chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	820166	823395	4	gain	-	-1	somatic	0	0.0832795442047304	0.270062840796142
1	5666895	5676582	3	gain	-	-1	somatic	0	0.00270203613633835	0.00496166366421158
1	16719762	16722991	4	gain	-	-1	somatic	0	0.0832732164322876	0.270051851120787
1	16722991	16726220	6	gain	-	-1	somatic	0	0.0832684708585545	0.270043609078501
1	31431086	31434315	5	gain	-	-1	somatic	0	0.0832708436180359	0.270047730076691
1	34637483	34647170	1	loss	A	-1	somatic	0	0.00476401354947303	0.00884042740525481
1	54624993	54631451	1	loss	A	-1	germline	1	0.0156216150550533	0.0402976445884122
1	55661502	55667960	1	loss	A	-1	germline	1	0.0143286046720599	0.0366983744105396
1	72290852	72345745	1	loss	A	-1	germline	1	1.05045559076336e-11	1.54765089632747e-13
1	93821824	93828282	1	loss	A	-1	somatic	0	0.0206987639067224	0.0564223406477018
1	105472056	105481743	1	loss	A	-1	somatic	0	0.00554785070972441	0.00941853136576221
1	125068857	125075315	3	gain	-	-1	germline	1	0.0143199849020278	0.0366667686347795
1	125081773	125085002	5	gain	-	-1	germline	1	0.0832692617722961	0.270044982739463
1	125162498	125165727	6	gain	-	-1	germline	1	0.0832684708585545	0.270043609078501
1	143545195	143735706	1	loss	A	-1	germline	1	1.02631459872261e-28	0
1	152534731	152537960	2	neutral	AA	43.4639	somatic	0	0.367656231718591	0.610316790492152
1	152583166	152612227	1	loss	A	-1	germline	1	1.38334583699216e-06	2.0698793989915e-07
1	153877995	153881224	2	neutral	AA	100	somatic	0	0.855090638693386	0.920103279365921
1	153929659	153932888	2	neutral	AA	100	somatic	0	0.542877014053236	0.751313813501268
1	157116682	157139285	2	neutral	AA	36.514	somatic	0	0.32219482501269	0.0523374775223457
1	159974347	159980805	2	neutral	AA	100	somatic	0	0.200748086174524	0.308357050516538
1	163577911	163616659	2	neutral	AA	54.511	somatic	0	0.447485478498475	0.788977732558611
1	164640252	164653168	2	neutral	AA	54.5678	somatic	0	0.814377085243974	0.985527710191624
1	166164340	166167569	2	neutral	AA	100	somatic	0	0.652397592586969	0.822204803287637
1	168169549	168192152	2	neutral	AA	54.6578	somatic	0	0.166485101876783	0.199714164150597
1	169257722	169273867	1	loss	A	-1	germline	1	0.000212344390801495	0.000246790306945854
1	170332979	170336208	2	neutral	AA	100	somatic	0	0.76125246330437	0.880173280532027
1	178163304	178198823	2	neutral	AA	30.656	somatic	0	0.0918977322759318	0.107762243379498
1	178725150	178731608	2	neutral	AA	54.5678	somatic	0	0.270900416384326	0.723748958638796
1	179435530	179496881	2	neutral	AA	70.5064	somatic	0	0.843211130408328	0.974067308320996
1	182073623	182076852	2	neutral	AA	100	somatic	0	0.24914299718166	0.492005627740981
1	187746976	187753434	1	loss	A	-1	somatic	0	0.0152617879760531	0.0381311207322547
1	203714381	203720839	1	loss	A	-1	somatic	0	0.0218917566885019	0.060201364186756
1	207366380	207372838	1	loss	A	-1	germline	1	0.0203606190199784	0.0553520676776948
1	222200406	222206864	1	loss	A	-1	somatic	0	0.0219571502126667	0.0523273495456431
1	224011875	224015104	9	gain	AAAAAAAAA	1.36507	germline	1	0.0832653072644424	0.270038114485656
1	228067499	228073957	1	loss	A	-1	somatic	0	0.0210440698214186	0.0575175802472623
1	229100779	229107237	3	gain	AAB	53.7515	somatic	0	0.0143124931682632	0.0366412004520658
1	229675541	229685228	0	loss	-	-1	germline	1	0.0143153645907963	0.0366592469611459
1	234774132	234777361	4	gain	AAAB	19.1357	germline	1	0.0832787532118746	0.27006146706887
1	234777361	234783819	8	gain	AAAAAABB	3.11312	germline	1	0.014306127913165	0.036631428505439
1	236094793	236098022	5	gain	AAABB	10.2488	germline	1	0.0832692617722961	0.270044982739463
1	240182707	240185936	4	gain	AABB	100	somatic	0	0.0832763802698226	0.270057345917659
1	248613626	248775076	2	neutral	AA	100	somatic	0	0.115419713562812	0.218684357967813
2	242175	316442	2	neutral	AA	100	somatic	0	0.0305037720274622	0.167314460353343
2	723296	910578	2	neutral	AA	11.1462	germline	1	0.726057264254338	0.483904380717841
2	1701683	1714599	2	neutral	AA	36.2133	somatic	0	0.387102307056724	0.822955434104385
2	3180565	3183794	5	gain	AAAAA	3.19585	germline	1	0.0832692617722961	0.270044982739463
2	3183794	3199939	2	neutral	AA	14.7854	germline	1	0.0957684783172082	0.0654379147069908
2	3684289	3690747	1	loss	A	-1	somatic	0	0.0216808682287598	0.0554688608412587
2	6361130	6386962	2	neutral	AA	100	somatic	0	0.760216464333623	0.991388240876321
2	8782880	8808712	2	neutral	AA	70.2665	somatic	0	0.0817657641137765	0.188414140361486
2	11246607	11253065	2	neutral	AA	54.5755	somatic	0	0.833811575678674	0.633372652424913
2	12241139	12260513	2	neutral	AA	55.3573	somatic	0	0.340251202264308	0.840948779349087
2	13513365	13619922	2	neutral	AA	31.8949	somatic	0	0.636578491574414	0.451295386264441
2	32913197	32916426	4	gain	-	-1	germline	1	0.0832763802698226	0.270057345917659
2	32997151	33006838	1	loss	A	-1	somatic	0	0.00593206242359085	0.0109178753262092
2	34472804	34505094	1	loss	A	-1	germline	1	1.27998498230692e-06	1.86741505370236e-07
2	52522914	52558433	1	loss	A	-1	germline	1	6.67628099302977e-07	2.01504364527594e-07
2	89772658	89782345	7	gain	-	-1	germline	1	0.00270001201488744	0.00495792388727001
2	89782345	89785574	4	gain	-	-1	germline	1	0.0832708436180359	0.270047730076691
2	89788803	89795261	3	gain	-	-1	germline	1	0.0143117441850775	0.0366419522347294
2	89795261	89814635	4	gain	-	-1	germline	1	0.000107551511115041	9.08313037710773e-05
2	89817864	89821093	4	gain	-	-1	germline	1	0.0832716345500342	0.270049103752956
2	89821093	89824322	3	gain	-	-1	germline	1	0.0832977387201887	0.270094437931198
2	89824322	89827551	7	gain	-	-1	germline	1	0.0832653072644424	0.270038114485656
2	89827551	89840467	30	gain	-	-1	germline	1	0.000532029660486508	0.000670952788754731
2	89840467	89843696	14	gain	-	-1	germline	1	0.0832653072644424	0.270038114485656
2	89843696	89850154	4	gain	-	-1	germline	1	0.0143088734031512	0.0366355625122378
2	91409761	91416219	4	gain	-	-1	germline	1	0.0143084989907868	0.0366359383512779
2	106263161	106269619	1	loss	A	-1	somatic	0	0.0199396278751517	0.0458978514991545
2	109198322	109201551	12	gain	-	-1	germline	1	0.0832653072644424	0.270038114485656
2	125685596	125695283	1	loss	A	-1	somatic	0	0.00557684643312905	0.00942826067972069
2	132243695	132246924	4	gain	-	-1	somatic	0	0.0832779622251048	0.270060093346699
2	146105792	146118708	1	loss	A	-1	germline	1	0.00118596345785178	0.00133732690927346
2	176400270	176409957	1	loss	A	-1	germline	1	0.0210264849114894	0.0574625820817006
2	227376493	227392638	3	gain	-	-1	germline	1	0.000108060440636652	9.17253595565937e-05
2	240085837	240092295	2	neutral	AA	100	somatic	0	0.119573952194332	0.230545464368433
2	241112659	241119117	2	neutral	AA	54.5678	somatic	0	0.68703133411139	0.706568324158058
3	187282	193740	1	loss	A	-1	germline	1	0.0253697500542021	0.0574048548865222
3	1430447	1436905	2	neutral	AA	36.3786	germline	1	0.18931967815231	0.356012824060843
3	1740431	1746889	1	loss	A	-1	germline	1	0.0203765261175413	0.0512061466099016
3	2796314	2802772	2	neutral	AA	54.5802	somatic	0	0.294819227076753	0.408623173163325
3	19990739	20000426	2	neutral	AA	100	somatic	0	0.197391348910425	0.250583450097947
3	20268433	20278120	1	loss	A	-1	germline	1	0.0208330268329015	0.0545521065959768
3	30649668	30662584	2	neutral	AA	100	somatic	0	0.0129454727530455	0.0307486246557067
3	32063970	32067199	0	loss	-	-1	germline	1	0.0832724254881181	0.270050477434319
3	39393800	39426090	2	neutral	AA	36.8312	somatic	0	0.922439188720505	0.695862314264845
3	41502337	41602436	2	neutral	AA	61.4582	somatic	0	0.798755474742811	0.952103613966477
3	47446926	47453384	1	loss	A	-1	somatic	0	0.021407705903082	0.0561022349194894
3	50656552	50659781	2	neutral	AA	100	somatic	0	0.0951960841557128	0.2901783176248
3	55771288	55787433	2	neutral	AA	100	somatic	0	0.80604617581479	0.829123090603068
3	57075804	57091949	2	neutral	AA	62.0439	somatic	0	0.207467912893568	0.606685826388979
3	59539531	59545989	2	neutral	AA	100	somatic	0	0.38185252460775	0.330558511276696
3	62797592	62823424	2	neutral	AA	100	somatic	0	0.570626834641452	0.413313284204262
3	67899412	67934931	2	neutral	AA	100	somatic	0	0.961559981969784	0.996676668394894
3	68690517	68700204	1	loss	A	-1	germline	1	0.00396126625931705	0.00945434170867387
3	75862126	75865355	2	neutral	AA	8.6625	germline	1	0.301484955850019	0.546983553535804
3	77780152	77783381	4	gain	AABB	2.47551	somatic	0	0.0832763802698226	0.270057345917659
3	80011391	80017849	1	loss	A	-1	somatic	0	0.0208489948260454	0.0564310877833172
3	85481317	85542668	1	loss	A	-1	germline	1	6.38010187982828e-13	3.77475828372553e-15
3	90273153	90508870	2	neutral	AA	0.722716	germline	1	1.11427750684376e-17	3.21964677141295e-15
3	90508870	90534702	3	gain	-	-1	somatic	0	2.49330963656315e-05	1.75345325396092e-05
3	90534702	90537931	1	loss	A	-1	somatic	0	0.123623342430072	0.334313541029984
3	90560534	90563763	4	gain	-	-1	germline	1	0.0832724254881181	0.270050477434321
3	93812137	94619387	2	neutral	AA	56.9265	somatic	0	0.697194883777464	0.287527887412507
3	96492207	96518039	1	loss	A	-1	germline	1	5.266611856683e-06	1.13507432086823e-06
3	98687927	98694385	1	loss	A	-1	germline	1	0.0276639770377446	0.0554548560200088
3	99269147	99398307	2	neutral	AA	100	somatic	0	0.797030486555231	0.983275810634202
