chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	1381992	1384580	4	gain	-	-1	somatic	0	0.0832733954726762	0.270052298051706
1	5667720	5675484	3	gain	-	-1	germline	1	0.00270442083460754	0.00496696408201147
1	16612372	16635664	8	gain	-	-1	germline	1	0.00270015154010289	0.00495796310989316
1	16721068	16726244	5	gain	-	-1	germline	1	0.0143074794086914	0.0366337648837664
1	16899640	16943636	4	gain	-	-1	germline	1	9.22996495147675e-09	5.58967427899404e-10
1	31431260	31433848	5	gain	-	-1	germline	1	0.0832702243005181	0.270046790432254
1	53095408	53103172	3	gain	-	-1	somatic	0	0.00322704510686071	0.00682121923593748
1	55662704	55667880	0	loss	-	-1	germline	1	0.0143073793387631	0.0366340662475899
1	72288016	72347540	1	loss	A	-1	germline	1	1.05522411651454e-14	1.11022302462516e-16
1	115686188	115691364	1	loss	A	-1	germline	1	0.0147531934091982	0.0379691217262189
1	125067688	125072864	3	gain	-	-1	somatic	0	0.0143173893883282	0.0366557701440401
1	125080628	125083216	10	gain	-	-1	germline	1	0.0832676874332268	0.270042384395729
1	125083216	125085804	5	gain	-	-1	germline	1	0.0832695900778257	0.270045688918203
1	125085804	125163444	3	gain	-	-1	germline	1	0.000353406497715201	0.000968737815509657
1	125163444	125166032	6	gain	-	-1	germline	1	0.0832689558590464	0.270044587407432
1	152583304	152614360	1	loss	A	-1	germline	1	1.37730477959469e-08	1.09286679705889e-09
1	164048144	164063672	2	neutral	AA	21.8362	germline	1	0.417393691578463	0.195096525915948
1	174925508	174938448	2	neutral	AA	15.5169	somatic	0	0.94321270233919	0.999896007195329
1	179928112	180039396	2	neutral	AA	18.1902	germline	1	0.465140747239002	0.594115695510069
1	183704004	183776468	2	neutral	AA	100	somatic	0	0.343054292832065	0.561343022374038
1	185181752	185199868	2	neutral	AA	36.3786	somatic	0	0.151678858914241	0.233114435325322
1	186227304	186310120	2	neutral	AA	10.6047	somatic	0	0.901231995646807	0.563801718205549
1	186936416	186985588	2	neutral	AA	55.3504	somatic	0	0.861866773973782	0.892678549918949
1	187743872	187761988	1	loss	A	-1	germline	1	0.00159052482827556	0.010374627078155
1	190921936	191356720	2	neutral	AA	100	somatic	0	0.151685343756274	0.263033319320346
1	199772896	199796188	2	neutral	AA	36.3786	somatic	0	0.637215514045683	0.837831603038196
1	200639876	200665756	2	neutral	AA	100	somatic	0	0.0224922306527355	0.0342991654139042
1	211395604	211452540	2	neutral	AA	36.3786	somatic	0	0.824206904833527	0.974895526269119
1	223416864	223440156	2	neutral	AA	36.3788	germline	1	0.506279057386083	0.623730515412192
1	224012104	224014692	10	gain	AAAAAAAAAA	1.91696	germline	1	0.0832676874332268	0.270042384395729
1	234775596	234778184	4	gain	AAAB	12.9828	germline	1	0.0832714927576421	0.270048993470196
1	234778184	234783360	6	gain	AAAABB	5.28308	germline	1	0.0143072792694521	0.0366331621626269
1	235202616	235601168	2	neutral	AA	15.152	somatic	0	0.435401034240752	0.672961689077274
1	236532848	236778708	2	neutral	AA	47.5443	somatic	0	0.846257022310421	0.889120549854092
1	239079440	239097556	2	neutral	AA	100	somatic	0	0.315704336858357	0.622182383874296
1	244829976	244884324	2	neutral	AA	100	somatic	0	0.580214565135053	0.505632910340248
2	3178064	3180652	3	gain	-	-1	germline	1	0.0833197057279302	0.270132718633372
2	3180652	3183240	6	gain	-	-1	germline	1	0.0832689558590464	0.270044587407432
2	32914184	32916772	5	gain	-	-1	germline	1	0.0832714927576421	0.270048993470196
2	34472160	34505804	1	loss	A	-1	germline	1	1.25408554873036e-08	4.99242314155879e-10
2	35750632	35766160	1	loss	A	-1	germline	1	6.34351880697112e-05	4.42676513729978e-05
2	89772544	89824304	4	gain	-	-1	germline	1	2.91030903961403e-13	1.59872115546023e-14
2	89824304	89826892	11	gain	-	-1	germline	1	0.0832676874332268	0.270042384395729
2	89826892	89842420	35	gain	-	-1	germline	1	2.20920719088304e-05	1.2289334562543e-05
2	89842420	89850184	3	gain	-	-1	germline	1	0.00279021054607187	0.00512929160898978
2	90064988	90209916	1	loss	A	-1	germline	1	2.09148101295547e-09	1.18793086478775e-10
2	91410748	91415924	3	gain	-	-1	germline	1	0.0143137850590237	0.0366458211287182
2	109198072	109200660	19	gain	-	-1	germline	1	0.0832657848238449	0.270039079902773
2	117039712	117044888	1	loss	A	-1	germline	1	0.0206132178787391	0.0561521206821054
2	125686220	125693984	1	loss	A	-1	germline	1	0.00414283678964989	0.00689182382678666
2	135116892	135119480	4	gain	-	-1	somatic	0	0.0832714927576421	0.270048993470196
2	146105540	146118480	1	loss	A	-1	germline	1	0.000226359815570903	0.000214603857762952
2	159982396	160062624	1	loss	A	-1	germline	1	2.0420422112834e-19	0
2	179203472	179213824	1	loss	A	-1	germline	1	0.00129614327154772	0.00146972828918979
2	207485136	207495488	1	loss	A	-1	germline	1	0.00130220298890087	0.00163109622939772
2	228398764	228403940	0	loss	-	-1	germline	1	0.014309180691941	0.0366397925723754
2	239296832	239299420	2	neutral	AA	100	somatic	0	0.525910969458867	0.739188006674618
2	240761640	240813400	2	neutral	AA	32.3759	somatic	0	0.0275664367302433	0.0586444863502994
2	240826340	240865160	2	neutral	AA	100	somatic	0	0.30505043343173	0.492048103349526
2	241566508	241620856	2	neutral	AA	40.1932	somatic	0	0.0123801919094279	0.0775223970008113
3	186336	194100	1	loss	A	-1	somatic	0	0.00661595389060836	0.0113349956594587
3	6275900	6294016	4	gain	AAAB	3.87331	germline	1	4.59628110560727e-06	1.6645664567827e-06
3	35815332	35848976	2	neutral	AA	54.5678	somatic	0	0.333505347808733	0.502085792318077
3	43009972	43017736	3	gain	-	-1	somatic	0	0.00300125991079002	0.00594420256947126
3	47448392	47453568	1	loss	A	-1	germline	1	0.0201361760291288	0.0546359958820201
3	48002224	48017752	2	neutral	AA	54.5678	somatic	0	0.338119194509996	0.363177929687877
3	55623884	55714464	2	neutral	AA	25.4156	germline	1	0.955781222735412	0.588620952136191
3	56281236	56361464	2	neutral	AA	18.3082	somatic	0	0.041831267758274	0.0879070822725881
3	68690696	68698460	1	loss	A	-1	germline	1	0.00699710574025125	0.00896584216710239
3	75670532	75774052	3	gain	AAB	0.402578	somatic	0	0.000116856584445094	7.52860749455575e-05
3	77777164	77787516	3	gain	AAB	1.31637	germline	1	0.000590153219154722	0.000780038653914406
3	80010608	80018372	2	neutral	AA	100	somatic	0	0.00752098006007737	0.0145176796288152
3	80924172	81076864	2	neutral	AA	37.9417	somatic	0	0.60333275214006	0.288224256197638
3	85391060	85538576	2	neutral	AA	37.2619	germline	1	0.0317085385569965	0.0380647729229406
3	98688204	98698556	1	loss	A	-1	germline	1	0.0063392749299096	0.0122132858280047
3	99179924	99185100	1	loss	A	-1	germline	1	0.01964737062677	0.0531028011338444
3	115272108	115435152	2	neutral	AA	41.4992	somatic	0	0.0595515825844846	0.0719384052937433
3	125197088	125634460	2	neutral	AA	20.8587	somatic	0	0.0438922871349259	0.0406525134465167
3	128685712	128696064	3	gain	AAB	9.85681	germline	1	0.000533114432869692	0.0006722732630009
3	135272172	135305816	2	neutral	AA	100	somatic	0	0.303320103408349	0.44896757728335
3	148667660	148678012	2	neutral	AA	27.284	somatic	0	0.411414791385529	0.798257857442464
3	162412528	162425468	1	loss	A	-1	germline	1	0.000204640163274071	0.000168840774760315
3	173520224	173571984	3	gain	AAB	1.42772	germline	1	1.56093510166001e-14	4.44089209850063e-16
3	191346368	191354132	1	loss	A	-1	germline	1	0.00573489012914492	0.00858356638111502
4	126812	134576	0	loss	-	-1	germline	1	0.0143690390387288	0.0368201190653388
4	9860280	9875808	2	neutral	AA	56.3191	somatic	0	0.162525511219488	0.370368213166935
4	10209660	10232952	1	loss	A	-1	germline	1	7.48534422053018e-07	1.50631621065322e-07
4	10390820	10401172	1	loss	A	-1	germline	1	0.00133234259285642	0.00162226255071074
4	25626376	25662608	2	neutral	AA	36.3786	somatic	0	0.28618855538146	0.603861427180025
4	31814284	31819460	0	loss	-	-1	germline	1	0.0143236988910967	0.0366841227177881
4	32738200	32771844	2	neutral	AA	91.5806	somatic	0	0.259813791244266	0.213620737723315
4	40292572	40297748	5	gain	AAABB	7.37689	germline	1	0.0143078796945791	0.0366343676135821
4	44296208	44329852	2	neutral	AA	78.6313	somatic	0	0.189556704106095	0.493509173481316
4	47018784	49089184	2	neutral	AA	39.688	somatic	0	0.188879102232085	0.0195986587418857
4	49089184	51816936	2	neutral	AA	-1	somatic	0	0.00010752101813923	9.0813866276962e-05
4	51816936	52381120	2	neutral	AA	18.6408	somatic	0	0.180973517532836	0.242893419475247
4	55189100	55328852	2	neutral	AA	36.3618	somatic	0	0.696887612857124	0.792899340537389
4	63198960	63204136	1	loss	A	-1	germline	1	0.0207322751923276	0.0565277552024933
4	63268836	63289540	1	loss	A	-1	germline	1	3.79445859805671e-06	9.83793846276448e-07
4	63827844	63843372	1	loss	A	-1	germline	1	6.4919719484272e-05	4.45233870659534e-05
4	67826304	67834068	2	neutral	AA	25.375	somatic	0	0.48307994428223	0.713865409376541
4	68095456	68103220	2	neutral	AA	100	somatic	0	0.417136358798886	0.697017475295403
4	72055096	72127560	2	neutral	AA	100	somatic	0	0.540462875655856	0.776110698873864
4	72966072	73354272	2	neutral	AA	57.3011	somatic	0	0.546703678231065	0.781615658384011
4	79891560	79904500	2	neutral	AA	100	somatic	0	0.975743160751551	0.897244426694615
