chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	5666325	5676000	3	gain	AAB	0.497437	germline	1	0.00272135612032664	0.00499715349912544
1	15109125	15189750	2	neutral	AA	43.1518	somatic	0	0.294049056674014	0.226411857380424
1	16611975	16618425	7	gain	AAAAAAB	31.9758	germline	1	0.0143061271152802	0.0366314272929859
1	16902225	16944150	4	gain	AAAB	3.22402	germline	1	9.64120924284912e-07	2.25245334828372e-07
1	24803475	24813150	2	neutral	AA	54.5678	germline	1	0.077141861670903	0.128721625397429
1	26132175	26138625	0	loss	-	-1	germline	1	0.0143600739606091	0.0367935622748702
1	40599525	40612425	2	neutral	AA	100	somatic	0	0.831108251897592	0.971713497698237
1	42144300	42153975	2	neutral	AA	100	somatic	0	0.553100218315126	0.800631815229254
1	48868425	49126425	2	neutral	AA	48.3736	somatic	0	0.000852505435441881	0.0136451434136882
1	52906125	53154450	2	neutral	AA	100	somatic	0	0.00907287735256839	0.0203062863485602
1	53628525	53654325	2	neutral	AA	54.5905	somatic	0	0.650126004299853	0.549260887961074
1	55663500	55669950	1	loss	A	-1	somatic	0	0.0206125558591155	0.0561492723189055
1	56450400	56550375	2	neutral	AA	100	somatic	0	0.540545525893502	0.514590943713625
1	60333300	60404250	2	neutral	AA	58.0998	somatic	0	0.401698469451474	0.712627210412124
1	65373975	65428800	2	neutral	AA	55.1617	somatic	0	0.458224483191322	0.711155616698987
1	72343200	72346425	0	loss	-	-1	germline	1	0.0832660930736402	0.270039481478488
1	74600700	74620050	2	neutral	AA	100	somatic	0	0.249466085888078	0.558679275171417
1	92954175	92963850	2	neutral	AA	54.5678	somatic	0	0.131799586709667	0.343504458303079
1	93979725	93986175	2	neutral	AA	100	germline	1	0.918816705784424	0.888558245563665
1	94689225	94715025	2	neutral	AA	100	somatic	0	0.10157331673939	0.271263922657136
1	98701125	98707575	2	neutral	AA	100	somatic	0	0.751990038326742	0.888047555512012
1	105522000	105531675	2	neutral	AA	54.5873	somatic	0	0.709296736322008	0.558649315451275
1	111688200	111701100	2	neutral	AA	54.5678	somatic	0	0.481894278951408	0.823597389372762
1	117360975	117396450	2	neutral	AA	54.571	somatic	0	0.209695228171758	0.293263790127365
1	118473600	118534875	2	neutral	AA	100	somatic	0	0.00327699879971318	0.0160232412120755
1	119034750	119144400	2	neutral	AA	49.4464	somatic	0	0.602166731575833	0.427534726530973
1	125068725	125075175	3	gain	-	-1	somatic	0	0.014313342866553	0.0366479124000104
1	125081625	125084850	6	gain	-	-1	germline	1	0.0832653047359334	0.270038112269749
1	125084850	125162250	3	gain	-	-1	germline	1	0.000387721320890005	0.00157090350735389
1	125162250	125165475	6	gain	-	-1	germline	1	0.0832653047359334	0.270038112269749
1	125165475	143725350	1	loss	A	-1	germline	1	2.43394088187554e-27	0
1	152787600	152797275	1	loss	A	-1	somatic	0	0.00579182025321633	0.00929371010392788
1	153258450	153271350	2	neutral	AA	100	somatic	0	0.769317388455574	0.995427141058123
1	154267875	154358175	2	neutral	AA	25.4225	somatic	0	0.00921115340416719	0.00532904987980853
1	162004650	162104625	2	neutral	AA	100	somatic	0	0.0946283745597913	0.140215676687533
1	163262400	163275300	2	neutral	AA	100	somatic	0	0.160739284163615	0.426131146020053
1	164639475	164655600	2	neutral	AA	54.5678	somatic	0	0.317066627691239	0.483492892007917
1	168722325	168773925	2	neutral	AA	54.5678	germline	1	0.0118260822931699	0.0573901966832844
1	169257675	169273800	1	loss	A	-1	germline	1	0.000351266717779393	0.000247794756714881
1	170641200	170647650	2	neutral	AA	100	somatic	0	0.652111217527019	0.927830449672915
1	180348450	180393600	2	neutral	AA	91.4752	somatic	0	0.00225376496142732	0.0110512980206557
1	180454875	180541950	2	neutral	AA	21.616	somatic	0	0.45966697912856	0.176223473310511
1	187746600	187749825	0	loss	-	-1	germline	1	0.0832660930736402	0.270039481478488
1	194045025	194051475	2	neutral	AA	100	somatic	0	0.979088397985132	0.862299809409851
1	197347425	197582850	2	neutral	AA	47.6989	somatic	0	0.812777086610409	0.948133118022077
1	197766675	197866650	2	neutral	AA	62.0496	somatic	0	0.368287748925026	0.321725685593134
1	199140525	199143750	0	loss	-	-1	somatic	0	0.0832653047359334	0.270038112269754
1	206741850	206754750	2	neutral	AA	36.9029	germline	1	0.114713580898528	0.385960276962618
1	207367500	207373950	1	loss	A	-1	germline	1	0.0154419154888115	0.040034056435967
1	224011725	224014950	8	gain	AAAAAAAA	14.6466	germline	1	0.0832653047359334	0.270038112269749
1	225991875	226043475	2	neutral	AA	54.5678	germline	1	0.512047034590346	0.522696692663441
1	234776775	234783225	6	gain	AAAABB	1.7027	germline	1	0.0143061271152802	0.0366314272929859
1	236095800	236099025	5	gain	AAABB	12.9365	germline	1	0.0832668814173933	0.270040850692286
1	245857875	245877225	2	neutral	AA	100	somatic	0	0.0371575867898101	0.065664720771468
1	247818675	247841250	2	neutral	AA	54.579	somatic	0	0.298521459042636	0.800515504954471
2	3179850	3183075	6	gain	-	-1	germline	1	0.0832653047359334	0.270038112269749
2	18292200	18298650	1	loss	A	-1	somatic	0	0.018580995524376	0.0438053373460833
2	24374550	24390675	1	loss	A	-1	somatic	0	0.000238613738013696	0.00027404316644164
2	41012325	41022000	1	loss	A	-1	somatic	0	0.00379416175773068	0.0068716651025087
2	89774325	89780775	7	gain	-	-1	germline	1	0.0143061271152802	0.0366314272929859
2	89780775	89790450	5	gain	-	-1	germline	1	0.014306873423472	0.0366333002737971
2	89790450	89796900	3	gain	-	-1	germline	1	0.0146850566108242	0.0377696131762725
2	89796900	89825925	5	gain	-	-1	somatic	0	9.63829100943852e-07	2.25190062042024e-07
2	89825925	89842050	28	gain	-	-1	germline	1	0.000107518166575907	9.08056629607135e-05
2	89842050	89851725	4	gain	-	-1	germline	1	0.00270044192553832	0.00495830279394993
2	91412625	91415850	5	gain	-	-1	germline	1	0.0832668814173933	0.270040850692286
2	94537650	94540875	4	gain	-	-1	somatic	0	0.083275553597734	0.270055912378584
2	109198500	109201725	12	gain	-	-1	germline	1	0.0832653047359334	0.270038112269749
2	117041700	117044925	0	loss	-	-1	germline	1	0.0832653047359334	0.270038112269754
2	125684700	125694375	0	loss	-	-1	germline	1	0.0143089881498576	0.0366400436985157
2	126916650	126919875	0	loss	-	-1	somatic	0	0.0832684581230381	0.270043589135098
2	146105400	146118300	1	loss	A	-1	germline	1	0.000957721011731201	0.00119897153282167
2	176401050	176407500	1	loss	A	-1	somatic	0	0.0221607019508469	0.0536388272061747
2	179203575	179213250	1	loss	A	-1	somatic	0	0.00521795245445555	0.00843548906431035
2	179545425	179558325	1	loss	A	-1	somatic	0	0.00152915769781032	0.00161667352951367
2	212317875	212327550	1	loss	A	-1	somatic	0	0.00475411244416112	0.00937836071480302
2	219187125	219193575	1	loss	A	-1	germline	1	0.0204590125860474	0.0556632684778366
2	239124075	239127300	2	neutral	AA	6.37079	somatic	0	0.0969388749389841	0.293039121291916
2	239453025	239456250	2	neutral	AA	100	somatic	0	0.533088519399933	0.744398718092109
2	239546550	239549775	2	neutral	AA	100	somatic	0	0.450741558950214	0.681627779144692
2	239872275	239875500	2	neutral	AA	100	somatic	0	0.926514429519044	0.94432547587121
2	240036750	240039975	2	neutral	AA	100	somatic	0	0.0863385964020815	0.275337429994164
2	240410850	240433425	2	neutral	AA	30.9793	somatic	0	0.040184426184894	0.17665280472824
2	240836550	240849450	2	neutral	AA	59.6704	somatic	0	0.0226100603952184	0.0788262725498478
2	241046175	241055850	2	neutral	AA	100	somatic	0	0.0744215346883006	0.0938818302525654
2	241558950	241562175	2	neutral	AA	36.3787	somatic	0	0.942452537578223	0.949032135767053
2	241587975	241594425	3	gain	AAB	3.12511	somatic	0	0.0385417028595293	0.115198911629746
3	961050	993300	2	neutral	AA	21.613	somatic	0	0.188722982799528	0.24405386720811
3	26848125	27583425	2	neutral	AA	24.3494	somatic	0	0.922712015190666	0.243313046116648
3	32059725	32062950	0	loss	-	-1	germline	1	0.0832684581230381	0.270043589135098
3	46420650	46433550	2	neutral	AA	54.5679	germline	1	0.611079488001666	0.923584723468489
3	48378225	48462075	2	neutral	AA	100	somatic	0	0.392697521725303	0.800714131258336
3	51158175	51161400	2	neutral	AA	100	somatic	0	0.888196041578619	0.931975943147616
3	52467525	52528800	2	neutral	AA	54.5707	somatic	0	0.179518284601801	0.0761505981757353
3	52770675	52815825	2	neutral	AA	54.5678	somatic	0	0.424374500066939	0.587886689282473
3	52919025	52996425	2	neutral	AA	72.353	somatic	0	0.030164208075842	0.0330289224294831
3	53902650	53992950	2	neutral	AA	18.1895	germline	1	0.280338459833588	0.527468649745941
3	56511675	56518125	1	loss	A	-1	somatic	0	0.025244979752504	0.0562557140121387
3	68689275	68698950	0	loss	-	-1	germline	1	0.0143548333945651	0.03677777164831
3	73504200	73542900	2	neutral	AA	100	germline	1	0.025486268877613	0.0112421190753722
3	76616325	76626000	2	neutral	AA	36.3787	somatic	0	0.116297728115644	0.300214201116945
3	78235275	78573900	2	neutral	AA	26.7175	somatic	0	0.0254093399678919	0.0463017408215498
3	80012250	80015475	0	loss	-	-1	germline	1	0.0832660930736402	0.270039481478488
3	80118675	80154150	2	neutral	AA	36.3845	somatic	0	0.123281258757242	0.404773724617229
3	86168775	86291325	2	neutral	AA	30.3046	somatic	0	0.913800341358282	0.841121490674743
3	88261800	88268250	2	neutral	AA	100	somatic	0	0.549863167778644	0.926733859502789