3	101636004	101642462	1	loss	A	-1	somatic	0	0.0362044316575983	0.10451195999822
3	109272589	109291963	2	neutral	AA	57.2657	somatic	0	0.366161438467534	0.38072811796292
3	114426073	114438989	2	neutral	AA	100	somatic	0	0.034149774873292	0.0255043327560496
3	120402952	120503051	2	neutral	AA	100	somatic	0	0.259148625572666	0.3098543309824
3	121239263	121271553	2	neutral	AA	100	somatic	0	0.301598494255298	0.382033233304658
3	125198017	125365925	2	neutral	AA	94.9736	somatic	0	0.091017944677183	0.0590287611461366
3	127823194	127845797	2	neutral	AA	100	somatic	0	0.122009231511826	0.172726558710814
3	129198748	129237496	2	neutral	AA	36.3786	germline	1	0.115085745574373	0.536965623768197
3	129847777	129870380	2	neutral	AA	36.4058	somatic	0	0.188112902447776	0.513208171670688
3	131988604	131995062	1	loss	A	-1	somatic	0	0.0226279448508614	0.0528723248259558
3	135188543	135195001	2	neutral	AA	54.5774	somatic	0	0.314076669640938	0.681992838578304
3	136183075	136195991	2	neutral	AA	54.5678	somatic	0	0.555770681905129	0.67891577240198
3	137209897	137219584	2	neutral	AA	100	somatic	0	0.871042329483441	0.970657915363533
3	146667638	146674096	1	loss	A	-1	somatic	0	0.0237444902455675	0.0564217939904286
3	155844456	155883204	2	neutral	AA	72.4702	somatic	0	0.236101549550902	0.222001760257085
3	160419949	160426407	2	neutral	AA	100	somatic	0	0.504355844160391	0.414352137513733
3	162793264	162909508	1	loss	A	-1	somatic	0	8.37581534897772e-20	0
3	163045126	163051584	0	loss	-	-1	germline	1	0.0154793928474219	0.0401854571767003
3	167917687	167933832	2	neutral	AA	100	somatic	0	0.0184913545905122	0.0122221600514316
3	177737076	177769366	2	neutral	AA	19.0205	somatic	0	0.0746675788699263	0.198330416291545
3	179335431	179412927	2	neutral	AA	32.8731	somatic	0	0.36096756170187	0.410952430919392
3	187249710	187304603	2	neutral	AA	26.7995	somatic	0	0.859363610639397	0.738261447911705
3	193155551	193168467	1	loss	A	-1	germline	1	0.0201488269407046	0.0546828756583939
4	8647262	8727987	2	neutral	AA	100	somatic	0	0.56375136694875	0.649099916874254
4	10210098	10232701	1	loss	A	-1	germline	1	1.32709914517837e-05	5.57701533465682e-06
4	21753773	21824811	2	neutral	AA	100	germline	1	0.463561092465882	0.864891305845124
4	31815337	31818566	0	loss	-	-1	germline	1	0.0832660981538423	0.270039488126213
4	32829243	32842159	1	loss	A	-1	somatic	0	0.0274832139417707	0.0553010036593969
4	40294691	40297920	4	gain	AAAB	17.4654	germline	1	0.0832771712444208	0.270058719629629
4	40314065	40323752	1	loss	A	-1	germline	1	0.00558014254595914	0.009479523679357
4	49084029	49090487	2	neutral	AA	33.9813	somatic	0	0.357696974086	0.701534995900618
4	49145380	49151838	78	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBBBBBBBBBBBBB	100	germline	1	0.014306127913165	0.036631428505439
4	49645875	49655562	17	gain	AAAAAAAAAAAABBBBB	29.7332	germline	1	0.014306127913165	0.036631428505439
4	51815763	51818992	2	neutral	AA	57.3226	germline	1	0.21089144292322	0.44853993825076
4	62804050	62810508	1	loss	A	-1	germline	1	0.0228080203368591	0.0528862831162555
4	68519380	68622708	1	loss	A	-1	germline	1	1.15502825841958e-14	0
4	69265279	69365378	1	loss	A	-1	germline	1	3.66070887646952e-05	0.000181554194928935
4	69601095	69604324	0	loss	-	-1	germline	1	0.0832668890493276	0.270040861771874
4	82039203	82081180	2	neutral	AA	36.4128	somatic	0	0.408114513210354	0.66668876985018
4	82943323	83027277	2	neutral	AA	45.6188	somatic	0	0.969069418019485	0.83573049291438
4	85910774	86001186	2	neutral	AA	61.0348	somatic	0	0.418163631213039	0.368214202016803
4	114587523	114593981	1	loss	A	-1	somatic	0	0.02644100990288	0.0561506681739889
4	115246239	115255926	1	loss	A	-1	germline	1	0.00376176370642423	0.0086644822732308
4	115627261	115633719	2	neutral	AA	100	somatic	0	0.237608505248458	0.670279955262709
4	127335615	127387279	2	neutral	AA	26.1588	somatic	0	0.333574544483843	0.770256530563669
4	137167920	137180836	1	loss	A	-1	germline	1	0.00155390378820421	0.00156834347742352
4	142053397	142137351	2	neutral	AA	31.0031	somatic	0	0.582281971074876	0.527418285320852
4	146283387	146341509	2	neutral	AA	5.22528	germline	1	0.308188197669921	0.465652651912299
4	162819096	163041897	2	neutral	AA	19.6489	somatic	0	0.877315106907992	0.756345565774866
4	172502867	172512554	0	loss	-	-1	germline	1	0.0143075006000659	0.0366351866765704
4	173161583	173368239	2	neutral	AA	66.3918	somatic	0	0.720665084142613	0.436933492610928
4	176458392	176519743	2	neutral	AA	77.467	somatic	0	0.243500433799853	0.391328287358847
4	186429544	186432773	4	gain	AABB	54.2685	germline	1	0.0832708436180359	0.270047730076691
4	186436002	186439231	3	gain	AAB	6.04591	germline	1	0.0833349288299219	0.270159014380676
5	12809443	12822359	1	loss	A	-1	germline	1	0.017321648506998	0.0458338556593267
5	23901058	23907516	1	loss	A	-1	somatic	0	0.021813345663629	0.0571866092423104
5	45005802	45015489	1	loss	A	-1	somatic	0	0.00564545760294479	0.00937670346978536
5	45370679	45377137	1	loss	A	-1	somatic	0	0.0177142514298844	0.0469771599331629
5	52910394	52913623	1	loss	A	-1	somatic	0	0.0834600495164743	0.270376183781283
5	84651464	84661151	1	loss	A	-1	germline	1	0.020567486384839	0.0560027603022811
5	86918222	86921451	0	loss	-	-1	somatic	0	0.0832668890493276	0.270040861771874
5	116172962	116202023	1	loss	A	-1	germline	1	1.01498717608123e-06	2.01302042590612e-07
5	135782679	135785908	1	loss	A	-1	germline	1	0.0832755893013103	0.270055972210787
5	137516652	137526339	1	loss	A	-1	somatic	0	0.0124794758855931	0.0240822519650404
5	140842522	140858667	1	loss	A	-1	germline	1	0.000981910240008866	0.00156566828426019
5	141217086	141223544	2	neutral	AA	100	somatic	0	0.350386605536666	0.831049970493318
5	143609775	143616233	2	neutral	AA	55.0709	somatic	0	0.714072261840254	0.707575557477292
5	144620452	144623681	2	neutral	AA	100	somatic	0	0.852304602553257	0.919040616082317
5	145317916	145543946	2	neutral	AA	36.4154	somatic	0	0.257612307238678	0.389197136535272
5	145740915	145744144	1	loss	A	-1	somatic	0	0.123699189858009	0.334425286238668
5	146522333	146583684	2	neutral	AA	27.284	germline	1	0.488897300844787	0.598650453588097
5	148462962	148469420	2	neutral	AA	100	somatic	0	0.594775875902118	0.467795037983133
5	149144281	149150739	2	neutral	AA	100	somatic	0	0.47615295466492	0.535109226565878
5	149289586	149296044	2	neutral	AA	54.5678	germline	1	0.359018570371359	0.321209608352477
5	149460723	149463952	2	neutral	AA	100	somatic	0	0.299848090635502	0.545335180211328
5	150187248	150190477	2	neutral	AA	100	somatic	0	0.978852567499197	0.958839829660076
5	151320627	151323856	2	neutral	AA	100	somatic	0	0.324961704169972	0.57014262219705
5	158773159	158779617	2	neutral	AA	27.2937	somatic	0	0.571603657111169	0.787239486267678
5	159603012	159644989	2	neutral	AA	93.2881	somatic	0	0.117230637819103	0.067120427570705
5	165337716	165340945	2	neutral	AA	100	germline	1	0.200812471107321	0.436508040272316
5	165405525	165547601	2	neutral	AA	100	somatic	0	0.648342926083779	0.303646808512939
5	176781292	176784521	2	neutral	AA	100	somatic	0	0.53169242055028	0.74338603726297
5	178583074	178586303	5	gain	AAABB	4.40815	germline	1	0.0832692617722961	0.270044982739463
5	180623802	180627031	2	neutral	AA	100	somatic	0	0.109982012363261	0.313733044638669
5	180949931	181001595	1	loss	A	-1	germline	1	8.28111621211359e-11	6.78457290348433e-13
5	181043572	181046801	3	gain	AAB	100	germline	1	0.083280335203672	0.270064214528514
6	255091	258320	3	gain	AAB	100	germline	1	0.0832858723666719	0.270073830797942
6	258320	381022	4	gain	AABB	0.544569	germline	1	2.70290085667532e-25	0
6	1895423	1927713	2	neutral	AA	7.45568	somatic	0	0.00669616455748462	0.014571070574525
6	19041413	19047871	1	loss	A	-1	germline	1	0.017523025439343	0.0425758627555951
6	20959439	20962668	4	gain	-	-1	germline	1	0.0832740073825427	0.270053224812354
6	24708308	24750285	2	neutral	AA	22.3095	somatic	0	0.487205279016097	0.39270171490693
6	28192399	28224689	2	neutral	AA	54.5678	somatic	0	0.230060606759947	0.42810423901509
6	32486969	32561236	0	loss	-	-1	germline	1	9.22052003266681e-09	5.588229878839e-10
6	32561236	32574152	1	loss	A	-1	germline	1	0.0199088373821279	0.0529188648164269
6	32574152	32577381	3	gain	AAB	0.855291	somatic	0	0.0833151451826372	0.270124663802674
6	32577381	32667793	1	loss	A	-1	germline	1	1.55531835746485e-06	1.21226554028464e-06
6	33539623	33549310	2	neutral	AA	57.262	somatic	0	0.9692113176993	0.934322252146322
6	35657847	35661076	0	loss	-	-1	germline	1	0.0832668890493276	0.270040861771874
6	35787007	35799923	4	gain	AAAB	16.9723	germline	1	0.000532280123275178	0.00067121440518858
6	51864198	51883572	2	neutral	AA	100	somatic	0	0.245913683982998	0.533055745916261
6	54063147	54066376	0	loss	-	-1	germline	1	0.0832668890493276	0.270040861771874
6	60230537	60236995	3	gain	-	-1	germline	1	0.0143124931682632	0.0366427040308884
6	60236995	60240224	5	gain	-	-1	germline	1	0.0832692617722961	0.270044982739463
6	66297828	66339805	1	loss	A	-1	germline	1	4.26684067658811e-09	1.65071845081854e-10
6	67589428	67676611	2	neutral	AA	55.5389	somatic	0	0.210766201403698	0.368190526752358
6	71677342	72090654	2	neutral	AA	100	somatic	0	0.598466462648165	0.716619314666946
6	73046438	73133621	2	neutral	AA	36.3809	somatic	0	0.0802877945079899	0.19882867353965
