chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	5667930	5677515	3	gain	-	-1	somatic	0	0.00272653481883772	0.00503405999422779
1	16610805	16617195	6	gain	-	-1	germline	1	0.0143095996591704	0.0366366560417004
1	16882380	16943085	4	gain	-	-1	germline	1	2.03950306759637e-07	3.05194195471259e-08
1	31429215	31432410	5	gain	-	-1	germline	1	0.0832818122299323	0.270066783896785
1	34636995	34646580	1	loss	A	-1	germline	1	0.00270367385942575	0.00496323244585151
1	55660095	55669680	1	loss	A	-1	germline	1	0.00272180740303321	0.00499910430434469
1	103610655	103617045	1	loss	A	-1	somatic	0	0.0143247418569688	0.0366822576923573
1	109642815	109649205	1	loss	A	-1	somatic	0	0.014402286940745	0.036899732306777
1	112147695	112163670	1	loss	A	-1	somatic	0	0.00275734841723014	0.0050916518591626
1	125068275	125074665	3	gain	-	-1	germline	1	0.0143268529569305	0.0366800138276849
1	125081055	125084250	6	gain	-	-1	germline	1	0.0832770948789421	0.270058591226314
1	125084250	125164125	3	gain	-	-1	germline	1	0.000125821206501923	0.000147718419796994
1	125164125	143749440	1	loss	A	-1	germline	1	3.6585769867255e-33	0
1	145902870	145909260	2	neutral	AA	54.5678	somatic	0	0.516944400875118	0.5251978591488
1	152788095	152797680	1	loss	A	-1	germline	1	0.00270870110877925	0.00497858798423578
1	162603135	162654255	2	neutral	AA	36.74	somatic	0	0.751766940647301	0.798239811077502
1	163686240	163766115	2	neutral	AA	21.924	somatic	0	0.796181513585272	0.529317489871236
1	169258320	169271100	1	loss	A	-1	germline	1	0.000533288488257385	0.000672390859331906
1	174769695	174801645	2	neutral	AA	100	somatic	0	0.598414429556497	0.679652986673377
1	180035055	180137295	2	neutral	AA	27.4402	somatic	0	0.0826924943853897	0.103305580659337
1	187744590	187754175	1	loss	A	-1	somatic	0	0.00279478179385881	0.00525341630246956
1	191019465	191124900	2	neutral	AA	30.162	somatic	0	0.419273984145943	0.578153686065179
1	191543445	191706390	2	neutral	AA	36.3791	germline	1	0.105186894608944	0.211371509453127
1	191712780	192124935	2	neutral	AA	28.4393	germline	1	0.121148259053433	0.178731363006297
1	194987655	195003630	2	neutral	AA	67.9641	germline	1	0.0118535463807663	0.0832675593173458
1	197451000	197569215	2	neutral	AA	76.3451	somatic	0	0.623010018385524	0.761884158099451
1	200297745	200441520	2	neutral	AA	48.3324	somatic	0	0.0280657771813563	0.0876572511335322
1	200639610	200677950	2	neutral	AA	36.3845	somatic	0	0.708737002633858	0.963708142902888
1	205665345	205802730	2	neutral	AA	37.9254	somatic	0	0.445155114614946	0.913487147192746
1	209905110	209911500	1	loss	A	-1	somatic	0	0.014329585376028	0.0366949751940695
1	212879655	212886045	2	neutral	AA	54.5678	somatic	0	0.913893495059496	0.962830434221661
1	215745570	215761545	2	neutral	AA	54.8491	somatic	0	0.541678807288719	0.358700860630964
1	221496570	221598810	2	neutral	AA	100	somatic	0	0.49638321938915	0.215436902880037
1	228065490	228071880	1	loss	A	-1	somatic	0	0.0150977595352685	0.0390245972474108
1	231784470	231800445	2	neutral	AA	92.4567	somatic	0	0.890175359030866	0.643758379747441
1	234774990	234781380	4	gain	AAAB	9.80025	germline	1	0.0143127014178263	0.0366430073944007
1	236094525	236097720	4	gain	AAAB	15.3593	germline	1	0.0832857435211099	0.27007361126076
1	240184125	240228855	2	neutral	AA	48.776	somatic	0	0.338349372307095	0.64844386709954
1	244899945	245078865	2	neutral	AA	40.3863	somatic	0	0.0339867793053093	0.113507516330856
1	248586975	248631705	1	loss	A	-1	germline	1	9.26318718303598e-11	1.41320288804536e-12
2	3179025	3182220	5	gain	AAABB	12.1887	germline	1	0.0832833847283647	0.270069514827257
2	15387120	15403095	2	neutral	AA	41.8476	somatic	0	0.342040175596773	0.430878009899766
2	24234075	24262830	2	neutral	AA	100	somatic	0	0.570646510252787	0.554797303305265
2	26304435	26451405	2	neutral	AA	54.1603	somatic	0	0.0346722975489695	0.0375583879644644
2	35004420	35023590	2	neutral	AA	100	somatic	0	0.425392425349769	0.604423737279439
2	35752050	35768025	1	loss	A	-1	germline	1	0.000107895248423742	9.12604489333724e-05
2	38726595	38745765	3	gain	AAB	4.36893	germline	1	2.2298386876637e-05	1.25927178555862e-05
2	66015090	66037455	2	neutral	AA	100	somatic	0	0.46842323767146	0.316671629322509
2	89773110	89782695	4	gain	-	-1	germline	1	0.00270154777470164	0.00495958999454471
2	89782695	89795475	3	gain	AAA	72.2038	germline	1	0.00284219641247506	0.00543726244837006
2	89795475	89814645	4	gain	AAAA	2.68182	germline	1	0.000107657668657356	9.08913369664921e-05
2	89814645	89817840	2	neutral	AA	20.8433	somatic	0	0.108683472946088	0.31173105972442
2	89817840	89824230	4	gain	AAAB	100	germline	1	0.0143141904726332	0.0366456229372738
2	89824230	89827425	8	gain	AAAAAABB	100	germline	1	0.0832739500985353	0.270053129546788
2	89827425	89843400	30	gain	AAAAAAAAAAAAAAAAAAAABBBBBBBBBB	26.1919	germline	1	0.000107518146520969	9.08056466342178e-05
2	89843400	89846595	3	gain	AAB	100	germline	1	0.0833305708664088	0.270151452114849
2	89846595	89849790	3	gain	AAA	100	germline	1	0.083303042988198	0.270103653158966
2	90063855	90210825	1	loss	A	-1	germline	1	9.30047644095616e-09	5.68838975922858e-10
2	91412145	91415340	4	gain	-	-1	germline	1	0.0832857435211099	0.27007361126076
2	106262505	106272090	1	loss	A	-1	germline	1	0.0145995393034398	0.0375165788225835
2	107198640	107291295	2	neutral	AA	33.3804	somatic	0	0.0371736204838789	0.044147593843005
2	109198710	109201905	14	gain	AAAAAAAAAAAAAA	20.0787	germline	1	0.0832653024484434	0.270038110343837
2	110872890	110901645	2	neutral	AA	83.4232	somatic	0	0.458586632207502	0.479091126017674
2	117039240	117045630	1	loss	A	-1	germline	1	0.0143498444414024	0.0367627421363683
2	125684910	125694495	0	loss	-	-1	germline	1	0.0143062504258478	0.0366317997748649
2	132237855	132247440	3	gain	AAB	0.884539	germline	1	0.00271074161495363	0.00498719694518979
2	132269805	132410385	2	neutral	AA	1.50295	somatic	0	0.732145003300615	0.983203608120324
2	163810845	164571255	2	neutral	AA	100	somatic	0	0.136564849010576	0.0681209776008906
2	176399145	176408730	1	loss	A	-1	germline	1	0.0143205204802292	0.0366613196250195
2	177632415	177705900	2	neutral	AA	57.8778	somatic	0	0.227729081582	0.396695783954946
2	180015885	180233145	2	neutral	AA	25.3305	somatic	0	0.559750069161427	0.936914907855488
2	183220470	183226860	1	loss	A	-1	somatic	0	0.0143361699097531	0.03670170955063
2	186402690	186536880	2	neutral	AA	53.5819	somatic	0	0.695762284168704	0.385852095919597
2	193824675	193831065	1	loss	A	-1	germline	1	0.0143226310314116	0.0366583293262898
2	199856835	200022975	2	neutral	AA	100	somatic	0	0.872563342977226	0.941993016355232
2	203582205	203598180	2	neutral	AA	100	somatic	0	0.166915892552511	0.090159732575373
2	219186585	219192975	1	loss	A	-1	germline	1	0.0143098477780402	0.0366422601264397
2	238100985	238152105	2	neutral	AA	9.57792	somatic	0	0.000851039841113916	0.00837865337284671
3	2329155	2345130	2	neutral	AA	100	somatic	0	0.179661710520658	0.298282152740778
3	12725685	12904605	2	neutral	AA	41.9479	somatic	0	0.142152151586516	0.0442099376353577
3	15000525	15032475	2	neutral	AA	37.585	somatic	0	0.531634915790084	0.709122687653056
3	17153955	17163540	2	neutral	AA	100	somatic	0	0.680348276123212	0.951693357859206
3	21147705	21150900	1	loss	A	-1	somatic	0	0.0842502746794173	0.271744626582625
3	32058630	32068215	1	loss	A	-1	germline	1	0.0143431300525151	0.0366893640561196
3	48001680	48027240	2	neutral	AA	36.3792	somatic	0	0.429397210390779	0.446103336928074
3	51065685	51084855	2	neutral	AA	100	germline	1	0.798653292620118	0.514691285139039
3	52992270	53005050	1	loss	A	-1	germline	1	0.000534067991943896	0.000673323830196026
3	57593070	57640995	2	neutral	AA	54.568	somatic	0	0.204134164314933	0.644291373941574
3	57711285	57765600	2	neutral	AA	54.5679	somatic	0	0.574819369799134	0.471638432015562
3	68689305	68698890	0	loss	-	-1	germline	1	0.0143064984934887	0.0366325468561794
3	75708720	75865275	2	neutral	AA	0.49007	germline	1	0.000945020596472705	0.00159274849575453
3	77779080	77788665	3	gain	AAB	0.874679	germline	1	0.00310686014757278	0.00637714124017164
3	80012385	80015580	0	loss	-	-1	germline	1	0.0832653024484434	0.270038110343844
3	89351370	89367345	1	loss	A	-1	germline	1	0.0005340022624897	0.00067285719316923
3	90392940	90507960	2	neutral	AA	1.81156	somatic	0	1.14702787927373e-11	7.74005304293723e-11
3	90507960	90543105	3	gain	-	-1	somatic	0	4.28198186504588e-07	4.26201819281324e-07