3	90393525	90506400	2	neutral	AA	1.88053	germline	1	1.93517503619853e-11	6.18682771680312e-10
3	90667650	90716025	1	loss	A	-1	germline	1	1.37072607042913e-07	7.42517147767074e-09
3	99178425	99184875	1	loss	A	-1	somatic	0	0.0153967391076746	0.0393470303749063
3	101335950	101394000	2	neutral	AA	100	germline	1	0.597331255626696	0.691749207640388
3	101474625	101510100	2	neutral	AA	100	somatic	0	0.861264812516587	0.978586174969587
3	103538625	103587000	2	neutral	AA	54.8361	somatic	0	0.187517947963875	0.04480323116343
3	103657950	103677300	2	neutral	AA	100	germline	1	0.766869614667503	0.78192103142756
3	105967050	105973500	2	neutral	AA	100	germline	1	0.935208378563069	0.988197326840954
3	110436900	110453025	2	neutral	AA	100	germline	1	0.202614306188938	0.211290588573784
3	124175400	124207650	2	neutral	AA	100	somatic	0	0.765923548049326	0.89914597782778
3	128683950	128696850	3	gain	AAA	14.6704	germline	1	0.000536948497398766	0.000677320583030605
3	134856600	134863050	2	neutral	AA	100	somatic	0	0.613470603040996	0.964021640424098
3	146218275	146256975	2	neutral	AA	93.365	somatic	0	0.86583249970879	0.531406260458183
3	146666550	146673000	0	loss	-	-1	germline	1	0.0143150850805423	0.0366576566502823
3	155741700	155999700	2	neutral	AA	100	somatic	0	0.0232322808743525	0.0308131912085499
3	162794775	162907650	1	loss	A	-1	somatic	0	8.6880802756169e-19	0
3	163046325	163052775	1	loss	A	-1	germline	1	0.0153857284375907	0.0398998563227628
3	166832475	166903425	2	neutral	AA	100	somatic	0	0.781512895306761	0.860294662387424
3	183196125	183250950	2	neutral	AA	100	somatic	0	0.604996194034422	0.899759508026911
3	185331075	185363325	2	neutral	AA	54.5757	somatic	0	0.481944216827631	0.631191609706216
3	185453625	185456850	1	loss	A	-1	somatic	0	0.0833015745287196	0.270101101116757
3	191345700	191355375	1	loss	A	-1	somatic	0	0.00708290993799819	0.00961577549827741
3	191793975	191800425	1	loss	A	-1	somatic	0	0.0218370955103527	0.0499383315753348
3	193416150	193425825	1	loss	A	-1	somatic	0	0.00699802303656991	0.00947372444404204
3	193777350	193851525	2	neutral	AA	27.6769	somatic	0	0.00605139919174167	0.00617255314739873
3	196863675	196870125	2	neutral	AA	100	somatic	0	0.66954768271114	0.918908830118395
4	125775	135450	1	loss	A	-1	germline	1	0.0271214670680719	0.0597397561077263
4	554700	557925	4	gain	-	-1	germline	1	0.0832739767832543	0.270053173844556
4	10210350	10232925	1	loss	A	-1	germline	1	1.85508864102127e-05	6.20243474858118e-06
4	24364875	24371325	1	loss	A	-1	somatic	0	0.0272388727048471	0.0556961305670414
4	40293150	40296375	4	gain	-	-1	germline	1	0.0832716116068833	0.270049066081522
4	45024225	45027450	1	loss	A	-1	somatic	0	0.0832802841862915	0.270064128102303
4	49145775	49152225	76	gain	-	-1	germline	1	0.0143061271152802	0.0366314272929859
4	49652100	49655325	14	gain	-	-1	germline	1	0.0832653047359334	0.270038112269749
4	63200325	63203550	0	loss	-	-1	germline	1	0.0832708232268525	0.270047696837318
4	68579625	68582850	0	loss	-	-1	germline	1	0.0832653047359334	0.270038112269754
4	76245450	76258350	1	loss	A	-1	germline	1	0.000804256043441204	0.000946400368134981
4	97430475	97440150	1	loss	A	-1	somatic	0	0.00943958618581725	0.0209223707686862
4	106134750	106141200	1	loss	A	-1	germline	1	0.0252163846286394	0.0518648552525336
4	114255300	114261750	1	loss	A	-1	germline	1	0.0222241100351951	0.0528895507195704
4	115245375	115255050	1	loss	A	-1	germline	1	0.00450166320103075	0.0080298273518975
4	172502025	172511700	1	loss	A	-1	germline	1	0.00525940416219756	0.00938135311399546
4	179035875	179042325	1	loss	A	-1	germline	1	0.0231571451209413	0.0489565238880768
4	185518125	185524575	1	loss	A	-1	germline	1	0.0222107574930703	0.056227457485039
5	757875	764325	3	gain	-	-1	germline	1	0.0143098589996876	0.0366377957696099
5	3321750	3324975	4	gain	-	-1	somatic	0	0.0832747651874709	0.270054543109036
5	12809700	12822600	1	loss	A	-1	germline	1	0.0207386623415145	0.0565274892604551
5	17340825	17356950	1	loss	A	-1	germline	1	0.00032948317074041	0.000265964245668271
5	24306825	24313275	1	loss	A	-1	somatic	0	0.0233723695380912	0.0567160492037921
5	42628050	42631275	0	loss	-	-1	germline	1	0.0832668814173933	0.270040850692291
5	46269075	46275525	1	loss	A	-1	somatic	0	0.0266578083269469	0.0573750202705335
5	52909350	52912575	1	loss	A	-1	somatic	0	0.0835850764852504	0.270593056446277
5	58027425	58030650	0	loss	-	-1	germline	1	0.0832653047359334	0.270038112269754
5	84656250	84659475	0	loss	-	-1	germline	1	0.0832668814173933	0.270040850692291
5	86916975	86923425	1	loss	A	-1	germline	1	0.0193931808199038	0.0520607860549394
5	92341425	92347875	1	loss	A	-1	somatic	0	0.0212526534100587	0.0476178832112578
5	114919650	114926100	1	loss	A	-1	germline	1	0.0272753377300885	0.0560099658012364
5	118538100	118544550	1	loss	A	-1	germline	1	0.0143264763006351	0.0366895286739057
5	128071200	128077650	1	loss	A	-1	germline	1	0.0205129545413588	0.0558342256357905
5	137517225	137523675	1	loss	A	-1	somatic	0	0.0365106421147596	0.106933709178596
5	140842200	140861550	1	loss	A	-1	germline	1	0.000300842007157624	0.00027442004817313
5	146531100	146647200	2	neutral	AA	24.7082	somatic	0	0.252239915497899	0.245855378806089
5	150655875	150662325	2	neutral	AA	54.5678	somatic	0	0.315099464825851	0.400128897566119
5	150823575	150846150	1	loss	A	-1	germline	1	1.41024082688044e-05	7.5902511547099e-06
5	152336100	152349000	2	neutral	AA	100	germline	1	0.143783726762717	0.209512880768264
5	154825800	154832250	2	neutral	AA	54.5721	somatic	0	0.619476882085535	0.798899568060297
5	155644950	155648175	2	neutral	AA	100	germline	1	0.852211381041269	0.918988667399561
5	156564075	156567300	2	neutral	AA	100	somatic	0	0.89402718129281	0.933959086300681
5	158479725	158482950	2	neutral	AA	100	somatic	0	0.6616741743639	0.827635690860922
5	158828025	158847375	2	neutral	AA	54.5786	somatic	0	0.923771071104497	0.390712253718576
5	159463350	159473025	1	loss	A	-1	somatic	0	0.0126719831349507	0.0248901431700742
5	159898725	159901950	2	neutral	AA	100	somatic	0	0.408813177916443	0.646664192094802
5	163272075	163281750	2	neutral	AA	100	somatic	0	0.171002712444144	0.114023375716551
5	163797750	163836450	2	neutral	AA	36.7144	somatic	0	0.817062117119892	0.995581046371027
5	171924750	171934425	2	neutral	AA	37.6381	somatic	0	0.843807783762798	0.905810599651918
5	173543700	173550150	1	loss	A	-1	somatic	0	0.0284281940913003	0.055746803179422
5	177120225	177123450	2	neutral	AA	100	somatic	0	0.880592503392306	0.929338803681985
5	178584375	178587600	5	gain	AAABB	4.97526	germline	1	0.0832668814173933	0.270040850692286
5	180109800	180129150	2	neutral	AA	24.528	somatic	0	0.0644306793696337	0.232785925816925
5	180658050	180677400	2	neutral	AA	11.6109	somatic	0	0.974160901336996	0.91337213995314
5	181045050	181048275	5	gain	AAABB	45.2565	germline	1	0.0832692464849299	0.270044958364099
5	181061175	181070850	2	neutral	AA	27.7221	somatic	0	0.00768147125163987	0.0190691009714942
6	154800	170925	3	gain	-	-1	somatic	0	0.000785397546192299	0.00170965851106042
6	254775	258000	3	gain	AAB	24.9209	germline	1	0.0834215135600083	0.270309314441282
6	258000	380550	3	gain	AAB	0.419221	germline	1	2.7111055934556e-25	0
6	380550	383775	3	gain	AAB	19.4929	germline	1	0.0834215135600083	0.270309314441282
6	1896300	1928550	2	neutral	AA	14.199	somatic	0	0.00047532866524275	0.00148197883138501
6	11800275	11809950	2	neutral	AA	100	somatic	0	0.274162294663426	0.523714430742897
6	12893550	12935475	2	neutral	AA	21.8729	somatic	0	0.965255533972829	0.998444912404018
6	13141875	13148325	2	neutral	AA	54.5679	somatic	0	0.849100592456884	0.938850426529119
6	17002200	17044125	2	neutral	AA	27.2882	somatic	0	0.0981399043421167	0.166129524456182
6	19040400	19050075	1	loss	A	-1	germline	1	0.00559350450066718	0.00967632386474138
6	20278800	20369100	2	neutral	AA	100	somatic	0	0.341601284427014	0.522255165805093
6	20959275	20962500	4	gain	AABB	35.0832	germline	1	0.0832708232268525	0.270047696837313
6	26283750	26286975	2	neutral	AA	100	somatic	0	0.174921164702422	0.404427199246456
6	27767250	27773700	2	neutral	AA	12.1262	somatic	0	0.513092325871038	0.878793797742364
6	32488650	32575725	0	loss	-	-1	germline	1	4.69403779115747e-08	7.01189051266482e-09
6	32575725	32578950	3	gain	AAB	1.56471	somatic	0	0.0834223030954625	0.270310684653516
6	32578950	32666025	0	loss	-	-1	germline	1	1.6977390974224e-06	1.25657995431183e-06
6	35658825	35662050	0	loss	-	-1	germline	1	0.0832653047359334	0.270038112269754
6	39099900	39106350	1	loss	A	-1	somatic	0	0.0290881416525909	0.0565777191485843
6	53725275	53815575	2	neutral	AA	36.38	somatic	0	0.0908557669968792	0.101102989120639
6	54063900	54070350	1	loss	A	-1	somatic	0	0.0242166979941876	0.0534232264070834
6	54979800	54986250	1	loss	A	-1	somatic	0	0.0239793928868391	0.0561259434920357
6	60230100	60236550	3	gain	-	-1	germline	1	0.0143242970337993	0.0366809020876167
6	60236550	60239775	5	gain	-	-1	germline	1	0.0832668814173933	0.270040850692286
6	69340725	69524550	2	neutral	AA	62.3626	somatic	0	0.0145134840174728	0.147204153424815
6	73881525	73894425	1	loss	A	-1	germline	1	0.00154055408588753	0.00158468577791993
