	0.270038090284281
5	46434115	49656074	2	neutral	AA	-1	somatic	0	NA	NA
5	49656074	49659181	211	gain	-	-1	germline	1	0.08326527934649	0.270038090284284
5	49659181	50153194	2	neutral	AA	-1	somatic	0	NA	NA
5	50153194	50249511	2	neutral	AA	3.75676	germline	1	6.10086284482662e-07	5.40711217245082e-06
5	50566425	50749738	2	neutral	AA	70.99	somatic	0	0.0159288134087232	0.0106954466595588
5	50939265	50945479	1	loss	A	-1	somatic	0	0.0146613600421561	0.0376942677041262
5	51905542	52045357	2	neutral	AA	100	somatic	0	0.778834761752644	0.46621996939063
5	58026332	58038760	1	loss	A	-1	germline	1	0.0143064802695987	0.0366321403858932
5	60191911	60201232	1	loss	A	-1	germline	1	0.00272142340068889	0.00501354565862233
5	60415615	60477755	3	gain	AAB	2.63237	germline	1	4.28972651257087e-12	2.56461518688411e-14
5	72619911	72812545	2	neutral	AA	36.4386	somatic	0	0.00305773948039029	0.00914757278977751
5	77156131	77190308	2	neutral	AA	100	somatic	0	0.506227460911388	0.412168089417886
5	78408252	78430001	2	neutral	AA	100	somatic	0	0.104757444199964	0.43355955705171
5	84650215	84659536	1	loss	A	-1	germline	1	0.0144201637324563	0.0369750721466794
5	85324434	85333755	2	neutral	AA	100	somatic	0	0.743417369481829	0.925744484543523
5	90336025	90407486	2	neutral	AA	100	somatic	0	0.4353973820118	0.752096033817309
5	98799493	98808814	2	neutral	AA	70.2025	somatic	0	0.467692551406803	0.514334315436527
5	101086245	101213632	2	neutral	AA	100	somatic	0	0.161607753942935	0.289660640185678
5	101216739	101309949	2	neutral	AA	27.5365	somatic	0	0.27225559630881	0.353478688299002
5	106986438	106992652	1	loss	A	-1	somatic	0	0.0145730214212209	0.0373967910145361
5	112703318	112945664	2	neutral	AA	100	somatic	0	0.0725553295456192	0.0336573424033658
5	116105483	116161409	2	neutral	AA	27.8089	somatic	0	0.0633530530511713	0.18631936399259
5	117037583	117056225	2	neutral	AA	100	germline	1	0.450978317168745	0.456755372669318
5	118538264	118541371	0	loss	-	-1	somatic	0	0.0832660423670883	0.270039415521802
5	131845545	131851759	2	neutral	AA	100	somatic	0	0.555238926671472	0.785390022034654
5	133579251	133628963	2	neutral	AA	36.5139	somatic	0	0.529119623237818	0.458548293483755
5	137518927	137525141	1	loss	A	-1	somatic	0	0.0163410029739506	0.042820142329572
5	139380020	139386234	2	neutral	AA	100	somatic	0	0.606910050205365	0.894495515143008
5	142990354	143117741	2	neutral	AA	100	somatic	0	0.862023724150995	0.764758074542594
5	145740049	145743156	5	gain	-	-1	somatic	0	0.0832683314628677	0.270043391262854
5	146510585	146519906	2	neutral	AA	54.5678	somatic	0	0.723942239308445	0.876353715987822
5	155558169	155583025	2	neutral	AA	46.6861	somatic	0	0.66108087599147	0.762543434252678
5	160240418	160243525	2	neutral	AA	100	somatic	0	0.164093927359664	0.390430859475826
5	164124168	164130382	2	neutral	AA	100	somatic	0	0.921184254262526	0.947618650099494
5	167691004	167697218	3	gain	AAB	22.6822	somatic	0	0.01433931975447	0.0367210629423186
5	174905458	174930314	2	neutral	AA	54.5678	somatic	0	0.784168982910837	0.675451027650566
5	175853093	175862414	2	neutral	AA	100	somatic	0	0.382347781167593	0.563845129764541
5	176654699	176660913	2	neutral	AA	55.0709	germline	1	0.462136979951841	0.758029894558963
5	178298302	178304516	2	neutral	AA	18.0828	somatic	0	0.538657110566458	0.751912078194632
5	178584146	178587253	7	gain	AAAAABB	99.967	germline	1	0.0832660423670883	0.270039415521805
5	180908182	180945466	2	neutral	AA	33.1939	germline	1	0.757959050064455	0.862653442791432
5	181032462	181044890	2	neutral	AA	77.0171	somatic	0	0.5814779197045	0.542890751873283
5	181044890	181047997	4	gain	AABB	100	germline	1	0.083274435967505	0.270053993447875
6	257881	382161	4	gain	AABB	2.33904	germline	1	5.94482820434233e-26	0
6	9867832	9892688	2	neutral	AA	100	somatic	0	0.616883869728244	0.680890552103257
6	17374344	17383665	2	neutral	AA	100	somatic	0	0.00312147484242049	0.00602874515269192
6	18937165	19005519	2	neutral	AA	24.027	somatic	0	0.887942109433722	0.790481182405165
6	20332208	20372599	2	neutral	AA	61.8637	somatic	0	0.297655206635549	0.82898292632754
6	32486792	32589323	0	loss	-	-1	germline	1	9.13122286244443e-11	1.3837819778928e-12
6	32589323	32666998	1	loss	A	-1	germline	1	1.07954070166042e-06	3.98836987103302e-07
6	33968831	33975045	0	loss	-	-1	germline	1	0.0143068414437371	0.0366335906685137
6	35659039	35662146	0	loss	-	-1	germline	1	0.08326527934649	0.270038090284281
6	35786426	35798854	3	gain	AAB	3.3436	germline	1	0.000533208275946188	0.000672241299240706
6	42419871	42494439	2	neutral	AA	36.1582	somatic	0	0.406689635570827	0.579791284562241
6	49068851	49516259	2	neutral	AA	100	somatic	0	0.0332476954133399	0.226768946628616
6	50084840	50103482	2	neutral	AA	100	somatic	0	0.206841405316063	0.0924995826211833
6	51803011	51815439	2	neutral	AA	100	somatic	0	0.331864635564583	0.424390371908171
6	54061800	54071121	1	loss	A	-1	germline	1	0.0143648538277502	0.0368076256239712
6	60232302	60238516	3	gain	-	-1	germline	1	0.0143105740475054	0.0366401175620035
6	60238516	60241623	5	gain	-	-1	germline	1	0.0832668053933506	0.270040740764073
6	64246546	64293151	2	neutral	AA	60.3193	somatic	0	0.464533536769636	0.556117114072084
6	73903102	73912423	1	loss	A	-1	germline	1	0.014315632493907	0.036660067152124
6	94095495	94101709	2	neutral	AA	100	somatic	0	0.111000213915803	0.333491637086327
6	95307225	95316546	1	loss	A	-1	germline	1	0.00271471472209994	0.00499224485253913
6	96146115	96208255	2	neutral	AA	100	somatic	0	0.787919103103136	0.75106102663416
6	103289108	103313964	1	loss	A	-1	germline	1	4.63033137746689e-06	1.67487924318532e-06
6	105084954	105091168	2	neutral	AA	100	somatic	0	0.415610845795488	0.340793414750482
6	113837373	113849801	2	neutral	AA	100	somatic	0	0.215868474394491	0.199742042575031
6	123344793	123382077	2	neutral	AA	100	somatic	0	0.235723752264974	0.371713879272629
6	136866457	136919276	2	neutral	AA	54.5678	germline	1	0.233615537941458	0.680091447083189
6	142629942	142636156	1	loss	A	-1	somatic	0	0.0143386562822653	0.0367116173143858
6	154247015	154253229	2	neutral	AA	100	somatic	0	0.538365922963258	0.87882355614157
6	157313624	157316731	4	gain	AABB	20.2257	germline	1	0.0832721467357839	0.270050017592885
6	160252846	160274595	2	neutral	AA	54.5678	germline	1	0.788752313056988	0.851566926712466
6	165311042	165320363	0	loss	-	-1	germline	1	0.0143099719565426	0.0366430187301245
6	167513905	167591580	2	neutral	AA	13.8752	somatic	0	0.0259622380609265	0.0652968250492518
6	169281788	169663949	2	neutral	AA	11.3897	somatic	0	0.000687065246933018	0.00318174382749492
6	170145534	170148641	4	gain	AABB	15.3331	germline	1	0.0832729098073599	0.270051342873134
6	170167283	170170390	3	gain	AAB	3.52816	germline	1	0.0832759621503077	0.270056644041606