3	90667710	90715635	1	loss	A	-1	germline	1	8.06098117179048e-09	3.33366667604196e-11
3	94613535	94642290	2	neutral	AA	23.7353	somatic	0	0.227638006509329	0.234743977599647
3	95115150	95188635	2	neutral	AA	100	somatic	0	0.35208998958212	0.761069900722632
3	98687160	98696745	1	loss	A	-1	germline	1	0.00270281419433105	0.00496725716764623
3	98763840	98977905	2	neutral	AA	64.0698	somatic	0	0.329404020521668	0.443200007085551
3	108399960	108419130	2	neutral	AA	100	somatic	0	0.437171527544403	0.579896656418188
3	118253340	118307655	2	neutral	AA	40.3182	somatic	0	0.645973760810253	0.58849688166728
3	131988645	131995035	1	loss	A	-1	somatic	0	0.0143457408743857	0.0366934788172112
3	136301895	136308285	0	loss	-	-1	germline	1	0.0143062504258478	0.0366317997748649
3	142420320	142439490	2	neutral	AA	54.5678	somatic	0	0.672532826416775	0.798861500944014
3	155769030	155794590	2	neutral	AA	54.5678	germline	1	0.819686563270062	0.889473908350184
3	162034425	162053595	2	neutral	AA	100	somatic	0	0.393468829945239	0.744832173737257
3	162807615	162826785	1	loss	A	-1	germline	1	2.21498573080899e-05	1.23426723255271e-05
3	183853080	184086315	2	neutral	AA	100	somatic	0	0.824940544279863	0.617979314154638
3	184833945	184945770	2	neutral	AA	36.3786	somatic	0	0.167788378078856	0.239616150242239
3	185964975	186048045	2	neutral	AA	54.5678	somatic	0	0.0595409098372085	0.160230588663235
3	189645615	189652005	1	loss	A	-1	germline	1	0.0143206446227041	0.0366635624891177
3	191600955	191607345	2	neutral	AA	100	germline	1	0.186702202946304	0.450544702753266
3	193156920	193166505	1	loss	A	-1	germline	1	0.0027038322460337	0.00496490272207029
3	196882290	197042040	2	neutral	AA	56.5106	somatic	0	0.152631182336405	0.388156952246188
4	127800	134190	1	loss	A	-1	germline	1	0.0144042833346259	0.0368873285603772
4	623025	629415	2	neutral	AA	100	somatic	0	0.162725154595553	0.225547462203729
4	4754160	4763745	2	neutral	AA	54.5681	somatic	0	0.848650319093794	0.95014260412752
4	6894810	6901200	1	loss	A	-1	germline	1	0.0159241772467819	0.0415427072743129
4	7862895	7866090	5	gain	AAABB	3.73359	germline	1	0.0832833847283647	0.270069514827257
4	10968435	10974825	2	neutral	AA	100	somatic	0	0.643011084289738	0.900002338516898
4	11629800	11636190	2	neutral	AA	100	somatic	0	0.578967023398913	0.520650318265491
4	24655815	24713325	2	neutral	AA	100	somatic	0	0.192689433770008	0.26402240788418
4	25109505	25147845	2	neutral	AA	100	germline	1	0.208024172428013	0.203291294451324
4	30783825	30796605	2	neutral	AA	100	somatic	0	0.493588767568487	0.726656461210547
4	33307875	33320655	2	neutral	AA	54.5757	germline	1	0.973146733605493	0.959631205131508
4	40292145	40298535	3	gain	AAB	6.6315	germline	1	0.0143289643313264	0.0366886159611113
4	42758685	42768270	1	loss	A	-1	somatic	0	0.00271271543922547	0.00498780694604739
4	44599005	44608590	2	neutral	AA	100	germline	1	0.535448113306198	0.801978872842866
4	45023940	45027135	0	loss	-	-1	germline	1	0.0832653024484434	0.270038110343844
4	46199700	46206090	1	loss	A	-1	somatic	0	0.0155191778879006	0.0403050516524862
4	48397860	48433005	2	neutral	AA	59.9712	somatic	0	0.114384106727961	0.14574602976456
4	49145490	49151880	78	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBBBBBBBBBBBBBB	100	germline	1	0.0143061263934502	0.0366314262392047
4	49653495	49656690	13	gain	AAAAAAAAABBBB	4.67142	germline	1	0.0832653024484434	0.270038110343837
4	54618525	54692010	2	neutral	AA	45.8572	somatic	0	0.130976012863438	0.114716583184801
4	63200295	63203490	1	loss	A	-1	germline	1	0.0832660885683902	0.270039475700733
4	63829710	63852075	1	loss	A	-1	germline	1	0.000109133001695714	9.44162618977673e-05
4	64727505	64765845	2	neutral	AA	78.6684	somatic	0	0.0883472127423826	0.188067613614815
4	66107745	66120525	2	neutral	AA	54.5728	germline	1	0.685317753584673	0.690942664110883
4	68516775	68622210	1	loss	A	-1	germline	1	4.57339883100938e-16	0
4	70839540	70855515	2	neutral	AA	100	somatic	0	0.684478077834257	0.741172649023478
4	71890695	71935425	2	neutral	AA	54.8585	somatic	0	0.952432206948412	0.802535896053783
4	77993145	78015510	2	neutral	AA	100	somatic	0	0.575489092619848	0.621973286230725
4	83328795	83335185	2	neutral	AA	100	germline	1	0.304994981399506	0.777147775676818
4	86054130	86060520	1	loss	A	-1	germline	1	0.0143274739209105	0.0366949751940695
4	91153350	91159740	1	loss	A	-1	germline	1	0.0143258594639412	0.0366673008627272
4	95623155	95680665	2	neutral	AA	100	somatic	0	0.422514711234302	0.344224599031716
4	97431525	97441110	1	loss	A	-1	germline	1	0.0171403480219792	0.0452695375468574
4	98070525	98108865	2	neutral	AA	100	somatic	0	0.971642653706835	0.960814261825487
4	102211245	102217635	2	neutral	AA	100	somatic	0	0.210095850224389	0.209207846108642
4	106227360	106789680	2	neutral	AA	15.5909	germline	1	0.293344099584027	0.296968593802384
4	111316995	111323385	1	loss	A	-1	somatic	0	0.0152063133057427	0.0393486920028109
4	114253200	114265980	1	loss	A	-1	somatic	0	0.00313906848512301	0.00647211045383789
4	115384230	115457715	2	neutral	AA	100	germline	1	0.133338834854919	0.222901313313574
4	116211735	116230905	2	neutral	AA	100	somatic	0	0.121318802461176	0.272498961441731
4	117151065	117160650	2	neutral	AA	100	somatic	0	0.856993601605962	0.95619710051108
4	117914670	117972180	2	neutral	AA	54.5678	somatic	0	0.824425123370579	0.261959846292068
4	119739015	119876400	2	neutral	AA	100	somatic	0	0.255032326241417	0.308055335145398
4	133697970	133707555	2	neutral	AA	100	somatic	0	0.173928074907835	0.211421561428404
4	134509500	134515890	1	loss	A	-1	somatic	0	0.0148913046023855	0.0383911747342043
4	140762115	140832405	2	neutral	AA	32.937	somatic	0	0.131923968494795	0.227334042259447
4	146283075	146289465	3	gain	AAB	6.96893	somatic	0	0.0143324424874812	0.0366777700831024
4	147810285	147855015	2	neutral	AA	54.5873	somatic	0	0.454624207948638	0.818975074096486
4	147931695	147957255	2	neutral	AA	27.3104	somatic	0	0.550401849765533	0.662556299375309
4	151078770	151193790	2	neutral	AA	26.6654	somatic	0	0.00606608606390226	0.0525501503090497
4	153126765	153161910	2	neutral	AA	21.9834	somatic	0	0.384162802895999	0.724302218517785
4	160957710	160964100	1	loss	A	-1	germline	1	0.0143118328656254	0.0366403920148648
4	162472140	162475335	0	loss	-	-1	germline	1	0.0832660885683902	0.270039475700733
4	164753370	164762955	2	neutral	AA	100	germline	1	0.0178422160804848	0.0252053903110718
4	166663980	166667175	1	loss	A	-1	germline	1	0.0832660885683902	0.270039475700733
4	168750315	168763095	2	neutral	AA	25.0728	somatic	0	0.033359815459001	0.0508915653651003
4	172293570	172501245	2	neutral	AA	80.941	somatic	0	0.487125601661803	0.864076927745332
4	180718785	180785880	2	neutral	AA	36.5645	somatic	0	0.0037608377810148	0.00944138573057807
4	183418560	183437730	2	neutral	AA	46.0647	somatic	0	0.694255118357498	0.977166899505279
4	185517675	185524065	1	loss	A	-1	somatic	0	0.0144255100972826	0.0369904279060221
5	412155	418545	3	gain	-	-1	germline	1	0.0143569348595136	0.0367709864601777
5	3322800	3325995	3	gain	-	-1	germline	1	0.0832951792332675	0.270089997448323
5	12808755	12821535	1	loss	A	-1	germline	1	0.0143647752324948	0.0368077308280251
5	26796465	26802855	1	loss	A	-1	somatic	0	0.0143660200833813	0.0367886047526355
5	42627690	42630885	0	loss	-	-1	germline	1	0.0832660885683902	0.270039475700733
5	45004770	45014355	1	loss	A	-1	germline	1	0.0027038322460337	0.00496581399898011
5	45369000	45375390	1	loss	A	-1	germline	1	0.0145155921943291	0.0372625480652867
5	46269990	46276380	1	loss	A	-1	germline	1	0.014408401667831	0.036874928461276
5	49599180	49602375	226	gain	-	-1	germline	1	0.0832653024484434	0.270038110343837
5	52909200	52912395	1	loss	A	-1	somatic	0	0.0832684469643041	0.270043571801639
5	84651525	84661110	1	loss	A	-1	germline	1	0.0143400224777113	0.0367331508466938
5	86916780	86923170	1	loss	A	-1	germline	1	0.0143554418831615	0.0367473820296075
5	91201275	91207665	1	loss	A	-1	somatic	0	0.0189786999056195	0.0510028656957559
5	118537695	118547280	1	loss	A	-1	germline	1	0.0165419826434689	0.0434373803904139
5	120042540	120052125	1	loss	A	-1	somatic	0	0.00666924703706309	0.0238986676756958
5	140302035	140327595	2	neutral	AA	54.5687	somatic	0	0.103524742500397	0.283664469471694
5	141174270	141177465	4	gain	AAAA	54.9918	germline	1	0.0832951792332675	0.270089997448323
5	141640740	141675885	2	neutral	AA	29.507	somatic	0	0.250672052017116	0.66181995325136