6	82676100	82730925	2	neutral	AA	29.4734	somatic	0	0.122734234477166	0.0211241505351666
6	85072275	85088400	2	neutral	AA	55.5926	somatic	0	0.57731473470156	0.795079556244391
6	86091375	86110725	2	neutral	AA	12.1262	somatic	0	0.170198378782489	0.667870463923946
6	87736125	87810300	2	neutral	AA	36.3786	germline	1	0.439433885142783	0.86437864498981
6	88884225	88906800	2	neutral	AA	100	somatic	0	0.351929216920228	0.231123290122816
6	91135275	91170750	2	neutral	AA	66.6729	somatic	0	0.0355728949071478	0.0329674845079369
6	93115425	93131550	2	neutral	AA	54.8387	somatic	0	0.526251436892377	0.713382949457743
6	94724700	94731150	2	neutral	AA	100	somatic	0	0.0706906857966361	0.116845469316023
6	95250375	95253600	1	loss	A	-1	somatic	0	0.0832936887026977	0.270087406976927
6	103290300	103316100	1	loss	A	-1	germline	1	1.16577090020222e-05	7.71199525262389e-06
6	107814975	107876250	2	neutral	AA	100	somatic	0	0.579503837893224	0.905539424238873
6	108853425	108876000	2	neutral	AA	100	somatic	0	0.220684280711619	0.426811429324588
6	112539600	112542825	2	neutral	AA	100	somatic	0	0.967333775012578	0.955883199875887
6	116954625	116977200	2	neutral	AA	100	somatic	0	0.859395240008437	0.942952629329905
6	117735075	117789900	2	neutral	AA	54.5678	somatic	0	0.458407868694573	0.651650256437836
6	118644525	118647750	5	gain	AAAAA	5.14378	germline	1	0.0832660930736402	0.270039481478483
6	119221800	119231475	2	neutral	AA	35.1597	somatic	0	0.931877124050137	0.565487262231061
6	119392725	119399175	2	neutral	AA	5.22928	somatic	0	0.243972728554783	0.277805179022533
6	121434150	121437375	2	neutral	AA	100	somatic	0	0.390698924546923	0.63091216066394
6	129232200	129261225	2	neutral	AA	36.4826	somatic	0	0.455573410748861	0.367760197294072
6	138368625	138387975	2	neutral	AA	100	somatic	0	0.0112484696934278	0.00922021024803787
6	144222000	144228450	2	neutral	AA	100	germline	1	0.196101500383959	0.195420540774604
6	147966225	148085550	2	neutral	AA	100	somatic	0	0.341321668231265	0.229308188734874
6	157312275	157315500	7	gain	AAAABBB	4.18308	germline	1	0.0832653047359334	0.270038112269749
6	157915350	157918575	2	neutral	AA	100	somatic	0	0.751230698239882	0.875385781265647
6	165310275	165319950	1	loss	A	-1	germline	1	0.0143873021138517	0.0368718509211658
6	166084275	166090725	1	loss	A	-1	somatic	0	0.0268081147649696	0.0561471018438086
6	169160925	169189950	2	neutral	AA	100	somatic	0	0.0867065003526911	0.22220140234605
7	903000	906225	4	gain	-	-1	germline	1	0.0832716116068833	0.270049066081522
7	9762075	9765300	0	loss	-	-1	somatic	0	0.0832653047359334	0.270038112269754
7	23994000	24000450	1	loss	A	-1	somatic	0	0.0206818829875808	0.0563264087486154
7	51525825	51532275	1	loss	A	-1	germline	1	0.0143691865790535	0.0368172593351961
7	52661025	52677150	4	gain	-	-1	germline	1	0.000107575861126896	9.08497806600961e-05
7	57411450	57417900	1	loss	A	-1	somatic	0	0.0177979767958127	0.0457252572579002
7	57485625	57498525	3	gain	-	-1	germline	1	0.000533151694460077	0.000673426990243309
7	58062900	58066125	4	gain	-	-1	somatic	0	0.083270034852868	0.270046327598172
7	61046025	61052475	4	gain	-	-1	somatic	0	0.0143086149428134	0.0366359225876993
7	61052475	61058925	3	gain	-	-1	somatic	0	0.0143247951261514	0.0366677780786018
7	61058925	61065375	1	loss	A	-1	somatic	0	0.0248460830773045	0.0562807203468794
7	62300550	62310225	3	gain	-	-1	somatic	0	0.00292976459074772	0.00575148648697388
7	62345700	62358600	1	loss	A	1.5239	somatic	0	0.00236696871217822	0.00209416584153344
7	62403750	62406975	5	gain	-	-1	somatic	0	0.0832692464849299	0.270044958364099
7	62439225	62455350	3	gain	AAB	2.49224	somatic	0	0.000109816769374333	9.3711271808794e-05
7	65225625	65228850	0	loss	-	-1	somatic	0	0.0832787072992524	0.27006138950746
7	65486850	65490075	4	gain	AAAA	5.89951	somatic	0	0.083275553597734	0.270055912378584
7	65796450	65822250	3	gain	AAB	0.178914	germline	1	9.8153675625072e-07	2.4159483580366e-07
7	67467000	67512150	2	neutral	AA	40.539	somatic	0	0.343707888301499	0.162237407712915
7	68163600	68250675	2	neutral	AA	0.998187	somatic	0	0.744429765518765	0.834589349900428
7	69608400	69618075	2	neutral	AA	100	somatic	0	0.385120284397328	0.409122415624381
7	69630975	69643875	2	neutral	AA	100	germline	1	0.974245100802927	0.632667405354886
7	76077750	76113225	2	neutral	AA	34.4333	somatic	0	0.250610001371908	0.250526077583849
7	90180675	90183900	0	loss	-	-1	somatic	0	0.083270034852868	0.270046327598177
7	100945725	100948950	2	neutral	AA	100	somatic	0	0.314429196257985	0.559845120837027
7	100948950	100955400	3	gain	AAB	0.76121	germline	1	0.0143130939941094	0.0366482871369576
7	100955400	100958625	11	gain	AAAAAAAAAAB	100	germline	1	0.0832653047359334	0.270038112269749
7	100958625	100961850	6	gain	AAABBB	2.94769	germline	1	0.0832653047359334	0.270038112269749
7	100961850	100971525	3	gain	AAB	1.14768	germline	1	0.00270221033205464	0.00496218297868312
7	103409625	103525725	2	neutral	AA	27.289	germline	1	0.414413034255917	0.732223233082156
7	110453025	110459475	2	neutral	AA	54.5777	germline	1	0.685949341441578	0.936523973319449
7	115896825	115909725	2	neutral	AA	100	somatic	0	0.738534927956118	0.984618342958397
7	122953125	122969250	2	neutral	AA	100	somatic	0	0.498315868656028	0.682415893875512
7	125991075	126045900	2	neutral	AA	24.1558	somatic	0	0.531086939428464	0.467041251203282
7	130015875	130131975	2	neutral	AA	36.5187	somatic	0	1.42318450340378e-05	0.000177851441973242
7	133760100	133789125	2	neutral	AA	42.6741	somatic	0	0.201936407861985	0.322296184420826
7	143847900	143851125	5	gain	AAABB	100	germline	1	0.0832668814173933	0.270040850692286
7	151281525	151291200	2	neutral	AA	17.9769	somatic	0	0.724715783134938	0.947497456274822
7	152394150	152416725	3	gain	AAB	1.07905	germline	1	0.00831542271642527	0.0383220811251406
7	153877650	153884100	2	neutral	AA	93.3772	somatic	0	0.0339709173268516	0.0687724224809719
7	157954050	157960500	2	neutral	AA	54.5678	somatic	0	0.522082096487867	0.905246489156442
8	645000	651450	1	loss	A	-1	somatic	0	0.0284682945275222	0.0569254619220467
8	2892825	3125025	2	neutral	AA	40.851	germline	1	0.00368690933253791	0.0284592579292217
8	5737275	5746950	1	loss	A	-1	germline	1	0.00465270453091999	0.00943085285592749
8	6111375	6114600	0	loss	-	-1	germline	1	0.0832684581230381	0.270043589135098
8	13996500	14019075	2	neutral	AA	100	somatic	0	0.522569662466276	0.46275086438028
8	36213525	36226425	2	neutral	AA	100	somatic	0	0.749525784699632	0.798233412243872
8	43237575	43240800	9	gain	AAAAAABBB	1.55341	germline	1	0.0832653047359334	0.270038112269749
8	43240800	43244025	4	gain	AAAA	5.75518	germline	1	0.0832723999929605	0.270050435330799
8	46369050	46372275	2	neutral	AA	100	somatic	0	0.580553594594969	0.777154088439358
8	49348950	49358625	2	neutral	AA	100	germline	1	0.755914587198855	0.871157376638303
8	61533000	61565250	2	neutral	AA	100	somatic	0	0.638429712410395	0.992419770795538
8	93737850	93753975	2	neutral	AA	54.5678	somatic	0	0.249986467044794	0.344853209505759
8	98417325	98430225	2	neutral	AA	100	somatic	0	0.691555624667784	0.970566018393872
8	102042225	102058350	2	neutral	AA	100	somatic	0	0.26182996859343	0.402225760781341
8	111281850	111285075	0	loss	-	-1	germline	1	0.0832653047359334	0.270038112269754
8	111285075	111291525	2	neutral	AA	100	somatic	0	0.866533192407536	0.734185517293163
8	111394725	111555975	2	neutral	AA	36.4139	germline	1	0.23185635272918	0.472163750179604
8	119273400	119412075	2	neutral	AA	56.5616	somatic	0	0.0670677524466521	0.171729615052858
8	123827100	123836775	1	loss	A	-1	somatic	0	0.00711000240623009	0.00952504491623007
8	141551700	141622650	2	neutral	AA	8.14737	somatic	0	0.00024163089788818	0.00666351336626025
8	142396650	142522425	2	neutral	AA	7.95077	germline	1	0.000179443188376645	8.85358773892175e-05
8	144125250	144128475	5	gain	AAAAB	18.2079	germline	1	0.0832653047359334	0.270038112269749
8	144231675	144251025	2	neutral	AA	40.9912	somatic	0	0.425918965413798	0.498169040495605
9	399900	441825	2	neutral	AA	7.29861	somatic	0	1.17513930742233e-05	2.76175096788345e-05
9	561150	574050	2	neutral	AA	54.5681	somatic	0	0.0344218164777697	0.0463459033415385
9	5385750	5405100	1	loss	A	-1	germline	1	0.00162220665489056	0.00163023312574639
9	12222750	12274350	2	neutral	AA	20.0188	somatic	0	0.973422374685734	0.951070318340418
9	16905450	16931250	2	neutral	AA	36.3789	somatic	0	0.487099416977588	0.820926457807039
9	18546975	18556650	2	neutral	AA	54.5685	somatic	0	0.315800391542801	0.34357274611418
9	18740475	18756600	2	neutral	AA	100	somatic	0	0.20385158576859	0.392932403852582
9	40912350	40915575	7	gain	-	-1	germline	1	0.0832653047359334	0.270038112269749
9	40922025	40928475	6	gain	AAAABB	0.814913	germline	1	0.0143061271152802	0.0366314272929859
9	71517600	71556300	2	neutral	AA	44.1701	somatic	0	0.128614344497013	0.13641642303506
9	74000850	74084700	2	neutral	AA	41.7627	somatic	0	0.0990643344939286	0.163079141139277
9	77641875	77658000	2	neutral	AA	54.5787	somatic	0	0.751249994561542	0.639760189965083
9	91689975	91715775	2	neutral	AA	33.6258	germline	1	0.741488002940642	0.410354087098514