4	82865172	83048920	2	neutral	AA	8.89422	somatic	0	0.859409154202512	0.667274890319071
4	87073260	87616740	2	neutral	AA	77.6017	somatic	0	0.205580180371293	0.125126619195029
4	93944400	94425768	2	neutral	AA	47.7474	somatic	0	0.992532791272852	0.416657835144146
4	114599228	114689808	2	neutral	AA	100	somatic	0	0.768403871655946	0.702245786811158
4	117057828	117101824	2	neutral	AA	100	somatic	0	0.962421848493602	0.934290758206126
4	121664468	121698112	2	neutral	AA	100	somatic	0	0.617418965223842	0.794063417823368
4	123072340	123165508	2	neutral	AA	44.7706	somatic	0	0.701316442800263	0.773631889822301
4	124801124	124946052	2	neutral	AA	97.7716	somatic	0	0.4025844568475	0.497369008068657
4	129987476	130015944	2	neutral	AA	100	somatic	0	0.0428634445793317	0.154982251685417
4	137233876	137254580	2	neutral	AA	54.5678	somatic	0	0.979526813864304	0.828265551559727
4	141907804	142202836	2	neutral	AA	100	somatic	0	0.236334409705646	0.0482509100629239
4	145352432	145365372	1	loss	A	-1	germline	1	0.000289459989344175	0.000216331979671636
4	146284112	146289288	3	gain	AAB	7.19455	somatic	0	0.0148401419709334	0.0382395497532998
4	151869016	151874192	1	loss	A	-1	somatic	0	0.0215287677515037	0.0552129456805529
4	162922364	162963772	2	neutral	AA	36.4137	somatic	0	0.84223377986095	0.60822095188788
4	164576096	164609740	2	neutral	AA	54.5679	somatic	0	0.144490212634639	0.614629879686556
4	165080756	165085932	1	loss	A	-1	germline	1	0.0209877978694368	0.0573352667912624
4	166281588	166304880	2	neutral	AA	21.8271	somatic	0	0.970849490394346	0.999439604298396
4	167187388	167195152	0	loss	-	-1	germline	1	0.0143202934580287	0.0366720554484974
4	171995892	172008832	2	neutral	AA	100	somatic	0	0.407516946496085	0.410144318111923
4	172503140	172510904	1	loss	A	-1	germline	1	0.00510054374434209	0.00882526859820243
4	185518192	185523368	1	loss	A	-1	germline	1	0.0208076936505258	0.0567670369915149
4	185924508	185932272	2	neutral	AA	48.067	somatic	0	0.38486464160503	0.524538490196596
4	186170368	186178132	1	loss	A	-1	somatic	0	0.00633994721427393	0.00998517386583642
5	414080	416668	4	gain	-	-1	germline	1	0.0832714927576421	0.270048993470196
5	758284	763460	4	gain	-	-1	germline	1	0.0143086802959912	0.0366361758550882
5	3320404	3325580	3	gain	-	-1	somatic	0	0.0189822239328431	0.0510034474709096
5	5683248	5714304	3	gain	-	-1	germline	1	2.05388400999548e-09	8.56241744173758e-11
5	12810600	12820952	1	loss	A	-1	germline	1	0.00136392986882329	0.00149568403677802
5	26796152	26803916	1	loss	A	-1	germline	1	0.0207337299581561	0.0565321459305159
5	45370228	45377992	1	loss	A	-1	germline	1	0.00544664854620802	0.00947477075367986
5	46268264	46276028	1	loss	A	-1	germline	1	0.0222734911850924	0.0614362345072167
5	46405428	46410604	1	loss	A	-1	germline	1	0.0143150865300421	0.0366452182340332
5	86917980	86923156	1	loss	A	-1	germline	1	0.0146834257316874	0.0376444696016115
5	91203708	91206296	0	loss	-	-1	germline	1	0.0832664190230592	0.270040181397146
5	120044380	120049556	1	loss	A	-1	germline	1	0.01546918860249	0.0396538783650122
5	135776832	135784596	1	loss	A	-1	germline	1	0.00494422105802086	0.00952469189677196
5	139713180	139723532	2	neutral	AA	100	germline	1	0.334222770022975	0.724086512884635
5	140279952	140287716	2	neutral	AA	100	somatic	0	0.633157096009784	0.788959054519367
5	141175400	141177988	6	gain	AAAABB	33.1542	germline	1	0.0832689558590464	0.270044587407432
5	144534624	144651084	2	neutral	AA	50.0148	somatic	0	0.000287679628912018	0.000742551717400897
5	148652132	148716832	2	neutral	AA	11.9064	somatic	0	0.754300104362855	0.756897936426032
5	151405764	151465288	2	neutral	AA	54.5678	somatic	0	0.299108332316647	0.479049440835946
5	154638176	154666644	2	neutral	AA	36.3786	somatic	0	0.468237768942549	0.632080117804822
5	156051224	156061576	1	loss	A	-1	germline	1	0.00127275306746756	0.0013634299364097
5	166297116	166317820	2	neutral	AA	54.5679	somatic	0	0.373780611653041	0.685062595834078
5	169498472	169506236	2	neutral	AA	100	somatic	0	0.801117499643092	0.461372048361518
5	172070944	172099412	2	neutral	AA	36.3786	somatic	0	0.372422572661707	0.255556423109751
5	173157904	173220016	2	neutral	AA	54.5678	somatic	0	0.683281631304269	0.939872918706849
5	175158428	175163604	2	neutral	AA	100	germline	1	0.844857060275863	0.933151412572232
5	175414640	175458636	2	neutral	AA	54.571	somatic	0	0.69456339775817	0.264688637272411
5	175476752	175502632	2	neutral	AA	100	somatic	0	0.748042333224211	0.519784996030643
5	178584940	178587528	5	gain	AAAAA	4.62321	germline	1	0.0832702243005181	0.270046790432254
5	179382044	179389808	2	neutral	AA	54.5678	somatic	0	0.810912799901902	0.979966562088573
5	180657928	180660516	4	gain	AAAB	21.1047	somatic	0	0.0832740297188472	0.270053399585435
5	180950372	181002132	1	loss	A	-1	germline	1	5.56904522227822e-13	5.55111512312578e-16
5	181043540	181046128	5	gain	AAABB	12.207	germline	1	0.0832702243005181	0.270046790432254
5	181046128	181048716	3	gain	AAB	14.2163	germline	1	0.0834289027877437	0.270322271853199
6	256212	383024	4	gain	AABB	0.45305	germline	1	7.34559885801719e-32	0
6	18553372	18581840	2	neutral	AA	25.9955	somatic	0	0.270549323042877	0.475518766888569
6	20957624	20960212	6	gain	-	-1	germline	1	0.0832689558590464	0.270044587407432
6	27875348	27896052	2	neutral	AA	100	somatic	0	0.54003184172248	0.571514810776435
6	32489752	32668324	1	loss	A	-1	germline	1	1.26983865487958e-18	0
6	35657464	35662640	1	loss	A	-1	germline	1	0.0143345208879791	0.0367079657811871
6	41527048	41534812	2	neutral	AA	100	somatic	0	0.299610748052828	0.256382913434585
6	44285856	44298796	2	neutral	AA	54.5783	somatic	0	0.0421485574409549	0.0296991029879544
6	54063320	54071084	1	loss	A	-1	germline	1	0.0143148862969375	0.0366533580445544
6	60238288	60240876	4	gain	-	-1	germline	1	0.0832714927576421	0.270048993470196
6	66299384	66338204	1	loss	A	-1	germline	1	1.2641852281957e-10	2.35123032155116e-12
6	72272488	72451060	2	neutral	AA	100	somatic	0	0.266069486917427	0.315361259923099
6	73033360	73116176	2	neutral	AA	100	somatic	0	0.265815114336882	0.345792686591247
6	73902928	73910692	1	loss	A	-1	germline	1	0.0264652631241903	0.0552895778005743
6	88028232	88108460	2	neutral	AA	22.3435	somatic	0	0.230457453615282	0.501822963187551
6	102735836	102779832	2	neutral	AA	100	somatic	0	0.470182707743897	0.469525321090737
6	103289668	103315548	1	loss	A	-1	germline	1	1.23086613072632e-06	2.1042026820961e-07
6	104394744	104412860	2	neutral	AA	100	germline	1	0.01015442813188	0.0246809454483014
6	105730152	105831084	2	neutral	AA	100	somatic	0	0.922533894023851	0.754524790752498
6	107704796	107715148	2	neutral	AA	100	somatic	0	0.938398737023081	0.816782911161911
6	116778324	116954308	2	neutral	AA	47.9877	somatic	0	0.0816715883221858	0.0757031976258307
6	117756588	117764352	1	loss	A	-1	germline	1	0.00504144081695764	0.0102356778037185
6	118212076	118237956	2	neutral	AA	55.0709	somatic	0	0.756425686165452	0.334500445083787
6	118644272	118646860	7	gain	AAAAAAA	10.9722	germline	1	0.0832689558590464	0.270044587407432
6	121118400	121214156	2	neutral	AA	100	somatic	0	0.210156168538637	0.504799395613256
6	121511776	121524716	2	neutral	AA	100	somatic	0	0.63740426243144	0.52713662074265
6	146170240	146178004	1	loss	A	-1	germline	1	0.00655241177110661	0.00944499811243482
6	160839024	160857140	3	gain	AAB	6.88114	somatic	0	5.14832292774642e-06	2.42311130138617e-06
6	165311088	165318852	1	loss	A	-1	germline	1	0.00461915756254421	0.00798835235837447
6	168657372	168659960	4	gain	AAAA	9.57179	somatic	0	0.0832714927576421	0.270048993470196
7	903212	905800	7	gain	-	-1	germline	1	0.0832689558590464	0.270044587407432
7	905800	908388	4	gain	-	-1	germline	1	0.0832803723957831	0.27006441510312
7	26097392	26107744	1	loss	A	-1	germline	1	0.00144420079022522	0.0017083781283681
7	52660624	52676152	4	gain	-	-1	germline	1	2.2181461314845e-05	1.244218977281e-05
7	57487244	57497596	4	gain	-	-1	germline	1	0.000532271518241987	0.000671333809669994
7	58030724	61045744	3	gain	-	-1	somatic	0	8.90104236007256e-23	0
7	61045744	61053508	4	gain	-	-1	germline	1	0.00270069854117627	0.00495875851114114
7	61053508	61097504	3	gain	-	-1	germline	1	5.26805605854872e-05	0.000154952803204433
7	61097504	61107856	2	neutral	AA	2.32386	somatic	0	0.131160510076545	0.244656097506012
7	62295748	62344920	3	gain	AAB	0.461047	germline	1	9.40396940011343e-09	5.9578764144419e-10
7	62344920	62378564	3	gain	AAB	1.39535	somatic	0	0.00130493352512374	0.000953370087598659
7	62401856	62407032	5	gain	-	-1	germline	1	0.0143076795504004	0.0366337648837664
7	62438088	62456204	3	gain	AAB	2.51994	germline	1	1.39668645689098e-05	7.99431549977081e-05
7	62518316	62541608	2	neutral	AA	3.13648	somatic	0	0.602281351279189	0.503889640398304
7	62541608	62544196	0	loss	-	-1	germline	1	0.0832670532261865	0.270041282894798
7	62544196	62585604	2	neutral	AA	7.55681	somatic	0	0.584089742593961	0.354591371019127
7	63010036	63017800	3	gain	AAB	0.881625	somatic	0	0.00270725218115746	0.00497009036641149