6	73882749	73892436	1	loss	A	-1	germline	1	0.00471610456677021	0.00786054499821909
6	74825617	74870823	2	neutral	AA	36.4445	somatic	0	0.0791899928187868	0.0733975859282366
6	78258044	78325853	1	loss	A	-1	germline	1	5.98007670886213e-14	1.11022302462516e-16
6	78810203	78813432	0	loss	-	-1	germline	1	0.0832700526921232	0.270046356405524
6	81332052	81483815	2	neutral	AA	26.7352	somatic	0	0.332023058621374	0.271958965086865
6	82249088	82255546	2	neutral	AA	100	somatic	0	0.410709614760801	0.863591147227949
6	82665629	82691461	2	neutral	AA	100	somatic	0	0.385838754471516	0.584415773561759
6	83227475	83408299	2	neutral	AA	27.5521	somatic	0	0.901375288302347	0.861599027635541
6	86072224	86110972	2	neutral	AA	15.8047	somatic	0	0.480898450832842	0.613135984978184
6	96447001	96585848	2	neutral	AA	100	somatic	0	0.139243299497165	0.342775768788388
6	97102488	97176755	2	neutral	AA	100	somatic	0	0.490181382790943	0.375951691651953
6	107687150	107709753	2	neutral	AA	92.4402	somatic	0	0.329853569864288	0.233193414457945
6	114871675	114884591	2	neutral	AA	100	somatic	0	0.428794698444408	0.768720681323754
6	118643147	118646376	5	gain	AAAAA	12.1262	germline	1	0.0832692617722961	0.270044982739463
6	125456337	125488627	2	neutral	AA	36.4226	somatic	0	0.699485869391651	0.498793832194602
6	134268278	134274736	1	loss	A	-1	somatic	0	0.020652914722417	0.0537804764740971
6	136367128	136644822	2	neutral	AA	40.4628	somatic	0	0.545260760957126	0.567939575181479
6	136922516	136954806	2	neutral	AA	54.5678	somatic	0	0.998507580627553	0.980497910246537
6	139140839	139173129	2	neutral	AA	100	germline	1	0.801609943589137	0.84058490563369
6	143874553	143881011	1	loss	A	-1	somatic	0	0.0273125763273139	0.0569128773217509
6	151323856	151472390	2	neutral	AA	36.5435	somatic	0	0.777006566612753	0.871096000408634
6	153077203	153090119	1	loss	A	-1	germline	1	0.00184842087450282	0.00160167862384375
6	153122409	153283859	2	neutral	AA	100	somatic	0	0.289269796611794	0.204658693494953
6	153322607	153335523	1	loss	A	-1	germline	1	0.00100658265771358	0.00132172674402198
6	153419477	153432393	3	gain	AAA	19.8216	germline	1	0.000535736252307002	0.00067931639562635
6	154288078	154317139	2	neutral	AA	18.2836	somatic	0	0.13631232732025	0.539539624735721
6	156399844	156406302	2	neutral	AA	100	somatic	0	0.089090181121561	0.204107115789055
6	157313651	157316880	5	gain	AAABB	4.93973	germline	1	0.0832700526921232	0.270046356405527
6	158760243	158931380	2	neutral	AA	12.1831	somatic	0	0.067145579909782	0.134115015329385
6	159289799	159302715	2	neutral	AA	100	somatic	0	0.285851199797863	0.585998093051217
6	160161629	160181003	2	neutral	AA	54.5679	somatic	0	0.564406400307125	0.734181085685034
6	167807901	168030702	2	neutral	AA	8.65786	somatic	0	0.319904492128585	0.698605181901436
6	170145697	170148926	3	gain	AAA	16.6238	germline	1	0.0832819172198132	0.270066962008561
6	170148926	170174758	2	neutral	AA	16.4494	germline	1	0.479819381515207	0.866476147884965
7	9761267	9764496	0	loss	-	-1	somatic	0	0.0832668890493276	0.270040861771874
7	34023973	34033660	1	loss	A	-1	germline	1	0.00511581782421488	0.00926611957444745
7	39506815	39513273	1	loss	A	-1	somatic	0	0.0239111190881464	0.0558145554658943
7	45441717	45448175	1	loss	A	-1	somatic	0	0.0250435978336371	0.0552897212958038
7	57408391	57418078	1	loss	A	-1	somatic	0	0.00579105712115399	0.00958531311643052
7	57485887	57498803	3	gain	-	-1	germline	1	0.000532438366904288	0.000671407236383814
7	58060649	58067107	3	gain	-	-1	somatic	0	0.0143118690132074	0.036642328131122
7	61044245	61057161	3	gain	-	-1	somatic	0	0.000532403197865446	0.000671324588084388
7	61095909	62300326	2	neutral	AA	1.35257	somatic	0	5.18436886356642e-08	5.68732190231458e-06
7	62300326	62345532	3	gain	AAB	0.589551	germline	1	9.36452192042053e-06	2.26597406809415e-05
7	62345532	62358448	2	neutral	AA	1.19072	somatic	0	0.00164322145314434	0.00853338071888876
7	62358448	62403654	2	neutral	AA	-1	somatic	0	NA	NA
7	62403654	62406883	5	gain	-	-1	germline	1	0.0832708436180359	0.270047730076691
7	62406883	62439173	2	neutral	AA	-1	somatic	0	NA	NA
7	62439173	62455318	3	gain	AAB	2.68411	somatic	0	0.000108966083649077	9.32802374784547e-05
7	62455318	62519898	2	neutral	AA	-1	somatic	0	NA	NA
7	62519898	62542501	2	neutral	AA	5.21987	germline	1	0.0181498815090552	0.0422517931566023
7	62561875	62613539	2	neutral	AA	3.53886	germline	1	1.03229361086298e-05	9.627367259879e-05
7	63017164	63143095	2	neutral	AA	100	somatic	0	0.511096009054222	0.477386445390853
7	65225800	65229029	0	loss	-	-1	germline	1	0.0832684708585545	0.270043609078498
7	65487349	65490578	4	gain	AAAB	6.14419	somatic	0	0.0832787532118746	0.27006146706887
7	66055653	66065340	2	neutral	AA	56.9581	somatic	0	0.563260461755108	0.740198485378672
7	67737962	67892954	2	neutral	AA	11.4991	germline	1	0.0599310367849999	0.204387446358372
7	76352934	76381995	2	neutral	AA	54.5678	somatic	0	0.281634163977314	0.35621733932602
7	79081439	79097584	2	neutral	AA	100	germline	1	0.839686949173558	0.93218773897603
7	79623911	79627140	1	loss	A	-1	somatic	0	0.0833483838834986	0.270182374594767
7	85403821	85478088	2	neutral	AA	37.6388	germline	1	0.225424431468194	0.261711480773864
7	100728655	100738342	1	loss	A	-1	somatic	0	0.00518506636045057	0.00950393784468628
7	100948227	100954685	3	gain	AAB	0.637192	germline	1	0.0143189858043714	0.0366626315472066
7	100954685	100957914	5	gain	-	-1	germline	1	0.0832708436180359	0.270047730076691
7	100957914	100961143	12	gain	AAAAAAABBBBB	12.125	germline	1	0.0832653072644424	0.270038114485656
7	100961143	100970830	4	gain	AABB	0.758635	germline	1	0.00270139918464195	0.00495998426094091
7	100970830	100977288	3	gain	AAB	1.38321	germline	1	0.0143592480900075	0.0367522343088914
7	101235608	101284043	2	neutral	AA	5.61463	somatic	0	0.532850634440096	0.408167433119184
7	110541586	110548044	1	loss	A	-1	somatic	0	0.0269493029506737	0.0543278771002765
7	123657784	123903188	2	neutral	AA	35.1589	somatic	0	0.776950545753157	0.611786880084186
7	126408892	126412121	0	loss	-	-1	somatic	0	0.0832692617722961	0.270044982739461
7	138630657	138637115	2	neutral	AA	38.7392	somatic	0	0.933833879252726	0.982219881294331
7	146664409	146703157	2	neutral	AA	33.5295	germline	1	0.971889929759684	0.995065728940653
7	147597590	147610506	2	neutral	AA	100	somatic	0	0.126832579217469	0.218220555074652
7	150907315	150910544	3	gain	AAA	58.3474	somatic	0	0.083280335203672	0.270064214528514
7	152360365	152399113	2	neutral	AA	100	germline	1	0.595421231135245	0.666870205740667
7	152399113	152402342	3	gain	AAB	14.9475	germline	1	0.0832858723666719	0.270073830797942
7	152402342	152408800	11	gain	AAAAAAAAABB	3.22479	germline	1	0.014306127913165	0.036631428505439
7	152415258	152418487	2	neutral	AA	100	germline	1	0.124744142732905	0.335968334440913
7	155282610	155334274	2	neutral	AA	12.3728	somatic	0	0.850362864359791	0.895497596315159
7	155334274	155337503	3	gain	AAB	4.9965	somatic	0	0.0832811262086996	0.270065588265987
7	158149962	158153191	4	gain	AABB	11.7211	germline	1	0.0832740073825427	0.270053224812354
7	158592335	158595564	5	gain	AAABB	24.9498	germline	1	0.0832708436180359	0.270047730076691
8	4265509	4268738	1	loss	A	-1	somatic	0	0.0835908758906767	0.270603110556722
8	5737933	5747620	1	loss	A	-1	germline	1	0.00372800683948806	0.00695070301786638
8	6112497	6115726	0	loss	-	-1	somatic	0	0.0832668890493276	0.270040861771874
8	16387175	16496961	2	neutral	AA	93.0966	germline	1	0.391786442516392	0.66514669584067
8	18992978	19009123	1	loss	A	-1	germline	1	0.00027509021652888	0.000268667567277614
8	25208803	25212032	0	loss	-	-1	germline	1	0.0832653072644424	0.270038114485653
8	25212032	25215261	1	loss	A	-1	germline	1	0.121955292007629	0.331848800578625
8	25722214	25728672	3	gain	AAB	22.8463	germline	1	0.0143123683353311	0.0366427040308884
8	38073139	38076368	1	loss	A	-1	somatic	0	0.0833903432868187	0.270255212960088
8	42332190	42335419	0	loss	-	-1	germline	1	0.0832668890493276	0.270040861771874
8	43236310	43239539	4	gain	AAAB	15.8848	germline	1	0.0832787532118746	0.27006146706887
8	43239539	43242768	7	gain	AAAAABB	7.64365	germline	1	0.0832668890493276	0.270040861771877
8	49187357	49358494	2	neutral	AA	73.3437	somatic	0	0.729277561809291	0.890461846805759
8	50117309	50126996	1	loss	A	-1	somatic	0	0.00684803029476968	0.0094181204685061
8	86117430	86646986	2	neutral	AA	12.8004	somatic	0	0.768539547268668	0.716782648564344
8	88335753	88368043	2	neutral	AA	27.2839	somatic	0	0.744882691673832	0.231414468446496
8	89482048	89491735	2	neutral	AA	100	somatic	0	0.989530899814638	0.645826977496951
8	93841198	93873488	3	gain	AAB	70.8621	somatic	0	4.34835682989977e-08	4.15222789484915e-09
8	95920674	95949735	2	neutral	AA	100	somatic	0	0.585418372392235	0.473056935534947
8	111281027	111284256	1	loss	A	-1	germline	1	0.0832740073825427	0.270053224812352
8	111500599	111539347	2	neutral	AA	100	somatic	0	0.296603539141821	0.60611828176621
8	119140413	119150100	1	loss	A	-1	somatic	0	0.00636667586207814	0.00967994883706869
8	144123186	144126415	4	gain	AAAA	17.4306	germline	1	0.0832724254881181	0.270050477434321
8	144126415	144132873	2	neutral	AA	100	somatic	0	0.661749890034164	0.87297424935151