9	97401450	97794900	2	neutral	AA	21.8272	germline	1	0.0881054359290035	0.0534558742373431
9	98546325	98549550	0	loss	-	-1	germline	1	0.0832668814173933	0.270040850692291
9	98659200	98688225	2	neutral	AA	100	germline	1	0.573839613552501	0.323135563118784
9	102945225	103045200	2	neutral	AA	54.6174	somatic	0	0.393966935597297	0.463650898397885
9	107605350	107721450	2	neutral	AA	12.9656	somatic	0	0.0136879323598592	0.0397315566939744
9	108192300	108466425	2	neutral	AA	11.2463	somatic	0	0.000125303745069744	0.000196724118798675
9	126755400	126768300	2	neutral	AA	54.6578	somatic	0	0.00879152570625433	0.00855135459642431
9	127474575	127516500	2	neutral	AA	21.8342	somatic	0	0.349236527211485	0.3730728714208
9	127877700	127884150	2	neutral	AA	36.3791	somatic	0	0.0905541986342913	0.17239683594338
9	128687175	128690400	1	loss	A	-1	somatic	0	0.124115275532562	0.335037799443093
9	128690400	128722650	2	neutral	AA	21.83	somatic	0	0.0429137565568528	0.201651824082295
9	129425700	129441825	3	gain	AAB	0.288412	germline	1	0.000108910041317205	9.21357337638762e-05
9	131431650	131438100	2	neutral	AA	36.3786	somatic	0	0.103012993582453	0.227473805736882
10	31153500	31156725	1	loss	A	-1	somatic	0	0.0875743179076703	0.277442969922472
10	38483925	38490375	4	gain	-	-1	germline	1	0.0143128451254831	0.0366482871369576
10	38490375	38525850	3	gain	-	-1	germline	1	1.14502559432939e-08	2.19006202062388e-09
10	38525850	38529075	17	gain	-	-1	germline	1	0.0832653047359334	0.270038112269749
10	38577450	38580675	5	gain	-	-1	germline	1	0.0832668814173933	0.270040850692286
10	38580675	38835450	3	gain	-	-1	somatic	0	1.96818147750699e-13	7.57172102794357e-14
10	39257925	39267600	1	loss	A	-1	somatic	0	0.00391160501934092	0.00759300965986365
10	39341775	39361125	1	loss	A	-1	germline	1	0.000385629072672785	0.000315924313461502
10	41857275	41899200	34	gain	AAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBB	19.7302	germline	1	0.000532029583046182	0.0006709526999229
10	42299100	42321675	3	gain	AAB	1.07332	germline	1	4.63584529632502e-06	1.68971919844996e-06
10	46082025	46094925	2	neutral	AA	54.5678	somatic	0	0.841008987328817	0.690921929499361
10	46514175	46559325	6	gain	AAAAAB	1.34287	germline	1	1.97380440954356e-09	7.55351337033972e-11
10	46991475	47049525	2	neutral	AA	100	germline	1	0.21419320382603	0.256371431073489
10	47372025	47384925	2	neutral	AA	1.64224	somatic	0	0.313131995563027	0.541901759613399
10	54728250	54760500	2	neutral	AA	54.579	somatic	0	0.541248405319116	0.921795352632475
10	55234575	55237800	2	neutral	AA	100	somatic	0	0.188461359056582	0.421436145221241
10	55547400	55557075	2	neutral	AA	100	somatic	0	0.49927977706737	0.283817601509284
10	57179250	57185700	2	neutral	AA	1.66257	somatic	0	0.396913944951909	0.51334785446691
10	57472725	57501750	2	neutral	AA	100	somatic	0	0.300548237962833	0.533548770709958
10	58304775	58320900	2	neutral	AA	36.3786	somatic	0	0.60187076697019	0.671753509213049
10	59868900	59885025	2	neutral	AA	17.5992	somatic	0	0.422682099342718	0.682637888807154
10	59985000	60001125	2	neutral	AA	100	somatic	0	0.864343149484877	0.998044762475066
10	60410700	60426825	2	neutral	AA	100	somatic	0	0.354843026203608	0.501680771602749
10	60565500	60568725	2	neutral	AA	100	somatic	0	0.111028112803619	0.315351605862032
10	60588075	60594525	2	neutral	AA	100	somatic	0	0.0941348378618439	0.245097947344559
10	62368275	62371500	1	loss	A	-1	somatic	0	0.089263276929612	0.280303617001297
10	63113250	63126150	2	neutral	AA	54.5681	somatic	0	0.590190097885308	0.896799496172046
10	63571200	63577650	2	neutral	AA	100	somatic	0	0.128228729903648	0.36378283367651
10	64371000	64374225	2	neutral	AA	100	somatic	0	0.393009296841699	0.632998808494778
10	65544900	65554575	1	loss	A	-1	somatic	0	0.00474568378699837	0.00972638854157126
10	65670675	65715825	2	neutral	AA	100	germline	1	0.2371484124684	0.114419303856539
10	67725000	67728225	1	loss	A	-1	somatic	0	0.0838725311900325	0.271091157478471
10	68186175	68208750	2	neutral	AA	37.3456	somatic	0	0.827570784607576	0.744987735274098
10	69469725	69479400	1	loss	A	-1	somatic	0	0.00654675141393104	0.0095360847564373
10	72423825	72427050	2	neutral	AA	100	somatic	0	0.54197996960245	0.750719458086344
10	73613850	73620300	1	loss	A	-1	germline	1	0.0153724055182183	0.0394888062862679
10	80731425	80737875	2	neutral	AA	54.5683	somatic	0	0.791693176563844	0.9442488995904
10	92496225	92709075	2	neutral	AA	88.9483	somatic	0	0.00626766025992932	0.00654808407687979
10	92709075	92734875	2	neutral	AA	44.9439	somatic	0	0.530832943628544	0.351956155426564
10	92812275	92825175	2	neutral	AA	100	somatic	0	0.204991230400471	0.242401524924526
10	95647050	95650275	2	neutral	AA	100	somatic	0	0.160800916802618	0.386115070133208
10	98930100	98936550	1	loss	A	-1	somatic	0	0.0205507791252586	0.0493299457365166
10	100929600	100936050	2	neutral	AA	100	somatic	0	0.360458393843848	0.810919043389325
10	103248375	103251600	3	gain	AAB	11.3706	somatic	0	0.0832944772580867	0.270088776368099
10	105280125	105289800	2	neutral	AA	36.379	somatic	0	0.654843912800741	0.870761603114168
10	105492975	105518775	2	neutral	AA	100	somatic	0	0.759088781661153	0.429632308989213
10	108637350	108653475	2	neutral	AA	100	germline	1	0.761528429433674	0.934337233125018
10	111684975	111691425	2	neutral	AA	58.9382	somatic	0	0.0609015943810594	0.114184233669662
10	112068750	112075200	2	neutral	AA	36.4385	somatic	0	0.825069885040038	0.743047382452511
10	112352550	112359000	1	loss	A	-1	somatic	0	0.0232667783027636	0.0549482391062799
10	115338900	115342125	2	neutral	AA	100	somatic	0	0.328655060804022	0.573762641508112
10	116390250	116574075	2	neutral	AA	42.6387	somatic	0	0.645064407895899	0.445722479798016
10	116983650	117015900	2	neutral	AA	100	germline	1	0.308883989348901	0.311458281624598
10	118841250	118886400	2	neutral	AA	37.968	somatic	0	0.465363982533771	0.640306270296825
10	119234700	119237925	2	neutral	AA	100	somatic	0	0.9725201203069	0.95722843398291
10	119318550	119341125	2	neutral	AA	100	somatic	0	0.0161859213568559	0.0124606489673231
10	120811725	120876225	2	neutral	AA	36.4478	somatic	0	0.998793364006015	0.777844967125959
10	121608300	121611525	2	neutral	AA	100	germline	1	0.584275862689028	0.779602794057072
10	123178875	123182100	2	neutral	AA	100	somatic	0	0.270390539849904	0.514901732195257
10	123230475	123233700	2	neutral	AA	100	somatic	0	0.395529831680511	0.635161395447831
10	124830075	124833300	2	neutral	AA	100	somatic	0	0.151256266265438	0.373330671081304
10	128461425	128464650	4	gain	AAAA	17.5723	germline	1	0.0832739767832543	0.270053173844556
10	129193500	129225750	2	neutral	AA	48.712	somatic	0	0.315041844045375	0.287857402495223
10	130989825	130993050	2	neutral	AA	100	somatic	0	0.364970794411232	0.60784822950437
10	131621925	131625150	1	loss	A	-1	somatic	0	0.0835566121182334	0.27054369440807
10	132363675	132366900	5	gain	AAAAB	29.4492	germline	1	0.0832692464849299	0.270044958364099
10	133315050	133321500	1	loss	A	-1	somatic	0	0.0350443596506594	0.0958576068119692
11	1254525	1344825	2	neutral	AA	100	somatic	0	0.000131280487877512	0.000962945077949473
11	3121800	3131475	2	neutral	AA	36.3786	somatic	0	0.0550222642472063	0.125138670787156
11	3879675	3886125	2	neutral	AA	54.5678	somatic	0	0.611260156419201	0.81539036826539
11	6711225	6714450	2	neutral	AA	100	somatic	0	0.174987340941619	0.40452241134033
11	11239125	11258475	2	neutral	AA	20.6798	somatic	0	0.383119836274134	0.334216590252953
11	12487200	12496875	2	neutral	AA	100	somatic	0	0.492931396584599	0.805679082807868
11	13093500	13099950	2	neutral	AA	100	somatic	0	0.939409884758482	0.709881058515596
11	14344800	14348025	2	neutral	AA	100	somatic	0	0.800132121153755	0.897804266384855
11	14812425	14841450	2	neutral	AA	95.9055	somatic	0	0.202113851170382	0.295177396694465
11	17682675	17695575	2	neutral	AA	100	somatic	0	0.532461085861913	0.4801335827411
11	25019550	25051800	2	neutral	AA	36.3786	somatic	0	0.158910665063207	0.0913855937110415
11	26493375	26499825	2	neutral	AA	100	somatic	0	0.955369798617684	0.951377506702286
11	27241575	27702750	2	neutral	AA	33.0493	somatic	0	0.0459472491071299	0.10213021720949
11	34820325	34836450	2	neutral	AA	100	somatic	0	0.840232795385279	0.964120628534942
11	36832725	36845625	2	neutral	AA	100	somatic	0	0.0703132515018381	0.235116878862477
11	39751350	39831975	2	neutral	AA	27.2963	somatic	0	0.377986267178825	0.143718151803833
11	40215750	40248000	2	neutral	AA	36.3882	somatic	0	0.54495927963981	0.741918567388829
11	45933675	45991725	2	neutral	AA	39.0427	somatic	0	0.163851677633138	0.310198804051174
11	47039850	47043075	1	loss	A	-1	germline	1	0.0832865919763202	0.270075082684387
11	47584875	47601000	2	neutral	AA	100	somatic	0	0.926229159122675	0.942101311551772
11	48158925	48323400	2	neutral	AA	36.5506	somatic	0	0.109541879609074	0.190759835946956
11	48581400	48584625	1	loss	A	-1	somatic	0	0.113594279552093	0.319277768849606
11	48710400	48716850	1	loss	A	-1	somatic	0	0.0270294180451271	0.0627226058867187
11	48794250	48942600	2	neutral	AA	0.958311	somatic	0	2.75424468345388e-07	2.53988264820038e-06