7	9762194	9765301	0	loss	-	-1	germline	1	0.08326527934649	0.270038090284281
7	57485714	57498142	3	gain	-	-1	germline	1	0.000532359492247057	0.00067127064926098
7	61046336	61052550	4	gain	-	-1	somatic	0	0.0143086474350811	0.0366364913844661
7	61052550	61099155	3	gain	-	-1	somatic	0	4.57339937277665e-05	0.000188128902641971
7	61099155	61962901	2	neutral	AA	2.80283	germline	1	1.45803916631226e-06	0.000125949161647321
7	62295350	62357490	3	gain	AAB	0.447067	germline	1	6.92303514805926e-10	2.36664576824808e-10
7	62400988	62407202	5	gain	-	-1	germline	1	0.0143068414437371	0.0366325029518393
7	62438272	62456914	3	gain	AAB	3.77744	germline	1	2.32656339337111e-05	1.36239015831041e-05
7	62519054	62596729	2	neutral	AA	2.84878	somatic	0	0.0131287739162286	0.0578355863816039
7	65225251	65228358	4	gain	AABB	73.7676	somatic	0	0.0832729098073599	0.270051342873134
7	74412650	74418864	1	loss	A	-1	somatic	0	0.0143256335860395	0.0366869234134062
7	90180675	90183782	0	loss	-	-1	somatic	0	0.08326527934649	0.270038090284281
7	100949537	100955751	3	gain	AAB	13.0481	germline	1	0.0143100923729474	0.0366397549301193
7	100955751	100958858	14	gain	AAAAAAAAAAAAAB	3.7625	germline	1	0.08326527934649	0.270038090284284
7	100958858	100974393	3	gain	AAB	0.648235	germline	1	0.000107649973987615	9.09741421747379e-05
7	114318958	114328279	2	neutral	AA	100	somatic	0	0.213549022299922	0.636296059460944
7	116291903	116301224	1	loss	A	-1	somatic	0	0.00270569076497819	0.00496888766814008
7	118606618	118684293	2	neutral	AA	100	somatic	0	0.726021232022263	0.797680446518462
7	134101227	134113655	1	loss	A	-1	germline	1	0.000532707341172897	0.000671975236956168
7	143847886	143850993	4	gain	AAAB	74.1318	germline	1	0.0832698575550415	0.270046041780624
7	152401457	152407671	10	gain	AAAAAAAABB	3.64102	germline	1	0.0143061191035034	0.0366314152634218
7	155937223	155965186	2	neutral	AA	100	germline	1	0.30348416423425	0.358846127515901
7	158149407	158152514	4	gain	AABB	14.4209	germline	1	0.0832698575550415	0.270046041780624
7	158593708	158596815	5	gain	AAABB	69.0903	germline	1	0.0832668053933506	0.270040740764073
8	643149	649363	1	loss	A	-1	germline	1	0.0143985984149016	0.0368753996629715
8	4731961	4744389	2	neutral	AA	54.5678	somatic	0	0.203397183853229	0.342257080735662
8	5735522	5747950	1	loss	A	-1	germline	1	0.000537274355134883	0.000683032658848726
8	6111469	6114576	0	loss	-	-1	germline	1	0.08326527934649	0.270038090284281
8	16342820	16352141	1	loss	A	-1	germline	1	0.00274881115964002	0.00509369606359722
8	16404960	16417388	1	loss	A	-1	germline	1	0.000533182794098303	0.00067218807888425
8	25113881	25132523	1	loss	A	-1	germline	1	2.21578711844103e-05	1.23440064175862e-05
8	25210198	25213305	0	loss	-	-1	germline	1	0.08326527934649	0.270038090284281
8	31943067	31955495	2	neutral	AA	100	somatic	0	0.437342655515301	0.420312017999723
8	32822348	32834776	0	loss	-	-1	germline	1	0.0143063598800066	0.0366321403858932
8	39375011	39527254	1	loss	A	-1	germline	1	3.38836541322729e-31	0
8	43237012	43240119	5	gain	AAABB	1.46606	germline	1	0.0832683314628677	0.270043391262854
8	46493148	46496255	1	loss	A	-1	germline	1	0.0832713836698722	0.270048692317381
8	50119017	50125231	1	loss	A	-1	germline	1	0.0143234641512853	0.0366618812223805
8	55205176	55223818	2	neutral	AA	21.8272	somatic	0	0.661540945389522	0.824730323479004
8	71302543	71305650	0	loss	-	-1	germline	1	0.08326527934649	0.270038090284281
8	80350127	80371876	2	neutral	AA	54.6128	germline	1	0.128995311492379	0.419335939342635
8	81897413	81993730	2	neutral	AA	19.9551	somatic	0	0.0475045677794764	0.0499772289055179
8	94104816	94151421	2	neutral	AA	100	somatic	0	0.340077579452486	0.57939901794147
8	103369890	103444458	2	neutral	AA	65.1435	somatic	0	0.548290830900099	0.60728788118013
8	104140426	104283348	2	neutral	AA	100	somatic	0	0.969203866059681	0.966894216545397
8	105019707	105044563	2	neutral	AA	36.4871	somatic	0	0.334704811870419	0.407583874137465
8	106072980	106079194	2	neutral	AA	100	somatic	0	0.66651376009706	0.777624383342586
8	109117840	109273190	2	neutral	AA	100	somatic	0	0.416060599927719	0.719863244173199
8	110932328	111056608	2	neutral	AA	89.1627	somatic	0	0.28245863990318	0.514340798958934
8	111280312	111286526	1	loss	A	-1	germline	1	0.0143378119022586	0.0366832931833336
8	111286526	111426341	2	neutral	AA	25.2576	somatic	0	0.046813431072051	0.0603181372100189
8	114623444	114629658	1	loss	A	-1	germline	1	0.0143181623085285	0.0366495470932593
8	115530688	115536902	2	neutral	AA	100	somatic	0	0.0292938475179485	0.084048111631296
8	118143675	118152996	2	neutral	AA	100	somatic	0	0.248242611131081	0.58041546497287
8	131351532	131469598	2	neutral	AA	56.5199	somatic	0	0.730668440600053	0.675527550355457
8	136667609	136850922	1	loss	A	-1	germline	1	1.0303063755459e-39	0
8	140632141	140653890	2	neutral	AA	45.9605	somatic	0	0.151678171038887	0.138513531394276
8	143621075	143630396	1	loss	A	-1	germline	1	0.00270630616213063	0.00496918270167912
8	144124409	144127516	5	gain	AAABB	100	germline	1	0.0832668053933506	0.270040740764073
8	144363648	144407146	2	neutral	AA	100	somatic	0	0.327204224570979	0.272178683014587
9	24501802	24517337	1	loss	A	-1	germline	1	0.000107807597104011	9.10304301455778e-05
9	40912976	40916083	7	gain	-	-1	germline	1	0.0832660423670883	0.270039415521805
9	40922297	40928511	6	gain	-	-1	germline	1	0.0143064802695987	0.0366321403858938
9	65073008	65076115	3	gain	-	-1	somatic	0	0.083283593404192	0.270069897295115
9	71125444	71128551	2	neutral	AA	100	somatic	0	0.774696983588425	0.88648287061628
9	81350581	81356795	1	loss	A	-1	somatic	0	0.0144682427130376	0.0371193372346085
9	86539271	86542378	1	loss	A	-1	somatic	0	0.083284356560736	0.270071222646575
9	86567234	86601411	2	neutral	AA	100	germline	1	0.985874377559294	0.736151891240359
9	88151804	88167339	2	neutral	AA	54.6583	somatic	0	0.638087539463366	0.97228139130805
9	88266763	88279191	2	neutral	AA	100	somatic	0	0.518989282505015	0.849547883938506
9	90901499	90913927	2	neutral	AA	65.5731	somatic	0	0.0478043178914644	0.226428265171253
9	95260620	95263727	2	neutral	AA	100	somatic	0	0.497291931374424	0.718016798379704
9	102260691	102263798	2	neutral	AA	100	somatic	0	0.696626651558295	0.847270366716437
9	105035242	105041456	1	loss	A	-1	germline	1	0.0143235846678351	0.0366771225134762
9	105920737	105930058	2	neutral	AA	100	germline	1	0.584582175162339	0.368764120358312
9	110261216	110267430	1	loss	A	-1	germline	1	0.0143576060473535	0.0367817836392859
9	126082060	126110023	2	neutral	AA	100	somatic	0	0.00527642948817558	0.00962981830250298
9	126911629	127001732	2	neutral	AA	100	somatic	0	0.598345862684101	0.880239540519931