7	65797312	65823192	3	gain	AAB	0.156077	germline	1	4.3693110132049e-08	4.19636869697371e-09
7	66540068	66560772	2	neutral	AA	36.3786	somatic	0	0.157067737787058	0.518198498719288
7	72759032	72764208	2	neutral	AA	100	germline	1	0.946808797327708	0.724782949405554
7	74058208	74078912	2	neutral	AA	100	somatic	0	0.094294075095654	0.107796540366515
7	74412764	74417940	1	loss	A	-1	germline	1	0.0170596410165007	0.0448764145242918
7	86164872	86397792	2	neutral	AA	14.3293	somatic	0	0.493446906172734	0.313786471291711
7	87308768	87319120	1	loss	A	-1	germline	1	0.00100436194142301	0.0014559176098714
7	92870380	92878144	2	neutral	AA	54.5678	somatic	0	0.114555486028513	0.181030243407392
7	100365228	100378168	2	neutral	AA	36.3786	somatic	0	0.720659720403173	0.887186163508776
7	100730136	100740488	1	loss	A	-1	germline	1	0.00131895220292445	0.0014772329663042
7	100950116	100955292	4	gain	AABB	1.15119	germline	1	0.0143096811033275	0.0366391897644678
7	100955292	100957880	6	gain	-	-1	germline	1	0.0832689558590464	0.270044587407432
7	100957880	100960468	18	gain	AAAAAAAAAAABBBBBBB	13.3974	germline	1	0.0832657848238449	0.270039079902773
7	100960468	100973408	4	gain	AABB	0.367952	germline	1	0.00010780894029468	9.13870955288054e-05
7	101258088	101283968	2	neutral	AA	1.96743	germline	1	0.00244308660984335	0.0138538987793558
7	108155108	108178400	2	neutral	AA	10.2815	germline	1	0.214853139498303	0.12906700856573
7	109801076	109814016	1	loss	A	-1	germline	1	0.000291285167351092	0.000249205482670822
7	110541244	110549008	0	loss	-	-1	germline	1	0.0143115828073869	0.0366455196802909
7	110549008	110626648	2	neutral	AA	54.5678	somatic	0	0.663926226101441	0.955161181475313
7	121007116	121123576	2	neutral	AA	33.7402	somatic	0	0.195316608491181	0.157933839262572
7	125497296	125564584	2	neutral	AA	36.3786	somatic	0	0.691560988522112	0.886164065208215
7	132492660	132609120	2	neutral	AA	7.77282	somatic	0	0.718035971339781	0.88533093430635
7	143846216	143848804	4	gain	-	-1	germline	1	0.0832714927576421	0.270048993470196
7	151002036	151012388	2	neutral	AA	36.3786	somatic	0	0.697012658805538	0.9682271702728
7	152402144	152407320	12	gain	AAAAAAAAAABB	27.2888	germline	1	0.0143067789321585	0.0366325594501639
7	152407320	152409908	3	gain	AAB	3.57577	germline	1	0.0832917902004342	0.270084243861465
7	155326584	155336936	4	gain	AAAB	25.4572	germline	1	0.00281472078325383	0.0222260518159378
7	156599880	156607644	2	neutral	AA	100	somatic	0	0.498747499474674	0.758930887243271
7	158150092	158152680	5	gain	AAABB	10.0146	germline	1	0.0832695900778257	0.270045688918203
7	158592640	158597816	4	gain	AABB	33.2554	germline	1	0.0143094809369205	0.0366385869652378
8	644412	649588	1	loss	A	-1	germline	1	0.0187281304329959	0.0490095325736533
8	4265024	4267612	0	loss	-	-1	germline	1	0.0832670532261865	0.270041282894798
8	6110268	6115444	1	loss	A	-1	germline	1	0.0206707716687902	0.0563331021005991
8	10605624	10615976	2	neutral	AA	36.3786	somatic	0	0.405270959086541	0.355599533635638
8	14146008	14156360	2	neutral	AA	54.5678	somatic	0	0.0760504282202576	0.120826051018238
8	16340632	16350984	1	loss	A	-1	germline	1	0.00197206720599713	0.0018539776686437
8	16405332	16415684	1	loss	A	-1	germline	1	0.00118331316234501	0.00135363316438741
8	25113952	25132068	1	loss	A	-1	germline	1	9.97348415979059e-06	6.60923086659437e-06
8	28193672	28206612	2	neutral	AA	54.5678	somatic	0	0.118904718489473	0.0679296374125293
8	35931792	36141420	2	neutral	AA	20.9282	somatic	0	8.79041334473407e-05	0.00309462330973775
8	37645048	37823620	2	neutral	AA	100	somatic	0	0.879820048649429	0.647682355544119
8	40916280	40924044	1	loss	A	-1	germline	1	0.0206397000860301	0.0562333692314739
8	42518252	42523428	1	loss	A	-1	germline	1	0.0212189721725591	0.058068592645784
8	43237716	43240304	10	gain	AAAAAAABBB	2.37403	germline	1	0.0832676874332268	0.270042384395729
8	43240304	43242892	5	gain	AAABB	1.84953	germline	1	0.0832695900778257	0.270045688918203
8	43654384	43659560	3	gain	AAB	72.1975	germline	1	0.0143562868914103	0.0367426982708207
8	50271900	50282252	3	gain	AAB	100	germline	1	0.000535161632278048	0.000675732184430733
8	59221204	59223792	5	gain	AAABB	100	germline	1	0.0832714927576421	0.270048993470196
8	75261628	75305624	2	neutral	AA	54.6208	somatic	0	0.0736319149169155	0.154613536009942
8	89301528	89324820	2	neutral	AA	36.3788	germline	1	0.865467506564978	0.736513597989665
8	95090884	95111588	2	neutral	AA	36.3786	somatic	0	0.402447281828019	0.567728447128193
8	95251340	95290160	2	neutral	AA	18.1893	somatic	0	0.191665862030365	0.47192674542225
8	96133848	96216664	2	neutral	AA	13.8798	somatic	0	0.750467003335109	0.825426336384737
8	103623520	103711512	2	neutral	AA	18.1952	somatic	0	0.000107510903791373	0.00180740864131756
8	114622520	114630284	1	loss	A	-1	germline	1	0.00538695322983287	0.00923603972337905
8	125559408	125561996	2	neutral	AA	100	somatic	0	0.227246594600706	0.467512950396785
8	136146916	136152092	1	loss	A	-1	germline	1	0.0143151866475209	0.0366554686240097
8	141711116	141716292	2	neutral	AA	10.9211	somatic	0	0.0801735204667595	0.220987246434285
8	142554804	142565156	2	neutral	AA	18.1914	somatic	0	0.174871634991963	0.562760824918582
8	144123132	144128308	4	gain	AAAB	14.8877	germline	1	0.014318691148428	0.0366663247123115
9	6405300	6413064	2	neutral	AA	36.5361	somatic	0	0.923966404185092	0.825667859426885
9	12867536	12872712	2	neutral	AA	100	somatic	0	0.384237392344464	0.724190309422386
9	13687932	13721576	2	neutral	AA	54.5678	somatic	0	0.464156965870672	0.629090205802787
9	15098392	15134624	2	neutral	AA	19.2589	somatic	0	0.151576955920556	0.166090430179202
9	15869616	15911024	2	neutral	AA	100	somatic	0	0.333089970964062	0.30712298655094
9	17034216	17274900	2	neutral	AA	27.2871	somatic	0	0.201338005991443	0.620565678232412
9	19795612	19927600	2	neutral	AA	100	somatic	0	0.414388822686768	0.841480360382521
9	21741788	21778020	2	neutral	AA	100	somatic	0	0.705189772009671	0.677058380526028
9	22497484	22502660	1	loss	A	-1	germline	1	0.017761778016539	0.0468032789379951
9	23361876	23377404	1	loss	A	-1	germline	1	0.000115442993350199	5.2623167401511e-05
9	27393980	27432800	2	neutral	AA	100	somatic	0	0.602372552861122	0.877732736082972
9	27870172	27877936	2	neutral	AA	100	somatic	0	0.931746237745785	0.997667664806446
9	28188496	28191084	4	gain	AAAA	5.2888	somatic	0	0.0832733954726762	0.270052298051706
9	31470080	31529604	2	neutral	AA	46.7603	somatic	0	0.414358462171679	0.706060801070415
9	32523396	32533748	2	neutral	AA	100	somatic	0	0.649977750648181	0.869067496285677
9	33794104	34549800	2	neutral	AA	1.77983	somatic	0	0.000201970566837671	0.00234074323377542
9	35913676	35916264	4	gain	AABB	27.4141	germline	1	0.0832803723957831	0.27006441510312
9	36617612	36656432	2	neutral	AA	13.6427	somatic	0	0.0307640795317159	0.0346260002136973
9	40869696	40872284	4	gain	AABB	10.6685	germline	1	0.0832714927576421	0.270048993470196
9	40913692	40916280	7	gain	AAAAABB	5.91012	germline	1	0.0832689558590464	0.270044587407432
9	40924044	40929220	6	gain	AAAABB	1.16632	germline	1	0.0143072792694521	0.0366331621626269
9	69122892	69125480	0	loss	-	-1	germline	1	0.0832664190230592	0.270040181397146
9	71330456	71371864	2	neutral	AA	63.4014	somatic	0	0.91012744704746	0.50323268380981
9	75753348	75802520	2	neutral	AA	27.2896	somatic	0	0.000206658683272298	0.00156651652292183
9	77621884	77655528	2	neutral	AA	49.7182	somatic	0	0.741281050730245	0.77451893986766
9	79832036	79842388	3	gain	AAB	51.5626	somatic	0	0.00101617859025548	0.00215206080952302
9	86128640	86133816	2	neutral	AA	100	somatic	0	0.974498402549493	0.998980259812812
9	87342412	87381232	2	neutral	AA	36.3813	somatic	0	0.0810826530413604	0.178920781958717
9	94819144	94920076	2	neutral	AA	100	somatic	0	0.151326734038644	0.333053778039422
9	95618836	95626600	2	neutral	AA	100	germline	1	0.280842731386319	0.321696873557767
9	96366768	96382296	2	neutral	AA	54.5678	somatic	0	0.305120546129442	0.468253793431193
9	96804140	96809316	3	gain	-	-1	somatic	0	0.0144375892282779	0.0369098147211488
9	98064496	98077436	2	neutral	AA	54.5678	somatic	0	0.876126766753315	0.920486242719197
9	98545864	98551040	1	loss	A	-1	germline	1	0.0208261856975384	0.0568067078554795
9	98657148	98716672	2	neutral	AA	2.35017	germline	1	0.150162254265531	0.136794382079714
9	100398872	100784484	2	neutral	AA	37.588	somatic	0	0.918878947958765	0.157337170089027
9	103012752	103015340	0	loss	-	-1	germline	1	0.0832708585271236	0.270047891949586
9	109366292	109485340	2	neutral	AA	84.2306	somatic	0	0.393268433466336	0.215557276467888
9	110261740	110269504	1	loss	A	-1	germline	1	0.00810013357756005	0.0144656604193422
9	110994144	111007084	2	neutral	AA	100	somatic	0	0.142815003127428	0.103749901324734
9	113015372	113020548	1	loss	A	-1	germline	1	0.0271877277596009	0.0552077827603327
9	113168064	113193944	2	neutral	AA	21.8272	somatic	0	0.16811538571463	0.169063450809178
9	117909280	117917044	3	gain	AAB	24.1079	somatic	0	0.00298996466298068	0.00578059594597857
9	119896864	119953800	2	neutral	AA	35.9278	germline	1	0.888798676637061	0.848398583841915