11	50755050	50793750	2	neutral	AA	68.1902	somatic	0	7.94722664542215e-07	7.34477517216892e-06
11	62210250	62239275	3	gain	AAB	1.36316	germline	1	2.04829051907384e-07	3.09337688797484e-08
11	62503725	62532750	2	neutral	AA	36.3851	somatic	0	0.829729643731558	0.838272300986151
11	62861700	62874600	1	loss	A	-1	germline	1	0.000952430670189915	0.0014468655249168
11	63632475	63635700	2	neutral	AA	100	somatic	0	0.310153134190505	0.555638334901505
11	66041550	66057675	2	neutral	AA	100	somatic	0	0.150970921745002	0.398339165799377
11	67212225	67392825	2	neutral	AA	82.2695	somatic	0	0.131235441382528	0.152452618860707
11	75116700	75119925	2	neutral	AA	100	somatic	0	0.51512798846272	0.731338292452835
11	77051700	77067825	2	neutral	AA	100	somatic	0	0.914838826765072	0.922765160426176
11	78367500	78409425	2	neutral	AA	54.5678	somatic	0	0.254335772551188	0.0994317229072003
11	80641125	80766900	2	neutral	AA	36.5174	germline	1	0.925492180955192	0.827604756904929
11	92186625	92189850	2	neutral	AA	100	somatic	0	0.450297711267117	0.681234434561604
11	93286350	93296025	1	loss	A	-1	germline	1	0.00511043870259166	0.00886898920110168
11	101377875	101419800	2	neutral	AA	100	somatic	0	0.356119900002707	0.477186760864137
11	104396475	104402925	1	loss	A	-1	somatic	0	0.0194894078413538	0.0522946020262471
11	104883450	104893125	2	neutral	AA	28.9943	somatic	0	0.979427824972415	0.890648739670449
11	106173450	106196025	2	neutral	AA	56.8655	somatic	0	0.628800433419168	0.582692326503191
11	107369925	107373150	1	loss	A	-1	somatic	0	0.0872148381947979	0.276831835771421
11	114103725	114148875	2	neutral	AA	100	somatic	0	0.108953097687524	0.336921422915506
11	123172425	123185325	2	neutral	AA	100	somatic	0	0.0315172980114511	0.0432912938688035
11	126368400	126381300	3	gain	AAB	7.94971	germline	1	0.00270184749575461	0.00496096536629276
11	131263950	131267175	1	loss	A	-1	somatic	0	0.0877246933178449	0.277698595830947
12	2254275	2257500	5	gain	-	-1	germline	1	0.0832668814173933	0.270040850692286
12	30440775	30447225	4	gain	-	-1	germline	1	0.0143093613654886	0.0366366718504082
12	33146550	33156225	1	loss	A	-1	somatic	0	0.00644939559250129	0.00995868859749527
12	37616400	37622850	1	loss	A	-1	germline	1	0.0238455449089118	0.0530784744113102
12	37693800	37742175	2	neutral	AA	4.93004	somatic	0	4.66509408722482e-06	7.40367335105852e-06
12	48639450	48649125	2	neutral	AA	54.5679	germline	1	0.377237671725033	0.524369093936319
12	50110050	50122950	2	neutral	AA	100	germline	1	0.33435041792562	0.40238308686634
12	55773150	55776375	2	neutral	AA	100	somatic	0	0.969764384740374	0.956519507827102
12	57624300	57698475	2	neutral	AA	43.7916	somatic	0	0.819497481583111	0.704187813979805
12	59281950	59285175	0	loss	-	-1	germline	1	0.0832653047359334	0.270038112269754
12	59356125	59591550	2	neutral	AA	2.07613	germline	1	0.48264520129715	0.424630373195456
12	65467500	65490075	2	neutral	AA	37.9408	somatic	0	0.34486607698836	0.334475416060415
12	71208000	71211225	1	loss	A	-1	somatic	0	0.0832913230728143	0.270083298833802
12	75929400	76000350	2	neutral	AA	55.2571	somatic	0	0.953561600472321	0.613639937171947
12	81679575	81705375	2	neutral	AA	37.3173	somatic	0	0.322454473769071	0.494115026068573
12	91944750	91957650	2	neutral	AA	100	somatic	0	0.279042676121328	0.557961063575243
12	95653500	95992125	2	neutral	AA	16.511	somatic	0	0.0712179679003633	0.0297887324272852
12	105354300	105383325	2	neutral	AA	28.4924	somatic	0	0.729468409786452	0.717218063247938
12	111027075	111036750	2	neutral	AA	54.5678	somatic	0	0.439298693156718	0.431283742567877
12	112381575	112836300	2	neutral	AA	100	somatic	0	0.826317379342261	0.646279609934755
12	120985875	121008450	2	neutral	AA	36.3786	germline	1	0.436227293407132	0.32974413807151
12	132237900	132241125	4	gain	AABB	11.7115	germline	1	0.0832723999929605	0.270050435330799
13	20736750	20791575	2	neutral	AA	100	somatic	0	0.884414396006514	0.963159450504613
13	21059250	21085050	2	neutral	AA	100	somatic	0	0.158837424998597	0.276314924151755
13	22020300	22023525	0	loss	-	-1	germline	1	0.0832668814173933	0.270040850692291
13	22320225	22326675	2	neutral	AA	100	somatic	0	0.0855279992931798	0.163826827452181
13	26796525	26809425	2	neutral	AA	20.4114	somatic	0	0.918693244446263	0.994872499818864
13	26967450	26973900	2	neutral	AA	12.9552	germline	1	0.318160502265821	0.38773488394595
13	27209325	27212550	2	neutral	AA	100	somatic	0	0.444475099664645	0.676569931068088
13	29095950	29099175	2	neutral	AA	100	somatic	0	0.522831554316465	0.737019492957425
13	42695775	42779625	2	neutral	AA	100	somatic	0	0.310781682814718	0.676786694755917
13	48410475	48500775	2	neutral	AA	54.5679	somatic	0	0.0464017061085021	0.0345648605744591
13	50493825	50497050	1	loss	A	-1	germline	1	0.0857331006675386	0.27429871176496
13	54347700	54350925	2	neutral	AA	100	somatic	0	0.845016166846433	0.916248756793687
13	54641175	54654075	2	neutral	AA	97.715	somatic	0	0.293837402228434	0.305063642220635
13	63022950	63058425	3	gain	AAB	0.302875	germline	1	1.79373052505277e-08	1.60155581019339e-08
13	63058425	63064875	4	gain	AAAB	2.94556	germline	1	0.0143098589996876	0.0366392943754718
13	63064875	63068100	6	gain	AAAABB	0.665741	germline	1	0.0832653047359334	0.270038112269749
13	65357850	65373975	2	neutral	AA	100	somatic	0	0.0978755466675501	0.185223842384694
13	67370250	67373475	2	neutral	AA	100	somatic	0	0.326809019698213	0.571940393061061
13	69202050	69218175	2	neutral	AA	100	somatic	0	0.694182728400956	0.97301343389477
13	76222875	76226100	2	neutral	AA	100	somatic	0	0.907562516867331	0.938401327105229
13	77061375	77080725	2	neutral	AA	100	somatic	0	0.087206131831768	0.0785478497333775
13	77529000	77832150	2	neutral	AA	100	somatic	0	0.0506782339424056	0.0696685826844002
13	81231300	81237750	1	loss	A	-1	germline	1	0.0202209612711275	0.0513310812125177
13	83256600	83259825	2	neutral	AA	100	somatic	0	0.316296668615034	0.561681122792268
13	97911000	97917450	2	neutral	AA	54.5679	somatic	0	0.240617588515252	0.355380290001267
13	100203975	100294275	2	neutral	AA	49.2428	somatic	0	0.990399744098236	0.968756552337354
13	104299725	104302950	2	neutral	AA	100	somatic	0	0.666929930361011	0.830670331787503
13	109021125	109024350	1	loss	A	-1	somatic	0	0.0890416821332846	0.279929591950001
13	109214625	109221075	1	loss	A	-1	somatic	0	0.0293019700403367	0.0565777191485842
13	109462950	109472625	2	neutral	AA	28.2479	somatic	0	0.464107177392521	0.873202172470046
13	110401425	110404650	2	neutral	AA	100	somatic	0	0.0888437889593649	0.279596647612816
13	110424000	110459475	2	neutral	AA	100	somatic	0	0.0115623498518366	0.0235904131066228
13	112655700	112681500	2	neutral	AA	12.1843	somatic	0	0.00045887544796274	0.00451105267605545
13	112871775	112875000	3	gain	AAB	21.5778	somatic	0	0.0832826495622009	0.27006823603257
14	0	18488925	4	gain	AAAB	-1	somatic	0	0.0832653047359334	0.270038112269749
14	18488925	19924050	4	gain	AAAB	0.950138	somatic	0	4.52626222907622e-23	0
14	19924050	19956300	4	gain	AABB	1.32344	germline	1	9.64151647478963e-07	2.25245334828372e-07
14	20891550	20952825	1	loss	A	-1	germline	1	1.35768023526428e-07	2.23884898398197e-08
14	28744425	29528100	2	neutral	AA	12.0461	germline	1	0.151820775635563	0.438970820331203
14	32166150	32191950	2	neutral	AA	100	somatic	0	0.384190502272659	0.535008192907363
14	32933700	32940150	2	neutral	AA	54.5704	somatic	0	0.280930402885944	0.705546761010969
14	35136375	35146050	1	loss	A	-1	germline	1	0.00343443515164255	0.00662122194833681
14	35213775	35217000	2	neutral	AA	100	germline	1	0.398163946423064	0.637449472422062
14	36474750	36571500	2	neutral	AA	77.7096	somatic	0	0.60528386940049	0.695862771267909
14	40967175	40976850	1	loss	A	-1	germline	1	0.00489244077709159	0.00882436062210801
14	41376750	41405775	2	neutral	AA	100	somatic	0	0.591319983460184	0.932400464715121
14	48020250	48023475	2	neutral	AA	100	somatic	0	0.137067420518352	0.353698819312331
14	52741650	52754550	2	neutral	AA	82.6191	somatic	0	0.678212109922241	0.939153344225106
14	68195850	68199075	2	neutral	AA	100	somatic	0	0.0883501927222346	0.278763436143151
14	69195600	69247200	2	neutral	AA	100	somatic	0	0.787027810495162	0.748353054192273
14	72088425	72091650	2	neutral	AA	100	germline	1	0.336420440140583	0.581162826903067
14	74984475	75155400	2	neutral	AA	36.3786	somatic	0	0.659798575848647	0.973551332704322
14	76558275	76577625	2	neutral	AA	100	somatic	0	0.744706201612849	0.657819101462295
14	76858200	76916250	2	neutral	AA	100	germline	1	0.57598413947267	0.937264628928981
14	80508900	80534700	2	neutral	AA	54.5693	somatic	0	0.158152955734893	0.102152317832751
14	84511125	84514350	2	neutral	AA	100	germline	1	0.506123283860412	0.724672653044366
14	90283875	90293550	2	neutral	AA	100	somatic	0	0.978505135710942	0.962949704745139
14	91138500	91157850	2	neutral	AA	36.432	somatic	0	0.941067876755062	0.971666276724331
14	92018925	92022150	2	neutral	AA	100	germline	1	0.258993275938129	0.502730793643842
14	99330000	99365475	2	neutral	AA	26.8841	somatic	0	0.966592467743612	0.84516211296493
14	99926625	99929850	4	gain	AABB	17.0352	somatic	0	0.0832716116068833	0.270049066081522