9	127964902	127986651	2	neutral	AA	54.5678	somatic	0	0.404166808885252	0.680867593877723
9	128055005	128129573	2	neutral	AA	32.3759	somatic	0	0.581613346707271	0.776510972953114
9	129276056	129279163	2	neutral	AA	100	somatic	0	0.978756641175682	0.958815219319573
9	129425192	129443834	3	gain	AAB	0.222536	germline	1	2.22582153945334e-05	1.24562631171887e-05
9	130264082	130279617	2	neutral	AA	16.3944	somatic	0	0.609194625431032	0.720553798483615
9	131174433	131177540	2	neutral	AA	100	somatic	0	0.589812355339392	0.783268495607141
9	134710199	134716413	2	neutral	AA	11.117	somatic	0	0.252959851966278	0.734776082395396
9	134986722	134992936	2	neutral	AA	20.7321	somatic	0	0.76243655534343	0.748414857903312
9	135322278	135325385	1	loss	A	-1	somatic	0	0.0832820671080983	0.27006724660643
9	136583720	136586827	2	neutral	AA	100	somatic	0	0.692759296517471	0.84513828231924
9	137326293	137329400	4	gain	AABB	100	germline	1	0.0832729098073599	0.270051342873134
9	137714668	137717775	4	gain	AAAA	15.1449	germline	1	0.0832721467357839	0.270050017592885
9	137717775	137739524	2	neutral	AA	13.3377	somatic	0	0.1391835733867	0.303274624362751
10	798499	1050166	2	neutral	AA	67.9998	somatic	0	0.194161732082576	0.153810587697496
10	5368896	5384431	2	neutral	AA	20.0835	somatic	0	0.0793753627644872	0.1415498584068
10	6835400	6838507	1	loss	A	-1	germline	1	0.0832698575550415	0.270046041780621
10	7904208	7969455	2	neutral	AA	54.5679	somatic	0	0.947150948909516	0.540005354827253
10	8920197	8935732	2	neutral	AA	32.3587	somatic	0	0.2181295508155	0.0710557449522785
10	9811906	9846083	2	neutral	AA	100	somatic	0	0.101025539245905	0.089838097930431
10	10492339	10495446	2	neutral	AA	100	somatic	0	0.103642195792437	0.303814165334862
10	12390716	12415572	2	neutral	AA	36.6396	somatic	0	0.0524717608579193	0.129618585518034
10	15982408	16044548	2	neutral	AA	100	somatic	0	0.152013451040163	0.199566355237428
10	17902534	17905641	2	neutral	AA	100	somatic	0	0.312759851490784	0.558202454541395
10	19400108	19403215	2	neutral	AA	100	somatic	0	0.77319246029998	0.885733486064485
10	20636694	20698834	2	neutral	AA	100	somatic	0	0.113809214263844	0.166959622764977
10	21093423	21099637	2	neutral	AA	54.5678	somatic	0	0.911463317945902	0.982842367349729
10	21714823	21727251	2	neutral	AA	62.2133	somatic	0	0.439257752519173	0.611333683932644
10	25871989	26033553	2	neutral	AA	100	somatic	0	0.706480722635501	0.861301569694574
10	26567957	26658060	2	neutral	AA	0.725238	somatic	0	0.316529204958733	0.152806702382522
10	26707772	26713986	1	loss	A	-1	germline	1	0.0144208911492853	0.0369768998453037
10	28404194	28407301	2	neutral	AA	100	somatic	0	0.823034035250688	0.907469052676436
10	30429958	30433065	2	neutral	AA	100	somatic	0	0.90288211310782	0.936878257941223
10	36606674	36643958	2	neutral	AA	30.0052	somatic	0	0.0603673122322886	0.0921266343365635
10	37141078	37150399	2	neutral	AA	1.70674	somatic	0	0.332174662301805	0.786300916926254
10	38486409	38526800	3	gain	AAB	0.425359	germline	1	4.96154463502572e-10	1.86090032272546e-11
10	38526800	38529907	17	gain	AAAAAAAAAAAAAAAAB	1.96896	germline	1	0.08326527934649	0.270038090284284
10	38573405	38582726	4	gain	AAAB	15.4602	germline	1	0.00270081606874464	0.00495945506857509
10	39558324	39561431	0	loss	-	-1	germline	1	0.08326527934649	0.270038090284281
10	41829541	41841969	2	neutral	AA	13.5798	germline	1	0.00179203007680409	0.00302638212345807
10	41857504	41897895	29	gain	AAAAAAAAAAAAAAAAAAAABBBBBBBBB	8.1636	germline	1	0.000532028807989619	0.000670951818562471
10	42298698	42323554	3	gain	AAB	1.69165	germline	1	1.00014836420883e-06	2.61837669324194e-07
10	43370613	43392362	2	neutral	AA	54.5679	somatic	0	0.249866271664485	0.50815294580456
10	46514897	46561502	4	gain	AABB	0.370059	germline	1	4.24298917809573e-10	1.02290398373839e-11
10	47316503	47381750	2	neutral	AA	1.81815	germline	1	0.138742071860022	0.381236674418387
10	53378260	53381367	1	loss	A	-1	somatic	0	0.0836651129479074	0.270731837643032
10	54012088	54046265	2	neutral	AA	39.6732	somatic	0	0.195717677133023	0.0433865250857414
10	54502994	54580669	2	neutral	AA	70.8261	germline	1	0.417119510273448	0.393779838688835
10	57954871	58069830	2	neutral	AA	100	somatic	0	0.26129998146837	0.0945257279268802
10	59812857	59834606	2	neutral	AA	55.5789	somatic	0	0.236863181082032	0.737643677519457
10	62416523	62419630	2	neutral	AA	100	somatic	0	0.971112547226815	0.956871230157695
10	64255867	64262081	2	neutral	AA	100	somatic	0	0.828823071615541	0.925418786745215
10	65545272	65554593	1	loss	A	-1	somatic	0	0.00273575186249099	0.00506629911399392
10	67101879	67123628	2	neutral	AA	54.6178	somatic	0	0.668085521958044	0.737071769238982
10	67384616	67409472	2	neutral	AA	54.5678	somatic	0	0.0869172361781002	0.169376042100886
10	67894164	67906592	2	neutral	AA	36.3907	somatic	0	0.331855559661561	0.284201618778581
10	70500937	70510258	2	neutral	AA	54.5678	germline	1	0.539058875607116	0.454132300092319
10	77979486	77995021	2	neutral	AA	60.3028	somatic	0	0.14947444383372	0.162808279603254
10	79483274	79501916	2	neutral	AA	100	somatic	0	0.423093804112824	0.88200792259604
10	85430072	85433179	2	neutral	AA	100	somatic	0	0.159222289938013	0.384013047400088
10	92921049	92970761	2	neutral	AA	36.439	somatic	0	0.161886353627681	0.635854673789586
10	93399527	93402634	2	neutral	AA	100	somatic	0	0.919571318468483	0.942207188421889
10	97118606	97165211	2	neutral	AA	100	somatic	0	0.392802244590672	0.650479962775586
10	97600191	97609512	2	neutral	AA	100	somatic	0	0.763623163413445	0.840137850204748
10	99063588	99094658	2	neutral	AA	100	somatic	0	0.981864433213722	0.82165337919249
10	102444004	102450218	2	neutral	AA	36.4085	somatic	0	0.128967317301189	0.388549471433638
10	102558963	102574498	2	neutral	AA	37.1471	somatic	0	0.0929322907814215	0.0875253146160829
10	102608675	102617996	2	neutral	AA	54.5678	somatic	0	0.160201464652245	0.408651447999915
10	103248717	103251824	3	gain	AAB	89.664	somatic	0	0.0832881724284277	0.270077849475104
10	108651790	108658004	2	neutral	AA	55.1581	somatic	0	0.710799032286262	0.722178390037075
10	116792130	116854270	2	neutral	AA	54.5679	somatic	0	0.306827457709064	0.390012985814529
10	121601766	121604873	2	neutral	AA	100	somatic	0	0.564891703559222	0.766607003893903
10	122449977	122484154	2	neutral	AA	36.5487	somatic	0	0.772644036306922	0.831254005577347
10	125783788	126019920	2	neutral	AA	26.2544	somatic	0	0.109271299257654	0.323688338023772
10	128462022	128465129	8	gain	AAAAAAAA	100	germline	1	0.08326527934649	0.270038090284284
10	129285377	129313340	2	neutral	AA	100	somatic	0	0.603636754115814	0.798738769623506
10	131621841	131624948	0	loss	-	-1	somatic	0	0.0832660423670883	0.270039415521802
11	18924737	18940272	1	loss	A	-1	germline	1	0.000108022348019633	9.11160512295783e-05