5	142276545	142289325	2	neutral	AA	100	germline	1	0.666508875719607	0.54037350417771
5	147743190	147765555	2	neutral	AA	54.5687	somatic	0	0.493690723363734	0.701708800953253
5	148548330	148551525	2	neutral	AA	100	somatic	0	0.53002104121941	0.742165335965145
5	151235325	151238520	2	neutral	AA	100	germline	1	0.564919253940197	0.766633895463308
5	153264150	153286515	2	neutral	AA	36.9057	somatic	0	0.546580959447417	0.677288923802641
5	154740240	154743435	2	neutral	AA	100	somatic	0	0.174150701611665	0.403456618167193
5	157689225	157692420	2	neutral	AA	100	somatic	0	0.795753620170257	0.895880858143666
5	158797890	158935275	2	neutral	AA	19.1373	somatic	0	0.00844006934729092	0.0247869819034264
5	160114230	160117425	2	neutral	AA	100	somatic	0	0.987292698340789	0.96093130336951
5	160146180	160181325	2	neutral	AA	100	somatic	0	0.360174566615713	0.802385697534753
5	163382715	163417860	2	neutral	AA	36.5863	somatic	0	0.550284358797942	0.87504083068111
5	166309335	166424355	2	neutral	AA	37.789	somatic	0	0.341674878623321	0.816981114738693
5	168424425	168430815	2	neutral	AA	54.5678	somatic	0	0.796506264125356	0.924890606434278
5	168862140	168865335	2	neutral	AA	100	somatic	0	0.636447112030968	0.812735739371173
5	171021960	171028350	2	neutral	AA	100	somatic	0	0.100048742794567	0.281483746116291
5	176319270	176565285	2	neutral	AA	18.199	somatic	0	0.411265481698839	0.424959606948308
5	176856030	176881590	2	neutral	AA	58.2007	somatic	0	0.680053043794806	0.438258323399
5	180910485	180916875	2	neutral	AA	100	somatic	0	0.0520640795436933	0.0907363003945537
5	181044675	181047870	4	gain	AAAA	20.3855	somatic	0	0.0832936065544425	0.270087266366669
6	297135	383400	3	gain	AAB	0.561773	germline	1	1.04303216675998e-18	0
6	3220560	3271680	2	neutral	AA	16.4089	somatic	0	0.100633273179684	0.193163371713529
6	17821710	19115685	2	neutral	AA	92.8567	somatic	0	0.49852531472305	0.427609222402584
6	32486760	32566635	0	loss	-	-1	somatic	0	4.32284918496212e-08	4.12840683861049e-09
6	32582610	32592195	1	loss	A	-1	germline	1	0.00270075653780139	0.00496034863643557
6	34244010	34275960	2	neutral	AA	12.1278	somatic	0	0.499209843567753	0.476847986668337
6	35787195	35799975	3	gain	AAB	3.38231	germline	1	0.000534620417060449	0.000674863134092707
6	54062595	54072180	1	loss	A	-1	germline	1	0.0150338883171522	0.0388303961858082
6	60232140	60238530	3	gain	-	-1	germline	1	0.0143155555595856	0.0366456229372738
6	60238530	60241725	5	gain	-	-1	germline	1	0.0832825984761421	0.270068149359501
6	64430370	64519830	2	neutral	AA	92.2042	somatic	0	0.797020933790004	0.865235105095635
6	73881180	73893960	1	loss	A	-1	germline	1	0.000536509688942389	0.000679417784825498
6	76731120	76743900	1	loss	A	-1	germline	1	0.00270485064811429	0.00496680138864447
6	78811065	78817455	1	loss	A	-1	germline	1	0.0143387796140872	0.036702083713252
6	86619645	86645205	2	neutral	AA	54.5678	somatic	0	0.233294525969727	0.356552200758504
6	91865835	92025585	2	neutral	AA	32.3635	somatic	0	0.0903415912703863	0.498378292674615
6	101086605	101150505	2	neutral	AA	35.0743	somatic	0	0.596012112309641	0.840774433954159
6	106642710	106783290	2	neutral	AA	100	somatic	0	0.659060531940113	0.707584171221014
6	111125295	111182805	2	neutral	AA	100	somatic	0	0.852460582559535	0.490639042718643
6	118681470	118703835	2	neutral	AA	100	germline	1	0.448258355434512	0.469398396367855
6	121179960	121195935	2	neutral	AA	100	somatic	0	0.843307407009733	0.992003127266146
6	121195935	121199130	1	loss	A	-1	somatic	0	0.0843082263742281	0.271844769844436
6	127346310	127375065	2	neutral	AA	54.568	somatic	0	0.0598954717963236	0.145942327566352
6	130071645	130132350	2	neutral	AA	100	somatic	0	0.64702258188791	0.462002870808434
6	134263485	134273070	1	loss	A	-1	somatic	0	0.00282864403372214	0.00534441253956686
6	136375380	136416915	2	neutral	AA	62.2284	germline	1	0.74977153355729	0.796785690781442
6	137103840	137119815	2	neutral	AA	31.1936	germline	1	0.566151190284975	0.718322764187415
6	157312215	157315410	7	gain	AAAABBB	1.766	germline	1	0.0832755224767135	0.270055860376472
6	164989800	165005775	2	neutral	AA	100	somatic	0	0.825040436145337	0.808521362936654
6	170143335	170146530	4	gain	AAAB	45.1287	germline	1	0.0832857435211099	0.27007361126076
7	904185	907380	5	gain	-	-1	germline	1	0.0832818122299323	0.270066783896785
7	9760725	9767115	1	loss	A	-1	germline	1	0.0143292127463579	0.0366998387875775
7	38272905	38343195	1	loss	A	-1	somatic	0	4.9860118567847e-16	0
7	57487635	57497220	3	gain	-	-1	germline	1	0.00270358335659905	0.00496429528929343
7	61046865	61056450	4	gain	-	-1	germline	1	0.0027022035314463	0.00496057624974444
7	62296110	62356815	3	gain	AAB	0.344578	germline	1	2.57647531470595e-09	2.9814474222789e-09
7	62401545	62404740	5	gain	-	-1	germline	1	0.0832833847283647	0.270069514827257
7	62436690	62455860	3	gain	AAB	2.35023	germline	1	2.36164650578817e-05	1.40763545215528e-05
7	62519760	62542125	2	neutral	AA	2.87746	germline	1	0.116793185743019	0.269003903193877
7	62542125	62545320	1	loss	A	-1	germline	1	0.0832660885683902	0.270039475700733
7	62545320	62574075	2	neutral	AA	3.19986	somatic	0	0.00290012620711453	0.0246605672919462
7	65797830	65823390	3	gain	AAB	0.219796	germline	1	9.68263211220668e-07	2.26719465312719e-07
7	66622140	66650895	2	neutral	AA	100	somatic	0	0.216349263761601	0.153618705850802
7	70494480	70516845	2	neutral	AA	31.351	somatic	0	0.24954291450136	0.619999112097645
7	70759665	70916220	2	neutral	AA	59.0256	somatic	0	0.03389863014152	0.0861334392591728
7	71625510	71670240	2	neutral	AA	27.6613	somatic	0	0.0690503735125407	0.134151708698356
7	79680105	79708860	2	neutral	AA	100	germline	1	0.967969656520423	0.93179334384627
7	85856040	85872015	2	neutral	AA	37.2432	somatic	0	0.324048671487666	0.337344666457653
7	93428190	93437775	2	neutral	AA	54.5678	somatic	0	0.934367856919773	0.948402093598413
7	98652015	98821350	2	neutral	AA	10.8827	somatic	0	0.0554529640202512	0.0591794672692597
7	100949220	100955610	3	gain	AAB	13.9734	germline	1	0.0143159278759569	0.0366467439342221
7	100955610	100958805	13	gain	AAAAAAAAAAAAB	6.26787	germline	1	0.0832653024484434	0.270038110343837
7	100958805	100971585	4	gain	AABB	0.30376	germline	1	0.000532732973689338	0.000671842619207608
7	101636145	101680875	2	neutral	AA	100	somatic	0	0.540510609431599	0.43287634981832
7	103936545	103958910	2	neutral	AA	37.8791	somatic	0	0.500852749401125	0.8038810379572
7	110201940	110208330	2	neutral	AA	100	somatic	0	0.99151759081206	0.745274087478739
7	111048615	111090150	2	neutral	AA	54.6208	somatic	0	0.0461636839733219	0.0211311021116403
7	112182840	112224375	2	neutral	AA	41.9142	somatic	0	0.0613361159997206	0.0696056998471001
7	120387600	120598470	2	neutral	AA	100	somatic	0	0.364341747816331	0.30027382585909
7	129154680	129170655	2	neutral	AA	100	somatic	0	0.965640216848345	0.555449809376354
7	132595695	132608475	2	neutral	AA	11.4973	somatic	0	0.155441400767744	0.394019246849643
7	132979095	133001460	2	neutral	AA	100	somatic	0	0.931180087122759	0.516891767089139
7	136982430	137043135	2	neutral	AA	36.3786	germline	1	0.0631909804367431	0.0488656817411784
7	137988855	138055950	2	neutral	AA	74.8815	somatic	0	0.899322720531997	0.730675773436017
7	143413965	143429940	2	neutral	AA	100	somatic	0	0.739721207775036	0.98877061943846
7	144394830	144490680	2	neutral	AA	100	somatic	0	0.143770833334911	0.172617768287921
7	145292625	145308600	2	neutral	AA	36.3876	somatic	0	0.647281987827965	0.495353861736365
7	145784655	145832580	2	neutral	AA	100	somatic	0	0.623627505396595	0.800680003251042
7	152401500	152407890	10	gain	AAAAAAAABB	13.1382	germline	1	0.0143071186791916	0.0366329204018339
7	154599660	154609245	1	loss	A	-1	germline	1	0.00270659406024133	0.00496991664267565
7	158149305	158152500	5	gain	AAABB	21.896	germline	1	0.0832818122299323	0.270066783896785
7	158593410	158596605	4	gain	AABB	12.1386	germline	1	0.0832857435211099	0.27007361126076
8	626220	632610	2	neutral	AA	21.926	somatic	0	0.192667301868732	0.223155975672611
8	4265325	4268520	1	loss	A	-1	germline	1	0.0832684469643041	0.270043571801639
8	19233900	19243485	1	loss	A	45.905	somatic	0	0.00317748821029716	0.00648092222731478
8	21879360	21908115	2	neutral	AA	24.2725	somatic	0	0.767207776061365	0.674401463709631
8	25208550	25214940	1	loss	A	-1	germline	1	0.0143138181961206	0.036654591752969
8	30029805	30116070	2	neutral	AA	100	somatic	0	0.0527099779276999	0.0971734145968567