14	101722950	101726175	1	loss	A	-1	somatic	0	0.0894038777271017	0.28054143667443
14	105296250	105489750	2	neutral	AA	26.6897	somatic	0	4.31372519875517e-07	0.0001828491452468
15	0	17079600	7	gain	-	-1	germline	1	NA	NA
15	17079600	17082825	16	gain	-	-1	germline	1	0.0832653047359334	0.270038112269749
15	17082825	20340075	7	gain	-	-1	germline	1	0.899298184543436	0.948706230708105
15	20340075	20343300	16	gain	-	-1	germline	1	0.0832653047359334	0.270038112269749
15	20343300	20672250	7	gain	-	-1	germline	1	1.97127835362904e-11	1.87294624254264e-13
15	22223475	22226700	3	gain	AAB	7.41852	germline	1	0.0832999973151356	0.270098362248242
15	22226700	22271850	4	gain	AAAB	3.45514	germline	1	2.21017133961795e-05	1.2294080734554e-05
15	25525875	25529100	3	gain	AAB	4.62001	somatic	0	0.0832976315401159	0.270094253983487
15	27306075	27309300	1	loss	A	-1	germline	1	0.0832826495622009	0.270068236032575
15	27841425	27851100	2	neutral	AA	10.5456	germline	1	0.369727410018503	0.73697757663632
15	34436550	34520400	1	loss	A	-1	germline	1	1.05301632214791e-16	0
15	42134625	42141075	2	neutral	AA	100	somatic	0	0.542506362085254	0.853561713654841
15	44098650	44101875	2	neutral	AA	100	somatic	0	0.283320458814445	0.528475272066871
15	50439000	50458350	2	neutral	AA	100	somatic	0	0.264163095830254	0.252081434954944
15	53309250	53335050	2	neutral	AA	54.6519	somatic	0	0.378880202084883	0.212166308861937
15	53783325	53812350	2	neutral	AA	93.3123	germline	1	0.500424283925305	0.527773164014848
15	58994925	59004600	2	neutral	AA	100	somatic	0	0.105339660792611	0.0909172433506189
15	60123675	60149475	2	neutral	AA	54.6458	somatic	0	0.188232984322405	0.306803540759276
15	64364550	64393575	2	neutral	AA	100	germline	1	0.0316921819571433	0.021600929958644
15	66734925	66780075	2	neutral	AA	100	somatic	0	0.35080013630059	0.187209309504449
15	68112000	68115225	2	neutral	AA	54.5678	somatic	0	0.0875771919882675	0.277452744828944
15	68831175	68834400	2	neutral	AA	100	germline	1	0.188550647902332	0.421550244572589
15	71785275	71827200	2	neutral	AA	100	somatic	0	0.778042355966301	0.486399071370384
15	72023925	72027150	2	neutral	AA	100	somatic	0	0.956702621037815	0.953036509156257
15	72091650	72098100	1	loss	A	-1	somatic	0	0.0269019956475709	0.056052214152712
15	74484600	74491050	2	neutral	AA	54.5679	somatic	0	0.681432464153114	0.815374193707334
15	74713575	74716800	1	loss	A	-1	somatic	0	0.0871596080064229	0.276737043996488
15	75535950	75610125	2	neutral	AA	27.2888	somatic	0	0.0021644692105553	0.000172505648920351
15	76509900	76513125	2	neutral	AA	100	somatic	0	0.17348889758884	0.40261533568604
15	78657750	78664200	2	neutral	AA	8.8584	somatic	0	0.195132095621002	0.211352951446202
15	78819000	78822225	2	neutral	AA	100	germline	1	0.330401134028152	0.575440440987433
15	90171000	90212925	2	neutral	AA	100	somatic	0	0.451627738046115	0.630989344319832
15	99030075	99033300	1	loss	A	-1	somatic	0	0.12291968564726	0.333275497132455
15	99875025	99881475	1	loss	A	-1	germline	1	0.0290566334109196	0.0563084559322221
15	100100775	100142700	2	neutral	AA	36.5144	somatic	0	0.0389140285198448	0.198315947583255
15	100242675	100255575	2	neutral	AA	36.3861	somatic	0	0.377204783554977	0.311773479149346
15	100665150	100668375	2	neutral	AA	100	somatic	0	0.631352543156135	0.809598298306353
15	100765125	100781250	2	neutral	AA	21.8272	somatic	0	0.153965719402485	0.216025289405828
15	101851950	101858400	3	gain	-	-1	somatic	0	0.0143660652452094	0.0367401987781478
16	35475	38700	3	gain	-	-1	somatic	0	0.0842570485558841	0.27175633159658
16	1022325	1025550	3	gain	AAB	12.4676	germline	1	0.0832763420140437	0.2700572816532
16	2380050	2444550	2	neutral	AA	54.5678	somatic	0	0.231160334993579	0.388581677847203
16	5147100	5176125	2	neutral	AA	24.1301	somatic	0	0.0304557164037602	0.0953136142547777
16	7730325	7736775	2	neutral	AA	100	somatic	0	0.598721436150075	0.93686053077211
16	8065725	8178600	2	neutral	AA	46.2524	somatic	0	0.377179450131575	0.282257106932848
16	13632075	13651425	2	neutral	AA	47.8929	somatic	0	0.210054799224347	0.16265034414644
16	13715925	13732050	2	neutral	AA	54.5678	somatic	0	0.936749412826551	0.736868659249024
16	19021050	19059750	2	neutral	AA	54.5678	somatic	0	0.403229649080241	0.440894641959441
16	21559125	21581700	3	gain	AAB	3.71165	germline	1	4.6163141033884e-06	1.67299648567987e-06
16	22613700	22697550	3	gain	AAB	1.46304	germline	1	5.06205941940476e-18	0
16	25035675	25038900	2	neutral	AA	100	somatic	0	0.649226709528487	0.820359760782887
16	28144575	28238100	2	neutral	AA	31.0618	somatic	0	0.062760516768627	0.0523545943683656
16	28602525	28605750	4	gain	AAAB	51.1774	germline	1	0.0832747651874709	0.270054543109036
16	34062450	34065675	26	gain	AAAAAAAAAAAAAAAAABBBBBBBBB	14.306	germline	1	0.0832653047359334	0.270038112269749
16	34068900	34072125	4	gain	AAAA	9.60107	germline	1	0.0832723999929605	0.270050435330799
16	34075350	34085025	3	gain	AAB	21.7476	germline	1	0.00272472477516911	0.00499064631484247
16	34085025	34088250	13	gain	AAAAAAAAABBBB	100	germline	1	0.0832653047359334	0.270038112269749
16	34088250	34094700	2	neutral	AA	21.8271	germline	1	0.0436056934886293	0.129659209439684
16	34094700	34101150	7	gain	AAAAABB	1.87349	germline	1	0.0143061271152802	0.0366314272929859
16	34101150	34210800	2	neutral	AA	2.99609	germline	1	0.00196670852338041	0.0027262272764802
16	34210800	34214025	4	gain	AABB	5.35955	somatic	0	0.0832723999929605	0.270050435330799
16	34214025	34220475	2	neutral	AA	-1	germline	1	NA	NA
16	34243050	34255950	3	gain	-	-1	somatic	0	0.000532568447567347	0.000671680354247139
16	34255950	34597800	2	neutral	AA	-1	germline	1	NA	NA
16	34597800	34959000	2	neutral	AA	0.707576	germline	1	1.08505958190061e-23	0
16	35987775	36087750	2	neutral	AA	5.43427	germline	1	1.61194553179421e-07	1.57678749124202e-06
16	36123225	36126450	5	gain	-	-1	germline	1	0.0832660930736402	0.270039481478483
16	46401300	46404525	50	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3.40974	germline	1	0.0832653047359334	0.270038112269749
16	46404525	46469025	2	neutral	AA	0.779782	germline	1	2.9707492467506e-05	2.40235569326508e-05
16	64474200	64483875	2	neutral	AA	100	somatic	0	0.864430856436871	0.97511399958929
16	70150200	70163100	3	gain	AAB	4.13363	germline	1	0.000532629813967502	0.000672243764101133
16	73655775	73662225	1	loss	A	-1	somatic	0	0.0266773069117945	0.0583584133510555
16	76503450	76509900	1	loss	A	-1	somatic	0	0.0242103908322988	0.0572689683728239
16	85810800	85823700	2	neutral	AA	54.5678	germline	1	0.337585819681348	0.554728826280368
16	88077975	88081200	1	loss	A	-1	germline	1	0.0832984201257417	0.270095623400009
16	89887200	89942025	2	neutral	AA	9.2237	germline	1	0.00336834714891089	0.0429484675949413
17	20088525	20124000	2	neutral	AA	100	somatic	0	0.820422977013448	0.714269183079554
17	21288225	21304350	4	gain	AABB	0.283124	germline	1	0.000107573238013709	9.08637167951198e-05
17	21855825	21859050	6	gain	-	-1	somatic	0	0.0832653047359334	0.270038112269749
17	21859050	21871950	3	gain	-	-1	somatic	0	0.000534601419888841	0.000674722517057136
17	21871950	21884850	4	gain	-	-1	somatic	0	0.000532498322605774	0.000672037587169938
17	21884850	21923550	3	gain	-	-1	somatic	0	2.0218406807401e-09	7.97867327761992e-11
17	21975150	21978375	27	gain	-	-1	germline	1	0.0832653047359334	0.270038112269749
17	21978375	22158975	6	gain	AAAABB	0.32826	germline	1	4.2395873027708e-10	1.02226005438411e-11
17	26783625	26796525	4	gain	-	-1	germline	1	0.000532252952990906	0.000671144838641835
17	26796525	26806200	3	gain	-	-1	germline	1	0.00271785447633782	0.00499317171057378
17	26812650	26819100	4	gain	-	-1	germline	1	0.0143079929501543	0.0366347987187741
17	26819100	26822325	3	gain	-	-1	germline	1	0.0839280551702637	0.271187286861008
17	26822325	26828775	4	gain	-	-1	germline	1	0.0143078685544846	0.0366347987187741
17	26828775	26864250	3	gain	-	-1	germline	1	4.42858974062049e-08	4.7085735310759e-09
17	26864250	26867475	8	gain	-	-1	germline	1	0.0832653047359334	0.270038112269749
17	26867475	26877150	3	gain	-	-1	germline	1	0.00270593197203772	0.00497567110523056
17	26877150	26880375	6	gain	-	-1	germline	1	0.0832653047359334	0.270038112269749
17	31098675	31321200	2	neutral	AA	28.8367	somatic	0	0.74460032237728	0.638534255249267
17	42289425	42441000	2	neutral	AA	21.8261	somatic	0	0.100799774042169	0.186674035057009
17	54080025	54089700	1	loss	A	-1	germline	1	0.00712636803996433	0.00939455720065807
17	55889250	55998900	2	neutral	AA	100	germline	1	0.000614960075618829	0.00201554996492959
17	56311725	56472975	2	neutral	AA	100	somatic	0	0.00234511352341422	0.00281111588967708
17	64419375	64445175	2	neutral	AA	100	germline	1	0.323833388769069	0.34249533493701
17	67776600	67779825	2	neutral	AA	100	somatic	0	0.922350085836433	0.943069749994746
18	5305125	5308350	1	loss	A	-1	germline	1	0.0836831805271177	0.270763131533848
18	41283225	41289675	1	loss	A	-1	germline	1	0.0146743047166693	0.0376835159779033
18	42473250	42476475	1	loss	A	-1	somatic	0	0.11957609453779	0.328308973144335
18	47607450	47652600	2	neutral	AA	36.3816	somatic	0	0.227036034194639	0.540148558601505
18	48626550	48629775	2	neutral	AA	100	somatic	0	0.295170302007417	0.540581138430358