9	121641176	121646352	2	neutral	AA	13.642	germline	1	0.0797367778407518	0.106685624546732
9	123737456	123903088	2	neutral	AA	30.669	somatic	0	0.607951029834566	0.594011114680769
9	124570792	124612200	2	neutral	AA	54.5682	somatic	0	0.168386038125929	0.467237567260957
9	127469352	127518524	2	neutral	AA	18.2034	somatic	0	0.359130928704013	0.452932011396067
9	128036124	128059416	2	neutral	AA	17.7614	somatic	0	0.189177290007582	0.226572809491212
9	128328568	128354448	2	neutral	AA	54.5678	somatic	0	0.201393490094512	0.230017616181196
9	128613248	128649480	2	neutral	AA	81.8891	somatic	0	0.160056461159584	0.490876239909434
9	128649480	128652068	0	loss	-	-1	germline	1	0.0832721269920737	0.270050094994087
9	129394824	129397412	4	gain	AABB	10.9335	somatic	0	0.0832797381104798	0.270063313536593
9	129425880	129443996	3	gain	AAB	0.55574	germline	1	5.80785316945387e-06	3.2143757374703e-06
9	130567188	130593068	2	neutral	AA	100	somatic	0	0.427968910692548	0.76094643761771
9	131742140	131747316	3	gain	AAB	11.9334	somatic	0	0.014518131566124	0.0372399283740782
9	133587384	133595148	2	neutral	AA	48.3745	germline	1	0.207340072505653	0.695642435951088
9	135321344	135326520	1	loss	A	-1	somatic	0	0.0269922060451492	0.0544614174101854
9	136887084	137024248	2	neutral	AA	89.6809	somatic	0	0.0703933845485906	0.138282501430395
9	137352924	137355512	5	gain	AAABB	75.822	somatic	0	0.0832702243005181	0.270046790432254
9	137355512	137358100	3	gain	AAB	54.9561	somatic	0	0.0833476288335385	0.270181199755227
9	137358100	137360688	1	loss	A	-1	germline	1	0.083301306006257	0.270100768638515
9	137360688	137394332	2	neutral	AA	7.24472	germline	1	0.0248693699062979	0.00425903393786853
9	137394332	137523732	2	neutral	AA	25.6941	germline	1	0.712615638687949	0.762849930259948
9	137715244	137723008	3	gain	AAB	31.4929	somatic	0	0.0902592562832766	0.139919876447475
10	4666164	4668752	0	loss	-	-1	germline	1	0.0832714927576421	0.270048993470197
10	18553372	18574076	3	gain	-	-1	somatic	0	1.08209612197522e-06	3.72869930265196e-07
10	38483560	38488736	4	gain	-	-1	germline	1	0.0143119831945427	0.0366422038907784
10	38488736	38491324	6	gain	-	-1	germline	1	0.0832689558590464	0.270044587407432
10	38491324	38524968	3	gain	-	-1	germline	1	4.26969979448152e-10	1.03210773261253e-11
10	38524968	38530144	17	gain	-	-1	germline	1	0.0143064787371911	0.0366325594501639
10	38574140	38576728	3	gain	-	-1	germline	1	0.0832917902004342	0.270084243861465
10	38576728	38581904	5	gain	-	-1	germline	1	0.0143074794086914	0.0366334635221122
10	38783768	38835528	3	gain	-	-1	germline	1	5.33388868185453e-14	3.33066907387547e-16
10	39557580	39562756	1	loss	A	-1	germline	1	0.0186788086117598	0.0500575717199647
10	41827256	41842784	2	neutral	AA	4.65248	germline	1	0.904952425141388	0.999931222121707
10	41855724	41915248	41	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBB	13.7275	somatic	0	9.63489744774597e-07	2.25114791030379e-07
10	42300860	42321564	3	gain	AAB	1.43876	germline	1	9.72165977038992e-07	2.33745485411774e-07
10	46514124	46560708	4	gain	AABB	0.390526	germline	1	4.27007152693138e-12	2.54241072639161e-14
10	47295700	47383692	2	neutral	AA	1.44887	somatic	0	0.560158186475251	0.844494845986628
10	49795708	49803472	1	loss	A	-1	germline	1	0.00538493889475446	0.00885315990531355
10	52254308	52259484	1	loss	A	-1	germline	1	0.0203200511968223	0.0551699340378945
10	52259484	52311244	2	neutral	AA	54.7424	somatic	0	0.981813342057924	0.772885720345854
10	58636316	58659608	2	neutral	AA	36.3786	germline	1	0.4172158953817	0.309329550184425
10	70297844	70313372	2	neutral	AA	100	somatic	0	0.535965418664839	0.391572927737369
10	75383264	75424672	2	neutral	AA	36.7139	somatic	0	0.697082281529416	0.791264850400245
10	77518364	77601180	2	neutral	AA	100	somatic	0	0.0541592545704457	0.144426722074414
10	83672628	83690744	2	neutral	AA	54.5678	somatic	0	0.840016215674018	0.969637726712473
10	97148344	97174224	2	neutral	AA	21.888	germline	1	0.726632763638593	0.743046103552827
10	97295860	97306212	2	neutral	AA	54.5678	somatic	0	0.169167518424378	0.353382658815912
10	97759112	97784992	2	neutral	AA	100	somatic	0	0.527622406263622	0.894072059525855
10	102888528	102940288	2	neutral	AA	15.5909	somatic	0	0.619554168156694	0.698550657472955
10	105781912	105794852	2	neutral	AA	54.5678	somatic	0	0.125744864089188	0.215212518433246
10	106705828	106713592	2	neutral	AA	54.5679	somatic	0	0.171400022803102	0.45393469557727
10	110489484	110559360	2	neutral	AA	100	somatic	0	0.131662532328841	0.0331238069704772
10	111685140	111708432	2	neutral	AA	100	somatic	0	0.383661110873521	0.479354405532388
10	111747252	111855948	2	neutral	AA	100	somatic	0	0.205047202025348	0.407706067981082
10	112849740	112878208	2	neutral	AA	100	somatic	0	0.795558732187483	0.708755558922922
10	114669104	114674280	2	neutral	AA	100	germline	1	0.369185986758105	0.717537478106523
10	114694984	114728628	2	neutral	AA	18.9424	somatic	0	0.111403574875352	0.257591177522973
10	116516936	116573872	2	neutral	AA	51.5821	somatic	0	0.0336405126246168	0.0696162031836719
10	119288684	119314564	2	neutral	AA	19.1794	germline	1	0.786554852473608	0.701976860586087
10	122557328	122575444	2	neutral	AA	100	somatic	0	0.243606088936617	0.626133011908479
10	123253500	123256088	5	gain	AAABB	22.7387	germline	1	0.0832714927576421	0.270048993470196
10	127795440	127798028	4	gain	AAAA	55.5531	germline	1	0.0832829095761294	0.270068821402028
10	128463144	128465732	16	gain	AAAAAAAAABBBBBBB	100	germline	1	0.0832664190230592	0.270040181397145
10	129969360	130078056	2	neutral	AA	14.2814	somatic	0	0.136843504776881	0.160094198105087
10	131175368	131177956	3	gain	AAB	5.94464	somatic	0	0.0832886184608429	0.270078735766442
10	131255596	131315120	2	neutral	AA	100	somatic	0	0.371361885929542	0.502982598671127
10	132360672	132365848	3	gain	AAA	100	somatic	0	0.217441469970462	0.690937370005152
10	132741108	132777340	2	neutral	AA	22.1777	somatic	0	0.0228613973247905	0.0445720229116648
10	133437280	133566680	3	gain	AAB	0.547867	germline	1	3.44350458781728e-31	0
10	133566680	133587384	3	gain	AAB	-1	somatic	0	NA	NA
10	133621028	133797422	3	gain	AAB	-1	somatic	0	NA	NA
11	2044520	2065224	3	gain	AAB	13.0483	somatic	0	9.73156800060077e-07	2.31185493526631e-07
11	2303320	2355080	2	neutral	AA	53.8107	somatic	0	0.179155798508876	0.228739851949548
11	13473128	13478304	2	neutral	AA	100	somatic	0	0.747911081744346	0.795474321245326
11	15253672	15274376	2	neutral	AA	100	somatic	0	0.218624879796772	0.231756877369649
11	18074592	18079768	1	loss	A	-1	somatic	0	0.025845975442664	0.053972619206287
11	18079768	18242812	2	neutral	AA	18.7439	somatic	0	0.248724955727093	0.739010798390001
11	18923456	18941572	3	gain	AAB	2.61379	germline	1	4.63709814571041e-06	1.6963917162105e-06
11	22492308	22507836	2	neutral	AA	46.2926	somatic	0	0.314360511975611	0.714178988763134
11	23079784	23092724	2	neutral	AA	100	somatic	0	0.657194127588578	0.706314775124381
11	26656400	26671928	2	neutral	AA	54.5678	germline	1	0.552632640897466	0.235188381322938
11	32849484	32872776	2	neutral	AA	100	somatic	0	0.208350418354116	0.410186477043923
11	38493912	38506852	2	neutral	AA	100	somatic	0	0.595690661644699	0.671425507572328
11	39715448	39772384	2	neutral	AA	34.5295	somatic	0	0.618749136767741	0.693848108252125
11	45755840	45802424	2	neutral	AA	36.3786	somatic	0	0.376767594710933	0.45554856270535
11	48838148	48845912	3	gain	AAB	7.10519	germline	1	0.00270451212611812	0.00496616747433976
11	50678216	50812792	2	neutral	AA	0.722573	somatic	0	0.141100670925996	0.201543652542477
11	55116636	55124400	1	loss	A	-1	germline	1	0.00491502137998486	0.00944389705272208
11	55220156	55318500	2	neutral	AA	6.45467	germline	1	0.14124008744178	0.435219525298783
11	55598004	55685996	1	loss	A	-1	germline	1	3.62769767267782e-20	0
11	58693252	58742424	2	neutral	AA	45.069	somatic	0	0.67887661333806	0.755704756104077
11	63069560	63142024	2	neutral	AA	80.9468	somatic	0	0.152477846724507	0.197864144703267
11	64386852	64410144	2	neutral	AA	54.5683	germline	1	0.979493687037554	0.851230096335816
11	68789040	69009020	2	neutral	AA	12.2662	somatic	0	0.617326265005963	0.445155640008797
11	70370308	70372896	4	gain	AAAB	10.0031	somatic	0	0.0832740297188472	0.270053399585435
11	80101188	80279760	2	neutral	AA	36.3849	somatic	0	2.5834427765173e-05	0.000403237249011701
11	81314960	81408128	2	neutral	AA	27.229	somatic	0	0.370031849783653	0.218653446878119
11	81788564	81806680	1	loss	A	-1	germline	1	1.88634939694976e-05	6.72694442060973e-06
11	86185576	86294272	2	neutral	AA	19.0746	somatic	0	0.269051312710902	0.294180700191144
11	91855884	91892116	2	neutral	AA	100	somatic	0	0.127336839897641	0.503429265307215
11	101216680	101247736	2	neutral	AA	6.67412	germline	1	0.129087426379449	0.416508340887431
11	102730660	102733248	3	gain	AAB	6.46826	somatic	0	0.0832879841246653	0.270077634157277
11	103641636	103664928	2	neutral	AA	100	somatic	0	0.296473450072763	0.394140242708158
11	104399920	104402508	0	loss	-	-1	somatic	0	0.0832651506285434	0.270037978411681
