chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	5668521	5676894	3	gain	-	-1	germline	1	0.00270594644716878	0.00496971523306222
1	16612032	16617614	6	gain	-	-1	germline	1	0.0143087208125992	0.0366356620202136
1	16628778	16944161	4	gain	-	-1	germline	1	4.24989491934423e-10	1.02483577180124e-11
1	31429451	31432242	5	gain	-	-1	germline	1	0.0832811462073446	0.270065708164734
1	55663704	55669286	1	loss	A	-1	somatic	0	0.0143507600015551	0.0367659198082583
1	72300855	72345511	1	loss	A	-1	germline	1	4.31762183124505e-12	2.58681964737661e-14
1	125070292	125156813	3	gain	-	-1	germline	1	2.22840368712633e-05	1.26244096317896e-05
1	125162395	125165186	5	gain	-	-1	germline	1	0.0832804532433683	0.270064504695273
1	152583970	152614671	1	loss	A	-1	germline	1	9.31742651000264e-09	5.64090552046537e-10
1	161936611	161967312	2	neutral	AA	100	somatic	0	0.671872814322222	0.72905548581429
1	169257404	169271359	1	loss	A	-1	germline	1	0.000108622161925177	9.22832353599246e-05
1	172246565	172333086	2	neutral	AA	100	somatic	0	1.51847587180001e-06	3.55826654030444e-07
1	177141979	177183844	2	neutral	AA	36.3787	somatic	0	0.488709227653314	0.641635666500826
1	187744988	187753361	1	loss	A	-1	somatic	0	0.00280603780175124	0.00530969376619506
1	189902431	189919177	2	neutral	AA	100	somatic	0	0.996868859302778	0.830447843624895
1	198197283	198733155	2	neutral	AA	27.288	somatic	0	0.0074668282479287	0.00909521886363385
1	205113381	205191529	2	neutral	AA	100	somatic	0	0.782431034431425	0.964532393585851
1	225992852	228066565	2	neutral	AA	4.44806	somatic	0	0.0175066457537425	0.00248497746077869
1	228066565	228072147	1	loss	A	-1	somatic	0	0.0143162667135027	0.0366537749498058
1	228072147	234776129	2	neutral	AA	4.26091	somatic	0	6.14778008733866e-07	1.61044981894509e-06
1	234776129	234781711	6	gain	AAAABB	4.72685	germline	1	0.0143092674990803	0.0366366497962215
1	236096272	236099063	4	gain	AAAB	22.1379	germline	1	0.0832832251272982	0.270069318596606
1	236099063	237742962	2	neutral	AA	3.68245	germline	1	0.942175522551458	0.635458770633282
1	237762499	239942270	2	neutral	AA	100	germline	1	4.39172561281985e-15	2.17808437952272e-10
1	248599952	248672518	2	neutral	AA	100	somatic	0	2.1262962313981e-08	1.52894607863274e-07
2	3178949	3181740	6	gain	-	-1	germline	1	0.0832762955575971	0.270057283960713
2	4164172	4175336	1	loss	A	-1	somatic	0	0.000538003803443517	0.000683124174844174
2	17039055	17058592	1	loss	A	-1	germline	1	4.62316237643896e-06	1.67505267856249e-06
2	89772515	89786470	5	gain	-	-1	germline	1	0.000107588774415962	9.08518981321826e-05
2	89789261	89794843	3	gain	-	-1	germline	1	0.014863057465413	0.0382971874141091
2	89794843	89822753	4	gain	-	-1	germline	1	2.03810506879174e-07	3.05160621216771e-08
2	89822753	89825544	3	gain	-	-1	germline	1	0.0834760542247118	0.270404038196018
2	89825544	89842290	28	gain	-	-1	germline	1	2.2092373978826e-05	1.22897500892671e-05
2	89842290	89850663	4	gain	-	-1	germline	1	0.0027015989649875	0.00495960995627764
2	109197875	109200666	13	gain	-	-1	germline	1	0.0832659020787896	0.270039232740867