8	32822235	32835015	1	loss	A	-1	germline	1	0.0143097237181309	0.0366422601264397
8	34611435	34614630	2	neutral	AA	100	somatic	0	0.930008407362986	0.945422848485958
8	40026960	40033350	1	loss	A	-1	germline	1	0.014350217544285	0.0367342741858077
8	40618035	40659570	2	neutral	AA	100	somatic	0	0.238185637698247	0.284390655295386
8	40800150	40822515	2	neutral	AA	6.77198	somatic	0	0.997421138120991	0.605196025369403
8	40915170	40921560	1	loss	A	-1	somatic	0	0.0148252595840286	0.0381671939649522
8	42333750	42336945	0	loss	-	-1	germline	1	0.0832653024484434	0.270038110343844
8	47276415	47337120	2	neutral	AA	100	somatic	0	0.460583617291332	0.787299544055568
8	49353165	49359555	2	neutral	AA	100	somatic	0	0.202830199039404	0.371953447422857
8	49921875	49941045	2	neutral	AA	100	somatic	0	0.178993302310387	0.224744853274494
8	50116770	50126355	1	loss	A	-1	somatic	0	0.00272276367261902	0.00501854769236643
8	62714655	62733825	2	neutral	AA	27.2946	somatic	0	0.119774322952321	0.570795456819631
8	64590120	64631655	2	neutral	AA	100	germline	1	0.359006244905306	0.428740084305913
8	69673365	69708510	2	neutral	AA	54.5679	somatic	0	0.467822544909815	0.800163716560385
8	69746850	69750045	2	neutral	AA	100	somatic	0	0.10666665917979	0.308573616204149
8	73970640	73989810	2	neutral	AA	100	germline	1	0.640698236396977	0.835625576590469
8	74449890	74456280	1	loss	A	-1	somatic	0	0.014498013081026	0.0371886765573582
8	86175540	86181930	1	loss	A	-1	somatic	0	0.014336915496808	0.036702083713252
8	86881635	86884830	2	neutral	AA	100	somatic	0	0.356253820105619	0.599825326431036
8	89265105	89306640	2	neutral	AA	100	somatic	0	0.188608733720025	0.214941644386623
8	90456840	91162935	2	neutral	AA	100	somatic	0	0.141591483673626	0.21683301428998
8	93511260	93514455	2	neutral	AA	100	somatic	0	0.379526699291296	0.62099705272781
8	100700010	100712790	2	neutral	AA	83.6767	germline	1	0.552823349379684	0.856949578691489
8	104546790	104549985	1	loss	A	-1	somatic	0	0.0833148397481635	0.270124137669845
8	104690565	104700150	2	neutral	AA	100	somatic	0	0.473179844354086	0.367921953313904
8	107741790	107767350	2	neutral	AA	39.8664	germline	1	0.841401804152289	0.869309273496852
8	111856950	111904875	2	neutral	AA	100	germline	1	0.944072161193686	0.750339829783707
8	113026320	113035905	1	loss	A	-1	somatic	0	0.00278795620068399	0.00523393757850277
8	113809095	113831460	2	neutral	AA	100	somatic	0	0.45113679680626	0.456651528135274
8	121179960	121183155	2	neutral	AA	100	somatic	0	0.557736323317269	0.761717197610538
8	126180135	126183330	1	loss	A	-1	somatic	0	0.0832684469643041	0.270043571801639
8	133493490	133496685	2	neutral	AA	100	somatic	0	0.599051641940904	0.789275613638964
8	134439210	134713980	2	neutral	AA	14.2136	somatic	0	0.64482700318205	0.685437308070936
8	136148535	136151730	0	loss	-	-1	germline	1	0.0832653024484434	0.270038110343844
8	137372220	137378610	2	neutral	AA	54.5777	somatic	0	0.335327596357833	0.523095466319132
8	137656575	137659770	2	neutral	AA	100	somatic	0	0.673355987103947	0.834397123016642
8	138068730	138071925	2	neutral	AA	97.3243	somatic	0	0.916426820987291	0.941224607401982
8	138634245	138714120	2	neutral	AA	17.0113	somatic	0	0.280434688118093	0.45659757282636
8	144123255	144126450	4	gain	AABB	100	germline	1	0.0832857435211099	0.27007361126076
8	144513045	144768645	2	neutral	AA	13.2293	somatic	0	0.0128939868043406	0.0427431799404829
9	15553260	15562845	1	loss	A	-1	germline	1	0.0143361699097531	0.0366960975117491
9	23361840	23377815	1	loss	A	-1	germline	1	0.000107848042531598	9.11604859664683e-05
9	24502455	24518430	1	loss	A	-1	germline	1	0.000107949471823224	9.12930174803428e-05
9	77855760	77884515	2	neutral	AA	25.2191	somatic	0	0.307457583249318	0.240123313603905
9	81351090	81357480	1	loss	A	-1	germline	1	0.0143233759973356	0.0366680485774677
9	86185125	86284170	2	neutral	AA	22.5995	somatic	0	0.0481445062887447	0.0449048987867755
9	90453645	90575055	2	neutral	AA	88.4292	somatic	0	0.194139661998961	0.591378246693368
9	98658405	98674380	2	neutral	AA	54.5678	somatic	0	0.844322664381055	0.859257338532853
9	103013190	103016385	1	loss	A	-1	germline	1	0.0832802397555513	0.270064052986478
9	114000795	114023160	2	neutral	AA	100	somatic	0	0.739608084273039	0.794562273046392
9	126758430	126761625	0	loss	-	-1	germline	1	0.0832660885683902	0.270039475700733
9	128049210	128058795	2	neutral	AA	100	somatic	0	0.997833725679937	0.972929611776407
9	128649870	128653065	1	loss	A	-1	germline	1	0.0832763086748215	0.270057225798881
9	128732940	128736135	2	neutral	AA	100	somatic	0	0.0860263091274493	0.274800723978483
9	129416670	129423060	2	neutral	AA	100	germline	1	0.97252738779186	0.808924075750101
9	129423060	129439035	3	gain	AAB	1.54227	somatic	0	0.000135491727506943	0.000169685101734651
9	129439035	129445425	2	neutral	AA	0.882017	germline	1	0.206974988685329	0.290361998902527
9	129998160	130001355	2	neutral	AA	54.5678	somatic	0	0.864531777559791	0.923609338288036
9	131742630	131745825	4	gain	AAAA	75.1524	germline	1	0.0832857435211099	0.27007361126076
9	136583055	136599030	2	neutral	AA	65.6353	somatic	0	0.445742379660631	0.656792760445228
9	137100645	137103840	3	gain	AAB	4.6148	somatic	0	0.0832951792332675	0.270089997448323
9	137327490	137330685	4	gain	AAAB	13.5286	germline	1	0.0832888886622855	0.270079073242651
10	5846850	5850045	0	loss	-	-1	germline	1	0.0832660885683902	0.270039475700733
10	6821325	6888420	2	neutral	AA	100	somatic	0	0.557305441464959	0.741864702026594
10	12083490	12086685	2	neutral	AA	100	somatic	0	0.670705019423861	0.83284563886756
10	12326310	12345480	2	neutral	AA	54.5873	somatic	0	0.760384674553747	0.993256429699812
10	19502280	19511865	2	neutral	AA	10.9195	somatic	0	0.574251441727683	0.930398901055438
10	26569620	26588790	2	neutral	AA	0.862084	somatic	0	0.104152654886896	0.143833692683143
10	26623935	26659080	2	neutral	AA	0.515184	somatic	0	0.240921238400872	0.395873009918693
10	26930655	26953020	2	neutral	AA	0.716933	somatic	0	0.957575149460427	0.761047595297925
10	28818900	28828485	2	neutral	AA	100	somatic	0	0.192367470722769	0.436835465360404
10	30208725	30231090	2	neutral	AA	54.5679	somatic	0	0.287116367154376	0.715872763421786
10	30796605	30799800	2	neutral	AA	100	somatic	0	0.743652328787815	0.871620632855847
10	31154445	31157640	1	loss	A	-1	somatic	0	0.0833077615298098	0.270111846827255
10	31672035	31675230	2	neutral	AA	100	somatic	0	0.620410430541787	0.802877533257857
10	34125795	34141770	2	neutral	AA	100	somatic	0	0.183441331117881	0.455296390003873
10	38483775	38486970	3	gain	AAA	34.0511	germline	1	0.0833368639873426	0.270162378457291
10	38486970	38490165	4	gain	AAAB	16.628	germline	1	0.0832857435211099	0.27007361126076
10	38490165	38525310	3	gain	AAA	1.5914	germline	1	9.72390647459448e-09	6.98756719152982e-10
10	38525310	38528505	12	gain	AAAAAAAAAAAB	9.43697	germline	1	0.0832653024484434	0.270038110343837
10	38573235	38579625	5	gain	AAAAA	3.47094	germline	1	0.014311708790535	0.0366403920148628
10	38579625	38582820	4	gain	AAAA	1.87368	germline	1	0.0832943928908483	0.270088631904976
10	38582820	38835225	3	gain	AAA	1.95192	germline	1	5.81135408015434e-14	3.33066907387547e-16
10	41838525	41841720	3	gain	AAB	9.98226	somatic	0	0.0838036242552985	0.270971822977203
10	41857695	41915205	37	gain	AAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBB	56.5527	germline	1	2.20924491304382e-05	1.22895525290767e-05
10	42301800	42320970	3	gain	AAB	1.80224	germline	1	2.39070789239463e-05	1.48635630552452e-05
10	45142155	45161325	2	neutral	AA	11.4148	somatic	0	0.358501128856028	0.590413311570979
10	46516005	46560735	4	gain	AABB	0.597444	germline	1	4.25119118539085e-10	1.02435837590065e-11
10	50209425	50241375	2	neutral	AA	62.1046	somatic	0	0.465051537690078	0.68763113462355
10	52254225	52260615	1	loss	A	-1	somatic	0	0.0143479168794817	0.0367110646173973
10	54759105	54765495	2	neutral	AA	100	somatic	0	0.139031510569174	0.265720868376401
10	56752785	56765565	1	loss	A	-1	germline	1	0.000533989117503423	0.000674560510710132
10	60542055	60586785	2	neutral	AA	100	somatic	0	0.0588240610086765	0.0919325909563056
10	63481455	63491040	2	neutral	AA	28.2957	somatic	0	0.419570330896253	0.704775652168152
10	68152545	68254785	2	neutral	AA	28.4336	somatic	0	0.438443160984173	0.612159330408823
10	69069510	69075900	2	neutral	AA	100	somatic	0	0.420630296562635	0.88113613171977