8	144145789	144236201	2	neutral	AA	25.3219	somatic	0	0.252688405413583	0.365436622975725
9	6700175	6713091	1	loss	A	-1	germline	1	0.00116699350833112	0.00155193402266229
9	10739654	10755799	2	neutral	AA	100	somatic	0	0.461178113740207	0.278480723285037
9	11992506	12131353	1	loss	A	-1	germline	1	2.33642538107738e-25	0
9	22496443	22502901	1	loss	A	-1	germline	1	0.0180391434011046	0.0473456998553899
9	26774868	27113913	2	neutral	AA	78.9477	somatic	0	0.0444465538343925	0.0383857078611642
9	40924346	40927575	7	gain	AAAAABB	13.9672	germline	1	0.0832668890493276	0.270040861771877
9	40927575	40930804	5	gain	AAAAA	4.47089	germline	1	0.0832692617722961	0.270044982739463
9	81325594	81341739	2	neutral	AA	54.5678	somatic	0	0.970149357551584	0.975545599868723
9	82565530	82694690	2	neutral	AA	100	somatic	0	0.0810149510841063	0.052612191528706
9	101732874	101761935	2	neutral	AA	100	somatic	0	0.664965873765111	0.539493862716568
9	102310865	102323781	2	neutral	AA	100	somatic	0	0.405856388402251	0.812570853528138
9	111949430	111968804	2	neutral	AA	27.6125	somatic	0	0.289037855257584	0.293449459992945
9	112543566	112553253	2	neutral	AA	37.1315	somatic	0	0.0632190261253153	0.0670241983283518
9	118155568	118165255	2	neutral	AA	100	somatic	0	0.261640381557104	0.238045963135281
9	118633460	118665750	2	neutral	AA	100	somatic	0	0.676125742018367	0.512778335301532
9	124484408	124710438	2	neutral	AA	100	somatic	0	0.208910963027093	0.325031711360755
9	125356238	125362696	1	loss	A	-1	germline	1	0.0275339986252501	0.054291376052401
9	129421549	129444152	2	neutral	AA	0.255356	germline	1	0.0841971741415959	0.178076510353068
9	129573312	129576541	2	neutral	AA	100	somatic	0	0.128870913809227	0.34197912473616
9	129576541	130835851	1	loss	A	-1	somatic	0	7.97922295033752e-208	0
9	137326141	137329370	4	gain	AAAA	5.8315	germline	1	0.0832787532118746	0.27006146706887
9	137329370	137355202	2	neutral	AA	12.5185	somatic	0	0.552114679327954	0.343102047991683
9	137355202	137358431	3	gain	AAB	17.3525	somatic	0	0.083280335203672	0.270064214528514
9	137358431	137361660	0	loss	-	-1	germline	1	0.0832668890493276	0.270040861771874
9	137464988	137474675	2	neutral	AA	54.5678	somatic	0	0.217138078805648	0.530126676574746
9	137913819	137975170	2	neutral	AA	100	somatic	0	0.0130688394698319	0.0397656289627416
10	38483222	38489680	4	gain	-	-1	germline	1	0.014312867672822	0.0366475910348886
10	38489680	38525199	3	gain	-	-1	germline	1	9.7344529316594e-09	7.67236496557189e-10
10	38525199	38528428	17	gain	-	-1	germline	1	0.0832653072644424	0.270038114485656
10	38573634	38576863	3	gain	-	-1	germline	1	0.0833990539858523	0.270270332152295
10	38576863	38583321	4	gain	-	-1	germline	1	0.0143091230161954	0.0366378175970811
10	38583321	38835183	3	gain	-	-1	germline	1	1.18925061988223e-12	4.51960691094655e-12
10	39403487	39406716	4	gain	-	-1	germline	1	0.0832724254881181	0.270050477434321
10	39406716	39409945	5	gain	-	-1	germline	1	0.0832692617722961	0.270044982739463
10	39409945	39413174	3	gain	-	-1	germline	1	0.0832819172198132	0.270066962008561
10	39558479	39561708	0	loss	-	-1	germline	1	0.0832660981538423	0.270039488126213
10	41857527	41915649	43	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBB	56.0466	germline	1	2.20924610403491e-05	1.22895593719363e-05
10	42299900	42322503	3	gain	AAB	11.4172	germline	1	4.6335290999915e-06	1.68701888592082e-06
10	43426821	43436508	2	neutral	AA	100	somatic	0	0.0727161695160352	0.188088825194574
10	46513745	46558951	4	gain	AABB	0.40187	germline	1	4.24464139655339e-10	1.02342578855996e-11
10	49794409	49804096	1	loss	A	-1	germline	1	0.0062735542748736	0.00947497817919973
10	59897950	59965759	2	neutral	AA	100	somatic	0	0.867565560301154	0.958894330613048
10	62855714	62875088	2	neutral	AA	100	somatic	0	0.763218925575183	0.884635901436872
10	63753376	63863162	2	neutral	AA	54.5681	somatic	0	0.818707537908495	0.497134285119942
10	65545471	65555158	1	loss	A	-1	somatic	0	0.00618882337308219	0.00935108889014924
10	68345014	68386991	2	neutral	AA	54.5681	germline	1	0.161286102590812	0.185040747770221
10	69520370	69530057	1	loss	A	-1	germline	1	0.00518903770980657	0.00939896333097678
10	71347984	71402877	2	neutral	AA	54.5873	germline	1	0.0470563417386697	0.0346001036650307
10	74241168	74596358	2	neutral	AA	21.9295	somatic	0	0.534213895855203	0.425188861237023
10	76495010	76501468	1	loss	A	-1	somatic	0	0.0254638892347463	0.0556522810624365
10	82484805	82513866	1	loss	A	-1	germline	1	8.59605158691899e-07	1.56084022817637e-07
10	91161128	91222479	2	neutral	AA	54.5678	somatic	0	0.150274350620424	0.0454196675836783
10	91755264	91764951	2	neutral	AA	36.3991	somatic	0	0.524773673392698	0.897319238392613
10	94913226	94919684	2	neutral	AA	55.1746	somatic	0	0.380520208408569	0.430980489014101
10	98668553	98797713	2	neutral	AA	100	somatic	0	0.390494355183895	0.637506984270611
10	101761935	102088064	2	neutral	AA	43.0771	somatic	0	0.378554960440979	0.18584604543384
10	106269619	106272848	1	loss	A	-1	germline	1	0.0832740073825427	0.270053224812352
10	109256444	109469558	2	neutral	AA	38.317	somatic	0	0.0793920432191307	0.243383178616235
10	116696060	116705747	2	neutral	AA	100	somatic	0	0.819443442963401	0.891951519635631
10	119288947	119592473	2	neutral	AA	66.2424	somatic	0	0.0680549618465766	0.122549208274584
10	119608618	119731320	2	neutral	AA	45.2493	somatic	0	0.355041748183277	0.522851795833506
10	121455606	121465293	2	neutral	AA	100	somatic	0	0.398224864209445	0.480069409329593
10	128462536	128465765	6	gain	AAABBB	8.58391	germline	1	0.0832684708585545	0.270043609078501
10	132363168	132366397	4	gain	AABB	33.0375	germline	1	0.0832708436180359	0.270047730076691
10	132576282	132631175	2	neutral	AA	19.3853	somatic	0	0.196201772113567	0.507493576635379
10	132750648	132792625	2	neutral	AA	22.8288	somatic	0	0.981521199950758	0.933682822686507
10	133109067	133112296	5	gain	AAABB	5.21242	germline	1	0.0832692617722961	0.270044982739463
10	133564356	133619249	2	neutral	AA	36.6957	somatic	0	9.14440063453696e-06	1.23341561911738e-05
11	2457269	2502475	2	neutral	AA	54.569	somatic	0	0.391229854076664	0.493720512702863
11	3216084	3222542	1	loss	A	-1	somatic	0	0.0257023824393162	0.0561653685145599
11	4946828	4953286	1	loss	A	-1	somatic	0	0.0237106836950613	0.0513718083325286
11	5324621	5366598	2	neutral	AA	62.238	somatic	0	0.928970916768227	0.937556145764511
11	5615231	5618460	1	loss	A	-1	somatic	0	0.0834053895025806	0.270281328316141
11	6868083	6877770	2	neutral	AA	100	somatic	0	0.834548878082552	0.929667388828358
11	18140522	18224476	2	neutral	AA	100	somatic	0	0.315427875586383	0.474865321396063
11	27029959	27036417	1	loss	A	-1	somatic	0	0.0229506163604283	0.055058601301041
11	50175431	50178660	1	loss	A	-1	somatic	0	0.0835551795112383	0.27054120766076
11	50181889	50240011	2	neutral	AA	54.5686	somatic	0	0.0290993198478703	0.0172104536048699
11	54757382	54776756	1	loss	A	-1	germline	1	0.000294480361235908	0.000245759509049925
11	54983412	54993099	1	loss	A	99.0922	somatic	0	0.0307991512464576	0.0597399559305501
11	55183610	55215900	1	loss	A	-1	germline	1	1.03306897716814e-05	1.22631939836193e-06
11	64147314	64383031	2	neutral	AA	7.77171	somatic	0	0.986165779841266	0.883492220087097
11	70369597	70372826	3	gain	AAB	93.8428	somatic	0	0.0832874544680183	0.270076578349399
11	72478134	72533027	2	neutral	AA	19.0075	somatic	0	0.647350360379965	0.541621838129631
11	73249865	73256323	1	loss	A	-1	somatic	0	0.0293644660547781	0.0587860125344116
11	74273458	74312206	2	neutral	AA	100	somatic	0	0.388233240070207	0.139822855015323
11	74312206	74315435	1	loss	A	-1	somatic	0	0.0838013384799232	0.270967859420518
11	74315435	74476885	2	neutral	AA	44.8296	somatic	0	0.678451411431141	0.320048054698712
11	82145760	82152218	1	loss	A	-1	germline	1	0.0233596661628217	0.0513345067569954
11	84205862	84244610	2	neutral	AA	33.9722	somatic	0	0.0398189456779255	0.0378074388685566
11	86956970	87002176	2	neutral	AA	54.5678	somatic	0	0.681629501290878	0.584899690147124
11	87153939	87283099	2	neutral	AA	100	germline	1	0.982525715891052	0.532806137808244
11	93008116	93566733	2	neutral	AA	20.7474	somatic	0	0.000216356890193835	0.00252756938864973
11	101380913	101432577	2	neutral	AA	54.5679	somatic	0	0.752598184216023	0.900816552117597
11	102624078	102669284	2	neutral	AA	14.2945	somatic	0	0.79067414131913	0.503552138045746
11	104264410	104296700	2	neutral	AA	58.8274	somatic	0	0.0814696877899539	0.305349566802565
11	104396799	104403257	0	loss	-	-1	germline	1	0.0143066270585957	0.0366329317334116
11	105717460	105782040	2	neutral	AA	54.5681	somatic	0	0.763145727019188	0.634744645916325
11	119395504	119447168	2	neutral	AA	100	somatic	0	0.982287646139197	0.966282651348976
11	127235516	127309783	2	neutral	AA	27.2175	somatic	0	0.415251950581254	0.446345160508202
11	131052194	131068339	2	neutral	AA	54.5678	somatic	0	0.231358438058171	0.281845631508257
11	133092922	133138128	2	neutral	AA	100	somatic	0	0.541255066783096	0.458377559427723
12	2253842	2257071	10	gain	-	-1	germline	1	0.0832653072644424	0.270038114485656
12	18095316	18098545	1	loss	A	-1	somatic	0	0.0833428433542265	0.270172755504545
12	30323539	30329997	1	loss	A	-1	somatic	0	0.0253276759489307	0.0534096709143695
12	37259431	37262660	3	gain	-	-1	somatic	0	0.0832834992602984	0.270069709509011