2	117040585	117046167	1	loss	A	-1	germline	1	0.0143260050159271	0.0366903539990179
2	125890846	125896428	1	loss	A	-1	germline	1	0.0143192204127481	0.036670907106604
2	132243162	132245953	4	gain	-	-1	somatic	0	0.0832832251272982	0.270069318596606
2	158115732	158124105	1	loss	A	-1	somatic	0	0.0027558458877377	0.00505967677432928
2	176399573	176407946	1	loss	A	-1	germline	1	0.0143138603929858	0.0366524573816943
2	207485731	207494104	1	loss	A	-1	germline	1	0.00270662507081005	0.00496917938105423
2	227377188	227393934	3	gain	-	-1	germline	1	2.25699500509801e-05	1.30848145033502e-05
2	239705035	239721781	2	neutral	AA	56.1394	somatic	0	0.285636544958527	0.400419217531378
3	66984	214907	2	neutral	AA	54.6068	somatic	0	3.39391465912e-29	0
3	15925446	15989639	2	neutral	AA	54.8528	germline	1	0.235259774959249	0.257755866121873
3	46029172	46062664	2	neutral	AA	15.5924	germline	1	0.0147039142457934	0.0604589862128051
3	58574717	58594254	2	neutral	AA	100	somatic	0	0.245366949801626	0.399644381157045
3	75669592	75884499	2	neutral	AA	0.815725	somatic	0	0.000728414558759472	0.000657131114684462
3	75884499	75912409	2	neutral	AA	100	somatic	0	0.233152181130917	0.274764103874559
3	90297223	90347461	2	neutral	AA	10.7999	germline	1	0.121839555415716	0.0956644228411934
3	90347461	90447937	2	neutral	AA	1.26873	germline	1	5.11790095324864e-06	7.08807163277703e-05
3	93744108	93766436	1	loss	A	-1	germline	1	2.22867187303857e-05	1.24203044288285e-05
3	98686969	98695342	1	loss	A	-1	somatic	0	0.00275825159028504	0.00514324258140975
3	99178185	99183767	1	loss	A	-1	germline	1	0.0143828550997552	0.0368628029668472
3	101464014	101486342	2	neutral	AA	56.5439	somatic	0	0.785353142080377	0.824534496707875
3	105968688	105977061	2	neutral	AA	100	germline	1	0.187940096262932	0.376349292571038
3	110093786	110107741	2	neutral	AA	36.3952	somatic	0	0.712615022410436	0.55723698887815
3	111073427	111092964	2	neutral	AA	100	germline	1	0.829778421484407	0.910200945720966
3	117688097	117696470	2	neutral	AA	100	somatic	0	0.47671109313919	0.340104602112033
3	118123493	118173731	2	neutral	AA	100	somatic	0	0.966608064018524	0.850573574041241
3	118332818	118879854	2	neutral	AA	100	somatic	0	0.172214287215112	0.0734229388617813
3	134877866	134883448	2	neutral	AA	100	germline	1	0.326379130138677	0.294500647049501
3	146667050	146672632	0	loss	-	-1	germline	1	0.0143060969739478	0.0366313819267693
3	149731568	149737150	2	neutral	AA	100	somatic	0	0.335801075587123	0.672191515719188
3	151481525	152491867	2	neutral	AA	100	somatic	0	2.0480584703477e-17	2.76610956362333e-11
3	162092907	162120817	2	neutral	AA	100	somatic	0	0.244578090259445	0.291660907440077
3	162793448	162907879	1	loss	A	-1	germline	1	6.57052371770872e-28	0
3	173522052	173572290	3	gain	AAB	1.81339	germline	1	3.71641704848976e-13	2.30926389122033e-14
3	175146414	175179906	2	neutral	AA	100	somatic	0	0.0811261136496648	0.0435719980299138
3	176170711	176198621	1	loss	A	-1	germline	1	4.37479895373298e-08	4.28177382438832e-09