10	69104655	69168555	2	neutral	AA	100	somatic	0	0.00457563606436127	0.0154871614546799
10	71826795	71836380	2	neutral	AA	100	somatic	0	0.849251567697937	0.703422632182972
10	72759735	72762930	2	neutral	AA	100	somatic	0	0.147499705082549	0.368211399028051
10	76213530	76216725	2	neutral	AA	100	somatic	0	0.438216504223168	0.671396277689869
10	76318965	76379670	2	neutral	AA	100	somatic	0	0.164111703461039	0.189036930594262
10	76494690	76497885	1	loss	A	-1	germline	1	0.0832668746943492	0.270040841062662
10	76919625	77223150	2	neutral	AA	100	somatic	0	0.0803944987497659	0.0640908410910067
10	82753695	82763280	2	neutral	AA	100	somatic	0	0.807544382596072	0.773365017419568
10	92076705	92079900	2	neutral	AA	100	somatic	0	0.114335325862957	0.320407102126388
10	93230100	93341925	2	neutral	AA	27.312	somatic	0	0.0186309260473522	0.103456340529607
10	97303725	97319700	2	neutral	AA	100	somatic	0	0.211167987949417	0.202316301089665
10	98198325	98252640	2	neutral	AA	100	somatic	0	0.914949450290573	0.92321690581906
10	99003465	99025830	2	neutral	AA	100	somatic	0	0.996742985680803	0.838148493546203
10	100313415	100316610	2	neutral	AA	36.3786	somatic	0	0.169206051925163	0.39708704145546
10	103029165	103032360	2	neutral	AA	100	somatic	0	0.955594835082727	0.952727427019134
10	106045245	106048440	2	neutral	AA	100	somatic	0	0.24567958319274	0.488206922061956
10	106268895	106272090	1	loss	A	-1	somatic	0	0.083288102367972	0.270077707739626
10	106272090	106275285	1	loss	A	47.0859	somatic	0	0.0842439257693003	0.271733653612902
10	107169885	107211420	2	neutral	AA	100	somatic	0	0.513041556555688	0.353938221358223
10	111419235	111690810	2	neutral	AA	38.0571	somatic	0	0.100010844774901	0.0587846729650415
10	116492895	116556795	2	neutral	AA	54.5691	somatic	0	0.196703890106729	0.306928929242194
10	118246950	118285290	2	neutral	AA	13.2323	somatic	0	0.00750714848735903	0.00712638049763448
10	119096820	119100015	2	neutral	AA	100	somatic	0	0.123821435109978	0.334607715065517
10	124100190	124231185	2	neutral	AA	9.11474	somatic	0	0.132265448227061	0.121235469255649
10	128461365	128464560	9	gain	AAAAAAAAA	39.2165	germline	1	0.0832708054143287	0.270047667947891
10	129221775	129250530	2	neutral	AA	100	somatic	0	0.414851061737963	0.584415591660399
10	131189895	131193090	0	loss	-	-1	germline	1	0.0832660885683902	0.270039475700733
10	132247440	132314535	2	neutral	AA	9.39176	somatic	0	0.149816054328759	0.142686629730609
10	132362460	132365655	3	gain	AAB	17.8755	somatic	0	0.0832951792332675	0.270089997448323
10	133110090	133113285	4	gain	AAAB	5.87841	germline	1	0.0832928202240499	0.2700859008334
11	28985040	28991430	0	loss	-	-1	germline	1	0.0143061263934502	0.0366314262392066
11	54755910	54778275	1	loss	A	-1	germline	1	2.22872859599022e-05	1.24202959063124e-05
11	54928440	54931635	3	gain	AAB	13.2885	germline	1	0.0832951792332675	0.270089997448323
11	54931635	54934830	5	gain	AAAAB	18.6775	germline	1	0.0832818122299323	0.270066783896785
11	54934830	54938025	4	gain	AAAB	20.6475	germline	1	0.0832920338996707	0.270084535305172
11	55116945	55123335	1	loss	A	-1	germline	1	0.0143350515932989	0.0367076965530601
11	56487600	56545110	2	neutral	AA	100	somatic	0	0.886261010393972	0.494707301766378
11	57957300	57960495	2	neutral	AA	100	somatic	0	0.598700366655355	0.789043725885721
11	58832730	59308785	2	neutral	AA	21.3639	germline	1	0.0325431213047464	0.13809728732221
11	62244990	62254575	2	neutral	AA	36.3786	somatic	0	0.366497663900288	0.52915151640055
11	63708300	63737055	2	neutral	AA	21.8311	somatic	0	0.623912102740954	0.630807670980737
11	64379250	64417590	2	neutral	AA	9.02034	somatic	0	0.144419262043908	0.301292855309492
11	70369875	70373070	3	gain	AAB	20.294	germline	1	0.0832975382966051	0.270094094108602
11	74472255	74475450	2	neutral	AA	100	somatic	0	0.277739062786507	0.522616639542179
11	75727890	75737475	2	neutral	AA	36.3787	somatic	0	0.20246169781538	0.335665754792995
11	77727960	77731155	2	neutral	AA	100	somatic	0	0.944406426922212	0.949614295999388
11	78782310	78785505	2	neutral	AA	100	somatic	0	0.928924024564337	0.94506033945098
11	79386165	79427700	2	neutral	AA	100	germline	1	0.721675301939669	0.68813240677106
11	82600335	82606725	2	neutral	AA	100	somatic	0	0.525690689605675	0.769752453487331
11	82843155	82846350	2	neutral	AA	100	somatic	0	0.972866755754827	0.95734671105315
11	82846350	82849545	3	gain	-	-1	somatic	0	0.0839091737892509	0.271155287060285
11	84217005	84229785	2	neutral	AA	54.5678	somatic	0	0.618648279300607	0.825247531281871
11	85552515	85565295	1	loss	A	-1	germline	1	0.000534164408780107	0.000674244267743207
11	85907160	85964670	2	neutral	AA	100	somatic	0	0.639290994244237	0.339623101386421
11	88769880	89178840	2	neutral	AA	54.8585	somatic	0	0.653338724339045	0.46706281723793
11	90699660	90718830	2	neutral	AA	100	germline	1	0.629471668318885	0.77839492308311
11	94300425	94316400	2	neutral	AA	100	somatic	0	0.879366867758433	0.99113521657253
11	101399715	101422080	2	neutral	AA	100	somatic	0	0.488055888258754	0.480040702396621
11	103144185	103355055	2	neutral	AA	30.6756	somatic	0	0.0562459619786279	0.0391248941583415
11	104396625	104403015	0	loss	-	-1	germline	1	0.0143062504258478	0.0366317997748649
11	104441355	104470110	2	neutral	AA	58.4084	somatic	0	0.38187631001371	0.839905227218632
11	104489280	104514840	2	neutral	AA	100	somatic	0	0.933318009384031	0.834440181461925
11	105345540	105735330	2	neutral	AA	100	somatic	0	0.458102674243133	0.904338452860941
11	111556620	111646080	2	neutral	AA	100	somatic	0	0.152680214839543	0.545809157765538
11	117106335	117122310	3	gain	AAB	7.58403	germline	1	0.00271314667897151	0.00497927315411684
11	119087235	119090430	2	neutral	AA	100	somatic	0	0.199185280126311	0.434542546393995
11	123282270	123362145	2	neutral	AA	38.3034	somatic	0	0.0820434007463547	0.166074044996638
11	125892585	125895780	2	neutral	AA	100	somatic	0	0.517910270643924	0.73339770514642
11	132557355	132570135	2	neutral	AA	56.3456	somatic	0	0.793947974923344	0.988284901092313
11	134758710	134765100	2	neutral	AA	46.4792	germline	1	0.0798624360096993	0.172276584935089
12	2137455	2147040	1	loss	A	-1	germline	1	0.00270686585329155	0.0049733378855219
12	2255670	2258865	5	gain	AAABB	12.7689	germline	1	0.0832818122299323	0.270066783896785
12	2571975	2584755	2	neutral	AA	22.1582	somatic	0	0.87692131484479	0.956801674990057
12	2587950	2773260	2	neutral	AA	14.0473	somatic	0	0.033643422659096	0.130817269702023
12	9971595	9981180	2	neutral	AA	100	somatic	0	0.713695977492639	0.983595854256039
12	17483040	17633205	2	neutral	AA	15.8723	somatic	0	0.650550856987523	0.845827384877766
12	30084120	30090510	1	loss	A	-1	germline	1	0.0143344303396302	0.0366822576923573
12	31672035	31703985	2	neutral	AA	100	somatic	0	0.0333061634407942	0.04034288120872
12	31866930	31886100	2	neutral	AA	100	somatic	0	0.623195204362146	0.919411942717382
12	32656095	32665680	2	neutral	AA	100	somatic	0	0.207337552265338	0.714202784377723
12	34675335	37828800	2	neutral	AA	1.68765	somatic	0	1.32640606356872e-24	0
12	39710655	39713850	0	loss	-	-1	germline	1	0.0832660885683902	0.270039475700733
12	48314790	48317985	1	loss	A	-1	germline	1	0.0832660885683902	0.270039475700733
12	67896945	67925700	2	neutral	AA	100	somatic	0	0.539289430944231	0.914513693402932
12	71206965	71213355	1	loss	A	-1	somatic	0	0.0147267396493305	0.0378562311341925
12	71730945	71753310	2	neutral	AA	54.5678	somatic	0	0.309574488854534	0.715729517307239
12	85111605	85306500	2	neutral	AA	100	germline	1	2.77483082177228e-05	0.000110256742808956
12	90089415	90099000	1	loss	A	-1	germline	1	0.00276486752872419	0.00515181024982403
12	92747655	92958525	2	neutral	AA	24.6866	somatic	0	0.0334276666211056	0.0707775455218637
12	130247370	130541310	2	neutral	AA	92.0687	somatic	0	0.463349820947964	0.416164478643447
12	130643550	130646745	5	gain	AAABB	7.17888	somatic	0	0.0832857435211099	0.27007361126076
13	20796255	20975175	2	neutral	AA	45.4406	somatic	0	0.000469661322919386	0.000898656691271205
13	22019940	22023135	0	loss	-	-1	germline	1	0.0832653024484434	0.270038110343844
13	25042410	25096725	2	neutral	AA	14.3508	somatic	0	0.50424970994742	0.457263574284047
13	31681620	31703985	2	neutral	AA	100	somatic	0	0.874833702091883	0.986634264443686
13	35956530	35959725	3	gain	AAB	11.2051	germline	1	0.0832975382966051	0.270094094108602
13	36598725	36637065	2	neutral	AA	100	somatic	0	0.0224408656253774	0.100884903630555