12	37721178	37734094	3	gain	AAB	1.74696	somatic	0	0.00055121532714973	0.000701845885950014
12	39710242	39716700	1	loss	A	-1	somatic	0	0.0212951442225097	0.0577530819757831
12	58251160	58438442	2	neutral	AA	36.3858	somatic	0	0.253092534499619	0.466273767829752
12	70479383	70485841	1	loss	A	-1	somatic	0	0.027570591577596	0.0564885197929424
12	71574014	71645052	2	neutral	AA	54.5678	somatic	0	0.0117541797100992	0.0428658068252742
12	77957747	77964205	1	loss	A	-1	somatic	0	0.0293573426887228	0.0563715209954377
12	79746613	79759529	2	neutral	AA	100	somatic	0	0.0482104500740902	0.11827299066282
12	79762758	79769216	3	gain	AAA	56.909	somatic	0	0.0143141160837827	0.0366475910348886
12	80350436	80421474	2	neutral	AA	100	germline	1	0.0487747317408767	0.0439500111369692
12	88539180	88558554	2	neutral	AA	100	somatic	0	0.642986696025489	0.802971584217514
12	90089100	90098787	1	loss	A	-1	somatic	0	0.00529611316982884	0.00962644667550538
12	94751776	94777608	2	neutral	AA	27.2851	germline	1	0.727424370238213	0.445726671628162
12	95420179	95439553	2	neutral	AA	58.0998	somatic	0	0.132656095666384	0.153221816346147
12	96149933	96156391	2	neutral	AA	54.5678	somatic	0	0.695583128250543	0.899403889611416
12	100399297	100444503	2	neutral	AA	54.5678	somatic	0	0.585708569201989	0.75367465047211
12	117203013	117206242	0	loss	-	-1	germline	1	0.0832668890493276	0.270040861771874
12	119550496	119556954	1	loss	A	-1	somatic	0	0.0227045942078612	0.0570435318339558
12	123218640	123276762	2	neutral	AA	100	somatic	0	0.752839932669831	0.851753278777483
12	123780486	123809547	2	neutral	AA	36.3885	somatic	0	0.718631233325775	0.513583570142793
12	124539301	124542530	1	loss	A	-1	somatic	0	0.0969152666597629	0.292991928280162
12	128636902	128711169	2	neutral	AA	11.0057	somatic	0	0.00784306366338786	0.00543307082256239
13	18234163	18237392	1	loss	A	-1	germline	1	0.090807285182005	0.282899024415577
13	21062767	21078912	2	neutral	AA	54.8373	germline	1	0.924839765488576	0.90296117936179
13	22018551	22025009	1	loss	A	-1	germline	1	0.0211415872215797	0.0483614770446297
13	22641748	22667580	2	neutral	AA	54.5786	somatic	0	0.566672702818919	0.784090102565036
13	23290777	23303693	2	neutral	AA	100	somatic	0	0.60136709415413	0.929119467193551
13	26471342	26477800	1	loss	A	-1	germline	1	0.0206388846789964	0.0561789828914335
13	28337704	28340933	2	neutral	AA	100	somatic	0	0.241082127098375	0.483101702029281
13	29542121	29564724	2	neutral	AA	34.8853	somatic	0	0.958770250144621	0.990257878968583
13	33216723	33219952	2	neutral	AA	100	somatic	0	0.420739058481181	0.656807544079659
13	33562226	33571913	1	loss	A	-1	germline	1	0.00536285175984918	0.009413327867976
13	34104698	34107927	2	neutral	AA	100	somatic	0	0.268376799492303	0.512783522364923
13	37498377	37511293	1	loss	A	-1	germline	1	0.000683077779001609	0.000971279702238981
13	38483222	38486451	1	loss	A	-1	germline	1	0.0931736296820533	0.286842693652975
13	39313075	39358281	2	neutral	AA	100	somatic	0	0.615791462368708	0.857688233945176
13	39358281	39361510	1	loss	A	-1	somatic	0	0.119089646992334	0.327582430047532
13	39755448	39758677	2	neutral	AA	100	somatic	0	0.941884800296624	0.948877982962782
13	40917888	40953407	2	neutral	AA	54.5679	somatic	0	0.174401152742872	0.217363737783055
13	42170740	42254694	2	neutral	AA	54.5678	somatic	0	0.775102762379667	0.955619320384874
13	45264122	45280267	2	neutral	AA	54.5678	somatic	0	0.561022625868889	0.202410419109059
13	48225115	48228344	2	neutral	AA	54.5678	somatic	0	0.956373268571884	0.952946020828703
13	48958098	48964556	1	loss	A	-1	germline	1	0.0376594159985965	0.0806598893134857
13	49274540	49284227	2	neutral	AA	37.5035	somatic	0	0.297743719885972	0.387875013843145
13	50498331	50501560	0	loss	-	-1	germline	1	0.0832668890493276	0.270040861771874
13	52671448	52674677	2	neutral	AA	100	somatic	0	0.185181185384716	0.417372654841875
13	55910135	55926280	2	neutral	AA	93.3801	somatic	0	0.340111220072907	0.647492117206242
13	61958052	61964510	1	loss	A	100	somatic	0	0.0418068932905025	0.0896298319576599
13	63026851	63036538	3	gain	AAB	2.26593	germline	1	0.0146601394133147	0.0376534610447725
13	63059141	63062370	3	gain	AAB	1.79171	germline	1	0.0833175190194201	0.270128785703704
13	63062370	63068828	3	gain	AAB	0.558306	germline	1	0.0143147403252825	0.0366509746793969
13	63520888	63524117	2	neutral	AA	100	somatic	0	0.757027002958096	0.878111919644507
13	64767282	64770511	1	loss	A	-1	somatic	0	0.0832834992602984	0.270069709509009
13	70030552	70037010	2	neutral	AA	100	germline	1	0.215951430728858	0.234186942570885
13	70075758	70078987	2	neutral	AA	100	somatic	0	0.785947921533895	0.89155253051397
13	75112998	75171120	2	neutral	AA	54.5693	somatic	0	0.0482381516403897	0.0607045079156122
13	75477875	75503707	2	neutral	AA	54.5678	somatic	0	0.505153028822462	0.836146008649566
13	76314186	76330331	2	neutral	AA	36.384	somatic	0	0.304211694054828	0.638227011272883
13	88083891	88116181	2	neutral	AA	100	somatic	0	0.554113320489036	0.639681884329002
13	93108215	93130818	2	neutral	AA	100	somatic	0	0.714123114810542	0.604098186503955
13	95946506	95949735	2	neutral	AA	100	somatic	0	0.727348088515555	0.86344844986023
13	97451220	97457678	1	loss	A	-1	somatic	0	0.0253214060154851	0.0561430470777108
13	100628556	100722197	2	neutral	AA	100	somatic	0	0.0399724659866561	0.113117712072613
13	101603714	101606943	1	loss	A	-1	somatic	0	0.123589764455284	0.33426406189532
13	102533666	102565956	2	neutral	AA	36.573	germline	1	0.971271376205584	0.906125019293372
13	106485962	106492420	2	neutral	AA	54.5785	somatic	0	0.313048733857539	0.696489013427927
13	107060724	107063953	2	neutral	AA	100	somatic	0	0.922394107798938	0.943071949913112
13	107758188	107861516	2	neutral	AA	36.3786	somatic	0	0.0323155967285266	0.0736836048565015
13	108985208	108994895	2	neutral	AA	100	germline	1	0.304380239264043	0.169771690520934
13	109020727	109023956	1	loss	A	-1	somatic	0	0.117462457932422	0.325140491334127
13	109850580	109853809	2	neutral	AA	100	germline	1	0.50900766549963	0.726771348793458
13	112750222	112756680	2	neutral	AA	54.5678	somatic	0	0.762531763746765	0.807775480784002
13	112963336	113034374	2	neutral	AA	16.2686	germline	1	0.272025820860536	0.560671192438875
13	113835166	113848082	2	neutral	AA	32.3265	somatic	0	0.0111075527016583	0.0347661694704521
13	114154837	114158066	1	loss	A	-1	somatic	0	0.0845049135711882	0.272184435543954
14	0	16093336	3	gain	AAB	-1	somatic	0	NA	NA
14	16093336	16096565	3	gain	-	-1	germline	1	0.0832819172198132	0.270066962008561
14	16096565	18682994	3	gain	AAB	-1	somatic	0	NA	NA
14	18692681	19748564	3	gain	AAB	-1	somatic	0	NA	NA
14	19748564	19955220	3	gain	AAB	0.450859	germline	1	1.17421382943498e-22	0
14	20236143	20239372	1	loss	A	-1	somatic	0	0.0860465368703624	0.274835373493115
14	23587845	23597532	2	neutral	AA	100	somatic	0	0.762532001946149	0.885271576292902
14	35134749	35147665	1	loss	A	-1	germline	1	0.00149674948379849	0.00166556629535974
14	35945228	35948457	3	gain	AAB	8.16961	germline	1	0.0832914098278939	0.270083447317306
14	37818048	37827735	2	neutral	AA	100	germline	1	0.801179425676466	0.858620965497307
14	54150330	54163246	1	loss	A	-1	germline	1	0.00127717312229335	0.00155458738289649
14	60976436	61076535	2	neutral	AA	22.221	somatic	0	0.116636341238509	0.320731480502011
14	65419540	65429227	2	neutral	AA	46.6865	somatic	0	0.97330964527394	0.932807039314278
14	67999511	68054404	2	neutral	AA	92.9266	somatic	0	0.0635528007675667	0.0711818770716627
14	68396678	68577502	2	neutral	AA	43.0055	somatic	0	0.0304770987445124	0.0265456573366724
14	79640056	79649743	1	loss	A	-1	germline	1	0.00721182973799387	0.00978847147609074
14	99927863	99931092	5	gain	AAABB	100	germline	1	0.0832692617722961	0.270044982739463
14	102995413	103001871	2	neutral	AA	100	somatic	0	0.521983857886152	0.690859497581784
14	104054525	104080357	2	neutral	AA	100	somatic	0	0.328025118354	0.520809255047178
15	0	20271662	4	gain	AAAB	-1	somatic	0	0.375254008803342	0.633321625603115
15	20271662	20274891	4	gain	AAAB	14.8792	germline	1	0.0832740073825427	0.270053224812354
15	20274891	20339471	4	gain	AAAB	-1	somatic	0	NA	NA
15	20339471	20342700	8	gain	AAAAABBB	10.4897	germline	1	0.0832653072644424	0.270038114485656
15	20342700	20358845	4	gain	AAAB	3.03252	germline	1	0.000107576070430411	9.08382927881091e-05
15	20358845	20378219	4	gain	AAAB	-1	germline	1	NA	NA
15	20378219	20381448	3	gain	AAB	21.1026	germline	1	0.0833657989178204	0.270212607648425
15	20381448	20384677	4	gain	AAAB	-1	germline	1	NA	NA
15	20384677	20672058	4	gain	AAAB	0.874739	germline	1	1.97648937046538e-09	7.56236184784598e-11
15	38289482	38299169	2	neutral	AA	100	germline	1	0.105044547615759	0.303084219403891
15	42119076	42706754	2	neutral	AA	100	somatic	0	0.319642936501197	0.0455155403797446
15	45257664	45277038	2	neutral	AA	100	somatic	0	0.273703257674648	0.385519698759544
15	48803106	48932266	2	neutral	AA	50.3869	somatic	0	0.479644274966987	0.690575338893112
15	51641397	51670458	2	neutral	AA	100	somatic	0	0.906070038413481	0.993141065111425
15	52080541	52306571	3	gain	AAB	0.432473	germline	1	6.42136551833426e-47	0
15	52306571	52316258	3	gain	AAB	20.9552	germline	1	0.00270674928832448	0.00497335757560624