3	183449639	183474758	2	neutral	AA	54.663	somatic	0	0.540112003386116	0.605391669180688
3	183885035	184060868	2	neutral	AA	9.08392	somatic	0	0.00973135733175087	0.00340471083332294
3	191345378	191353751	1	loss	A	-1	germline	1	0.00274043213605062	0.00508082671469257
3	193156737	193167901	0	loss	-	-1	germline	1	0.0143070808636999	0.0366343450217858
4	552618	555409	4	gain	AAAB	81.0241	somatic	0	0.0832846110972883	0.27007172557076
4	5099157	6006232	2	neutral	AA	4.2934	germline	1	0.0216272161711371	0.0640750206133215
4	6893770	6899352	1	loss	A	-1	germline	1	0.0143597512230812	0.0367916894479418
4	7862247	7865038	4	gain	AABB	6.80367	germline	1	0.083285997085962	0.270074132560574
4	10209478	10231806	1	loss	A	-1	germline	1	9.76956062526177e-07	2.29159668574397e-07
4	10390893	10399266	1	loss	A	-1	germline	1	0.00270764329785746	0.00496817480128142
4	31446197	31479689	2	neutral	AA	100	somatic	0	5.78879440741279e-05	0.000971999431556458
4	40293667	40296458	5	gain	AAABB	5.90271	germline	1	0.0832811462073446	0.270065708164734
4	42760911	42766493	1	loss	A	-1	germline	1	0.0143170324357697	0.036656410210347
4	45024412	45077441	2	neutral	AA	100	somatic	0	0.634660038280388	0.930190233981542
4	49146719	49155092	79	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBBBBBBBBBBBBBB	52.837	germline	1	0.00269986574317038	0.00495760452956562
4	49646308	49657472	17	gain	AAAAAAAAAAABBBBBB	15.6988	germline	1	0.00269988565948652	0.00495767136514524
4	51814915	51851198	2	neutral	AA	93.3513	somatic	0	0.0608992107990614	0.0664150210260143
4	54095162	54103535	2	neutral	AA	100	somatic	0	0.114342066589192	0.157681223952753
4	63269179	63288716	1	loss	A	-1	germline	1	4.62543946390075e-06	1.67536877337948e-06
4	68519050	68622317	1	loss	A	-1	germline	1	1.05411701954195e-18	0
4	69498691	69582421	2	neutral	AA	23.1959	somatic	0	0.142776338128929	0.178893309453156
4	78117299	78279177	2	neutral	AA	77.7606	somatic	0	0.00848385198215178	0.0306552004404715
4	81455335	81522319	2	neutral	AA	95.5899	germline	1	0.413612338351804	0.22380563126826
4	84380303	84394258	2	neutral	AA	100	somatic	0	0.235834915079856	0.428959022935679
4	102033378	102089198	2	neutral	AA	100	somatic	0	0.47843277243948	0.903863586219386
4	103794499	103922885	2	neutral	AA	27.284	somatic	0	0.446320658334541	0.761639499512863
4	115245972	115257136	1	loss	A	-1	germline	1	0.000535181573855843	0.000678112666376629
4	118907764	118935674	2	neutral	AA	73.7011	somatic	0	0.395626644045494	0.575092605230718
4	119711572	119767392	2	neutral	AA	100	somatic	0	0.430826726336858	0.542851322207603
4	132293400	132321310	2	neutral	AA	100	somatic	0	0.187366720274467	0.37048593000079
4	134512245	134515036	0	loss	-	-1	somatic	0	0.083265209217566	0.270038029357539
4	167552103	167702817	2	neutral	AA	27.388	somatic	0	0.000903064610607569	0.000197285456113083
4	168082393	168389403	2	neutral	AA	40.7205	germline	1	0.0061878839216314	0.025554652823305
4	172503337	172506128	0	loss	-	-1	germline	1	0.083265209217566	0.270038029357539
4	172617768	172793601	2	neutral	AA	60.9148	somatic	0	0.0901107300043204	0.0207665103061563