11	42948061	42951168	4	gain	-	-1	germline	1	0.0832713836698722	0.270048692317384
11	54754661	54779517	1	loss	A	-1	germline	1	5.53943669978014e-06	2.56291221500948e-06
11	55118180	55124394	1	loss	A	-1	germline	1	0.014349033674086	0.0367137968859903
11	55183427	55214497	1	loss	A	-1	germline	1	4.67830885730692e-06	1.74240079575672e-06
11	63426298	63429405	3	gain	AAB	47.2089	somatic	0	0.0832767252502056	0.270057969345592
11	68496922	68984721	2	neutral	AA	5.32152	somatic	0	0.161249699236137	0.227177869755064
11	77177880	77202736	2	neutral	AA	11.2002	somatic	0	0.0141841467935523	0.0323077339643004
11	78563602	78572923	2	neutral	AA	100	somatic	0	0.304524389499168	0.476411431080729
11	81729635	81860129	2	neutral	AA	20.1427	germline	1	0.170254382344021	0.584699649653704
11	82145973	82152187	1	loss	A	-1	germline	1	0.0143288882816247	0.0366952741353936
11	84056778	84271161	2	neutral	AA	34.7603	somatic	0	0.111156803949717	0.29281581112359
11	90985388	91159380	2	neutral	AA	30.2356	somatic	0	0.156585216529598	0.25470815090417
11	107449381	107452488	3	gain	AAB	72.1975	germline	1	0.0832935148811225	0.270087127234443
11	107452488	107455595	3	gain	-	-1	germline	1	0.0833087805612858	0.270113636400137
11	107455595	108163991	3	gain	AAB	0.178465	germline	1	3.70853420390502e-148	0
11	108163991	108167098	2	neutral	AA	93.0713	somatic	0	0.116931999665945	0.324345928294646
11	118115712	118146782	2	neutral	AA	54.5679	somatic	0	0.0466544546885538	0.135268185228602
11	118435733	118479231	2	neutral	AA	100	somatic	0	0.624964828396664	0.537414687387441
11	120212937	120290612	2	neutral	AA	100	germline	1	0.894258418648308	0.852487864317811
11	120290612	120362073	2	neutral	AA	24.5638	somatic	0	0.502399304931278	0.838701651229638
11	121129502	121210284	2	neutral	AA	15.6218	somatic	0	0.0353592028226324	0.0365528705988811
11	121477486	121486807	2	neutral	AA	54.5679	somatic	0	0.546514630922563	0.793814034292244
11	123236048	123248476	2	neutral	AA	36.411	somatic	0	0.724093892354404	0.81267745419993
11	126448686	126454900	2	neutral	AA	37.3421	somatic	0	0.464559567223393	0.794820073832635
11	129095850	129130027	2	neutral	AA	100	germline	1	0.587267186500316	0.489970528921306
11	131264536	131267643	1	loss	A	-1	germline	1	0.083303437315453	0.270104357976122
12	879281	891709	2	neutral	AA	100	somatic	0	0.445139789664637	0.633242680720735
12	2255682	2258789	11	gain	AAAAAAABBBB	100	germline	1	0.08326527934649	0.270038090284284
12	8454147	8606390	2	neutral	AA	22.0272	somatic	0	0.256534661599281	0.224074276973157
12	9867832	9898902	2	neutral	AA	21.8296	somatic	0	0.519694756915029	0.439214264409564
12	16317964	16352141	2	neutral	AA	100	somatic	0	0.115278648894258	0.203773351251801
12	18095168	18101382	1	loss	A	-1	somatic	0	0.0146495543515146	0.0376611954639692
12	30324320	30327427	1	loss	A	-1	germline	1	0.0832660423670883	0.270039415521802
12	33148583	33154797	1	loss	A	-1	germline	1	0.0143199695604075	0.0366589787476671
12	34677227	34689655	2	neutral	AA	2.96271	somatic	0	0.0193343845042202	0.0533484547258188
12	34689655	34695869	1	loss	A	-1	somatic	0	0.0439621133025028	0.133618915049145
12	37616449	37625770	1	loss	A	-1	germline	1	0.00271345852835839	0.0049815886198491
12	39710567	39713674	1	loss	A	-1	germline	1	0.0832660423670883	0.270039415521802
12	45508229	45517550	1	loss	A	-1	germline	1	0.00275069575735895	0.00510094422060836
12	50964121	50995191	2	neutral	AA	100	somatic	0	0.840264112640402	0.679999230038559
12	59542548	59551869	1	loss	A	-1	germline	1	0.00270164990652536	0.00496129608232276
12	60126664	60132878	1	loss	A	-1	germline	1	0.014312139588593	0.0366488216693279
12	67642497	67667353	2	neutral	AA	85.1066	somatic	0	0.680181858030403	0.930049255127455
12	71206226	71212440	1	loss	A	-1	somatic	0	0.014493552900108	0.0371215379647284
12	71961227	71964334	1	loss	A	-1	germline	1	0.0832904620170213	0.27008182562919
12	79762904	79769118	3	gain	AAA	100	somatic	0	0.014328406063347	0.036674944846832
12	86483345	86545485	2	neutral	AA	100	somatic	0	0.416388480917998	0.296612015462529
12	87468264	87471371	2	neutral	AA	100	somatic	0	0.291605830018141	0.536967672839466
12	93480309	93514486	2	neutral	AA	55.9063	germline	1	0.575588118389807	0.662238571475068
12	94800784	94853603	2	neutral	AA	100	somatic	0	0.699398973905588	0.943653802329279
12	99908692	100054721	2	neutral	AA	100	somatic	0	0.635424364385188	0.347321089636782
12	102319724	102444004	2	neutral	AA	25.3724	somatic	0	0.0198011083214019	0.0345751034021643
12	110907472	111208851	2	neutral	AA	100	somatic	0	1.96394040022083e-06	8.0103036113166e-05
12	114719761	114744617	2	neutral	AA	100	somatic	0	0.236479499418766	0.267312823994294
12	118665651	118678079	2	neutral	AA	100	somatic	0	0.89448528425419	0.969696155608612
12	120778411	120989687	2	neutral	AA	100	somatic	0	0.00703607654187759	0.0185724278560518
12	126818419	126833954	2	neutral	AA	45.3679	germline	1	0.297069376407671	0.492331364344961
13	18231876	18234983	1	loss	A	-1	germline	1	0.0833775041702285	0.270232951147388
13	21152456	21155563	3	gain	AAB	9.9564	somatic	0	0.0832965678358651	0.270092428915656
13	22019309	22022416	0	loss	-	-1	germline	1	0.08326527934649	0.270038090284281
13	24672687	24685115	2	neutral	AA	15.5928	somatic	0	0.241124719949181	0.498070788756057
13	31958602	31964816	1	loss	A	-1	germline	1	0.0143497579253201	0.0367145234350158
13	33561814	33571135	1	loss	A	-1	germline	1	0.00271773616844065	0.00498713613663715
13	37498383	37510811	1	loss	A	-1	germline	1	0.000532821923135619	0.000671935336129192
13	43370613	43619173	2	neutral	AA	8.92382	somatic	0	0.252689677136229	0.160309487308031
13	48960106	48963213	0	loss	-	-1	germline	1	0.08326527934649	0.270038090284281
13	50494964	50501178	1	loss	A	-1	germline	1	0.0143215360081308	0.0366582531604026
13	63034816	63044137	3	gain	AAB	0.827486	germline	1	0.00270283523855677	0.00496512739772037
13	63044137	63050351	2	neutral	AA	28.2549	somatic	0	0.534179006106313	0.81694633861436
13	63050351	63059672	3	gain	AAB	0.871948	germline	1	0.00470731313617131	0.0134063697809179
13	63059672	63068993	4	gain	AAAB	2.63794	germline	1	0.00270046504951149	0.00495835076093409
13	71902194	71908408	1	loss	A	-1	germline	1	0.0143518101455897	0.0367683229814081
13	82590274	82605809	1	loss	A	-1	germline	1	0.000746930737357037	0.00153481311083281
13	89438102	89857547	2	neutral	AA	100	somatic	0	0.00106263841587705	0.0146465001654527
13	94138993	94145207	2	neutral	AA	100	somatic	0	0.218565849033598	0.622456020437744
13	98600645	98606859	1	loss	A	-1	germline	1	0.0145529655867995	0.0373735393152523
13	108732572	108745000	2	neutral	AA	100	somatic	0	0.487184887230194	0.905654235404946