11	120569744	120613740	2	neutral	AA	100	somatic	0	0.269716606785689	0.324502192827704
12	758284	766048	1	loss	A	-1	germline	1	0.00383013055306214	0.00850835036949382
12	2254148	2256736	13	gain	-	-1	germline	1	0.0832664190230592	0.270040181397145
12	30085500	30090676	1	loss	A	-1	somatic	0	0.0242411832999549	0.0546957182862733
12	30323596	30328772	1	loss	A	-1	germline	1	0.020378528305103	0.0553874380418801
12	34692140	34697316	0	loss	-	-1	germline	1	0.0143434444349703	0.0367439068746414
12	37595876	37601052	1	loss	A	-1	germline	1	0.0161047504314321	0.0420952546776925
12	37601052	37616580	2	neutral	AA	3.69098	germline	1	0.70358452379108	0.905974714749848
12	37621756	37624344	0	loss	-	-1	germline	1	0.0832657848238449	0.270039079902774
12	37624344	38429212	2	neutral	AA	0.870277	somatic	0	0.192586620343071	0.122725540993823
12	39710272	39715448	1	loss	A	-1	somatic	0	0.0203244080676581	0.054659451556308
12	41045680	41076736	2	neutral	AA	54.5678	somatic	0	0.592521445234738	0.60220789408995
12	44826748	44844864	2	neutral	AA	55.0924	somatic	0	0.189736650778398	0.485032228885512
12	51664244	51806584	2	neutral	AA	26.7943	somatic	0	0.574209094983571	0.637900353648936
12	53022944	53033296	2	neutral	AA	100	somatic	0	0.389022505813286	0.566158537759129
12	53739820	54003796	2	neutral	AA	100	somatic	0	0.00207325188218053	0.00686302793332694
12	60336632	60352160	2	neutral	AA	100	somatic	0	0.23878587791913	0.366514731536379
12	61019864	61289016	2	neutral	AA	13.4529	somatic	0	0.0595038031707656	0.167996629868313
12	62448440	62639952	2	neutral	AA	36.3786	somatic	0	0.962919923937397	0.971124466589126
12	65541100	65561804	2	neutral	AA	100	somatic	0	0.223169291974214	0.790828121310498
12	66276092	66309736	2	neutral	AA	70.038	somatic	0	0.823341379970331	0.974601367218376
12	70484180	70491944	2	neutral	AA	100	somatic	0	0.0826765103595473	0.186596995168963
12	74800964	74834608	2	neutral	AA	100	somatic	0	0.849380281157705	0.473395565427656
12	77236272	77326852	2	neutral	AA	36.3786	somatic	0	0.112081855984553	0.279072918638539
12	81294256	81320136	2	neutral	AA	36.3789	germline	1	0.952301296432942	0.958126349512854
12	90090868	90098632	1	loss	A	-1	germline	1	0.00501309802267402	0.00944169528240957
12	90828448	90843976	2	neutral	AA	36.3786	somatic	0	0.783860741883117	0.689764549481696
12	92515824	92761684	2	neutral	AA	24.6212	somatic	0	0.560444546093835	0.53769866045598
12	103129212	103157680	2	neutral	AA	27.3008	somatic	0	0.0135272963685309	0.00438039330732964
12	112417544	112539180	2	neutral	AA	15.6395	somatic	0	0.227670234068016	0.321656274125804
12	113934112	114019516	2	neutral	AA	100	somatic	0	0.754234174269703	0.973275882840547
12	114192912	114200676	1	loss	A	-1	germline	1	0.00571681418868874	0.00950584668326282
12	118571808	119097172	2	neutral	AA	7.18995	somatic	0	0.00098907669668815	0.0246148805726042
12	120924300	120929476	1	loss	A	-1	somatic	0	0.0212498113935809	0.0580811747612339
12	124438804	124441392	5	gain	AAABB	12.8868	germline	1	0.0832702243005181	0.270046790432254
12	125015928	125114272	2	neutral	AA	12.2714	somatic	0	0.0346895266580645	0.104605081288876
12	127050096	127169144	2	neutral	AA	7.36195	somatic	0	0.448245977962145	0.812830168295254
13	22018704	22023880	1	loss	A	-1	germline	1	0.0174641386331511	0.0462780059124265
13	35957672	35960260	4	gain	-	-1	germline	1	0.0832746639689313	0.270054501122445
13	50494468	50502232	1	loss	A	-1	germline	1	0.0186975995321273	0.0501074114016946
13	52313832	52319008	3	gain	-	-1	germline	1	0.0143376285337967	0.0366907611966105
13	63028152	63059208	3	gain	-	-1	somatic	0	6.73524770787536e-07	9.4768652503241e-07
13	63059208	63066972	4	gain	-	-1	germline	1	0.00270088089736764	0.00495992123106848
13	66599592	66604768	1	loss	A	-1	germline	1	0.0168320696393423	0.0442355235603702
13	67526096	67528684	4	gain	-	-1	germline	1	0.0832797381104798	0.270063313536593
13	68669992	68693284	1	loss	A	-1	germline	1	1.07246259555127e-06	1.87424192166219e-07
13	82590844	82598608	0	loss	-	-1	germline	1	0.0143132845210405	0.036651850552898
13	86348620	86390028	2	neutral	AA	100	somatic	0	0.87785494139445	0.972405493247383
13	88623472	88628648	2	neutral	AA	54.5678	somatic	0	0.139452937690642	0.301636304984932
13	89283412	89319644	2	neutral	AA	100	somatic	0	0.314709824175371	0.150008737555028
13	90209916	90212504	0	loss	-	-1	germline	1	0.0832733954726762	0.270052298051707
13	91571204	91573792	1	loss	A	-1	somatic	0	0.123046936059519	0.333463547597071
13	93048952	93051540	2	neutral	AA	100	germline	1	0.225974738370859	0.466048396101152
13	95510140	95517904	2	neutral	AA	21.8313	somatic	0	0.225938927856826	0.485122303665624
13	99798456	99938208	2	neutral	AA	30.7996	somatic	0	0.33549531504739	0.414805191819901
13	100823304	100831068	2	neutral	AA	54.5678	somatic	0	0.867341987775752	0.745303757627797
13	103025692	103030868	2	neutral	AA	100	somatic	0	0.776182711375989	0.899165265984803
13	103144740	103168032	2	neutral	AA	54.5678	somatic	0	0.154151182731451	0.405192106964881
13	104560376	104565552	2	neutral	AA	36.3786	somatic	0	0.063711909036204	0.0939686677555991
13	105644748	105683568	2	neutral	AA	9.09575	somatic	0	0.953205623670875	0.990048197828917
13	106755000	106762764	2	neutral	AA	54.5679	somatic	0	0.903281597001657	0.992278534517384
13	107389060	107409764	2	neutral	AA	36.3786	somatic	0	0.671109546802859	0.947365860956993
13	114102332	114110096	2	neutral	AA	21.1848	germline	1	0.0527882482011987	0.08677538178771
14	16092184	16094772	9	gain	-	-1	germline	1	0.0832683216441801	0.270043485899941
14	18659480	18693124	4	gain	AABB	39.111	germline	1	0.000532172848046987	0.000671101899106463
14	21482988	21488164	1	loss	A	-1	germline	1	0.0267912356563789	0.0536599114774936
14	34347936	34350524	0	loss	-	-1	germline	1	0.0832689558590464	0.270044587407433
14	37391424	37414716	2	neutral	AA	54.5679	somatic	0	0.476511574720684	0.243546083319732
14	37663164	37668340	1	loss	A	-1	germline	1	0.0264243630015926	0.0557230997968055
14	40318452	40321040	2	neutral	AA	100	germline	1	0.857665197649192	0.921043517256729
14	40323628	40419384	2	neutral	AA	54.5873	germline	1	0.199876941112047	0.0459363051063055
14	46954084	46982552	2	neutral	AA	100	somatic	0	0.936425377153762	0.986425217549139
14	49019308	49024484	1	loss	A	-1	germline	1	0.0193654581855159	0.0515654488588722
14	53711352	53788992	2	neutral	AA	28.7176	somatic	0	0.0128593076282126	0.094918283215866
14	56622852	56679788	2	neutral	AA	100	germline	1	0.860525615669363	0.812654167179288
14	65383232	65419464	2	neutral	AA	100	somatic	0	0.728480963802513	0.763438141065974
14	65419464	65849072	2	neutral	AA	36.9274	somatic	0	0.000162649132646453	0.00490883817464727
14	69404984	69469684	2	neutral	AA	21.9022	somatic	0	0.516129756609276	0.523225418906061
14	73545784	73556136	1	loss	A	-1	germline	1	0.0212428762427701	0.053365059318168
14	73814936	73884812	2	neutral	AA	100	somatic	0	0.5300382048949	0.572161092148402
14	74042680	74172080	2	neutral	AA	22.6519	somatic	0	0.000929961014422514	0.000122293875605251
14	82031836	82034424	1	loss	A	-1	germline	1	0.0832886184608429	0.270078735766443
14	82223348	82339808	2	neutral	AA	91.7119	somatic	0	0.0249996782206712	0.0527627770581823
14	83921076	84159172	2	neutral	AA	37.5446	somatic	0	0.824118961982747	0.587537426227843
14	85533400	85564456	2	neutral	AA	54.5678	somatic	0	0.237830759782711	0.491011898606164
14	86239924	86270980	2	neutral	AA	27.2887	somatic	0	0.332346693628134	0.181571314990956
14	87275124	87308768	2	neutral	AA	22.8562	somatic	0	0.490727527324956	0.656071335025272
14	89842420	89886416	2	neutral	AA	21.8271	somatic	0	0.826994673017644	0.725733243109302
14	90445424	90574824	2	neutral	AA	12.4913	somatic	0	0.166386442065408	0.135455629404284
14	92797916	94399888	2	neutral	AA	27.2839	somatic	0	0.803904185607989	0.621820506655533
14	99213568	99229096	2	neutral	AA	27.3217	somatic	0	0.679928434667231	0.764094870768061
14	99927856	99930444	9	gain	AAAAAABBB	12.0657	germline	1	0.0832683216441801	0.270043485899941
14	100525684	100528272	3	gain	AAB	9.33668	somatic	0	0.0832873497924012	0.270076532551391
14	104860584	104863172	3	gain	AAB	50.5564	somatic	0	0.0832879841246653	0.270077634157277
15	0	17080800	4	gain	AAAB	-1	germline	1	NA	NA
15	17080800	17083388	26	gain	-	-1	germline	1	0.0832651506285434	0.27003797841168
15	17083388	20271804	4	gain	AAAB	-1	germline	1	0.695524876980045	0.984767610492205
15	20271804	20274392	4	gain	AAAB	12.6411	germline	1	0.0832714927576421	0.270048993470196
15	20274392	20339092	4	gain	AAAB	-1	germline	1	NA	NA
15	20339092	20344268	11	gain	AAAAAAABBBB	18.9568	germline	1	0.0143067789321585	0.0366328608053109
15	20344268	20393440	4	gain	AAAB	3.05052	germline	1	9.64132152374133e-07	2.252629910382e-07
15	20393440	20396028	4	gain	AAAB	-1	germline	1	NA	NA
15	20396028	20672944	4	gain	AAAB	1.02591	germline	1	4.25023420122445e-10	1.02594599482586e-11
15	20672944	22225744	4	gain	AAAB	-1	germline	1	NA	NA
15	22225744	22277504	3	gain	AAB	1.58681	germline	1	4.63227905725985e-06	1.6966845980404e-06
15	23405872	23439516	2	neutral	AA	36.3837	somatic	0	0.785126593683286	0.955134604171039