15	59365165	59374852	2	neutral	AA	54.5873	somatic	0	0.950984715986404	0.980640077730101
15	61221840	61237985	2	neutral	AA	100	somatic	0	0.0863403030653868	0.204406426925693
15	63185072	63294858	2	neutral	AA	54.5679	germline	1	0.158490058728711	0.357321516376875
15	70127422	70137109	2	neutral	AA	37.3405	somatic	0	0.465043127580556	0.363144912425612
15	71373816	71448083	2	neutral	AA	74.1775	somatic	0	0.395922191277901	0.639365986116505
15	72093883	72097112	1	loss	A	-1	germline	1	0.0833040680020281	0.270105428871539
15	76591880	76595109	0	loss	-	-1	germline	1	0.0832653072644424	0.270038114485653
15	76750101	76876032	2	neutral	AA	100	somatic	0	0.869373639410622	0.641310234806239
15	80114719	80205131	2	neutral	AA	100	germline	1	0.265747146545149	0.363345424319271
15	83873275	83876504	1	loss	A	-1	germline	1	0.0838037235289731	0.27097199070433
15	89766200	89779116	2	neutral	AA	54.5791	somatic	0	0.684059960373071	0.680201475538806
15	91296746	91364555	2	neutral	AA	26.8068	somatic	0	0.703745962583767	0.989066543884109
15	97186442	97228419	2	neutral	AA	100	somatic	0	0.496434323570456	0.491567742017848
16	845998	849227	3	gain	AAB	7.19299	germline	1	0.0832850813251279	0.270072457029864
16	1023593	1026822	3	gain	AAB	5.34845	germline	1	0.0832874544680183	0.270076578349399
16	4646531	4656218	2	neutral	AA	36.3786	somatic	0	0.630273123704399	0.830460418642871
16	7058594	7065052	2	neutral	AA	100	somatic	0	0.714769607114087	0.957371621401314
16	12631848	12657680	2	neutral	AA	27.5354	somatic	0	0.258064467029882	0.252149329493075
16	17162135	17191196	2	neutral	AA	36.5684	somatic	0	0.464375030631844	0.786467416811777
16	19396603	19506389	2	neutral	AA	100	somatic	0	0.0174993922651552	0.0424036987758289
16	20565501	20568730	1	loss	A	-1	somatic	0	0.0832755893013103	0.270055972210787
16	21556804	21582636	4	gain	AABB	3.76602	germline	1	9.64300639662038e-07	2.25264388364899e-07
16	22615916	22693412	4	gain	AAAB	2.07656	germline	1	4.52322766402388e-16	0
16	22693412	22699870	4	gain	AABB	34.4518	germline	1	0.0143101215067841	0.0366381934563625
16	25328276	25331505	0	loss	-	-1	germline	1	0.0832668890493276	0.270040861771874
16	30510821	30572172	2	neutral	AA	100	somatic	0	0.373776443910798	0.523178479520963
16	34062721	34065950	26	gain	AAAAAAAAAAAAAAAAABBBBBBBBB	16.2012	germline	1	0.0832653072644424	0.270038114485656
16	34082095	34085324	15	gain	AAAAAAAAABBBBBB	100	germline	1	0.0832653072644424	0.270038114485656
16	34085324	34088553	3	gain	AAB	12.9937	germline	1	0.0832993210041281	0.270097185635679
16	34095011	34098240	11	gain	AAAAAAABBBB	4.50913	germline	1	0.0832653072644424	0.270038114485656
16	34098240	34101469	4	gain	AAAA	2.87966	germline	1	0.0832740073825427	0.270053224812354
16	34211255	34214484	4	gain	AABB	4.27021	germline	1	0.0832755893013103	0.27005597221079
16	34763414	34960383	3	gain	AAA	9.65637	somatic	0	3.39992362484943e-07	1.10239738781992e-07
16	35993663	36090533	2	neutral	AA	3.20904	germline	1	2.78146252061168e-07	5.54601158446744e-05
16	36122823	36126052	5	gain	-	-1	germline	1	0.0832692617722961	0.270044982739463
16	50017210	50059187	2	neutral	AA	65.8139	somatic	0	0.0482188742183427	0.0488752478518885
16	57689314	57695772	1	loss	A	-1	somatic	0	0.0276149794058143	0.0549970742560741
16	69504225	69852957	2	neutral	AA	21.3001	somatic	0	0.291167197467099	0.106635266778942
16	70150025	70162941	3	gain	AAB	3.83444	germline	1	0.000532869363350619	0.000672179080636659
16	74108779	74112008	1	loss	A	-1	somatic	0	0.0850441724678192	0.273114016970964
16	75009670	75058105	2	neutral	AA	100	germline	1	0.481765221708006	0.545211799040681
16	76504697	76511155	0	loss	-	-1	germline	1	0.014312867672822	0.0366513506567691
16	78335540	78351685	1	loss	A	-1	germline	1	0.000302668404254478	0.000266567327780631
16	79414026	79420484	2	neutral	AA	100	somatic	0	0.882690053376987	0.918771368702265
16	84467411	84470640	0	loss	-	-1	germline	1	0.0832653072644424	0.270038114485653
16	85820362	85855881	2	neutral	AA	24.5022	somatic	0	0.758785295284722	0.942683361313103
16	87793281	87799739	1	loss	A	-1	germline	1	0.0168448463867793	0.0437992222651454
16	89010614	89078423	2	neutral	AA	32.7781	germline	1	0.355088804436754	0.771543125826847
17	5521590	5628147	2	neutral	AA	13.7172	somatic	0	0.0706198402957091	0.175205695168405
17	6122184	6128642	2	neutral	AA	100	germline	1	0.984420427799651	0.846118571292338
17	6312695	6348214	2	neutral	AA	54.5707	somatic	0	0.573400752582977	0.960852466909861
17	6839022	6858396	2	neutral	AA	36.3787	somatic	0	0.653947015815253	0.953810854602342
17	11240149	11249836	2	neutral	AA	100	somatic	0	0.325251302108369	0.567293083974902
17	11498469	11530759	2	neutral	AA	13.642	germline	1	0.0634833992320815	0.152489862991417
17	15886680	15889909	1	loss	A	-1	somatic	0	0.0865325194203057	0.275668321415313
17	16816632	16819861	3	gain	AAB	21.1298	somatic	0	0.0832890365937096	0.27007932592126
17	21288797	21292026	3	gain	AAB	2.77007	germline	1	0.0833064415831507	0.270109550558335
17	21292026	21304942	4	gain	AABB	0.239381	germline	1	0.000532249358770238	0.000671159320098647
17	21853872	21860330	5	gain	-	-1	germline	1	0.0143075006000659	0.0366340591898116
17	21860330	21886162	3	gain	-	-1	germline	1	9.81063153397583e-07	2.41927380906226e-07
17	21886162	21911994	1	loss	A	-1	germline	1	1.92879122799564e-06	1.31481683551815e-06
17	21911994	21966887	0	loss	-	-1	germline	1	1.1925626399771e-12	5.3179682879545e-14
17	21966887	21979803	17	gain	-	-1	germline	1	0.014306127913165	0.036631428505439
17	21979803	21989490	8	gain	-	-1	germline	1	0.014306127913165	0.036631428505439
17	22125108	22134795	5	gain	AAABB	1.96687	germline	1	0.00270026211213908	0.0049581527789283
17	22134795	22138024	4	gain	AABB	1.7246	germline	1	0.0832740073825427	0.270053224812354
17	22138024	22141253	6	gain	AAAABB	1.09821	germline	1	0.0832684708585545	0.270043609078501
17	22141253	22154169	5	gain	AAABB	0.341221	germline	1	0.000532135105114606	0.00067104916263272
17	22157398	22160627	3	gain	AAB	2.85889	germline	1	0.0832834992602984	0.270069709509011
17	22709557	22732160	2	neutral	AA	10.9108	somatic	0	0.335107150260535	0.287532377699736
17	26784555	26787784	3	gain	-	-1	germline	1	0.0833001121552279	0.270098559495571
17	26787784	26791013	4	gain	-	-1	germline	1	0.0832724254881181	0.270050477434321
17	26791013	26803929	3	gain	-	-1	germline	1	0.000547930321110552	0.000715232775480801
17	26807158	26820074	4	gain	-	-1	germline	1	0.0027007851111612	0.00495876320404121
17	26820074	26823303	3	gain	-	-1	germline	1	0.0833016944756876	0.270101307230657
17	26823303	26826532	5	gain	-	-1	germline	1	0.0832708436180359	0.270047730076691
17	26826532	26842677	3	gain	-	-1	germline	1	0.000107797342512712	9.1055205886037e-05
17	26842677	26845906	1	loss	A	-1	somatic	0	0.12223314573337	0.332260326224753
17	26852364	26855593	4	gain	-	-1	somatic	0	0.0832787532118746	0.27006146706887
17	26865280	26868509	7	gain	-	-1	germline	1	0.0832668890493276	0.270040861771877
17	26868509	26878196	3	gain	-	-1	germline	1	0.00270378846117166	0.00496456567943471
17	26936318	26939547	17	gain	AAAAAAAAAAABBBBBB	7.62013	germline	1	0.0832653072644424	0.270038114485656
17	27724194	27762942	2	neutral	AA	32.2907	somatic	0	0.995763095711556	0.857425923530569
17	28599253	28815596	2	neutral	AA	100	somatic	0	0.316155035055529	0.458467541379452
17	41137460	41192353	2	neutral	AA	20.7885	somatic	0	0.0939822938520826	0.206481466133184
17	43714202	43727118	2	neutral	AA	54.5788	germline	1	0.120864692820495	0.310450447073877
17	44566658	44576345	2	neutral	AA	100	somatic	0	0.968393382118982	0.888452383614833
17	51263604	51305581	2	neutral	AA	100	somatic	0	0.886918549627524	0.698736448435917
17	56543019	56727072	2	neutral	AA	100	somatic	0	0.677967072943246	0.462794483477541
17	61522137	61551198	2	neutral	AA	36.7272	somatic	0	0.638991471282031	0.925862834662364
17	65280693	65287151	2	neutral	AA	100	germline	1	0.169898927041687	0.441409824210093
17	67298818	67305276	2	neutral	AA	100	somatic	0	0.120440615532013	0.170777330867609
17	68874570	68887486	2	neutral	AA	100	somatic	0	0.949781440825079	0.763671766746519
17	76779162	76785620	2	neutral	AA	100	germline	1	0.0999467254721648	0.129700599069162
17	76785620	76792078	1	loss	A	-1	somatic	0	0.0229024333069527	0.0562024062572019
17	76792078	76798536	2	neutral	AA	20.1115	germline	1	0.172422200626811	0.353950485566104
17	80928427	80931656	3	gain	AAB	49.7543	somatic	0	0.0833064415831507	0.270109550558335
17	81809944	81819631	2	neutral	AA	54.5678	somatic	0	0.0166208209171636	0.0308232746343811
17	82584904	82588133	8	gain	AAAAABBB	100	germline	1	0.0832653072644424	0.270038114485656
18	2680070	2692986	2	neutral	AA	100	somatic	0	0.77218651291411	0.998685504632296
18	5305247	5308476	1	loss	A	-1	germline	1	0.0903548189549759	0.282141080371641
18	12060315	12092605	2	neutral	AA	1.75346	somatic	0	0.426628092983871	0.646209507524997
18	22951732	22977564	2	neutral	AA	54.568	somatic	0	0.295064389900596	0.698304550560614
18	27475561	27523996	2	neutral	AA	55.0713	somatic	0	0.0526218325492262	0.323175661970965
18	29593785	29597014	1	loss	A	-1	somatic	0	0.100101173587359	0.298148805971786
18	31534414	32587068	2	neutral	AA	30.2179	somatic	0	0.634264800387177	0.218026552055722
18	38573634	38583321	2	neutral	AA	100	somatic	0	0.657652441320694	0.818886457762027