13	109214157	109220371	1	loss	A	-1	somatic	0	0.0147720134469709	0.0379298487545469
13	113523566	113535994	2	neutral	AA	53.5453	somatic	0	0.372499731949066	0.578599790367349
13	114154287	114157394	1	loss	A	-1	somatic	0	0.0832980943472274	0.270095079784746
14	0	18682391	3	gain	AAB	-1	somatic	0	NA	NA
14	18694819	19726343	3	gain	AAB	-1	somatic	0	NA	NA
14	19726343	19956261	3	gain	AAB	0.663024	somatic	0	6.58096220760836e-24	0
14	24243921	24250135	2	neutral	AA	54.5686	somatic	0	0.629968208286371	0.954206731080233
14	24461411	24579477	2	neutral	AA	100	somatic	0	0.0778665035774563	0.0957539243173278
14	25648285	25654499	2	neutral	AA	100	somatic	0	0.17110915113507	0.380589734299082
14	27540448	27555983	2	neutral	AA	54.5678	somatic	0	0.492991374769274	0.864125733125566
14	27860469	27910181	2	neutral	AA	69.6704	somatic	0	0.375219394875497	0.301139126776974
14	33335003	33341217	2	neutral	AA	100	somatic	0	0.432650920379025	0.555675631691281
14	34347885	34350992	3	gain	-	-1	somatic	0	0.0832790145838865	0.270061945286038
14	37299535	37302642	1	loss	A	-1	germline	1	0.0832874092435597	0.270076524099901
14	49597041	49606362	2	neutral	AA	100	germline	1	0.046805664541819	0.0931073479387764
14	52986778	52992992	2	neutral	AA	100	somatic	0	0.404695871933456	0.454541112909645
14	53480791	53505647	2	neutral	AA	54.5705	somatic	0	0.891234076975137	0.695755620383164
14	56858100	56994808	2	neutral	AA	20.3975	somatic	0	0.383512578108431	0.591299092713219
14	68170687	68192436	2	neutral	AA	100	somatic	0	0.237784562719062	0.253984831729847
14	68326037	68338465	2	neutral	AA	53.032	somatic	0	0.591222123920503	0.538179595360023
14	73856497	73887567	2	neutral	AA	32.7544	somatic	0	0.0527326799226835	0.123847963286572
14	79638624	79647945	1	loss	A	-1	germline	1	0.002718552706291	0.00499765494732829
14	79840579	80337699	2	neutral	AA	22.4731	somatic	0	0.0649577968458154	0.174024090024818
14	82031014	82037228	1	loss	A	-1	germline	1	0.0143185237428079	0.0366687754056431
14	87850425	87856639	2	neutral	AA	100	somatic	0	0.692517425501249	0.96521407818512
14	88521537	88819809	2	neutral	AA	36.3791	somatic	0	0.240933168070578	0.112747347695116
14	99927334	99930441	6	gain	AAAABB	6.10259	germline	1	0.0832668053933506	0.270040740764073
14	104889213	104929604	2	neutral	AA	36.714	somatic	0	0.317921746462135	0.576567940073852
14	105349049	105358370	2	neutral	AA	19.7029	somatic	0	0.844283363037207	0.858645426668451
15	0	17079179	6	gain	-	-1	germline	1	NA	NA
15	17079179	17082286	14	gain	-	-1	germline	1	0.08326527934649	0.270038090284284
15	17082286	20341529	6	gain	-	-1	germline	1	0.702160812455731	0.794047208018982
15	20341529	20344636	13	gain	-	-1	germline	1	0.08326527934649	0.270038090284284
15	20344636	20397455	6	gain	-	-1	germline	1	9.63591002884018e-07	2.25123819364015e-07
15	20646015	20667764	5	gain	-	-1	germline	1	2.20961826252893e-05	1.22917090359387e-05
15	20667764	20670871	4	gain	-	-1	germline	1	0.0832721467357839	0.270050017592885
15	22224371	22233692	3	gain	AAB	10.6313	germline	1	0.00270246202723038	0.004961148778173
15	22243013	22270976	3	gain	AAB	1.96824	germline	1	0.000532766751176041	0.000671709273394772
15	23495134	23513776	2	neutral	AA	18.3803	somatic	0	0.0219292172266723	0.151415230263123
15	24983387	24995815	2	neutral	AA	38.1609	somatic	0	0.374956261782072	0.588414183118829
15	26247936	26260364	2	neutral	AA	100	somatic	0	0.943145587963275	0.692323223251816
15	34015436	34018543	2	neutral	AA	100	somatic	0	0.268384970468985	0.512781311102659
15	34437988	34518770	1	loss	A	-1	germline	1	2.18086073914343e-17	0
15	38228528	38231635	2	neutral	AA	100	somatic	0	0.103240781129827	0.303167228822739
15	41633800	41664870	2	neutral	AA	100	somatic	0	0.014343241584278	0.158066187734309
15	43600531	43603638	2	neutral	AA	100	somatic	0	0.954800217505567	0.952509481612412
15	44234359	44243680	2	neutral	AA	54.5873	somatic	0	0.230805318934337	0.459824740346897
15	49351588	49416835	2	neutral	AA	100	somatic	0	0.0234101581282811	0.0707513656901125
15	51588628	51632126	2	neutral	AA	20.467	somatic	0	0.0820355612540286	0.0749538021061262
15	59231848	59234955	2	neutral	AA	36.3787	somatic	0	0.737799316707738	0.868768281497657
15	59396519	59399626	2	neutral	AA	100	somatic	0	0.518738558992825	0.733971052894637
15	61509279	61546563	2	neutral	AA	100	somatic	0	0.0546396808895041	0.177531278863995
15	63134240	63146668	2	neutral	AA	100	somatic	0	0.530637308826484	0.493523125441953
15	63236771	63252306	2	neutral	AA	100	somatic	0	0.899917883843978	0.896081763894079
15	66514656	66517763	2	neutral	AA	100	somatic	0	0.14695234879344	0.367457651589187
15	68823157	68835585	2	neutral	AA	100	somatic	0	0.0681664012621343	0.172700583711125
15	72302997	72334067	2	neutral	AA	54.5704	germline	1	0.526138530005007	0.377880576572148
15	72719335	72722442	2	neutral	AA	100	somatic	0	0.305129130059154	0.550613815090757
15	73306558	73318986	2	neutral	AA	100	somatic	0	0.0128734843880302	0.0120996229514323
15	74661210	74664317	2	neutral	AA	100	somatic	0	0.525166531554285	0.738645728175373
15	75826335	75829442	2	neutral	AA	54.5678	somatic	0	0.890447946424907	0.932773456323621
15	76509875	76512982	2	neutral	AA	100	somatic	0	0.283034612074401	0.528136574163958
15	76590657	76603085	1	loss	A	-1	germline	1	0.000536428083549763	0.000681144310826443
15	77038065	77041172	1	loss	A	-1	germline	1	0.0832660423670883	0.270039415521802
15	77230699	77538292	2	neutral	AA	21.008	somatic	0	0.257513095741132	0.595978570438699
15	79135290	79138397	2	neutral	AA	100	somatic	0	0.240195273534862	0.482113437401848
15	79390064	79408706	2	neutral	AA	100	somatic	0	0.100085450856524	0.39754513499836
15	79818830	79943110	2	neutral	AA	100	germline	1	0.797911487523813	0.822466707348391
15	87281844	87325342	1	loss	A	-1	germline	1	9.25129981837777e-11	1.41597844560692e-12
15	89459851	89568596	2	neutral	AA	100	somatic	0	0.787719585341628	0.864872721441183
15	90127856	90134070	2	neutral	AA	36.3987	somatic	0	0.945841985983398	0.981924078053796
15	90603227	90634297	2	neutral	AA	54.7039	somatic	0	0.514966202725992	0.641146120753765
15	90929462	90935676	2	neutral	AA	54.5678	somatic	0	0.0815787098330614	0.17970802616795
15	92237509	92240616	2	neutral	AA	100	somatic	0	0.106693407674199	0.308614650925924
15	93458560	93461667	2	neutral	AA	100	somatic	0	0.635018583965791	0.811848181999338
15	98734246	98737353	2	neutral	AA	100	somatic	0	0.153981282553129	0.37702956894313
15	98855419	98883382	2	neutral	AA	54.6384	somatic	0	0.0882547281719402	0.154681834259083
15	99874515	99880729	1	loss	A	-1	somatic	0	0.0148710653551703	0.0383150352769749
15	101182562	101204311	2	neutral	AA	29.5806	somatic	0	0.365970514602424	0.182247942223262
16	1025310	1028417	4	gain	AAAA	9.78919	germline	1	0.0832698575550415	0.270046041780624