15	23439516	23442104	3	gain	AAB	14.1846	somatic	0	0.0832917902004342	0.270084243861465
15	25522856	25528032	2	neutral	AA	73.9633	somatic	0	0.236136866939375	0.717907911580639
15	25528032	25530620	3	gain	AAA	44.6488	germline	1	0.0832848125024796	0.270072126160648
15	25530620	25538384	2	neutral	AA	54.5678	somatic	0	0.294666530062935	0.444727069459535
15	35962848	35970612	2	neutral	AA	100	somatic	0	0.738345135112819	0.961600855653698
15	38869172	38882112	2	neutral	AA	100	germline	1	0.509422014966916	0.530575588206915
15	41012036	41239780	2	neutral	AA	9.4639	somatic	0	0.00109327266849005	0.00319259912810554
15	47042076	47194768	2	neutral	AA	6.36927	somatic	0	0.00945961310745134	0.0600156525625731
15	48320548	48455124	2	neutral	AA	51.1496	somatic	0	0.300826448590169	0.409426402880156
15	48649224	48677692	2	neutral	AA	100	somatic	0	0.369457798026246	0.659982000191233
15	54992412	54995000	2	neutral	AA	84.8276	somatic	0	0.0900723486156444	0.281666653429145
15	55608356	55660116	2	neutral	AA	27.2895	somatic	0	0.610916552131423	0.766515050632976
15	57546768	57673580	2	neutral	AA	54.5678	somatic	0	0.538318517480844	0.281687128553351
15	58558676	58576792	2	neutral	AA	40.0038	somatic	0	0.637261775866923	0.593534364402081
15	63455172	64384264	2	neutral	AA	21.5292	somatic	0	0.391811768403765	0.13145209932989
15	72425180	72479528	2	neutral	AA	100	somatic	0	0.608261880165606	0.773058399434974
15	72743504	72764208	2	neutral	AA	100	somatic	0	0.776467131932749	0.347737901024395
15	74521460	74816492	2	neutral	AA	21.7435	somatic	0	0.0281636110859308	0.0344889854666141
15	76591860	76602212	1	loss	A	-1	germline	1	0.00165774997844449	0.00157326789797552
15	81120860	81208852	2	neutral	AA	100	somatic	0	0.44062196576339	0.841487729647594
15	90072752	90121924	2	neutral	AA	39.948	somatic	0	0.87055852216455	0.978011072381139
15	91358988	91364164	2	neutral	AA	100	somatic	0	0.254362098582452	0.734338522273453
15	91747188	91752364	3	gain	AAB	13.5141	somatic	0	0.0146576446037554	0.037660829638732
15	94242020	94247196	1	loss	A	-1	somatic	0	0.0274109367138153	0.0561691482998671
15	97715116	97722880	2	neutral	AA	100	somatic	0	0.89420458794651	0.98519326200023
15	99472368	99487896	2	neutral	AA	100	somatic	0	0.445426289840558	0.574833848208892
15	100709432	100712020	4	gain	AAAA	58.7337	somatic	0	0.0832810066849997	0.270065516672928
16	846276	848864	4	gain	AAAA	27.982	germline	1	0.0832797381104798	0.270063313536593
16	913564	916152	3	gain	AAB	14.0322	somatic	0	0.0833025748469009	0.270102971997877
16	1024848	1027436	6	gain	AAAABB	37.3867	germline	1	0.0832689558590464	0.270044587407432
16	1552800	1596796	2	neutral	AA	54.5678	somatic	0	0.927264126202776	0.954476180685612
16	3630964	3636140	3	gain	AAB	58.3343	somatic	0	0.0146269537993574	0.0375886453542686
16	8561104	8563692	3	gain	AAB	5.64823	somatic	0	0.083297499578257	0.270094158639138
16	8563692	8566280	3	gain	AAB	23.7798	somatic	0	0.0854499586408968	0.273814252057378
16	8566280	8641332	2	neutral	AA	50.3086	somatic	0	0.671673782870133	0.918379749215846
16	9223632	9575600	2	neutral	AA	14.654	germline	1	0.000163598629231934	0.00475831857823827
16	10297652	10313180	2	neutral	AA	36.7804	somatic	0	0.660502373511755	0.744350916703804
16	11589064	11591652	1	loss	A	-1	germline	1	0.0835413951664883	0.270517436657634
16	19026976	19039916	2	neutral	AA	54.5678	germline	1	0.356156312413371	0.433593168780458
16	24774924	24875856	2	neutral	AA	10.4257	somatic	0	0.077579462664957	0.138060373000316
16	26371720	26376896	3	gain	AAB	30.5639	somatic	0	0.0143472559811914	0.0367242713714078
16	26648636	26656400	2	neutral	AA	54.5678	germline	1	0.326581238723942	0.245550570724239
16	27137768	27140356	3	gain	AAB	14.8802	somatic	0	0.083297499578257	0.270094158639138
16	28548228	28939016	2	neutral	AA	61.9475	somatic	0	0.0599942786237403	0.117956518654796
16	34063256	34065844	33	gain	AAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBB	22.6328	germline	1	0.0832651506285434	0.27003797841168
16	34068432	34083960	2	neutral	AA	8.67424	germline	1	0.00196197922663087	0.00837579440359193
16	34083960	34086548	22	gain	AAAAAAAAAAAAAAABBBBBBB	34.3559	germline	1	0.0832657848238449	0.270039079902773
16	34086548	34094312	3	gain	AAB	62.1356	germline	1	0.00370477328443086	0.00838685680033435
16	34094312	34096900	4	gain	AAAB	14.4741	germline	1	0.0832714927576421	0.270048993470196
16	34096900	34099488	16	gain	AAAAAAAAAABBBBBB	8.09482	germline	1	0.0832664190230592	0.270040181397145
16	34099488	34161600	2	neutral	AA	4.06353	germline	1	0.00458334878323171	0.00571786197802138
16	34192656	34210772	2	neutral	AA	2.32779	germline	1	0.00523713078452744	0.0390832852353765
16	34210772	34213360	4	gain	AAAB	3.41429	germline	1	0.0832733954726762	0.270052298051706
16	34948352	34953528	4	gain	AAAA	0.952803	germline	1	0.0143095810198152	0.0366367786196102
16	34956116	34958704	3	gain	AAA	4.33194	germline	1	0.0852765373014389	0.273513946005557
16	35980964	36089660	2	neutral	AA	1.67058	somatic	0	0.104349895007411	0.150009609245879
16	36120716	36123304	4	gain	-	-1	germline	1	0.0832746639689313	0.270054501122445
16	36123304	36125892	6	gain	-	-1	germline	1	0.0832689558590464	0.270044587407432
16	46617644	46635760	2	neutral	AA	54.5705	somatic	0	0.0483113549714216	0.123038692787992
16	49128004	49226348	2	neutral	AA	54.5711	somatic	0	0.295273474927636	0.560920101124758
16	50437532	50486704	2	neutral	AA	36.3925	somatic	0	0.312269575311159	0.526540293549747
16	57290556	57295732	1	loss	A	-1	somatic	0	0.0264235934396992	0.0538268028091576
16	59236732	59260024	2	neutral	AA	27.2839	somatic	0	0.528199280584734	0.219154289473234
16	59775036	59782800	2	neutral	AA	36.3786	somatic	0	0.0436314622529696	0.11991152210294
16	62510552	62518316	1	loss	A	-1	somatic	0	0.00535774389743079	0.00959728326788722
16	66995556	67011084	2	neutral	AA	54.5678	somatic	0	0.401820107158221	0.497045211582595
16	76503868	76511632	1	loss	A	-1	germline	1	0.00661776222640616	0.0105618266390745
16	76871364	76876540	3	gain	AAB	5.6498	germline	1	0.0144337565235707	0.0369854161159896
16	78336172	78351700	1	loss	A	-1	germline	1	8.49054151458259e-05	4.58649681059908e-05
16	78657084	78662260	2	neutral	AA	100	somatic	0	0.371834655967065	0.797810978751157
16	78882240	78900356	2	neutral	AA	65.6477	somatic	0	0.95875811265335	0.987471633767009
16	84107412	84115176	2	neutral	AA	54.5678	somatic	0	0.635748969577553	0.647184348024825
16	85517872	85520460	3	gain	AAB	33.1979	somatic	0	0.083289252800934	0.270079837378887
16	86418496	86421084	3	gain	AAB	67.7891	somatic	0	0.0832968651872886	0.270093056984055
16	87795312	87797900	0	loss	-	-1	germline	1	0.0832651506285434	0.270037978411681
16	89907120	89909708	3	gain	AAB	6.21732	somatic	0	0.083294327662552	0.270088650396521
17	21291476	21304416	4	gain	AABB	0.247335	germline	1	0.000107585016233252	9.08512276674989e-05
17	21853072	21858248	6	gain	-	-1	germline	1	0.0143073793387631	0.0366334635221122
17	21858248	21871188	3	gain	-	-1	germline	1	0.000107646938683175	9.08848654034289e-05
17	21871188	21873776	5	gain	-	-1	germline	1	0.0832695900778257	0.270045688918203
17	21873776	21881540	4	gain	-	-1	germline	1	0.00271017770221478	0.0049904244453105
17	21881540	21884128	5	gain	-	-1	germline	1	0.0832702243005181	0.270046790432254
17	21959180	21961768	3	gain	-	-1	germline	1	0.083294327662552	0.270088650396521
17	21966944	21990236	11	gain	-	-1	germline	1	0.000107528049139616	9.0813866276962e-05
17	22124812	22158456	6	gain	AAAABB	0.316622	germline	1	4.24156597367602e-10	1.02261532575199e-11
17	26783212	26790976	4	gain	-	-1	germline	1	0.00270053443022325	0.0049586361341053
17	26790976	26809092	3	gain	-	-1	germline	1	2.21412437921151e-05	1.23209162236071e-05
17	26809092	26811680	6	gain	-	-1	germline	1	0.0832689558590464	0.270044587407432
17	26814268	26822032	4	gain	-	-1	germline	1	0.00270073501151448	0.00495937043784889
17	26822032	26827208	5	gain	-	-1	germline	1	0.0143073793387631	0.0366334635221122
17	26827208	26842736	4	gain	-	-1	germline	1	2.21197272500503e-05	1.23099753186473e-05
17	26842736	26866028	3	gain	-	-1	germline	1	1.01383335319458e-06	2.86531924964528e-07
17	26866028	26868616	10	gain	-	-1	germline	1	0.0832683216441801	0.270043485899941
17	26868616	26878968	4	gain	-	-1	germline	1	0.000532705164269958	0.000672405990943203
17	26935904	26941080	31	gain	AAAAAAAAAAAAAAAAAAAABBBBBBBBBBB	11.4695	germline	1	0.0143061785477802	0.0366316553977367
17	31850516	31992856	2	neutral	AA	2.95249	somatic	0	0.0518279325176296	0.14431498776866
17	39215964	39441120	2	neutral	AA	20.785	somatic	0	0.967558219851023	0.694015279964824
17	42130052	42161108	2	neutral	AA	20.7592	somatic	0	0.825401103810162	0.99996159664731
17	43022912	43180780	2	neutral	AA	14.152	somatic	0	0.0995855372526446	0.203951628320339
17	48625932	48700984	2	neutral	AA	54.5678	somatic	0	0.841402573364873	0.881503427508831
17	57375960	57404428	2	neutral	AA	15.5908	somatic	0	0.00928737398197648	0.0121022692188629
17	59451536	59454124	4	gain	-	-1	germline	1	0.0832822752751728	0.270067719822382