13	37496520	37512495	1	loss	A	-1	germline	1	0.000107935476226945	9.12046428163116e-05
13	38483775	38486970	0	loss	-	-1	germline	1	0.0832660885683902	0.270039475700733
13	48960180	48963375	0	loss	-	-1	germline	1	0.0832660885683902	0.270039475700733
13	50493780	50503365	1	loss	A	-1	germline	1	0.0144391347082946	0.0370251016794815
13	50998590	51011370	2	neutral	AA	100	somatic	0	0.128782910213772	0.225998955951342
13	57177720	57216060	1	loss	A	-1	germline	1	2.00312615551784e-09	7.95115084883946e-11
13	63024570	63059715	3	gain	AAB	0.321848	germline	1	2.26770311030273e-06	1.98102755832874e-06
13	63059715	63069300	4	gain	AAAB	0.772203	germline	1	0.00270200000516905	0.00496050037757767
13	63983070	64050165	2	neutral	AA	55.0709	somatic	0	0.778649472659522	0.773869092514961
13	72270900	72274095	1	loss	A	-1	germline	1	0.083288102367972	0.270077707739626
13	75386025	75430755	2	neutral	AA	28.4224	somatic	0	0.6407375881571	0.651940975980975
13	76098510	76111290	2	neutral	AA	100	somatic	0	0.436198939163893	0.631853620240158
13	78680070	78696045	2	neutral	AA	100	somatic	0	0.12797943218448	0.302351975366812
13	82376685	82395855	2	neutral	AA	100	somatic	0	0.97621409324024	0.838796303162356
13	82590750	82600335	1	loss	A	-1	germline	1	0.014349595710901	0.036761992732577
13	90207630	90214020	1	loss	A	-1	germline	1	0.0158452915146494	0.041290321835971
13	99335745	99428400	2	neutral	AA	22.4685	somatic	0	0.0230419053617206	0.0167068305508024
13	101239965	101246355	1	loss	A	-1	germline	1	0.0143508394014373	0.0367455092300065
13	103636215	103664970	2	neutral	AA	36.8373	somatic	0	0.985001341372923	0.865904446574453
13	103952520	103978080	2	neutral	AA	100	germline	1	0.892347644004618	0.990848781306401
13	107620380	107633160	2	neutral	AA	54.5679	somatic	0	0.155551893107426	0.374619847102479
13	109214685	109221075	1	loss	A	-1	somatic	0	0.0144170160840317	0.0368884560229583
13	113841045	113844240	3	gain	AAB	6.56375	somatic	0	0.0832975382966051	0.270094094108602
13	114154155	114157350	1	loss	A	-1	somatic	0	0.0833478778752918	0.270181500332682
14	18658800	18693945	1	loss	A	-1	germline	1	0.00291546185111632	0.0222398920870164
14	22093425	22505580	1	loss	A	-1	somatic	0	3.52049682805375e-81	0
14	24467310	24483285	2	neutral	AA	26.8695	somatic	0	0.427935757083895	0.711700068942239
14	31723155	31767885	2	neutral	AA	100	somatic	0	0.45845839325952	0.885088511590011
14	35135415	35145000	1	loss	A	-1	germline	1	0.00272602184510999	0.00503505981410257
14	41142015	41193135	1	loss	A	-1	germline	1	1.98479372383818e-11	1.89515070303514e-13
14	48784455	48832380	2	neutral	AA	15.7375	somatic	0	0.776108486031749	0.789818851331539
14	50873985	50883570	2	neutral	AA	72.3092	somatic	0	0.106983320019069	0.426436197921872
14	51806925	51832485	2	neutral	AA	54.5873	germline	1	0.992439320672452	0.295435350382415
14	51934725	51966675	2	neutral	AA	37.2597	somatic	0	0.380521790111602	0.507759665471222
14	54241515	54247905	1	loss	A	-1	somatic	0	0.014467169537582	0.037059049178255
14	61158690	61171470	2	neutral	AA	100	somatic	0	0.630842871071104	0.362162218443637
14	62190675	62580465	2	neutral	AA	87.3417	somatic	0	0.00547131299127967	0.0112803180022808
14	69548760	69555150	1	loss	A	-1	germline	1	0.0144015383559569	0.0368986045427302
14	73532925	73536120	1	loss	A	-1	germline	1	0.0833038293967656	0.270105018757755
14	74437110	74469060	2	neutral	AA	25.0759	somatic	0	0.656543570011051	0.661778905601717
14	91290735	91293930	3	gain	AAB	4.54362	germline	1	0.083303042988198	0.270103653158966
14	91479240	91488825	2	neutral	AA	100	germline	1	0.759843440183626	0.972935472253591
14	94456980	94469760	2	neutral	AA	100	germline	1	0.532623363701012	0.9148974018295
14	98233470	98361270	2	neutral	AA	42.7641	germline	1	0.0990145836285926	0.284890156558354
14	99926820	99930015	5	gain	AAABB	98.0459	somatic	0	0.0832833847283647	0.270069514827257
14	101482785	101719215	2	neutral	AA	14.3502	germline	1	0.000181554674488111	0.000502504611346488
14	101719215	101725605	1	loss	A	-1	germline	1	0.0147016917983789	0.0378089717488664
14	101725605	101763945	2	neutral	AA	55.0713	germline	1	0.866280437490078	0.873436982664404
14	103361445	103486050	2	neutral	AA	38.9196	somatic	0	0.011351539677665	0.00720622458715703
14	103498830	103511610	2	neutral	AA	100	somatic	0	0.705176649879941	0.669985610830137
14	105348735	106875945	2	neutral	AA	13.6788	somatic	0	0.0124774257293832	0.0790217134746557
15	0	17080470	6	gain	-	-1	germline	1	NA	NA
15	17080470	17083665	16	gain	-	-1	germline	1	0.0832653024484434	0.270038110343837
15	17083665	20339370	6	gain	-	-1	germline	1	0.791795980529502	0.568612649544002
15	20339370	20342565	15	gain	-	-1	germline	1	0.0832653024484434	0.270038110343837
15	20342565	20668455	6	gain	-	-1	germline	1	4.24649759644261e-10	1.02341468632972e-11
15	20668455	20671650	5	gain	-	-1	germline	1	0.0832818122299323	0.270066783896785
15	22224420	22272345	3	gain	AAB	8.41398	germline	1	0.000107835807148385	9.10211765765556e-05
15	23496030	23505615	2	neutral	AA	7.04531	somatic	0	0.0206499147329326	0.0357286904563336
15	25528050	25531245	3	gain	AAB	8.27327	somatic	0	0.0833077615298098	0.270111846827248
15	27521730	27528120	2	neutral	AA	100	somatic	0	0.26684872422062	0.278806590405124
15	34825500	34841475	2	neutral	AA	100	somatic	0	0.214439041122813	0.394024316349546
15	34921350	34946910	2	neutral	AA	100	somatic	0	0.26273031018982	0.706773805769473
15	39963060	40036545	2	neutral	AA	54.5689	somatic	0	0.704361293527906	0.718855711927039
15	40880025	41189940	2	neutral	AA	43.7969	somatic	0	0.000500397893087669	0.00159298603916169
15	42570180	42582960	2	neutral	AA	38.7332	somatic	0	0.418929116030951	0.664230226938712
15	44436060	44471205	2	neutral	AA	36.3787	somatic	0	0.0106002581116002	0.0651492602264558
15	46247625	46285965	2	neutral	AA	100	somatic	0	0.0420832339972506	0.11829584373632
15	50084820	50088015	1	loss	A	-1	somatic	0	0.0833376506545263	0.270163744272782
15	53877285	53899650	2	neutral	AA	54.7752	somatic	0	0.445567789663796	0.881369137630595
15	63446310	63468675	2	neutral	AA	80.2876	somatic	0	0.371976894715219	0.687930704603074
15	63925560	63931950	2	neutral	AA	54.8482	somatic	0	0.082988445419983	0.114450440106512
15	64487880	64491075	2	neutral	AA	100	somatic	0	0.862587756375607	0.922866488554204
15	72091980	72095175	1	loss	A	-1	germline	1	0.0832770948789421	0.270058591226321
15	77037840	77041035	1	loss	A	-1	germline	1	0.0832660885683902	0.270039475700733
15	77715180	77721570	1	loss	A	-1	somatic	0	0.0144450130413623	0.0369369654385184
15	78037875	78047460	2	neutral	AA	35.9799	somatic	0	0.545253034095501	0.79939887481528
15	79437285	79440480	1	loss	A	-1	somatic	0	0.083415560484941	0.270298984952678
15	83871945	83875140	1	loss	A	-1	somatic	0	0.0833510249169709	0.270186963907078
15	88821000	88830585	2	neutral	AA	100	germline	1	0.835509428043227	0.705556895544106
15	91437705	91440900	1	loss	A	-1	germline	1	0.0832770948789421	0.270058591226321
15	93469725	93476115	2	neutral	AA	100	somatic	0	0.0626941587093895	0.123096482119625
16	1022400	1025595	5	gain	AAAAA	4.82974	germline	1	0.0832818122299323	0.270066783896785
16	3044835	3223755	2	neutral	AA	72.7462	somatic	0	0.199481626931741	0.521323938798425
16	10377360	10406115	2	neutral	AA	93.3704	germline	1	0.312355081586809	0.502399178317917
16	11073870	11109015	2	neutral	AA	100	somatic	0	0.121953517646947	0.218478903165657
16	11377395	11454075	2	neutral	AA	36.3786	germline	1	0.872944448866537	0.54198340233347
16	19933605	19952775	1	loss	A	-1	germline	1	2.22120461589927e-05	1.24085277573016e-05
16	20566215	20569410	1	loss	A	-1	somatic	0	0.08330854797446	0.270113212456274
16	21559860	21582225	3	gain	AAB	6.03737	germline	1	4.62341987531782e-06	1.68627175323177e-06
16	22393755	22425705	2	neutral	AA	100	somatic	0	0.861469862665039	0.514763590952618
16	22614210	22694085	3	gain	AAB	1.2849	somatic	0	2.38659442886833e-17	0
16	22694085	22697280	3	gain	AAB	34.119	germline	1	0.0833242781304175	0.270140526094944
16	23035950	23039145	1	loss	A	-1	somatic	0	0.0832770948789421	0.270058591226321
16	23748435	23751630	1	loss	A	-1	somatic	0	0.0832676608263205	0.270042206429631
16	28604835	28608030	3	gain	-	-1	somatic	0	0.0833628271804959	0.270207453029222
16	29761425	29767815	2	neutral	AA	100	somatic	0	0.722326202089761	0.973265567453684
16	34061895	34065090	26	gain	AAAAAAAAAAAAAAAAABBBBBBBBB	11.3311	germline	1	0.0832653024484434	0.270038110343837