16	4082598	4091919	1	loss	A	-1	somatic	0	0.00274729541691374	0.00510351354156113
16	19934512	19953154	1	loss	A	-1	germline	1	2.21715251584334e-05	1.23480381132302e-05
16	21559473	21581222	4	gain	AABB	5.00499	germline	1	4.59562824719547e-06	1.66389300149117e-06
16	22615853	22699742	4	gain	AABB	1.95501	germline	1	1.03361272616384e-18	0
16	23035298	23038405	1	loss	A	-1	somatic	0	0.0832668053933506	0.270040740764071
16	25328264	25331371	0	loss	-	-1	germline	1	0.08326527934649	0.270038090284281
16	34062041	34065148	28	gain	AAAAAAAAAAAAAAAAAABBBBBBBBBB	76.3612	germline	1	0.08326527934649	0.270038090284284
16	34083790	34086897	15	gain	AAAAAAAAAABBBBB	100	germline	1	0.08326527934649	0.270038090284284
16	34086897	34096218	2	neutral	AA	41.2049	germline	1	0.00379350356176485	0.0073047407186676
16	34096218	34099325	11	gain	AAAAAAABBBB	37.3952	germline	1	0.08326527934649	0.270038090284284
16	34099325	34161465	2	neutral	AA	4.65401	somatic	0	0.119524978564726	0.0496248785515064
16	34161465	34214284	3	gain	AAB	0.492324	somatic	0	5.05977259116846e-06	2.19998302586344e-06
16	34618194	34624408	4	gain	-	-1	somatic	0	0.0143094300937818	0.0366372165948532
16	34624408	34959964	2	neutral	AA	1.16326	somatic	0	1.4281189041466e-19	0
16	35081137	35084244	2	neutral	AA	100	somatic	0	0.17668467773594	0.406672714255844
16	35233380	35522331	3	gain	AAB	5.45909	germline	1	4.97321179702313e-58	0
16	35985274	36087805	2	neutral	AA	5.63685	germline	1	0.000280444066106061	0.000157036361173146
16	36121982	36128196	4	gain	-	-1	germline	1	0.0143085270294019	0.0366364913844661
16	52377806	52380913	0	loss	-	-1	somatic	0	0.08326527934649	0.270038090284281
16	54363179	54388035	2	neutral	AA	54.7104	somatic	0	0.698251778288394	0.654003361286923
16	77656358	77668786	2	neutral	AA	54.5678	somatic	0	0.481179885150976	0.411819129975679
16	78336791	78352326	1	loss	A	-1	germline	1	0.000107896674033555	9.13394761236086e-05
16	83562765	83568979	2	neutral	AA	54.5678	somatic	0	0.215292303304822	0.445667043783858
16	89674234	89683555	1	loss	A	-1	germline	1	0.00270263765022369	0.00496136973590122
17	2314715	2317822	2	neutral	AA	100	germline	1	0.180184125186183	0.411110689993921
17	8500752	8780382	2	neutral	AA	100	somatic	0	2.73627682905581e-05	0.000880825409916075
17	11719604	11732032	2	neutral	AA	36.3786	somatic	0	0.446936677648277	0.608794761894602
17	21289164	21304699	4	gain	AABB	0.205227	germline	1	0.000107571243996512	9.0863913651984e-05
17	21854638	21857745	5	gain	-	-1	germline	1	0.0832668053933506	0.270040740764073
17	21857745	21922992	3	gain	-	-1	germline	1	3.28563874004907e-15	1.11022302462516e-16
17	21966490	21982025	13	gain	-	-1	germline	1	0.00269987279908326	0.00495761468106792
17	21982025	21985132	6	gain	AAAABB	-1	germline	1	NA	NA
17	21985132	22159124	6	gain	AAAABB	0.311919	germline	1	1.97406993878358e-09	7.5543016286872e-11
17	26782340	26791661	4	gain	-	-1	germline	1	0.00270070637075585	0.00495864522093037
17	26791661	26804089	3	gain	-	-1	germline	1	0.000539303187945375	0.000687041333310878
17	26807196	26822731	4	gain	-	-1	germline	1	0.000532334048198406	0.000671549742630728
17	26822731	26825838	5	gain	-	-1	germline	1	0.0832675684252771	0.27004206601109
17	26825838	26841373	3	gain	-	-1	germline	1	0.000110808443020526	9.83742259861309e-05
17	26841373	26847587	1	loss	A	-1	somatic	0	0.0153682280379305	0.0395248644875036
17	26847587	26878657	3	gain	-	-1	germline	1	5.70350472210862e-08	1.13930322953593e-08
17	26937690	26940797	29	gain	AAAAAAAAAAAAAAAAAAAABBBBBBBBB	10.9218	germline	1	0.08326527934649	0.270038090284284
17	28798783	28839174	2	neutral	AA	15.5948	somatic	0	0.0637171571300676	0.21403758093885
17	39288015	39343941	2	neutral	AA	36.7511	somatic	0	0.00168075522908305	0.0172459886714019
17	42951168	42957382	2	neutral	AA	100	somatic	0	0.77913979374741	0.93637944220869
17	48826505	48829612	1	loss	A	-1	somatic	0	0.0832797777064425	0.270063270609013
17	53117272	53210482	2	neutral	AA	100	somatic	0	0.088615438340095	0.324797506821765
17	53775956	53782170	1	loss	A	-1	germline	1	0.0143087678416541	0.0366361287839819
17	57609994	57613101	1	loss	A	-1	germline	1	0.0832668053933506	0.270040740764071
17	61726769	61745411	2	neutral	AA	54.6805	somatic	0	0.238751168472316	0.128748315423157
17	76292385	76512982	2	neutral	AA	15.6546	somatic	0	0.211074368689082	0.395983583775074
17	80741609	80744716	5	gain	AAABB	4.65014	germline	1	0.0832675684252771	0.27004206601109
17	80887638	80928029	2	neutral	AA	51.4151	somatic	0	0.504419422688183	0.877133705547303
17	80928029	80931136	3	gain	AAB	20.0514	germline	1	0.0832820671080983	0.270067246606432
17	82584060	82587167	3	gain	AAB	81.9134	germline	1	0.0832797777064425	0.270063270609015
17	83109143	83124678	2	neutral	AA	21.7766	somatic	0	0.724084465920277	0.977023569372437
18	5306756	5309863	1	loss	A	-1	somatic	0	0.0832919884377418	0.27008447642232
18	12083123	12092444	2	neutral	AA	1.25584	germline	1	0.488978443005061	0.649259236498591
18	12664132	12692095	2	neutral	AA	100	somatic	0	0.000971558671294837	0.00407543896647045
18	21143135	21149349	2	neutral	AA	100	somatic	0	0.807945850590086	0.709966991649244
18	22270976	22286511	2	neutral	AA	36.3862	germline	1	0.994538218318002	0.855299221928072
18	27947465	28077959	2	neutral	AA	34.2938	somatic	0	0.673471856226824	0.485548250058847
18	29594175	29597282	6	gain	AAABBB	10.7032	somatic	0	0.0832660423670883	0.270039415521805
18	31952388	31977244	2	neutral	AA	54.5786	somatic	0	0.987500974954261	0.459531152237723
18	35211631	35252022	2	neutral	AA	54.568	somatic	0	0.768876589809786	0.841918600934916
18	40679951	40686165	1	loss	A	-1	germline	1	0.0143144279588662	0.0366451947381101
18	41282709	41288923	1	loss	A	-1	germline	1	0.0143461369915651	0.0367519577190012
18	42391908	42416764	2	neutral	AA	100	somatic	0	0.453803032927525	0.538652926923463
18	44395923	44402137	1	loss	A	-1	germline	1	0.0144170119667878	0.036921373105981
18	50168729	50171836	1	loss	A	-1	somatic	0	0.0833202313086293	0.270133519520681
18	57662813	57669027	2	neutral	AA	100	somatic	0	0.570973259485039	0.950746587052663
18	61179937	61186151	2	neutral	AA	100	somatic	0	0.0604478081990686	0.131348318676278
18	63075207	63106277	2	neutral	AA	80.8492	somatic	0	0.605380442294228	0.375847672754666
18	64544818	64547925	1	loss	A	-1	somatic	0	0.0833477183038871	0.27018124336847
18	64613172	64616279	2	neutral	AA	100	somatic	0	0.786773083747218	0.891955657253752
18	68366428	68375749	2	neutral	AA	100	germline	1	0.464844570306282	0.787225754270348
18	69540874	69550195	1	loss	A	-1	germline	1	0.00270206691362259	0.00496078053533744
18	74614605	74617712	3	gain	-	-1	germline	1	0.083278251466995	0.270060619967809
18	76696295	76758435	3	gain	AAB	1.60468	germline	1	9.59927275775946e-15	0