17	66796280	66798868	7	gain	AAAABBB	38.2967	germline	1	0.0832689558590464	0.270044587407432
17	71226936	71250228	2	neutral	AA	54.5777	somatic	0	0.932412317913686	0.92963345589793
17	81529764	81532352	4	gain	AAAA	4.38826	somatic	0	0.0832746639689313	0.270054501122445
17	82251816	82585668	2	neutral	AA	18.0929	somatic	0	0.464868126368163	0.635003958215775
17	82585668	82588256	6	gain	AAAABB	29.5107	germline	1	0.0832689558590464	0.270044587407432
18	3157360	3188416	2	neutral	AA	100	somatic	0	0.571223372187862	0.981220442717166
18	3615436	3620612	2	neutral	AA	13.0321	somatic	0	0.203554148855342	0.495995538293108
18	5305400	5310576	1	loss	A	-1	germline	1	0.0224440155779046	0.0579734039652507
18	5719480	5724656	2	neutral	AA	100	somatic	0	0.0727543470328366	0.111795638149627
18	7624248	7644952	2	neutral	AA	100	somatic	0	0.814617178930299	0.725139196405274
18	11319912	11325088	2	neutral	AA	100	somatic	0	0.784986841432762	0.873825559591519
18	11801280	11832336	2	neutral	AA	36.3786	somatic	0	0.303644378277443	0.278381727058416
18	12023848	12091136	2	neutral	AA	2.12149	somatic	0	0.397317047855951	0.590093189247292
18	22921916	23040964	2	neutral	AA	100	somatic	0	0.219931437444651	0.055604643038218
18	24032168	24037344	2	neutral	AA	100	somatic	0	0.502520620010397	0.820893696617218
18	26552880	26565820	2	neutral	AA	54.5678	somatic	0	0.125892358082894	0.101274612840974
18	27756300	27774416	2	neutral	AA	100	somatic	0	0.857935884812536	0.983045445423567
18	28191084	28211788	2	neutral	AA	100	somatic	0	0.430065101356733	0.45192055606544
18	40771352	40786880	2	neutral	AA	100	somatic	0	0.0569561908302528	0.0301841562568889
18	41418352	41436468	2	neutral	AA	54.5678	somatic	0	0.453978245427655	0.444410350915823
18	47417336	47443216	2	neutral	AA	100	somatic	0	0.187123203268821	0.195254704621125
18	49065892	49068480	3	gain	AAB	11.4731	somatic	0	0.0833089192849558	0.270113988991491
18	56584032	56612500	2	neutral	AA	54.5678	somatic	0	0.803795796089147	0.79601636741311
18	57277616	57282792	1	loss	A	-1	somatic	0	0.0244740333647986	0.0564711410866333
18	59710336	59728452	2	neutral	AA	54.5678	somatic	0	0.8982875346208	0.469683567034176
18	64544720	64547308	1	loss	A	-1	germline	1	0.085696992295652	0.274236196967644
18	66584064	66599592	2	neutral	AA	100	somatic	0	0.377107023529784	0.252130356318464
18	69539560	69549912	1	loss	A	-1	germline	1	0.00162232931092015	0.00156789357606424
18	69663784	69697428	2	neutral	AA	100	somatic	0	0.107185480615548	0.31355448438682
18	70385836	70393600	2	neutral	AA	36.3786	somatic	0	0.60412592481844	0.801879310423688
18	70564408	70572172	2	neutral	AA	27.2839	germline	1	0.0921160851222081	0.160892047128437
18	71462444	71542672	2	neutral	AA	38.6544	somatic	0	0.368120285985892	0.257256307785988
18	71980044	72295780	2	neutral	AA	100	somatic	0	0.945136132613995	0.422430314158011
18	74614628	74617216	4	gain	-	-1	germline	1	0.0832797381104798	0.270063313536593
18	76925712	76977472	2	neutral	AA	6.3988	somatic	0	0.991386403803432	0.820418114018994
18	77251800	77306148	2	neutral	AA	9.33664	germline	1	0.546887109918094	0.469954842084435
18	79200564	79203152	3	gain	AAB	100	somatic	0	0.0832917902004342	0.270084243861465
19	5828176	5851468	2	neutral	AA	21.8271	somatic	0	0.57201171872955	0.768417923002103
19	7448264	7450852	7	gain	AAAAABB	21.1813	germline	1	0.0832689558590464	0.270044587407432
19	7450852	7453440	5	gain	AAABB	14.5969	germline	1	0.0832714927576421	0.270048993470196
19	7549196	7575076	2	neutral	AA	54.5873	somatic	0	0.189116415386594	0.241373692208624
19	8838020	8871664	2	neutral	AA	43.1863	somatic	0	0.0106214996197527	0.0328029295680363
19	8871664	8902720	2	neutral	AA	1.03682	somatic	0	1.3745979834905e-07	1.22364026433619e-06
19	8902720	8918248	2	neutral	AA	3.94102	germline	1	0.425259532804857	0.725698695842286
19	8918248	8920836	1	loss	A	-1	somatic	0	0.124750699261054	0.335971702825539
19	14019196	14021784	1	loss	A	-1	somatic	0	0.0834530433458536	0.270364162978107
19	18799232	18951924	2	neutral	AA	21.5858	somatic	0	0.0968085112127	0.162204664730894
19	20647064	21154312	2	neutral	AA	7.79541	germline	1	0.0825595000855303	0.267706199684486
19	21154312	21156900	2	neutral	AA	-1	germline	1	NA	NA
19	21156900	22070464	2	neutral	AA	24.6504	somatic	0	3.21925338182018e-07	2.81460173156001e-05
19	23465396	23470572	3	gain	AAB	6.22584	somatic	0	0.0143302112661454	0.0366931754494813
19	24329788	24386724	4	gain	AABB	0.243823	germline	1	4.52294211598506e-16	0
19	24386724	24404840	4	gain	AABB	1.22958	germline	1	0.000107577981718229	9.08530961203358e-05
19	24415192	24417780	3	gain	AAB	10.9135	germline	1	0.0857755672031645	0.274372121376562
19	24417780	24420368	4	gain	AAAB	8.36751	germline	1	0.0832797381104798	0.270063313536593
19	27243876	27337044	2	neutral	AA	29.3966	somatic	0	0.0657821885207626	0.147659605283667
19	27337044	27342220	3	gain	AAB	1.66298	germline	1	0.0143154870036632	0.0366539610564058
19	27344808	27347396	4	gain	AABB	34.6107	germline	1	0.0832714927576421	0.270048993470196
19	27347396	27349984	6	gain	AAAABB	1.2416	germline	1	0.0832689558590464	0.270044587407432
19	27349984	27355160	6	gain	AAAABB	0.782655	germline	1	0.0143072792694521	0.0366331621626269
19	27355160	27378452	6	gain	AAAABB	0.234527	germline	1	4.59456445958027e-06	1.66356029762671e-06
19	27378452	27383628	4	gain	AAAB	2.27884	germline	1	0.0143102816173685	0.0366409982142216
19	27383628	27388804	6	gain	AAAABB	0.610026	germline	1	0.0143072792694521	0.0366331621626269
19	27388804	27391392	4	gain	AAAB	3.56276	germline	1	0.0832714927576421	0.270048993470196
19	27391392	27399156	6	gain	AAAABB	0.382987	germline	1	0.00270020623565423	0.00495802429045222
19	27469032	27474208	1	loss	A	-1	somatic	0	0.0215118793848409	0.0562106444104653
19	34391932	34394520	5	gain	AAABB	4.10438	germline	1	0.0832714927576421	0.270048993470196
19	48390424	48393012	3	gain	-	-1	somatic	0	0.0846791954467726	0.272485826823307
19	48610404	48623344	2	neutral	AA	27.2839	somatic	0	0.969936407468611	0.876968638213002
19	48641460	48667340	2	neutral	AA	100	somatic	0	0.126103274794185	0.320057403741631
19	48667340	48669928	4	gain	AAAA	8.06649	somatic	0	0.0832803723957831	0.27006441510312
19	49565376	49593844	2	neutral	AA	32.8148	somatic	0	0.209930985995308	0.181233233394564
19	55432372	55450488	2	neutral	AA	16.6822	somatic	0	0.443499688843199	0.692692484919558
19	58279172	58328344	2	neutral	AA	38.1114	somatic	0	0.173638020388102	0.444781729018347
20	64700	67288	12	gain	-	-1	germline	1	0.0832670532261865	0.270041282894797
20	21304416	21309592	1	loss	A	-1	germline	1	0.02035636063688	0.0552267154990793
20	26319960	26322548	0	loss	-	-1	germline	1	0.0832727612304184	0.270051196521257
20	28773384	28788912	8	gain	-	-1	germline	1	0.000532098856586138	0.000671013571982404
20	28794088	28804440	3	gain	-	-1	germline	1	0.000947199757444027	0.00163487040677168
20	28804440	28954544	8	gain	-	-1	germline	1	9.22094795240895e-09	5.58234458658546e-10
20	28954544	28957132	4	gain	-	-1	germline	1	0.0832746639689313	0.270054501122445
20	28957132	29205580	8	gain	-	-1	germline	1	NA	NA
20	29205580	29262516	3	gain	-	-1	germline	1	0.0267045532076843	0.0100783797616814
20	29262516	29265104	16	gain	-	-1	germline	1	0.0832664190230592	0.270040181397145
20	29265104	29301336	3	gain	-	-1	somatic	0	7.12307950577482e-08	1.16893297597009e-07
20	29301336	29314276	4	gain	-	-1	germline	1	0.000107592754701071	9.08979499401052e-05
20	29314276	29407444	3	gain	-	-1	germline	1	0.0167315426477964	0.0433196101086757
20	29407444	29410032	6	gain	-	-1	germline	1	0.0832689558590464	0.270044587407432
20	29410032	29686948	3	gain	-	-1	germline	1	NA	NA
20	29694712	29860344	3	gain	-	-1	germline	1	5.02183084444109e-09	2.29444609756158e-07
20	29875872	29878460	10	gain	-	-1	germline	1	0.0832676874332268	0.270042384395729
20	29886224	29891400	4	gain	-	-1	germline	1	0.0143117829997297	0.0366419024683852
20	29891400	29893988	7	gain	-	-1	germline	1	0.0832689558590464	0.270044587407432
20	30145024	30147612	1	loss	A	-1	somatic	0	0.0906142472831476	0.282577396463128
20	30502168	30504756	4	gain	-	-1	somatic	0	0.0832714927576421	0.270048993470196
20	30980948	31001652	3	gain	-	-1	somatic	0	0.00056881114763458	0.000757442742344128
20	31053412	31074116	51	gain	-	-1	germline	1	0.00269985984759331	0.00495759604107204
20	31162108	31164696	3	gain	-	-1	germline	1	0.0833311279005608	0.270152551052071
20	31164696	31167284	8	gain	-	-1	germline	1	0.0832689558590464	0.270044587407432
20	31167284	31182812	3	gain	-	-1	germline	1	2.21458365652721e-05	1.23343010963728e-05
20	31182812	31190576	16	gain	-	-1	germline	1	0.00270000569024868	0.00495796310989316
20	31190576	31239748	3	gain	-	-1	somatic	0	2.21487075089467e-05	1.23452627194265e-05
20	31239748	31242336	66	gain	-	-1	germline	1	0.0832651506285434	0.27003797841168
20	31242336	31244924	4	gain	-	-1	germline	1	0.0832733954726762	0.270052298051706
20	42417320	42427672	2	neutral	AA	100	somatic	0	0.277770403899626	0.542837368911745
20	43392996	43421464	2	neutral	AA	100	somatic	0	0.012882335247013	0.038205454143185
20	43641444	43646620	1	loss	A	-1	germline	1	0.0204423520273415	0.0556069781110579