18	49781100	49826250	2	neutral	AA	2.64776	somatic	0	0.00819753291784282	0.0122024501993708
18	50168100	50171325	0	loss	-	-1	germline	1	0.0832660930736402	0.270039481478488
18	53125425	53128650	2	neutral	AA	100	somatic	0	0.353041964531139	0.596876694053624
18	53586600	53589825	3	gain	AAB	37.9666	germline	1	0.0832999973151356	0.270098362248242
18	56631000	56650350	2	neutral	AA	100	somatic	0	0.877559890351371	0.971447574005718
18	56769675	56795475	2	neutral	AA	54.6877	somatic	0	0.499544239859204	0.723468869589686
18	57279225	57282450	1	loss	A	-1	germline	1	0.0839518602692609	0.271228492774306
18	57282450	57305025	2	neutral	AA	100	somatic	0	0.724334815481057	0.71490140853938
18	57314700	57317925	2	neutral	AA	100	somatic	0	0.0966705434292895	0.292596418614145
18	57688800	57692025	2	neutral	AA	100	somatic	0	0.458327449813521	0.687757582545014
18	61052475	61091175	2	neutral	AA	36.5489	somatic	0	0.867710148182931	0.699544912875582
18	62916525	62919750	2	neutral	AA	100	somatic	0	0.145793435175562	0.365862868757435
18	64899900	64903125	2	neutral	AA	100	somatic	0	0.422174173941779	0.658022700607451
18	66622050	66638175	2	neutral	AA	100	somatic	0	0.744461969449524	0.827670769557789
18	67073550	67076775	2	neutral	AA	100	somatic	0	0.35153248124449	0.595410118442761
18	67260600	67267050	2	neutral	AA	29.2707	germline	1	0.370235293071302	0.698035711953385
18	67370250	67418625	2	neutral	AA	27.2891	somatic	0	0.410451632006988	0.599648757203221
18	68586075	68608650	2	neutral	AA	100	somatic	0	0.884321417664582	0.950034682571322
18	69850275	69853500	2	neutral	AA	100	somatic	0	0.87451057575279	0.927194110851763
18	70143750	70179225	2	neutral	AA	29.2502	somatic	0	0.480671191073609	0.500586599275039
18	73281675	73284900	2	neutral	AA	100	somatic	0	0.838131414031945	0.913541123777355
18	76761450	76764675	2	neutral	AA	100	somatic	0	0.153049488762864	0.375758821555393
18	76964625	76967850	3	gain	AAB	53.6255	germline	1	0.0832999973151356	0.270098362248242
18	76967850	77000100	2	neutral	AA	100	somatic	0	0.0059591572841933	0.0256209883151628
18	77986950	77990175	2	neutral	AA	100	somatic	0	0.762050058827977	0.880543414449824
18	78864150	78880275	2	neutral	AA	100	somatic	0	0.581908436341383	0.820935694599086
18	79199550	79202775	4	gain	AABB	100	germline	1	0.0832747651874709	0.270054543109036
18	79518825	79522050	1	loss	A	-1	somatic	0	0.122395970017268	0.332501305653547
18	79944525	79947750	2	neutral	AA	45.7528	somatic	0	0.138421967865588	0.355623111342272
18	80050950	80054175	3	gain	-	-1	somatic	0	0.0841981664906427	0.271654554480554
19	474075	516000	3	gain	AAB	4.757	germline	1	2.93452361836953e-09	1.48501078101049e-09
19	4718175	4740750	2	neutral	AA	16.0323	somatic	0	0.384366315173597	0.856114090356577
19	7449750	7452975	8	gain	AAAAABBB	13.8008	germline	1	0.0832653047359334	0.270038112269749
19	8884875	8920350	2	neutral	AA	1.22102	germline	1	0.832559568626385	0.926698644170674
19	12606525	12638775	2	neutral	AA	100	germline	1	0.00609346967681455	0.0292861609563081
19	14131950	14312550	2	neutral	AA	15.6345	somatic	0	5.27736420323845e-05	0.000117955331845776
19	17331150	17340825	3	gain	AAB	79.2736	germline	1	0.00271527935016334	0.00499003427402689
19	24329400	24368100	4	gain	AABB	0.73214	germline	1	1.97518774591251e-09	7.55907558769309e-11
19	24368100	24419700	4	gain	AABB	1.06269	germline	1	4.3238477138343e-08	4.12525913429107e-09
19	27338325	27341550	5	gain	AAABB	2.12327	germline	1	0.0832668814173933	0.270040850692286
19	27344775	27348000	5	gain	AAABB	5.18233	germline	1	0.0832668814173933	0.270040850692286
19	27348000	27380250	6	gain	AAAABB	0.16995	germline	1	2.03492594364338e-07	3.0466267619822e-08
19	27380250	27383475	4	gain	AAAB	5.82342	germline	1	0.083275553597734	0.270055912378584
19	27383475	27399600	6	gain	AAAABB	0.218965	germline	1	0.000107519914466594	9.08103059704679e-05
19	29511975	29515200	1	loss	A	-1	somatic	0	0.087348735049651	0.277059152977966
19	29566800	29589375	2	neutral	AA	9.13563	somatic	0	0.221302143356629	0.372574209474104
19	30389175	30450450	2	neutral	AA	22.373	somatic	0	0.659163448871189	0.298259267996871
19	34391400	34394625	5	gain	AAABB	1.90998	germline	1	0.0832668814173933	0.270040850692286
19	46701225	46759275	2	neutral	AA	14.4315	somatic	0	0.057751018688902	0.0667064225291356
19	49658550	49665000	2	neutral	AA	100	somatic	0	0.699132129284023	0.959433092499254
20	64500	67725	8	gain	-	-1	germline	1	0.0832653047359334	0.270038112269749
20	67725	77400	3	gain	-	-1	germline	1	0.00272760542257076	0.00501979763175497
20	1180350	1183575	2	neutral	AA	100	germline	1	0.104740017949871	0.305547304922552
20	7133700	7143375	2	neutral	AA	55.0709	germline	1	0.492783863787346	0.345697894066929
20	7404600	7417500	2	neutral	AA	100	somatic	0	0.978018458175115	0.933354366521806
20	7417500	7423950	0	loss	-	-1	germline	1	0.0143092369593242	0.0366400436985157
20	9920100	9926550	2	neutral	AA	100	somatic	0	0.742733642191782	0.922856972004445
20	14064225	14186775	2	neutral	AA	45.6957	somatic	0	0.769652876670592	0.965404739652494
20	15425175	15428400	2	neutral	AA	100	somatic	0	0.17326303858533	0.402321590935469
20	18424425	18427650	2	neutral	AA	54.5678	somatic	0	0.987429950004945	0.960969449925926
20	19714425	19717650	2	neutral	AA	100	somatic	0	0.198402368436601	0.433617306966073
20	21304350	21307575	1	loss	A	-1	somatic	0	0.0832905345416142	0.270081929462897
20	22081575	22084800	1	loss	A	-1	germline	1	0.0860115410363611	0.274775419356998
20	24955050	24958275	2	neutral	AA	100	germline	1	0.509341995882536	0.72701011998218
20	25548450	25561350	2	neutral	AA	27.2878	somatic	0	0.132933543677191	0.361146066720822
20	26209575	26309550	2	neutral	AA	3.01028	germline	1	0.586324174397317	0.710710414308041
20	26316000	26322450	0	loss	-	-1	germline	1	0.0143108543138841	0.0366449146251226
20	28779900	28783125	7	gain	-	-1	germline	1	0.0832653047359334	0.270038112269749
20	28792800	28802475	3	gain	-	-1	germline	1	0.0028258007741948	0.00524153519763149
20	28802475	28873425	10	gain	-	-1	germline	1	9.63498982348245e-07	2.25107177453943e-07
20	29263650	29266875	6	gain	-	-1	germline	1	0.0832653047359334	0.270038112269749
20	29266875	29270100	4	gain	-	-1	germline	1	0.0832723999929605	0.270050435330799
20	29276550	29279775	4	gain	-	-1	germline	1	0.0832716116068833	0.270049066081522
20	29279775	29286225	3	gain	-	-1	germline	1	0.0355874605906122	0.105191091430451
20	29286225	29292675	4	gain	-	-1	germline	1	0.0143086149428134	0.0366355479613726
20	29295900	29315250	3	gain	-	-1	germline	1	2.21516312505955e-05	1.23322296758932e-05
20	29886075	29895750	4	gain	-	-1	germline	1	0.0027003739310266	0.00495845490564606
20	30460125	30463350	3	gain	-	-1	somatic	0	0.083275553597734	0.270055912378584
20	30937425	30943875	5	gain	-	-1	germline	1	0.0143062514975939	0.0366318018824451
20	30976125	30979350	4	gain	-	-1	somatic	0	0.0832723999929605	0.270050435330799
20	30979350	30998700	3	gain	-	-1	somatic	0	0.00277541175065079	0.00513773446088228
20	31066425	31069650	58	gain	-	-1	germline	1	0.0832653047359334	0.270038112269749
20	31163175	31166400	3	gain	-	-1	germline	1	0.0834254612978026	0.270316165553135
20	31166400	31169625	5	gain	-	-1	germline	1	0.0832692464849299	0.270044958364099
20	31182525	31188975	18	gain	-	-1	germline	1	0.0143061271152802	0.0366314272929859
20	31188975	31192200	5	gain	-	-1	germline	1	0.0832692464849299	0.270044958364099
20	31224450	31240575	4	gain	AABB	3.74057	germline	1	0.00010786696382987	9.14345133569139e-05
20	31240575	31243800	52	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBB	100	germline	1	0.0832653047359334	0.270038112269749
20	31243800	31247025	2	neutral	AA	8.56889	somatic	0	0.0933885486768638	0.287205099575322
20	33507750	33520650	2	neutral	AA	36.3786	germline	1	0.571877126969453	0.893707048280938
20	35381475	35397600	2	neutral	AA	54.6331	germline	1	0.0869929338228765	0.231225167220471
20	37374525	37377750	2	neutral	AA	100	somatic	0	0.423402770314746	0.659059670604403
20	37577700	37587375	2	neutral	AA	100	somatic	0	0.60641345022339	0.958140728681964
20	42324900	42331350	2	neutral	AA	54.5678	somatic	0	0.150234667151935	0.453740494225767
20	43614900	43618125	2	neutral	AA	100	germline	1	0.974229161029334	0.957674752195665
20	43640700	43650375	1	loss	A	-1	somatic	0	0.00554377632723032	0.00978686072396284
20	44556600	44559825	2	neutral	AA	100	germline	1	0.150739677989386	0.372633372270184
20	48458850	48504000	2	neutral	AA	54.5678	germline	1	0.82881949419674	0.721956943804933
20	51567750	51570975	3	gain	-	-1	somatic	0	0.0841079188518245	0.271499191664942
20	51641925	51658050	2	neutral	AA	100	somatic	0	0.412815729513758	0.645750592587636
20	51683850	51716100	2	neutral	AA	100	somatic	0	0.567154218965474	0.511532786576356
20	53044800	53067375	2	neutral	AA	54.5686	somatic	0	0.597288250270484	0.617401186588785
20	53644650	53647875	2	neutral	AA	100	somatic	0	0.420535042975354	0.65663640809464
20	54644400	54647625	2	neutral	AA	100	germline	1	0.795588215767817	0.895815803821544
20	55589325	55628025	2	neutral	AA	29.1956	somatic	0	0.879412990712328	0.949499377341622