18	78402038	78408252	2	neutral	AA	67.4892	somatic	0	0.445311748436627	0.789258691815389
18	79880970	79896505	2	neutral	AA	22.1119	germline	1	0.152787082799454	0.180252267609931
19	1671566	1677780	2	neutral	AA	54.5678	somatic	0	0.310457002069519	0.356676943371971
19	2752802	2818049	2	neutral	AA	22.4759	somatic	0	0.601731836159332	0.870651028176506
19	4216199	4219306	3	gain	-	-1	germline	1	0.0838468106780623	0.271046640339144
19	4219306	4222413	4	gain	-	-1	germline	1	0.0832706206096247	0.27004736704663
19	4222413	4225520	3	gain	AAA	72.2132	germline	1	0.083278251466995	0.270060619967809
19	4225520	4228627	2	neutral	AA	54.5678	somatic	0	0.435242965103568	0.668939557682593
19	5291221	5353361	2	neutral	AA	100	somatic	0	0.0946813958528174	0.137826673877759
19	7447479	7450586	3	gain	AAB	4.7787	germline	1	0.0832874092435597	0.270076524099904
19	7450586	7453693	7	gain	AAAAAAB	100	germline	1	0.0832660423670883	0.270039415521805
19	8870485	8920197	2	neutral	AA	0.545183	germline	1	0.00579816728180713	0.0143920219161092
19	8920197	8923304	1	loss	A	-1	somatic	0	0.0836605171467267	0.270723871417011
19	18666856	18688605	2	neutral	AA	100	somatic	0	0.215273310647972	0.490443619496392
19	18788029	18812885	2	neutral	AA	54.587	somatic	0	0.0881962272674078	0.133491512513765
19	22957623	22960730	0	loss	-	-1	germline	1	0.08326527934649	0.270038090284281
19	23088117	23470278	2	neutral	AA	94.3964	somatic	0	0.000338717413173247	0.00164324671611427
19	23961184	23970505	2	neutral	AA	7.50696	somatic	0	0.567546757309244	0.840007401170615
19	24330917	24405485	4	gain	AABB	0.199342	germline	1	4.51874968118629e-16	0
19	27332279	27338493	2	neutral	AA	11.2974	somatic	0	0.110472543609269	0.363531934895039
19	27338493	27341600	5	gain	AAABB	1.82753	germline	1	0.0832675684252771	0.27004206601109
19	27341600	27344707	2	neutral	AA	27.2839	somatic	0	0.109609845766227	0.313161319015674
19	27344707	27347814	5	gain	AAABB	2.30496	germline	1	0.0832675684252771	0.27004206601109
19	27347814	27378884	6	gain	AAAABB	0.162056	germline	1	9.63576142815727e-07	2.25123819364015e-07
19	27378884	27381991	4	gain	AAAB	6.11751	germline	1	0.0832729098073599	0.270051342873134
19	27381991	27385098	5	gain	AAABB	2.92127	germline	1	0.0832668053933506	0.270040740764073
19	27385098	27388205	7	gain	AAAAABB	2.01629	germline	1	0.0832660423670883	0.270039415521805
19	27388205	27397526	6	gain	AAAABB	1.54619	germline	1	0.00270000440003155	0.0049577618890273
19	27397526	27400633	4	gain	AABB	2.4028	germline	1	0.0832706206096247	0.27004736704663
19	27422382	27456559	2	neutral	AA	12.1262	somatic	0	0.294908452025803	0.499577906382027
19	27468987	27472094	1	loss	A	-1	germline	1	0.0832706206096247	0.270047367046628
19	34329243	34350992	2	neutral	AA	100	germline	1	0.445138347693807	0.443893988430388
19	34391383	34394490	5	gain	AAABB	2.12622	germline	1	0.0832675684252771	0.27004206601109
19	34394490	34403811	2	neutral	AA	100	germline	1	0.507313913093905	0.667353719492812
19	35360767	35370088	1	loss	A	-1	germline	1	0.00270338416429732	0.00496240099124601
19	39691925	39732316	2	neutral	AA	100	somatic	0	0.497992410270967	0.279606476342976
19	46431008	46449650	2	neutral	AA	36.3867	somatic	0	0.599816172862832	0.585680742842779
19	48111895	48127430	2	neutral	AA	38.7622	somatic	0	0.514408692734647	0.535829094102778
19	48522019	48540661	2	neutral	AA	54.5679	germline	1	0.0135755990135885	0.0534637617224477
19	50597495	50637886	2	neutral	AA	37.4991	somatic	0	0.2887854081453	0.563774304752364
19	51632126	51644554	1	loss	A	-1	germline	1	0.000533199781870809	0.000672866934400274
20	65247	68354	4	gain	-	-1	germline	1	0.0832698575550415	0.270046041780624
20	1407471	1410578	1	loss	A	-1	somatic	0	0.0832751990560741	0.270055318742364
20	1581463	1612533	1	loss	A	-1	germline	1	9.68066461709661e-07	2.26159995175834e-07
20	22081449	22084556	1	loss	A	-1	somatic	0	0.0832790145838865	0.270061945286036
20	25719746	25725960	3	gain	-	-1	germline	1	0.0143129826348304	0.0366470081644622
20	26316290	26322504	0	loss	-	-1	germline	1	0.0143062394913081	0.0366317778230874
20	28780141	28786355	9	gain	-	-1	germline	1	0.0143062394913081	0.036631777823088
20	28795676	28801890	3	gain	-	-1	germline	1	0.0146704044416963	0.0377109992833119
20	28801890	28804997	5	gain	-	-1	germline	1	0.0832675684252771	0.27004206601109
20	28804997	28832960	11	gain	-	-1	germline	1	4.5934208764926e-06	1.66331670736763e-06
20	28870244	28873351	8	gain	-	-1	germline	1	0.08326527934649	0.270038090284284
20	29264833	29280368	4	gain	-	-1	germline	1	0.000532334048198406	0.00067158962199132
20	29283475	29308331	3	gain	-	-1	germline	1	4.59776537987317e-06	1.66539226753581e-06
20	29407755	29410862	6	gain	-	-1	germline	1	0.0832668053933506	0.270040740764073
20	29693599	29858270	3	gain	-	-1	somatic	0	2.20076063411915e-08	4.34231428592113e-09
20	29876912	29880019	9	gain	-	-1	germline	1	0.08326527934649	0.270038090284284
20	29886233	29889340	4	gain	-	-1	germline	1	0.0832721467357839	0.270050017592885
20	29889340	29895554	5	gain	-	-1	germline	1	0.014306721051464	0.0366325029518393
20	30976790	30979897	3	gain	-	-1	somatic	0	0.0832767252502056	0.270057969345592
20	30995432	31001646	3	gain	-	-1	somatic	0	0.0143125008887596	0.0366419307685275
20	31066893	31070000	53	gain	-	-1	germline	1	0.08326527934649	0.270038090284284
20	31166317	31169424	5	gain	-	-1	germline	1	0.0832683314628677	0.270043391262854
20	31181852	31184959	4	gain	-	-1	germline	1	0.0832706206096247	0.27004736704663
20	31184959	31188066	26	gain	-	-1	germline	1	0.08326527934649	0.270038090284284
20	31188066	31191173	5	gain	-	-1	germline	1	0.0832675684252771	0.27004206601109
20	31191173	31240885	3	gain	-	-1	germline	1	2.46494017924091e-05	1.83506994427818e-05
20	31240885	31243992	50	gain	-	-1	germline	1	0.08326527934649	0.270038090284284
20	42749213	42786497	2	neutral	AA	100	germline	1	0.996544520690816	0.913620179929641
20	43640922	43650243	1	loss	A	-1	germline	1	0.00312384183943934	0.00640390628794796
20	49078172	49112349	2	neutral	AA	36.3786	somatic	0	0.00353219659584162	0.0336651425443525
20	52206921	52219349	2	neutral	AA	54.5678	somatic	0	0.831483955058341	0.832146158657597
20	60993517	61015266	3	gain	AAB	3.48986	germline	1	4.60197118513318e-06	1.66787468214302e-06
20	62978890	63050351	2	neutral	AA	20.1106	germline	1	0.464299237856921	0.419649730663023
21	0	8988551	7	gain	AAAAABB	-1	germline	1	0.000532033046319881	0.000670965100339926
21	8988551	8994765	10	gain	AAAAAAABBB	1.52826	germline	1	0.0143061191035034	0.0366314152634218
21	8994765	10681866	7	gain	AAAAABB	-1	germline	1	1.97406993878358e-09	7.55385753947735e-11
21	10681866	10691187	5	gain	AAABB	1.76458	germline	1	0.00270000440003155	0.0049577618890273