20	46788452	46791040	4	gain	AAAB	38.9987	somatic	0	0.0832727612304184	0.270051196521256
20	62124940	62153408	2	neutral	AA	100	somatic	0	0.731343354154441	0.477322242556861
20	63636332	63693268	2	neutral	AA	24.014	germline	1	0.816595447310977	0.911734444750841
20	63693268	63695856	4	gain	AAAA	3.95725	somatic	0	0.0832797381104798	0.270063313536593
21	0	10691028	8	gain	AAAAAABB	-1	somatic	0	4.71547342100617e-18	0
21	10691028	10693616	61	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBBBB	100	germline	1	0.0832651506285434	0.27003797841168
21	10693616	10755728	8	gain	AAAAAABB	0.387119	germline	1	2.00703763357486e-13	4.44089209850063e-16
21	10763492	10766080	5	gain	AAAAB	10.871	germline	1	0.0832702243005181	0.270046790432254
21	15214852	15217440	1	loss	A	-1	germline	1	0.0836180492179426	0.27065091355134
21	17393948	17399124	2	neutral	AA	18.1893	somatic	0	0.179818628750453	0.3336025722342
21	17999540	18110824	2	neutral	AA	100	somatic	0	0.803709541162084	0.310073480475434
21	18361860	18367036	2	neutral	AA	100	somatic	0	0.244670935653085	0.370529178728292
21	18910516	18946748	2	neutral	AA	54.5678	somatic	0	0.44570990434816	0.809524429753349
21	21351000	21467460	2	neutral	AA	70.3546	somatic	0	0.482767297217639	0.494064496143759
21	24192624	24202976	2	neutral	AA	24.6877	somatic	0	0.371837237115766	0.235138735340204
21	25962816	25970580	2	neutral	AA	100	somatic	0	0.654449142495323	0.875618563668623
21	29697300	29707652	2	neutral	AA	37.2384	somatic	0	0.889603360004026	0.567678604561651
21	31444200	31472668	2	neutral	AA	27.2888	somatic	0	0.0812167057154819	0.179298262374068
21	32357764	32362940	2	neutral	AA	54.5728	germline	1	0.248718414698169	0.687176099967144
21	36480448	36524444	2	neutral	AA	23.8193	somatic	0	0.518358269531964	0.94397288414045
21	38051364	38061716	2	neutral	AA	27.3357	somatic	0	0.540493618017275	0.731391541352528
21	38913168	38918344	2	neutral	AA	61.8887	somatic	0	0.903741807099928	0.796743772057065
21	39298780	39306544	2	neutral	AA	54.5678	somatic	0	0.0775363947774036	0.315478898900982
21	39743916	39818968	2	neutral	AA	39.4261	somatic	0	0.402534317819847	0.64578242876954
21	41542576	41555516	2	neutral	AA	35.1584	somatic	0	0.961936535065417	0.678374441721448
21	41803964	41806552	5	gain	AAAAA	5.42466	germline	1	0.0832702243005181	0.270046790432254
21	42171460	42176636	2	neutral	AA	54.5678	somatic	0	0.335803643500975	0.638797132526824
21	43333472	43336060	2	neutral	AA	100	somatic	0	0.161452431132333	0.386991253638583
21	43336060	43338648	4	gain	AAAA	5.02927	germline	1	0.0832746639689313	0.270054501122445
21	46045696	46048284	3	gain	AAA	9.87072	somatic	0	0.0833127261356617	0.270120599345094
22	11627884	11630472	4	gain	-	-1	germline	1	0.0832740297188472	0.270053399585435
22	12691552	12694140	16	gain	AAAAAAAAAAAAAAAA	100	germline	1	0.0832664190230592	0.270040181397145
22	17875316	17877904	4	gain	AAAA	3.756	germline	1	0.0832797381104798	0.270063313536593
22	20160520	20163108	3	gain	AAB	14.9693	somatic	0	0.0833127261356617	0.270120599345094
22	23550800	23553388	3	gain	AAB	36.2866	somatic	0	0.0833108226926954	0.270117294153533
22	29078768	29117588	2	neutral	AA	100	somatic	0	0.405541987362766	0.464643023438555
22	29117588	29122764	3	gain	AAB	16.3015	germline	1	0.0143138851684732	0.0366467254870181
22	30452996	30455584	1	loss	A	-1	somatic	0	0.116165434438717	0.323183350871369
22	34197832	34332408	2	neutral	AA	79.936	somatic	0	0.20010517801294	0.271195240668176
22	34466984	34469572	1	loss	A	-1	germline	1	0.0843989464149323	0.272001612679063
22	35297732	35465952	2	neutral	AA	18.4667	somatic	0	0.00158985152090721	0.0046485682431624
22	36747012	36752188	1	loss	A	-1	germline	1	0.0218385069736128	0.0482970215599078
22	38861408	38869172	2	neutral	AA	54.568	germline	1	0.674579312941188	0.960631400587229
22	41721148	41726324	2	neutral	AA	36.3786	somatic	0	0.911091864884455	0.938442301766825
22	41935952	41941128	3	gain	AAA	100	somatic	0	0.014621495657449	0.0375461318525488
22	43333472	43354176	2	neutral	AA	10.4338	somatic	0	0.0952654699197258	0.0629639983457584
X	3522268	3524856	3	gain	AAA	17.7941	germline	1	0.0840890786045275	0.271466052369234
X	38724244	38729420	0	loss	-	-1	germline	1	0.0143063786734367	0.036632258097186
X	58488800	58499152	2	gain	AA	54.5681	germline	1	0.118710351354882	0.177495040704358
X	130497312	130510252	2	gain	AA	75.2151	somatic	0	0.000635370565216185	0.000306294777172367
X	140722500	140725088	2	gain	AA	13.1179	somatic	0	0.579582556289231	0.776533413828423
Y	10654796	10657384	13	gain	-	-1	germline	1	0.0832664190230592	0.270040181397145
Y	10659972	10662560	4	gain	-	-1	germline	1	0.0832759324808391	0.270056704206303
Y	10685852	10688440	6	gain	-	-1	germline	1	0.0832689558590464	0.270044587407432
Y	10747964	10753140	3	gain	-	-1	germline	1	0.0143207942122141	0.0366672295133001
Y	10753140	10755728	8	gain	-	-1	germline	1	0.0832683216441801	0.270043485899941
Y	10755728	10758316	3	gain	-	-1	germline	1	0.0832917902004342	0.270084243861465
Y	10758316	10763492	9	gain	-	-1	germline	1	0.0143070791326825	0.0366331621626269
Y	10763492	10768668	4	gain	-	-1	germline	1	0.0143105818827253	0.036639792572375
Y	10768668	10779020	5	gain	-	-1	germline	1	0.000532144659693386	0.000671101899106463
Y	10779020	10784196	2	gain	-	-1	germline	1	0.503681847652353	0.699587063116419
Y	10784196	10789372	5	gain	-	-1	germline	1	0.0143075794792372	0.0366337648837664
Y	10789372	10794548	4	gain	-	-1	germline	1	0.0143101815301513	0.0366394911673368
Y	10794548	10802312	7	gain	-	-1	germline	1	0.00270022446772966	0.00495808547170318
Y	10802312	10807488	4	gain	-	-1	germline	1	0.0143114827121418	0.0366452182340329
Y	10812664	10820428	3	gain	-	-1	germline	1	0.0176325100252183	0.04634047170791
Y	10820428	10828192	4	gain	-	-1	germline	1	0.00270051619623542	0.0049586361341053
Y	10828192	10843720	3	gain	-	-1	germline	1	3.44414263292645e-05	3.51311010607924e-05
Y	10843720	10846308	6	gain	-	-1	germline	1	0.0832689558590464	0.270044587407432
Y	10846308	10887716	3	gain	-	-1	germline	1	4.5207043387289e-08	7.83912978974399e-08
Y	10887716	10890304	5	gain	-	-1	germline	1	0.0832695900778257	0.270045688918203
Y	10892892	10900656	3	gain	-	-1	germline	1	0.0146948968351236	0.0374722954382989
Y	10923948	10929124	6	gain	-	-1	germline	1	0.0143074794086914	0.0366337648837664
Y	10929124	10934300	2	gain	-	-1	germline	1	0.0194749230949552	0.045830330519147
Y	10934300	10939476	7	gain	-	-1	germline	1	0.0143072792694521	0.0366334635221122
Y	10939476	10955004	3	gain	-	-1	germline	1	2.21988625372203e-05	1.24136784266371e-05
Y	10957592	10960180	6	gain	-	-1	germline	1	0.0832689558590464	0.270044587407432
Y	10962768	10975708	4	gain	-	-1	germline	1	0.00270075324685234	0.00495955402935866
Y	10975708	10986060	3	gain	-	-1	germline	1	0.000546373995157182	0.000714721843830479
Y	10986060	10988648	23	gain	-	-1	germline	1	0.0832657848238449	0.270039079902773
Y	10988648	10999000	3	gain	-	-1	germline	1	0.000542526344872329	0.000698487459750097
Y	10999000	11001588	11	gain	-	-1	germline	1	0.0832676874332268	0.270042384395729
Y	11004176	11040408	3	gain	AAB	59.4052	germline	1	8.21199930487653e-08	6.30296496106908e-08
Y	11291444	11306972	38	gain	AAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBB	5.94404	germline	1	2.2092215115899e-05	1.22896378625947e-05
Y	11306972	11325088	9	gain	AAAAAABBB	0.522499	germline	1	0.000532081240984627	0.000671013571982404
Y	11330264	11335440	14	gain	AAAAAAAAABBBBB	15.3144	germline	1	0.014306678866552	0.0366328608053109
Y	11485544	11529540	2	gain	AA	2.64991	somatic	0	0.00101106107223181	0.000241126361638755
Y	11646000	11687408	2	gain	AA	5.68389	somatic	0	4.78021905876336e-05	1.5473762456919e-06
Y	11687408	11692584	8	gain	AAAAABBB	5.32292	germline	1	0.0143070791326825	0.0366331621626269
Y	11692584	11715876	2	gain	AA	29.111	somatic	0	0.0182429134806194	0.0329229600699866
Y	11715876	11718464	5	gain	AAAAA	4.58957	germline	1	0.0832702243005181	0.270046790432254
Y	11718464	11721052	2	gain	AA	21.8325	germline	1	0.190493980691068	0.423947122866228
Y	11721052	11723640	48	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBBBBB	100	germline	1	0.0832651506285434	0.27003797841168
Y	11723640	11728816	2	gain	AA	98.1935	germline	1	0.385926429430515	0.504869318868139
Y	11728816	11731404	5	gain	AAAAA	12.0782	germline	1	0.0832702243005181	0.270046790432254
Y	11731404	11733992	2	gain	AA	24.0269	germline	1	0.165403751314493	0.392149071170127
Y	11733992	11746932	3	gain	AAB	1.88052	germline	1	0.000120590289053997	0.000128082558787046
Y	11746932	11749520	14	gain	AAAAAAAAABBBBB	11.7526	germline	1	0.0832664190230592	0.270040181397145
Y	26635696	26640872	6	gain	AAAABB	7.55609	germline	1	0.0143073793387631	0.0366334635221122
Y	26640872	26656400	3	gain	AAB	3.255	germline	1	0.00271028746542595	0.0049834740429785
Y	56827304	56837656	36	gain	AAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBB	31.9969	germline	1	0.000532028397440563	0.000670958373064412
Y	56837656	56850596	7	gain	AAAAABB	4.26136	germline	1	0.00270016977184085	0.00495796310989316