4	185520561	185523352	0	loss	-	-1	germline	1	0.083265209217566	0.270038029357539
5	13955	16746	3	gain	-	-1	somatic	0	0.0832929273095922	0.270086167744521
5	814972	820554	1	loss	A	-1	somatic	0	0.0143418833047177	0.0367147577712393
5	12810690	12821854	1	loss	A	-1	germline	1	0.000553482962005585	0.000735776344633732
5	25199939	25216685	3	gain	-	-1	germline	1	0.000199511216218975	0.00047289458105837
5	46143603	46146394	1	loss	A	-1	somatic	0	0.0832749096997056	0.270054877080521
5	55610675	55616257	1	loss	A	-1	somatic	0	0.0143341064799381	0.0367098099134597
5	84651030	84659403	1	loss	A	-1	germline	1	0.0143136416542679	0.0366541043483085
5	86917322	86922904	1	loss	A	-1	germline	1	0.0143239255620645	0.0366768391006652
5	118536561	118544934	1	loss	A	-1	germline	1	0.00273924119287181	0.00507843476786896
5	120043701	120049283	1	loss	A	-1	somatic	0	0.014338158727188	0.0367098099134597
5	135779359	135784941	1	loss	A	-1	somatic	0	0.0143287415451308	0.0366718957139851
5	137518152	137520943	0	loss	-	-1	germline	1	0.0832693664549631	0.270045249716295
5	141174362	141177153	7	gain	AAAABBB	100	germline	1	0.083272830947898	0.270051266789565
5	147585289	147588080	2	neutral	AA	100	somatic	0	0.651943394316284	0.821949459607263
5	148193727	148241174	2	neutral	AA	29.1473	somatic	0	0.604845560672857	0.433843122722915
5	149929729	149935311	2	neutral	AA	12.1262	somatic	0	0.0247200658667143	0.059852071890845
5	151350348	151408959	2	neutral	AA	36.3786	somatic	0	0.0657455250522845	0.190297346535921
5	152882607	152944009	2	neutral	AA	46.2892	somatic	0	0.629439121181903	0.760972870671567
5	153440807	153449180	2	neutral	AA	36.4529	somatic	0	0.972406838249773	0.913608767924324
5	156522071	156524862	2	neutral	AA	100	somatic	0	0.474202903975654	0.700252512368168
5	161166295	161177459	2	neutral	AA	100	somatic	0	0.0573224577872842	0.0415399433599071
5	161459350	161473305	2	neutral	AA	36.3855	somatic	0	0.117335616611701	0.235656792592625
5	163022310	163284664	2	neutral	AA	81.2989	somatic	0	0.361348417060856	0.383569053854492
5	164886698	164889489	1	loss	A	-1	somatic	0	0.0858076748607982	0.274426027703208
5	178300244	178311408	2	neutral	AA	24.052	somatic	0	0.492098395324566	0.783519505816215
5	178584926	178587717	8	gain	AAAAABBB	100	germline	1	0.0832707522381255	0.270047656533853
5	179198946	179299422	2	neutral	AA	11.2722	somatic	0	6.32228303009393e-07	9.29913993585885e-07
5	180951694	181001932	1	loss	A	-1	germline	1	2.07112361454998e-13	4.44089209850063e-16
5	181043797	181046588	4	gain	AABB	17.8937	germline	1	0.0832818391759916	0.27006691163811
5	181169392	181172183	2	neutral	AA	100	somatic	0	0.409410438076073	0.647195603096881
6	256772	382367	4	gain	-	-1	germline	1	6.85335107095414e-30	0
6	19040202	19048575	1	loss	A	-1	germline	1	0.00271291971771829	0.00499085655512632
6	32487240	32587716	1	loss	A	-1	germline	1	8.64423970944733e-14	0
6	35786202	35797366	5	gain	-	-1	germline	1	0.00053238084569714	0.000671250949264568
6	35797366	35800157	3	gain	-	-1	germline	1	0.0833081754458613	0.270112646527187