16	34068285	34071480	1	loss	A	-1	germline	1	0.083406900924931	0.270283955771148
16	34074675	34084260	2	neutral	AA	54.5678	germline	1	0.0309280926574409	0.0809617030943012
16	34084260	34087455	14	gain	AAAAAAAAAABBBB	100	germline	1	0.0832653024484434	0.270038110343837
16	34087455	34093845	2	neutral	AA	64.5667	germline	1	0.0857339811379661	0.278105662074643
16	34093845	34097040	4	gain	AAAA	12.0548	germline	1	0.0832857435211099	0.27007361126076
16	34097040	34100235	10	gain	AAAAAAABBB	4.82379	germline	1	0.0832684469643041	0.270043571801632
16	34160940	34164135	4	gain	AABB	1.4836	somatic	0	0.0832951792332675	0.270089997448323
16	34173720	34176915	5	gain	AAABB	0.76104	germline	1	0.0832818122299323	0.270066783896785
16	34192890	34205670	3	gain	AAB	2.86451	somatic	0	0.014317168992218	0.0366504808074047
16	34902180	34905375	4	gain	-	-1	germline	1	0.0832865297973843	0.270074976748674
16	34905375	34959690	3	gain	AAA	1.42654	germline	1	2.26862456447082e-05	1.28033564306129e-05
16	35978895	36087525	2	neutral	AA	1.9249	somatic	0	2.80098727394061e-09	5.29518039416033e-08
16	36122670	36125865	5	gain	-	-1	germline	1	0.0832818122299323	0.270066783896785
16	48474540	48477735	1	loss	A	-1	somatic	0	0.0833266378613048	0.270144623314618
16	58743270	58756050	2	neutral	AA	100	germline	1	0.445915703069803	0.35148343994647
16	62200260	62216235	2	neutral	AA	100	somatic	0	0.42893221316119	0.728591264157472
16	66995955	66999150	2	neutral	AA	100	somatic	0	0.902974494906374	0.93694064738044
16	69801165	69804360	2	neutral	AA	100	somatic	0	0.599929470994286	0.789846099227845
16	70149420	70162200	3	gain	AAB	3.69257	germline	1	0.000532982232397153	0.000672144099394423
16	71711775	71714970	2	neutral	AA	100	germline	1	0.605688035923188	0.793539254321269
16	73146330	73152720	2	neutral	AA	100	somatic	0	0.015862127797095	0.0405819930334526
16	74239020	74261385	1	loss	A	-1	germline	1	4.61335626872556e-06	1.67207323253926e-06
16	75430755	75453120	2	neutral	AA	36.4305	somatic	0	0.167235647889898	0.409461296538545
16	76504275	76510665	1	loss	A	-1	germline	1	0.0143718721571909	0.0367488803294106
16	81149805	81156195	2	neutral	AA	54.5678	somatic	0	0.0200465853940815	0.0472028548303095
16	88942410	88964775	2	neutral	AA	52.2334	somatic	0	0.201498271343714	0.345671946258684
17	7511445	7527420	2	neutral	AA	100	germline	1	0.113674843004304	0.143841010837809
17	11687310	11732040	2	neutral	AA	21.8302	somatic	0	0.277686301174796	0.486034837728439
17	15987780	16153920	2	neutral	AA	100	somatic	0	0.176697855392775	0.177916176578211
17	19371285	19380870	2	neutral	AA	100	germline	1	0.993155462312088	0.968354971888567
17	21291480	21304260	4	gain	AABB	0.283151	germline	1	0.000532510044817007	0.000671376944623714
17	21853800	21860190	5	gain	-	-1	germline	1	0.0143120810186526	0.036641139249493
17	21860190	21885750	3	gain	-	-1	germline	1	1.00352931637698e-06	2.50624418995926e-07
17	21975210	21978405	27	gain	-	-1	germline	1	0.0832653024484434	0.270038110343837
17	21978405	22154130	6	gain	AAAABB	0.247121	somatic	0	1.97642281474404e-09	7.56182894079416e-11
17	22157325	22160520	3	gain	AAB	3.08699	germline	1	0.0832951792332675	0.270089997448323
17	22710060	22719645	2	neutral	AA	6.00191	germline	1	0.0959897822246726	0.08441009807288
17	26783685	26806050	3	gain	-	-1	germline	1	4.73972841010869e-06	1.849015176969e-06
17	26812440	26815635	5	gain	-	-1	germline	1	0.0832818122299323	0.270066783896785
17	26815635	26828415	4	gain	-	-1	germline	1	0.000532663025859711	0.000671637137223735
17	26828415	26841195	3	gain	-	-1	germline	1	0.000533253479290299	0.000672198927598178
17	26847585	26876340	3	gain	-	-1	germline	1	9.72957799221931e-07	2.30090397512761e-07
17	26876340	26879535	6	gain	-	-1	germline	1	0.0832786673052213	0.270061322096314
17	26937045	26940240	20	gain	AAAAAAAAAAAAABBBBBBB	11.0093	germline	1	0.0832653024484434	0.270038110343837
17	29333295	29336490	1	loss	A	-1	somatic	0	0.083310120881802	0.270115943729429
17	35605080	35704125	2	neutral	AA	35.7272	somatic	0	0.869911293781315	0.887181009361515
17	39499785	39563685	2	neutral	AA	100	germline	1	0.941455145499441	0.305009428898901
17	51973065	52049745	2	neutral	AA	100	germline	1	0.972593564580177	0.57767329501126
17	53775045	53781435	1	loss	A	-1	germline	1	0.0143533270677463	0.0367530009294444
17	55161675	55193625	2	neutral	AA	40.4604	germline	1	0.0560628541915314	0.065619562360304
17	59446170	59452560	3	gain	AAB	67.3693	somatic	0	0.0143246176831639	0.0366684224398386
17	67561470	67577445	2	neutral	AA	54.6572	somatic	0	0.101618711105216	0.159121946979674
18	5306895	5310090	1	loss	A	-1	somatic	0	0.0833423707839451	0.270171939271517
18	5322870	5326065	1	loss	A	-1	germline	1	0.083289674962612	0.270080438750729
18	29783790	29786985	1	loss	A	-1	somatic	0	0.0833282110453025	0.270147354819595
18	41282595	41285790	1	loss	A	-1	germline	1	0.0836149314261366	0.270644824456063
18	41285790	41288985	0	loss	-	-1	germline	1	0.0832653024484434	0.270038110343844
18	47036790	47052765	2	neutral	AA	100	somatic	0	0.675558166035253	0.98176786921351
18	51260580	51279750	2	neutral	AA	54.5679	somatic	0	0.928064944025069	0.883353063044181
18	51279750	51282945	3	gain	-	-1	somatic	0	0.0838668619968051	0.271081342881866
18	54219150	54315000	2	neutral	AA	19.6169	somatic	0	0.351841092199216	0.686653595512732
18	57024360	57027555	3	gain	AAB	20.5015	somatic	0	0.0833171992625344	0.27012823470808
18	57088260	57091455	2	neutral	AA	100	somatic	0	0.533939197075635	0.744952602978672
18	57327885	57331080	2	neutral	AA	36.3786	somatic	0	0.131150168142495	0.345279645925299
18	58695345	58698540	2	neutral	AA	100	somatic	0	0.251985951770194	0.495122865350101
18	65829780	65893680	2	neutral	AA	51.459	somatic	0	0.00304794751815384	0.0117107814962706
18	66676455	66772305	2	neutral	AA	36.3857	somatic	0	0.525023412642821	0.524270814207701
18	66864960	66877740	2	neutral	AA	36.6091	somatic	0	0.175617956203207	0.394071267784071
18	67660515	67724415	2	neutral	AA	100	somatic	0	0.705775267365595	0.678850507504423
18	68373000	68404950	2	neutral	AA	54.6792	somatic	0	0.58512170672436	0.873303912840995
18	69392205	69436935	2	neutral	AA	25.3128	somatic	0	0.339193024470711	0.613174823635102
18	69609465	69612660	2	neutral	AA	100	somatic	0	0.774977857006988	0.886587026588894
18	69925770	69954525	2	neutral	AA	100	somatic	0	0.793039920671093	0.805129223740036
18	70382655	70392240	2	neutral	AA	54.5678	germline	1	0.1275947219277	0.34566684630742
18	72526500	72545670	2	neutral	AA	100	somatic	0	0.242315466284908	0.617034267936906
18	74692710	74715075	2	neutral	AA	100	somatic	0	0.0907745855451882	0.312771836642611
18	76216725	76255065	2	neutral	AA	100	somatic	0	0.0379135943595005	0.0731027982048441
18	76743900	76750290	2	neutral	AA	54.568	somatic	0	0.111427653521105	0.33096781402112
18	76964355	76967550	3	gain	AAA	51.1651	somatic	0	0.0833321441105532	0.270154183670221
18	77245515	77255100	2	neutral	AA	29.9109	somatic	0	0.066324526930625	0.28385956288629
18	79197660	79200855	5	gain	AAABB	26.6793	germline	1	0.0832833847283647	0.270069514827257
18	79520355	79523550	1	loss	A	-1	somatic	0	0.0833832876438517	0.270242970193843
19	2958570	2987325	2	neutral	AA	36.5699	germline	1	0.0253165420852288	0.146455744600468
19	7447545	7453935	6	gain	AAAABB	8.22007	germline	1	0.0143099718388982	0.036637776798652
19	7546590	7556175	2	neutral	AA	100	germline	1	0.12715630310327	0.174317052279463
19	8345340	8348535	0	loss	-	-1	germline	1	0.0832653024484434	0.270038110343844
19	8882100	8920440	2	neutral	AA	0.702258	germline	1	0.132755469917836	0.132081041269968
19	14933430	14939820	1	loss	A	-1	germline	1	0.0143241830823238	0.0366856237145391
19	17399970	17415945	2	neutral	AA	54.5678	somatic	0	0.0327828267057431	0.103633369948023
19	19863315	20058210	2	neutral	AA	5.75009	somatic	0	0.743790530885671	0.816873927414814
19	21563055	21575835	3	gain	AAB	1.63574	germline	1	0.00270412641508504	0.00496505459090901
19	24329925	24387435	4	gain	AABB	0.413494	germline	1	2.01378030147731e-13	4.44089209850063e-16
19	27336420	27346005	3	gain	AAB	2.31045	germline	1	0.00270489591856291	0.00496930864762546
19	27346005	27358785	6	gain	AAAABB	0.342571	germline	1	0.000532274097230634	0.000671144220822595
19	27358785	27377955	6	gain	AAAABB	0.290457	germline	1	0.00010758527023906	9.08450083332291e-05
19	27377955	27384345	4	gain	AAAB	6.9796	germline	1	0.0143122050965896	0.036641139249493