21	10691187	10694294	48	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBBBBB	100	germline	1	0.08326527934649	0.270038090284284
21	10694294	10756434	7	gain	AAAAABB	0.624442	germline	1	1.97148746517066e-11	1.87294624254264e-13
21	14758250	14761357	2	neutral	AA	100	somatic	0	0.273625911751718	0.518326938165594
21	18741424	18747638	2	neutral	AA	100	somatic	0	0.0386608566569904	0.0728134310549116
21	18909202	18912309	2	neutral	AA	100	somatic	0	0.81172842454086	0.902786790434643
21	20111611	20127146	2	neutral	AA	27.284	somatic	0	0.0348333511938812	0.0289838631557898
21	20586982	20590089	1	loss	A	-1	germline	1	0.0832851197229448	0.270072548002785
21	21354411	21357518	2	neutral	AA	100	somatic	0	0.0960300979197535	0.291546229639102
21	23128508	23212397	2	neutral	AA	55.3983	germline	1	0.503317132856117	0.388572084933309
21	23970505	24017110	2	neutral	AA	36.3791	somatic	0	0.280203566418576	0.0516434931690173
21	29939052	29982550	2	neutral	AA	31.7389	somatic	0	0.295343431035907	0.68289950088153
21	30085081	30088188	2	neutral	AA	100	somatic	0	0.269134465651134	0.513603789355211
21	30420637	30429958	2	neutral	AA	54.5679	somatic	0	0.755744098134126	0.868207157851623
21	30526275	30548024	2	neutral	AA	100	somatic	0	0.850979614311209	0.495925661006169
21	31256420	31262634	2	neutral	AA	54.5678	somatic	0	0.0484216810562483	0.0832143019574758
21	31784610	31787717	3	gain	AAB	15.0868	somatic	0	0.083283593404192	0.270069897295115
21	34779758	34782865	2	neutral	AA	100	somatic	0	0.754641052041274	0.877000737878696
21	35239594	35311055	2	neutral	AA	46.8744	somatic	0	0.00109013238335848	0.00262040641763461
21	35758463	35786426	2	neutral	AA	95.3927	somatic	0	0.966205989664305	0.957061075969262
21	36044307	36050521	2	neutral	AA	100	somatic	0	0.54169575566516	0.770623791469577
21	39971555	39977769	3	gain	AAB	12.6778	germline	1	0.0143294910746027	0.0366912801043771
21	40505959	40533922	2	neutral	AA	41.2375	somatic	0	0.158738013814812	0.439110568433458
21	40847729	40853943	2	neutral	AA	54.5678	somatic	0	0.938493701391124	0.993345426237625
21	41804685	41807792	3	gain	AAB	100	germline	1	0.0832790145838865	0.270061945286038
21	42130920	42186846	2	neutral	AA	40.3417	somatic	0	0.356085762263694	0.623822032890111
21	43333329	43336436	2	neutral	AA	47.9083	somatic	0	0.0994372086707582	0.297081630997504
21	43336436	43339543	3	gain	AAA	77.0432	somatic	0	0.0832858828908183	0.270073873363745
21	46039526	46061275	2	neutral	AA	15.2228	somatic	0	0.879188461910786	0.99649129102304
22	10728471	10731578	10	gain	-	-1	germline	1	0.08326527934649	0.270038090284284
22	11626394	11629501	4	gain	AABB	21.9059	germline	1	0.0832713836698722	0.270048692317384
22	16262038	16268252	3	gain	-	-1	somatic	0	0.014342516863759	0.0367286936554442
22	17290455	17293562	1	loss	A	-1	germline	1	0.0833377915973284	0.270164009046966
22	17874571	17877678	4	gain	AAAA	2.29728	germline	1	0.0832729098073599	0.270051342873134
22	22333116	22339330	2	neutral	AA	100	somatic	0	0.440718414800426	0.405424901288953
22	25051741	25057955	1	loss	A	-1	germline	1	0.0144099832941159	0.0369334220511558
22	25064169	25191556	2	neutral	AA	56.0327	somatic	0	0.272028713332909	0.318901815451916
22	29118804	29121911	4	gain	AABB	17.8644	germline	1	0.0832721467357839	0.270050017592885
22	31458375	31489445	2	neutral	AA	100	somatic	0	0.218678634966816	0.540815386272614
22	32145022	32148129	1	loss	A	-1	germline	1	0.083348481936368	0.270182569118744
22	36746489	36752703	1	loss	A	-1	germline	1	0.0143443268269278	0.0367246964422401
22	37718980	37740729	2	neutral	AA	100	somatic	0	0.229048955126206	0.649491842242045
22	39051883	39117130	2	neutral	AA	18.1897	germline	1	0.0283378034273734	0.10819002200582
22	41612051	41627586	2	neutral	AA	100	germline	1	0.0253067409902961	0.0452535137391402
22	43507321	43510428	1	loss	A	-1	somatic	0	0.0834585041921866	0.270373526728112
22	44333783	44343104	2	neutral	AA	54.5678	somatic	0	0.503238730708289	0.820871673332558
22	45328023	45331130	3	gain	AAB	9.95942	germline	1	0.083283593404192	0.270069897295115
22	50137659	50221548	2	neutral	AA	77.2186	somatic	0	0.334978802057842	0.150054350352898
22	50640993	50644100	4	gain	AABB	26.3741	germline	1	0.0832706206096247	0.27004736704663
X	26080158	26089479	1	loss	A	-1	germline	1	0.00319955873300302	0.00653336715041419
X	48080825	48127430	2	neutral	AA	54.5707	somatic	0	0.956989798105963	0.791051112152508
X	48503377	49190024	2	neutral	AA	13.2809	somatic	0	1.85688213713029e-14	5.226152843818e-12
X	53079988	53173198	2	neutral	AA	54.5678	somatic	0	0.0316411923688365	0.0337405896301731
X	56882956	57004129	2	neutral	AA	54.5725	germline	1	0.917760068653617	0.658330427000005
X	57696990	57700097	3	gain	-	-1	somatic	0	0.0832774883557681	0.270059294654327
X	58442670	58476847	2	neutral	AA	88.64	somatic	0	0.439601730289836	0.190859203497535
X	58489275	58498596	1	loss	A	-1	germline	1	0.0143446888437372	0.0366894647614664
X	58507917	62693046	2	neutral	AA	1.09317	germline	1	8.45185000608496e-11	3.86957260012366e-07
X	69714866	69780113	2	neutral	AA	100	somatic	0	0.422994729330767	0.620587806744968
X	70917275	70920382	0	loss	-	-1	germline	1	0.08326527934649	0.270038090284281
X	82730089	82742517	1	loss	A	-1	somatic	0	0.0310973459510492	0.13912644806586
X	83913856	84535256	2	neutral	AA	44.5685	somatic	0	0.00163547692663092	0.000694259125139096
X	85517068	85697274	2	neutral	AA	100	somatic	0	0.0065379274156628	0.0401275098364559
X	100704084	100766224	2	neutral	AA	36.7126	somatic	0	0.620672505713006	0.609484630509506
X	101076924	101306842	2	neutral	AA	12.2097	germline	1	0.145657182063177	0.354914901237024
X	108772963	108776070	0	loss	-	-1	germline	1	0.08326527934649	0.270038090284281
X	109207943	109304260	2	neutral	AA	93.3011	somatic	0	0.0868634080566851	0.222357909209019
X	115400194	115406408	1	loss	A	-1	germline	1	0.0150036889693357	0.0387321751770812
X	117441493	117466349	2	neutral	AA	100	somatic	0	0.736312028700601	0.910653551314737
X	119507648	119538718	2	neutral	AA	100	somatic	0	0.00640799898388633	0.0206412610282317
X	125479302	125485516	2	neutral	AA	100	somatic	0	0.976675582725724	0.845709531395739
X	131134042	131140256	1	loss	A	-1	somatic	0	0.014366907952143	0.0367450498550448
X	138000512	138214895	2	neutral	AA	52.0128	somatic	0	0.57469966144996	0.941051193275074
X	140722244	140728458	3	gain	AAB	8.89084	germline	1	0.0215381771533349	0.0590811089827454
X	141380928	141387142	1	loss	A	-1	somatic	0	0.0148421900689882	0.0382362953830023
X	141787945	141794159	1	loss	A	-1	germline	1	0.0143583306802174	0.0367865140829369
X	155191543	155272325	2	neutral	AA	100	somatic	0	0.694708537197476	0.928667992946036
X	155638951	155663807	2	neutral	AA	55.0806	somatic	0	0.269089686383383	0.746896534590548