18	40678942	40688629	1	loss	A	-1	germline	1	0.00557539670011053	0.00950573322049197
18	41282765	41289223	1	loss	A	-1	germline	1	0.0205475917863291	0.055943582500021
18	41347345	41350574	1	loss	A	-1	somatic	0	0.109962249339426	0.313697892534232
18	46959347	46962576	3	gain	AAB	21.7124	germline	1	0.0832953653399292	0.270090316412733
18	50168973	50172202	1	loss	A	-1	germline	1	0.105851281847679	0.307289879027103
18	52790921	52797379	2	neutral	AA	100	somatic	0	0.0193667911987935	0.0520650997402382
18	53385057	53404431	2	neutral	AA	100	somatic	0	0.774410223249936	0.962629585798269
18	53678896	53685354	1	loss	A	-1	germline	1	0.0143254810383983	0.0366889654393557
18	53685354	53701499	2	neutral	AA	100	somatic	0	0.560037090452038	0.743143527291763
18	53740247	54082521	2	neutral	AA	31.2748	somatic	0	0.157205211087269	0.107141558545861
18	57024140	57027369	3	gain	AAA	100	germline	1	0.0832842902896701	0.270071083266887
18	58667701	58674159	2	neutral	AA	54.5683	somatic	0	0.985717223148115	0.954236445659151
18	58696762	58819464	2	neutral	AA	100	somatic	0	0.303986068060224	0.509955781083522
18	58877586	58890502	2	neutral	AA	100	somatic	0	0.846825353159097	0.830351895089329
18	66097630	66104088	1	loss	A	-1	germline	1	0.0285133757885249	0.0559207944014587
18	69610782	69620469	2	neutral	AA	54.5873	somatic	0	0.11061970821445	0.26309996138503
18	69933682	70146796	2	neutral	AA	27.2856	germline	1	0.643979220052331	0.470242463271146
18	71186534	71209137	2	neutral	AA	14.8391	germline	1	0.476653178050774	0.824839002266666
18	74615732	74618961	3	gain	-	-1	germline	1	0.0832993210041281	0.270097185635679
18	79197683	79200912	4	gain	AAAB	25.0655	germline	1	0.0832724254881181	0.270050477434321
18	79520583	79523812	1	loss	A	-1	somatic	0	0.0998748621593814	0.297784659171188
19	7449303	7452532	11	gain	AAAAAAABBBB	6.44348	germline	1	0.0832653072644424	0.270038114485656
19	8879750	8921727	2	neutral	AA	1.21958	germline	1	0.0298310542297193	0.0382000317239548
19	11450034	11569507	2	neutral	AA	21.9886	somatic	0	0.281525511052989	0.39242358904512
19	12583413	12589871	1	loss	A	-1	germline	1	0.018433148962246	0.0492971994553086
19	24327286	24404782	4	gain	AABB	0.402069	somatic	0	5.48285826912191e-16	0
19	27246302	27333485	2	neutral	AA	1.41299	somatic	0	4.86899296163795e-09	2.08180350180776e-07
19	27336714	27339943	4	gain	AAAB	3.81174	germline	1	0.0832716345500342	0.270049103752956
19	27339943	27343172	3	gain	AAB	5.81538	germline	1	0.0833388860159709	0.270165884878849
19	27343172	27388378	6	gain	AAAABB	0.119479	somatic	0	1.97558426484944e-09	7.58333396078115e-11
19	27388378	27391607	5	gain	AAABB	4.02028	germline	1	0.0832708436180359	0.270047730076691
19	27391607	27398065	6	gain	AAAABB	0.492652	germline	1	0.014307126219389	0.0366329317334123
19	33872210	33898042	2	neutral	AA	19.0567	somatic	0	0.164921679142098	0.259868931191936
19	37850338	37856796	1	loss	A	-1	somatic	0	0.026784875893488	0.0569029647095834
19	40856537	40862995	1	loss	A	-1	germline	1	0.0210159925628214	0.0461132618766904
19	44857268	44870184	2	neutral	AA	100	somatic	0	0.128822983523109	0.462288081827825
19	45367450	45373908	2	neutral	AA	100	somatic	0	0.934403371981807	0.891032149054664
19	47766597	47776284	1	loss	A	-1	germline	1	0.00565428195152428	0.00929368792883833
19	48667488	48670717	3	gain	AAA	34.2953	somatic	0	0.0832953653399292	0.270090316412733
19	49442448	49461822	2	neutral	AA	8.87849	somatic	0	0.219911524796388	0.332527001524916
19	53801598	53846804	2	neutral	AA	54.5693	somatic	0	0.00778717190768968	0.0306435770299335
19	55974715	56016692	2	neutral	AA	16.1593	somatic	0	0.0337995245464843	0.0778247575543396
19	56090959	56120020	2	neutral	AA	27.7553	somatic	0	0.695262145204969	0.744716223756543
20	64580	67809	8	gain	-	-1	germline	1	0.0832653072644424	0.270038114485656
20	7417013	7423471	1	loss	A	-1	somatic	0	0.0264245836446731	0.0555076593046809
20	21304942	21308171	0	loss	-	-1	germline	1	0.0832660981538423	0.270039488126213
20	26284060	26309892	3	gain	-	-1	germline	1	2.21659785052245e-05	1.23901854566233e-05
20	26316350	26322808	0	loss	-	-1	germline	1	0.0143077501919848	0.0366355625122371
20	28780077	28786535	7	gain	-	-1	germline	1	0.0143065022707978	0.0366325559213591
20	28802680	28873718	9	gain	-	-1	somatic	0	9.63561048146433e-07	2.25153489075147e-07
20	28941527	28944756	4	gain	-	-1	germline	1	0.0832740073825427	0.270053224812354
20	29264427	29280572	4	gain	-	-1	germline	1	0.000532302098936029	0.000671365911041777
20	29287030	29293488	4	gain	-	-1	germline	1	0.0143087485980695	0.0366366900394786
20	29296717	29390358	3	gain	-	-1	germline	1	2.21543361749654e-05	1.23806588026021e-05
20	29890853	29894082	6	gain	-	-1	germline	1	0.0832684708585545	0.270043609078501
20	30149173	30152402	3	gain	-	-1	somatic	0	0.083280335203672	0.270064214528514
20	30940278	30943507	6	gain	-	-1	germline	1	0.0832684708585545	0.270043609078501
20	30975797	30979026	4	gain	-	-1	somatic	0	0.0832787532118746	0.27006146706887
20	30979026	31001629	3	gain	-	-1	somatic	0	0.00062771555858112	0.000937075751300198
20	31066209	31069438	51	gain	-	-1	germline	1	0.0832653072644424	0.270038114485656
20	31163079	31166308	3	gain	-	-1	germline	1	0.0833325545913499	0.270154892142984
20	31166308	31169537	5	gain	-	-1	germline	1	0.0832692617722961	0.270044982739463
20	31169537	31182453	3	gain	-	-1	somatic	0	0.000546280031912225	0.000710700529321651
20	31182453	31188911	16	gain	-	-1	germline	1	0.014306127913165	0.036631428505439
20	31230888	31240575	3	gain	-	-1	germline	1	0.00270533683218844	0.00496731639212822
20	31240575	31243804	53	gain	-	-1	germline	1	0.0832653072644424	0.270038114485656
20	37520980	37553270	2	neutral	AA	100	somatic	0	0.940120766851846	0.195952543619589
20	38121574	38124803	1	loss	A	-1	somatic	0	0.123779410914565	0.334543444213235
20	40378645	40433538	2	neutral	AA	89.1798	somatic	0	0.189299259233179	0.425803073520877
20	43578584	43643164	2	neutral	AA	27.9669	somatic	0	0.00818473898421745	0.0106309390851481
20	43643164	43646393	0	loss	-	-1	germline	1	0.0832660981538423	0.270039488126213
20	43678683	43698057	2	neutral	AA	12.9829	somatic	0	0.511731489297941	0.375121220259045
20	45612854	45619312	2	neutral	AA	7.38034	somatic	0	0.738257286183569	0.858881041263744
20	45861487	45871174	2	neutral	AA	100	germline	1	0.876750306166139	0.704020596986
20	45961586	46016479	2	neutral	AA	17.7885	germline	1	0.679599104179856	0.89921704907577
20	46788210	46791439	3	gain	AAB	11.4469	germline	1	0.0832834992602984	0.270069709509011
20	49939714	49942943	2	neutral	AA	54.5678	germline	1	0.827421037121498	0.909248715128996
20	49988149	49991378	2	neutral	AA	100	somatic	0	0.144491822306441	0.364084225511799
20	50152828	50156057	2	neutral	AA	100	somatic	0	0.125425237266368	0.336960636803473
20	50482186	50485415	2	neutral	AA	100	somatic	0	0.315827833854372	0.561261274969648
20	52028877	52061167	2	neutral	AA	74.7989	germline	1	0.0217548151401012	0.0818153337254559
20	54030857	54040544	1	loss	A	-1	germline	1	0.00488918984640395	0.00780389783415725
20	57192048	57221109	2	neutral	AA	36.3795	somatic	0	0.107276643090457	0.218354827623425
20	58289908	58360946	2	neutral	AA	100	somatic	0	0.167281710112382	0.0837712813287359
20	60107835	60114293	2	neutral	AA	55.3983	somatic	0	0.301804671520245	0.285570727875369
20	61044245	61047474	4	gain	AABB	7.1162	germline	1	0.0832755893013103	0.27005597221079
20	61318710	61351000	2	neutral	AA	8.6455	germline	1	0.211506838280244	0.187409337049675
20	63259339	63262568	2	neutral	AA	100	somatic	0	0.14002065808169	0.357868355888782
21	7917508	7923966	5	gain	-	-1	somatic	0	0.0143073758055467	0.0366336833676386
21	8989536	8995994	9	gain	AAAAAABBB	2.60732	somatic	0	0.014306127913165	0.036631428505439
21	9735435	9764496	4	gain	AAAB	4.53096	somatic	0	0.00270087607696093	0.00495891582108299
21	10652471	10658929	8	gain	AAAAAABB	5.83623	germline	1	0.0143062526980825	0.0366318043073725
21	10658929	10665387	5	gain	AAABB	9.37494	germline	1	0.0143075006000659	0.0366336833676386
21	10665387	10668616	6	gain	AAAABB	7.49155	germline	1	0.0832684708585545	0.270043609078501
21	10668616	10691219	5	gain	AAAAB	2.38719	germline	1	4.59488145547522e-06	1.66374430055072e-06
21	10691219	10694448	50	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBB	100	germline	1	0.0832653072644424	0.270038114485656
21	10694448	10700906	5	gain	AAABB	16.9891	germline	1	0.0143076253955452	0.0366340591898116
21	10700906	10739654	6	gain	AAAABB	0.475105	germline	1	1.97443006118304e-09	7.55537854502109e-11
21	10752570	10755799	11	gain	AAAAAAABBBB	1.4955	germline	1	0.0832653072644424	0.270038114485656
21	14036463	14071982	2	neutral	AA	36.3786	germline	1	0.717832086777608	0.993674486991686
21	15324834	15334521	1	loss	A	-1	germline	1	0.00731708763238108	0.00928773552916584
21	16716533	16729449	2	neutral	AA	100	somatic	0	0.360075933262853	0.26418421630425
21	16968395	16974853	1	loss	A	-1	somatic	0	0.0293706564161071	0.0576355061824351
21	20271662	20326555	2	neutral	AA	29.7682	somatic	0	0.567833594969584	0.732671639930817
21	20584875	20591333	1	loss	A	-1	somatic	0	0.0285567882508367	0.056195323889113
21	29090061	29125580	2	neutral	AA	13.6008	somatic	0	0.552316484950212	0.650997699565288
21	29710029	29742319	2	neutral	AA	54.5873	germline	1	0.99677754672694	0.211760661274059