19	27384345	27387540	6	gain	AAAABB	1.0203	germline	1	0.0832763086748215	0.270057225798874
19	27387540	27393930	5	gain	AAABB	0.817257	germline	1	0.0143108402914706	0.0366392711879167
19	27393930	27397125	6	gain	AAAABB	1.15987	germline	1	0.0832763086748215	0.270057225798874
19	27397125	27400320	5	gain	AAABB	1.92131	germline	1	0.0832818122299323	0.270066783896785
19	34390980	34394175	5	gain	AAABB	1.5207	germline	1	0.0832818122299323	0.270066783896785
19	36349515	36352710	0	loss	-	-1	germline	1	0.0832653024484434	0.270038110343844
19	40340070	40378410	2	neutral	AA	18.4036	somatic	0	0.198500392974637	0.246453355199695
19	51631200	51643980	1	loss	A	-1	germline	1	0.000533249103319991	0.000672788595653229
19	56934900	56963655	2	neutral	AA	86.3898	somatic	0	0.756602960630115	0.894864416697743
20	63900	67095	8	gain	-	-1	germline	1	0.0832731639184649	0.270051764139505
20	17738640	17748225	2	neutral	AA	100	somatic	0	0.902021634305514	0.971533867695336
20	21304260	21307455	1	loss	A	-1	germline	1	0.0832660885683902	0.270039475700733
20	24735690	24796395	2	neutral	AA	13.5719	germline	1	0.0179804626966094	0.0504349025418387
20	25719750	25726140	3	gain	AAB	4.59064	germline	1	0.0143161760916163	0.0366478649611728
20	25857135	25869915	2	neutral	AA	5.45678	germline	1	0.798097250055297	0.919631108441876
20	26320410	26323605	1	loss	A	-1	germline	1	0.0833651877956291	0.270211550989733
20	26333190	26381115	2	neutral	AA	3.25006	germline	1	0.000332951863473912	0.000830209677133875
20	28780560	28786950	9	gain	-	-1	germline	1	0.0143081110256458	0.0366359088870641
20	28802925	28956285	10	gain	-	-1	germline	1	2.03571407385545e-07	3.04900251713036e-08
20	29256615	29259810	3	gain	-	-1	germline	1	0.083304615811347	0.270106384361569
20	29263005	29266200	14	gain	-	-1	germline	1	0.0832653024484434	0.270038110343837
20	29266200	29269395	4	gain	-	-1	germline	1	0.0832857435211099	0.27007361126076
20	29272590	29314125	3	gain	-	-1	germline	1	9.26484489604082e-09	5.64075230968797e-10
20	29886030	29895615	5	gain	-	-1	germline	1	0.00270145733690801	0.00495958999454471
20	31164030	31167225	5	gain	-	-1	germline	1	0.0832818122299323	0.270066783896785
20	31167225	31183200	3	gain	-	-1	germline	1	0.000112962277177841	0.000105005256505142
20	31183200	31189590	18	gain	-	-1	germline	1	0.0143061263934502	0.0366314262392047
20	31224735	31231125	4	gain	AAAA	1.97088	germline	1	0.0143130736687173	0.0366422601264377
20	31231125	31240710	3	gain	AAB	12.6649	germline	1	0.00271448619114996	0.00499169730941984
20	31240710	31243905	58	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBBB	100	germline	1	0.0832653024484434	0.270038110343837
20	31243905	31247100	3	gain	AAA	6.11509	germline	1	0.0834289448736278	0.270322213069116
20	32921280	32927670	2	neutral	AA	100	somatic	0	0.68347363352069	0.766504411076803
20	34553925	34665750	2	neutral	AA	36.3786	germline	1	0.00125642905801248	0.0119919671846707
20	46787580	46790775	3	gain	AAB	11.462	somatic	0	0.0833077615298098	0.270111846827248
20	51628005	51730245	2	neutral	AA	21.8455	somatic	0	0.00517544801822297	0.00335122509194818
20	59685795	59730525	2	neutral	AA	54.5682	germline	1	0.42873268771079	0.861751671644034
20	62986230	63091665	2	neutral	AA	3.46991	somatic	0	0.838752865593126	0.43829270876419
21	10661715	10690470	5	gain	AAABB	2.50152	germline	1	2.03797858979704e-07	3.05026194302727e-08
21	10690470	10693665	52	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBBBB	100	germline	1	0.0832653024484434	0.270038110343837
21	10693665	10703250	5	gain	AAAAA	3.15906	germline	1	0.00270129907742588	0.00495921071348493
21	10703250	10709640	8	gain	AAAAAAAB	26.5458	germline	1	0.0143086072216412	0.0366362824627158
21	10709640	10738395	5	gain	AAABB	1.32716	somatic	0	2.03743843089797e-07	3.04956220276154e-08
21	14035635	14038830	2	neutral	AA	54.8425	somatic	0	0.676658452540286	0.836258304734621
21	25294815	25317180	2	neutral	AA	100	somatic	0	0.735589595865253	0.905765636098882
21	27582435	27630360	2	neutral	AA	8.91519	somatic	0	0.00671749428489976	0.003677416506638
21	34755210	34793550	2	neutral	AA	54.5728	somatic	0	0.88516878582207	0.945393815382494
21	34969275	34982055	2	neutral	AA	54.5678	somatic	0	0.662819039224747	0.828553775070586
21	35841510	35844705	2	neutral	AA	100	somatic	0	0.40184605213651	0.640646690973354
21	36173790	36176985	2	neutral	AA	100	somatic	0	0.275628490581997	0.520406528561372
21	36646650	36653040	2	neutral	AA	54.5685	somatic	0	0.976134034339967	0.94431738298073
21	39493395	39525345	2	neutral	AA	12.1495	somatic	0	0.00731092013555254	0.00875559208331056
21	41803380	41806575	4	gain	AAAA	6.64682	germline	1	0.0832904612689517	0.270081804263832
21	44356185	44368965	2	neutral	AA	15.5931	germline	1	0.0896048355082485	0.319478465361651
22	11626605	11629800	4	gain	AABB	17.7388	germline	1	0.0832936065544425	0.270087266366669
22	17876025	17879220	4	gain	AAAA	2.03194	germline	1	0.0832943928908483	0.270088631904976
22	20393685	20396880	2	neutral	AA	100	somatic	0	0.234464342096787	0.475681606838746
22	27068040	27077625	2	neutral	AA	100	germline	1	0.869295439137642	0.98762547781883
22	27489780	27492975	2	neutral	AA	100	somatic	0	0.584799498886943	0.779976135998395
22	28898775	28901970	2	neutral	AA	100	somatic	0	0.552253327712839	0.7579316105461
22	31023450	31515480	2	neutral	AA	16.7681	somatic	0	0.0349963704312273	0.0183203592583542
22	31707180	32323815	2	neutral	AA	37.9633	somatic	0	0.00309003127094895	0.0175997492458445
22	33125760	33157710	2	neutral	AA	100	germline	1	0.216268086243105	0.154675352105892
22	33886170	33889365	2	neutral	AA	100	somatic	0	0.255262718892596	0.498684669935598
22	34467660	34470855	1	loss	A	-1	germline	1	0.0832747362846181	0.270054494959117
22	35192925	35196120	1	loss	A	-1	somatic	0	0.0834344565980491	0.270331778011028
22	35509230	35512425	2	neutral	AA	100	somatic	0	0.196993742942649	0.43189214817324
22	36742500	36745695	2	neutral	AA	100	somatic	0	0.247841259066794	0.490600606347795
22	36745695	36752085	1	loss	A	-1	germline	1	0.0144352586645972	0.0370145457838913
22	37697805	37701000	2	neutral	AA	100	somatic	0	0.0941454547999019	0.28844959268792
22	39419910	39423105	2	neutral	AA	100	somatic	0	0.153270262733881	0.376044504774815
22	41614875	41618070	2	neutral	AA	100	germline	1	0.879502970619724	0.928973817700149
22	42522255	42554205	3	gain	AAB	3.85547	germline	1	0.000120163745826223	0.000127317621094303
22	43630920	43643700	2	neutral	AA	100	germline	1	0.635376104643947	0.498807284838853
22	47327535	47340315	2	neutral	AA	100	somatic	0	0.34527959332085	0.541289204835727
22	48982545	49004910	2	neutral	AA	36.6123	somatic	0	0.960766641455901	0.662373434282588
22	50640750	50643945	3	gain	AAA	100	germline	1	0.0832951792332675	0.270089997448323
X	3524085	3530475	3	gain	AAB	6.26293	somatic	0	0.0189992181552284	0.0510437226463404
X	6332490	6431535	2	neutral	AA	12.1263	somatic	0	0.0301746215132262	0.0499417780944573
X	26083980	26087175	0	loss	-	-1	germline	1	0.0832653024484434	0.270038110343844
X	30745485	30790215	2	neutral	AA	35.0347	somatic	0	0.718403014453181	0.940230789650279
X	30806190	30908430	2	neutral	AA	36.4726	somatic	0	0.938359718259204	0.983768170151064
X	48880305	50225400	2	neutral	AA	16.5039	somatic	0	0.556541051534009	0.689771305521766
X	50225400	50228595	0	loss	-	-1	germline	1	0.0832660885683902	0.270039475700733
X	58423770	58436550	1	loss	A	-1	germline	1	0.000532921000894352	0.000672034455564297
X	62538930	62692290	2	neutral	AA	3.11187	somatic	0	8.4303482926379e-14	3.50575124485886e-12
X	67903335	67909725	1	loss	A	-1	germline	1	0.01434561654003	0.036702083713252
X	77865345	77868540	0	loss	-	-1	germline	1	0.0832653024484434	0.270038110343844
X	93540015	93546405	1	loss	A	-1	somatic	0	0.0143594234577795	0.03675712193368
X	98121645	98172765	2	neutral	AA	100	somatic	0	0.273948635161307	0.166965080162826
X	99795825	99990720	2	neutral	AA	41.2574	germline	1	0.00835662520878109	0.0485881752222673
X	101799090	101805480	3	gain	AAB	6.48575	somatic	0	0.0143723703030996	0.0368088561621188
X	108770580	108776970	1	loss	A	-1	somatic	0	0.0145503032176544	0.0373665638018025
X	131135580	131138775	1	loss	A	-1	germline	1	0.0832668746943492	0.270040841062662
X	141787710	141794100	1	loss	A	-1	somatic	0	0.0147735665163444	0.0380315014110626
X	145340550	145343745	1	loss	A	-1	germline	1	0.0832660885683902	0.270039475700733
X	148426920	148430115	1	loss	A	-1	germline	1	0.083272377744407	0.270050398737268