20	56102100	56118225	2	neutral	AA	100	somatic	0	0.155635116435401	0.253874751880127
20	56369775	56385900	2	neutral	AA	23.276	somatic	0	0.143833921484649	0.211755929470642
20	58427325	58437000	2	neutral	AA	54.5678	somatic	0	0.213491613904432	0.278569430655719
20	59672175	59688300	2	neutral	AA	100	somatic	0	0.207718406916116	0.452733933474207
20	59946300	59949525	2	neutral	AA	100	somatic	0	0.10146746800325	0.300346663506022
20	61374975	61391100	2	neutral	AA	7.98929	somatic	0	0.365201624717543	0.698029307498169
20	61855500	61858725	2	neutral	AA	100	germline	1	0.121354303402354	0.330959726688786
20	62016750	62019975	2	neutral	AA	100	somatic	0	0.224541592571365	0.464431518428516
20	62606925	62610150	2	neutral	AA	100	somatic	0	0.126477589976291	0.338513771751219
21	0	8991300	7	gain	AAAAABB	-1	germline	1	0.000532029583046182	0.0006709526999229
21	8991300	10739250	7	gain	AAAAABB	0.483763	somatic	0	5.23955516553975e-22	0
21	10752150	10755375	15	gain	AAAAAAAAABBBBBB	2.8212	germline	1	0.0832653047359334	0.270038112269749
21	15776700	15857325	2	neutral	AA	13.7113	somatic	0	0.00377713583479862	0.0166843115372962
21	16969950	16973175	1	loss	A	-1	germline	1	0.0881242368854423	0.278376898527925
21	24055275	24058500	2	neutral	AA	100	somatic	0	0.82572519800678	0.908564702361001
21	25354950	25371075	2	neutral	AA	54.5681	somatic	0	0.552660690115765	0.64717856867424
21	26912625	26999700	2	neutral	AA	54.5721	germline	1	0.18078737234003	0.217592434489269
21	29479725	29492625	2	neutral	AA	100	somatic	0	0.477425685452225	0.460828895667691
21	29653875	29782875	2	neutral	AA	100	somatic	0	0.0942245549151651	0.156925429932266
21	30685875	30808425	2	neutral	AA	25.113	somatic	0	0.0466063646294288	0.13583892358084
21	30879375	30882600	2	neutral	AA	100	germline	1	0.542666640720253	0.751183872973324
21	31911375	31950075	2	neutral	AA	27.284	germline	1	0.997836295964942	0.994440956770698
21	41805675	41808900	4	gain	AAAA	6.93621	germline	1	0.0832747651874709	0.270054543109036
21	44417925	44469525	2	neutral	AA	29.7245	somatic	0	0.721016236933776	0.711667974956743
21	44617875	44621100	3	gain	-	-1	somatic	0	0.0837235568207211	0.270833104395274
21	45795000	45798225	4	gain	AAAA	10.337	germline	1	0.0832731883850842	0.270051804585144
21	46401300	46478700	2	neutral	AA	44.0067	germline	1	9.75292298921015e-11	4.89611540199775e-09
22	10726350	10729575	10	gain	-	-1	germline	1	0.0832653047359334	0.270038112269749
22	11619675	11629350	4	gain	AABB	76.9003	germline	1	0.0143087393442074	0.0366359225876993
22	16041150	16044375	9	gain	-	-1	germline	1	0.0832653047359334	0.270038112269749
22	16228200	16270125	3	gain	-	-1	somatic	0	0.00228082470420202	0.0179458915307453
22	17643975	17647200	1	loss	A	-1	somatic	0	0.0842053260435002	0.271666931294763
22	17927775	17931000	2	neutral	AA	100	somatic	0	0.941243923622057	0.948689169793136
22	19269375	19272600	2	neutral	AA	100	somatic	0	0.908961118275522	0.93885646694735
22	19714425	19730550	2	neutral	AA	28.7955	somatic	0	0.0178844223233311	0.0285550031957266
22	23171625	23174850	2	neutral	AA	100	somatic	0	0.142543902889763	0.361371481289694
22	23184525	23207100	2	neutral	AA	100	somatic	0	0.0889362041459723	0.157962826083022
22	23632800	23642475	2	neutral	AA	21.8273	somatic	0	0.756424001138785	0.799766431064429
22	25471050	25493625	2	neutral	AA	36.3786	germline	1	0.335980706775722	0.438706217852778
22	26986800	26990025	2	neutral	AA	100	somatic	0	0.6636047774761	0.828762056668864
22	27909150	27912375	2	neutral	AA	100	somatic	0	0.803156601952223	0.899131729885996
22	28254225	28257450	2	neutral	AA	100	somatic	0	0.866214948482463	0.924258770915803
22	28318725	28370325	2	neutral	AA	100	somatic	0	0.349900179355064	0.296178552610095
22	28460625	28557375	2	neutral	AA	31.7725	somatic	0	0.856935358283612	0.830467334474328
22	29647425	29650650	2	neutral	AA	100	somatic	0	0.620724431858539	0.803027584513935
22	29869950	29873175	2	neutral	AA	100	somatic	0	0.591872864456642	0.784655958119392
22	33359400	33365850	1	loss	A	-1	germline	1	0.0248045932965212	0.0572364133512921
22	34020525	34023750	2	neutral	AA	100	somatic	0	0.811953915235683	0.902874317992017
22	34143075	34146300	2	neutral	AA	100	somatic	0	0.973166292781414	0.957405675304797
22	34284975	34310775	2	neutral	AA	36.3932	somatic	0	0.0313953615529929	0.149382161118119
22	36703725	36745650	2	neutral	AA	14.9282	somatic	0	0.789535722279324	0.285564323059596
22	36745650	36752100	0	loss	-	-1	germline	1	0.0146784392391031	0.0377549953040633
22	37690575	37693800	2	neutral	AA	100	somatic	0	0.115248726129076	0.321798028093148
22	38716125	38722575	2	neutral	AA	54.5704	somatic	0	0.321943349772437	0.344624128189875
22	39580425	39590100	2	neutral	AA	65.7668	somatic	0	0.0858056822848524	0.254864603196015
22	41325150	41328375	2	neutral	AA	54.5678	somatic	0	0.170365474697804	0.398594739741068
22	41418675	41421900	2	neutral	AA	100	somatic	0	0.127484233041433	0.339966241144502
22	41908875	41912100	2	neutral	AA	100	somatic	0	0.690412440879839	0.843854639718258
22	43334325	43337550	2	neutral	AA	18.1893	somatic	0	0.2067307854785	0.443629230504397
22	44617875	44653350	2	neutral	AA	100	somatic	0	0.623441610634357	0.805321436564876
22	46723800	46727025	2	neutral	AA	100	somatic	0	0.803319292421569	0.899198099191529
22	46875375	46878600	2	neutral	AA	54.5678	somatic	0	0.89171467263898	0.93318283389262
22	47049525	47052750	2	neutral	AA	100	somatic	0	0.937932388806535	0.947722981028384
22	48284700	48294375	2	neutral	AA	51.5948	somatic	0	0.0194790487654246	0.0521126670658655
22	50029425	50168100	2	neutral	AA	5.63271	somatic	0	0.00216705496522035	0.00317326554512709
22	50642175	50645400	4	gain	AAAB	65.1681	germline	1	0.083270034852868	0.270046327598172
X	3521700	3524925	2	gain	-	-1	somatic	0	0.879953249173641	0.929108655932896
X	26083800	26087025	0	loss	-	-1	germline	1	0.0832668814173933	0.270040850692291
X	49139325	49142550	2	gain	AB	2.85402	somatic	0	0.162909934931609	0.388878839702679
X	108772800	108779250	0	loss	-	-1	germline	1	0.0143148361813773	0.0366569070120987
X	125271900	125281575	0	loss	-	-1	germline	1	0.0143067490363885	0.0366329256709331
X	131870250	131873475	0	loss	-	-1	germline	1	0.0832668814173933	0.270040850692291
X	141787125	141793575	0	loss	-	-1	somatic	0	0.0143091125541138	0.0366377957696112
Y	10655400	10658625	9	gain	-	-1	germline	1	0.0832653047359334	0.270038112269749
Y	10752150	10755375	5	gain	-	-1	germline	1	0.0832668814173933	0.270040850692286
Y	10755375	10758600	3	gain	-	-1	germline	1	0.0837956399782843	0.270957990690267
Y	10758600	10765050	6	gain	-	-1	germline	1	0.0143063758808616	0.0366321764752559
Y	10765050	10774725	3	gain	-	-1	germline	1	0.00391993584914897	0.00970813059732023
Y	10774725	10777950	6	gain	-	-1	germline	1	0.0832653047359334	0.270038112269749
Y	10777950	10784400	2	gain	-	-1	germline	1	0.81568676188845	0.700231401571365
Y	10784400	10794075	4	gain	-	-1	germline	1	0.00270543245579933	0.00497475559509697
Y	10794075	10797300	6	gain	-	-1	germline	1	0.0832653047359334	0.270038112269749
Y	10797300	10803750	4	gain	-	-1	germline	1	0.0143086149428134	0.0366366718504082
Y	10803750	10887600	2	gain	-	-1	somatic	0	0.232853641684446	0.00249723041800876
Y	10887600	10890825	4	gain	-	-1	germline	1	0.0832747651874709	0.270054543109036
Y	10926300	10932750	2	gain	-	-1	germline	1	0.737907242625013	0.699457361694247
Y	10932750	10935975	5	gain	-	-1	germline	1	0.0832692464849299	0.270044958364099
Y	10935975	10984350	2	gain	-	-1	germline	1	1.0880384104256e-05	8.65804359303501e-05
Y	10984350	10990800	9	gain	-	-1	germline	1	0.0143063758808616	0.0366321764752559
Y	10990800	10997250	2	gain	-	-1	germline	1	0.0690909165903527	0.220489198970435
Y	10997250	11000475	8	gain	-	-1	germline	1	0.0832653047359334	0.270038112269749
Y	11003700	11010150	2	gain	-	-1	germline	1	0.844076626315556	0.701298367901084
Y	11013375	11016600	16	gain	-	-1	germline	1	0.0832653047359334	0.270038112269749
Y	11016600	11035950	3	gain	-	-1	germline	1	0.0395819899925188	0.0369823850801715
Y	11290725	11306850	27	gain	AAAAAAAAAAAAAAAAAABBBBBBBBB	5.07667	germline	1	0.000107518166575907	9.08056629607135e-05
Y	11306850	11335875	10	gain	AAAAAAABBB	1.26081	germline	1	0.000107518166575907	9.08056629607135e-05
Y	11529375	11532600	20	gain	AAAAAAAAAAAAAAAAAAAB	37.9842	germline	1	0.0832653047359334	0.270038112269749
Y	11687400	11690625	10	gain	AAAAAAABBB	12.2101	germline	1	0.0832653047359334	0.270038112269749
Y	11690625	11716425	2	gain	AB	3.71991	somatic	0	0.000374501607425435	0.000449408111045879
Y	11716425	11719650	3	gain	AAA	7.65804	germline	1	0.0832771304364	0.270058650932884
Y	11719650	11726100	22	gain	AAAAAAAAAAAAAAABBBBBBB	28.3522	germline	1	0.0143061271152802	0.0366314272929859
Y	11729325	11745450	3	gain	AAB	5.34495	germline	1	0.00599153091050523	0.008955517294715
Y	11745450	11748675	10	gain	AAAAAAABBB	4.60576	germline	1	0.0832653047359334	0.270038112269749
Y	26635275	26641725	4	gain	AABB	31.5152	germline	1	0.0143089881498576	0.0366359225876993
Y	26651400	26654625	2	gain	AB	11.9237	germline	1	0.845879338668656	0.916554240792393
Y	56827725	56843850	17	gain	AAAAAAAAAAABBBBBB	8.12102	germline	1	0.000107518166575907	9.08056629607135e-05