21	31783047	31786276	3	gain	AAB	7.102	somatic	0	0.0832929920144487	0.270086194940174
21	32235107	32335206	2	neutral	AA	69.193	germline	1	0.219873924830467	0.319356728711746
21	32357809	32364267	2	neutral	AA	54.5679	somatic	0	0.90330334516853	0.943826634403623
21	33245784	33268387	2	neutral	AA	54.5678	somatic	0	0.930735231052993	0.890812790762186
21	34656857	34673002	2	neutral	AA	30.2499	somatic	0	0.835496060295676	0.985887638116353
21	34779559	34837681	2	neutral	AA	54.5679	somatic	0	0.930417523889942	0.724720271502613
21	35767633	35770862	1	loss	A	-1	somatic	0	0.122271805461227	0.332317553957636
21	41473276	41476505	1	loss	A	-1	somatic	0	0.08558297618641	0.274040351843367
21	41805863	41809092	3	gain	AAA	7.03212	germline	1	0.0832858723666719	0.270073830797942
21	43262142	43265371	5	gain	AAAAB	7.88062	germline	1	0.0832700526921232	0.270046356405527
21	43278287	43281516	1	loss	A	-1	somatic	0	0.117697338845492	0.325493056981662
21	43336409	43339638	3	gain	AAB	10.8446	somatic	0	0.083296947587349	0.270093064086609
21	45548274	45557961	1	loss	A	11.6531	somatic	0	0.00788707408952821	0.0100643987527071
21	45968044	45971273	1	loss	A	-1	somatic	0	0.105126071159922	0.306147914030768
22	10726738	10729967	12	gain	-	-1	somatic	0	0.0832653072644424	0.270038114485656
22	11211088	11214317	6	gain	-	-1	somatic	0	0.0832684708585545	0.270043609078501
22	11627629	11630858	4	gain	-	-1	germline	1	0.0832732164322876	0.270051851120787
22	16558312	16567999	2	neutral	AA	30.6206	somatic	0	0.498400408165637	0.796488854156925
22	17246089	17252547	2	neutral	AA	27.3984	somatic	0	0.105942779272337	0.152604616098627
22	17255776	17304211	2	neutral	AA	100	somatic	0	0.667528210888721	0.474525339230931
22	17875744	17878973	4	gain	AAAA	2.31404	germline	1	0.0832787532118746	0.27006146706887
22	19280359	19283588	2	neutral	AA	100	somatic	0	0.141837142748999	0.360388670752229
22	19583885	19590343	1	loss	A	-1	somatic	0	0.0294063020183884	0.0572762583180318
22	19683984	20052090	1	loss	A	-1	somatic	0	2.03907084265262e-61	0
22	20065006	20081151	2	neutral	AA	19.9174	somatic	0	0.0177200019644032	0.0117552530507924
22	20927149	20933607	2	neutral	AA	47.4045	somatic	0	0.471747350422805	0.685744791915121
22	21608468	21937826	2	neutral	AA	13.5443	somatic	0	0.34047565457963	0.414806530431883
22	22318848	22357596	2	neutral	AA	1.7434	germline	1	0.131815095421669	0.138977397539125
22	22861320	22864549	2	neutral	AA	100	somatic	0	0.802443297371752	0.898816945306913
22	23290777	23762211	1	loss	A	-1	somatic	0	7.42448685636015e-39	0
22	24014073	24026989	2	neutral	AA	100	somatic	0	0.762138133557971	0.925282801482708
22	24814865	24818094	2	neutral	AA	100	somatic	0	0.325773554618747	0.570945498061688
22	25799710	25825542	2	neutral	AA	21.8278	somatic	0	0.131383536803848	0.427003020614885
22	26645708	26648937	2	neutral	AA	100	somatic	0	0.814232778747231	0.903806902681219
22	26791013	26797471	2	neutral	AA	100	somatic	0	0.104873882544255	0.143041898626835
22	28001888	28005117	2	neutral	AA	100	somatic	0	0.826490084913304	0.908873716155583
22	29119122	29122351	4	gain	AAAB	14.4979	germline	1	0.0832755893013103	0.27005597221079
22	29122351	29125580	2	neutral	AA	54.7752	somatic	0	0.726817815478604	0.86318785902986
22	29170786	29174015	2	neutral	AA	100	somatic	0	0.634967399603404	0.811772554757313
22	31757215	31763673	2	neutral	AA	55.1824	somatic	0	0.576424014584492	0.930376299409847
22	32328748	32331977	1	loss	A	-1	somatic	0	0.118210039539862	0.326264907789789
22	32583839	32590297	2	neutral	AA	54.8599	somatic	0	0.222384181634833	0.571765060187771
22	33678470	33688157	2	neutral	AA	100	somatic	0	0.0902610544175694	0.32013115815436
22	34095011	34098240	2	neutral	AA	100	somatic	0	0.766632913040207	0.882707377858893
22	34466346	34469575	1	loss	A	-1	somatic	0	0.111009580669089	0.315316177628403
22	35157352	35160581	2	neutral	AA	100	somatic	0	0.396078394008351	0.635664926033504
22	35493168	35515771	2	neutral	AA	54.5786	somatic	0	0.679403659819411	0.909593240857888
22	36746020	36752478	1	loss	A	-1	germline	1	0.02366121505771	0.0561114834388101
22	36955905	37001111	2	neutral	AA	47.8844	somatic	0	0.41595682601726	0.614801766814638
22	37078607	37101210	2	neutral	AA	31.8637	somatic	0	0.223392082356827	0.43968102856701
22	37417652	37424110	2	neutral	AA	100	somatic	0	0.721473812201892	0.706120526874094
22	38086055	38089284	2	neutral	AA	54.5678	somatic	0	0.187706816798168	0.420500326153813
22	39129022	39135480	2	neutral	AA	54.5678	somatic	0	0.765559000121935	0.728484536030019
22	39187144	39245266	2	neutral	AA	29.0441	somatic	0	0.856442004461408	0.929409894366873
22	39287243	39319533	2	neutral	AA	54.845	somatic	0	0.184161775815068	0.136657927076586
22	39422861	39455151	2	neutral	AA	54.5687	somatic	0	0.170208377751181	0.256904644782317
22	42396770	42399999	2	neutral	AA	100	somatic	0	0.962700860083222	0.9546500512172
22	42703525	42709983	1	loss	A	-1	somatic	0	0.0314704290543765	0.0619241513476055
22	44947680	44967054	2	neutral	AA	36.3918	somatic	0	0.843214856691984	0.958024883298382
22	45461091	45464320	2	neutral	AA	100	somatic	0	0.0903581982951694	0.282151006504234
22	45887319	45893777	2	neutral	AA	8.67038	somatic	0	0.166165102793735	0.499465224885771
22	48786961	48790190	1	loss	A	-1	somatic	0	0.12377182069787	0.334532265904902
22	48819251	48857999	2	neutral	AA	9.49217	somatic	0	0.607969803561017	0.61703405334115
22	49500570	49503799	2	neutral	AA	100	somatic	0	0.0847204446092625	0.272556267911676
22	49613585	49678165	2	neutral	AA	17.3524	somatic	0	0.513283411213245	0.933903828492963
22	49765348	49768577	2	neutral	AA	100	somatic	0	0.863686472126751	0.923278124773063
22	50136683	50139912	2	neutral	AA	100	somatic	0	0.177989744305566	0.408333848502966
22	50643636	50646865	3	gain	AAB	5.30011	germline	1	0.0832787532118746	0.27006146706887
X	3522839	3526068	2	gain	AA	9.10555	germline	1	0.855735571251855	0.920309144357351
X	5137339	5140568	0	loss	-	-1	somatic	0	0.0832660981538423	0.270039488126213
X	5440865	5447323	0	loss	-	-1	somatic	0	0.0143134918662961	0.0366532305942516
X	26083862	26087091	0	loss	-	-1	somatic	0	0.0832653072644424	0.270038114485653
X	70511673	70514902	0	loss	-	-1	germline	1	0.0832660981538423	0.270039488126213
X	140723049	140726278	2	gain	AA	6.25428	somatic	0	0.312896298611921	0.558335554887549
Y	10655700	10658929	9	gain	-	-1	germline	1	0.0832653072644424	0.270038114485656
Y	10746112	10749341	6	gain	-	-1	germline	1	0.0832684708585545	0.270043609078501
Y	10749341	10752570	2	gain	-	-1	germline	1	0.0840369282548553	0.271375700739943
Y	10752570	10755799	6	gain	-	-1	germline	1	0.0832684708585545	0.270043609078501
Y	10755799	10759028	3	gain	-	-1	germline	1	0.083361049070732	0.270204362025302
Y	10759028	10765486	7	gain	-	-1	germline	1	0.0143067518473538	0.0366325559213591
Y	10765486	10775173	3	gain	-	-1	germline	1	0.00270335597285432	0.00496510043085818
Y	10775173	10778402	6	gain	-	-1	germline	1	0.0832684708585545	0.270043609078501
Y	10778402	10784860	2	gain	-	-1	germline	1	0.885809770199952	0.699536508705602
Y	10784860	10807463	4	gain	-	-1	germline	1	4.59872119950196e-06	1.66793110822905e-06
Y	10810692	10901104	2	gain	-	-1	germline	1	0.0547614448327583	0.00859875418916378
Y	10923707	10926936	6	gain	-	-1	germline	1	0.0832684708585545	0.270043609078501
Y	10926936	10933394	2	gain	-	-1	germline	1	0.715919867681417	0.732215832442545
Y	10933394	10936623	6	gain	-	-1	germline	1	0.0832684708585545	0.270043609078501
Y	10936623	10985058	3	gain	-	-1	germline	1	0.000114714767382231	3.37633300419027e-05
Y	10985058	10988287	15	gain	-	-1	germline	1	0.0832653072644424	0.270038114485656
Y	10988287	10997974	3	gain	-	-1	germline	1	0.0109548381566225	0.0559298293913921
Y	10997974	11001203	8	gain	-	-1	germline	1	0.0832653072644424	0.270038114485656
Y	11004432	11010890	2	gain	-	-1	germline	1	0.721406780696648	0.8481039183428
Y	11014119	11017348	20	gain	-	-1	germline	1	0.0832653072644424	0.270038114485656
Y	11017348	11039951	2	gain	AA	21.2412	germline	1	0.0482270350622325	0.121994718381329
Y	11291813	11304729	34	gain	AAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBB	21.1009	germline	1	0.000532029660486508	0.000670952788754731
Y	11304729	11333790	10	gain	AAAAAAABBB	1.15481	germline	1	0.000532060413158331	0.000671007857953154
Y	11530759	11533988	20	gain	AAAAAAAAAAAAAABBBBBB	8.82515	germline	1	0.0832653072644424	0.270038114485656
Y	11685751	11688980	4	gain	AAAB	18.2978	germline	1	0.0832755893013103	0.27005597221079
Y	11688980	11692209	7	gain	AAAAABB	15.4561	germline	1	0.0832660981538423	0.270039488126216
Y	11692209	11721270	2	gain	AA	4.21508	somatic	0	0.000742972104489085	6.88620041541244e-05
Y	11721270	11724499	42	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBB	100	germline	1	0.0832653072644424	0.270038114485656
Y	11724499	11747102	3	gain	AAB	1.44742	germline	1	0.00197140011827453	0.002502355126214
Y	11747102	11750331	9	gain	AAAAAABBB	27.8477	germline	1	0.0832653072644424	0.270038114485656
Y	26636021	26642479	4	gain	AABB	53.0656	germline	1	0.0143079997877446	0.036634435015358
Y	26652166	26655395	2	gain	AA	31.2003	germline	1	0.086672128084908	0.275908237142311
Y	56827171	56843316	17	gain	AAAAAAAAAAABBBBBB	5.20646	germline	1	0.000107521696201491	9.08149980511919e-05