6	48962513	48970886	1	loss	A	-1	somatic	0	0.00270838223065971	0.0049766190602567
6	51198104	51203686	1	loss	A	-1	somatic	0	0.0260948947406844	0.0737667969983805
6	60229780	60238153	3	gain	-	-1	germline	1	0.0027024161230913	0.00496081356921418
6	60238153	60240944	4	gain	-	-1	germline	1	0.0832811462073446	0.270065708164734
6	72152932	72158514	1	loss	A	-1	somatic	0	0.0143687474130045	0.0367850803421369
6	73883352	73891725	1	loss	A	-1	germline	1	0.00270726391746786	0.00496991619122111
6	80573379	80584543	1	loss	A	-1	germline	1	0.000536609387039533	0.000677686455134885
6	94578617	94584199	1	loss	A	-1	somatic	0	0.0144805702141729	0.0371544602813029
6	96398349	96426259	2	neutral	AA	27.2943	somatic	0	0.576884596700252	0.892802483966059
6	98204126	98212499	2	neutral	AA	100	somatic	0	0.791907308108589	0.535337410537771
6	103289328	103314447	1	loss	A	-1	germline	1	9.72065776717111e-07	2.29398566475858e-07
6	108368948	108419186	2	neutral	AA	54.5873	somatic	0	0.587063431768484	0.512689440807121
6	111455794	111536733	2	neutral	AA	24.8228	somatic	0	0.985809078740376	0.99660696347986
6	137816789	137825162	3	gain	AAB	16.5039	germline	1	0.00270403117249819	0.00496516217880516
6	147777868	147783450	2	neutral	AA	54.5678	somatic	0	0.709950605128187	0.663757421040034
6	156000154	156005736	2	neutral	AA	100	somatic	0	0.605626089716403	0.949883963525113
6	157311924	157314715	8	gain	AAAAABBB	1.75931	germline	1	0.0832707522381255	0.270047656533853
6	157412400	157451474	2	neutral	AA	100	somatic	0	0.0912479712751047	0.333267133281865
6	159273997	159293534	2	neutral	AA	54.5678	somatic	0	0.842091614435105	0.608062582806385
6	159871271	159991284	2	neutral	AA	21.8271	somatic	0	0.558856216506168	0.682872156140768
6	168328001	168336374	2	neutral	AA	27.2839	somatic	0	0.144910862719846	0.287672172707004
6	170144942	170147733	5	gain	AAAAA	8.30216	germline	1	0.0832811462073446	0.270065708164734
7	904284	907075	4	gain	AAAB	36.011	germline	1	0.0832839181099578	0.270070522081726
7	2375141	2377932	4	gain	AAAB	13.708	somatic	0	0.0832866900873054	0.270075336061352
7	2989161	4440481	2	neutral	AA	12.8318	somatic	0	2.04775704175886e-16	1.49880108324396e-14
7	4440481	4443272	2	neutral	AA	-1	somatic	0	NA	NA
7	4443272	6690027	2	neutral	AA	2.7774	somatic	0	0.00434781062819742	0.00128673747205732
7	9760127	9765709	1	loss	A	-1	germline	1	0.0144921207702266	0.0371921432295366
7	9765709	12980941	2	neutral	AA	3.95063	germline	1	4.37439395506007e-12	7.23933579749314e-10
7	12980941	12989314	1	loss	A	-1	germline	1	0.0143183451865647	0.0366682709342493
7	12989314	16134771	2	neutral	AA	25.7381	somatic	0	3.57742584348127e-33	0
7	16134771	16519929	2	neutral	AA	100	germline	1	0.72386604963974	0.761252244529436
7	23994227	24041674	2	neutral	AA	100	somatic	0	0.641352825614509	0.734276768485871
7	40329950	40385770	2	neutral	AA	100	somatic	0	0.538191903601411	0.35724501383555
7	55563228	55574392	2	neutral	AA	100	germline	1	0.973071802284224	0.973127749814912
7	57486227	57497391	3	gain	AAB	1.60392	germline	1	0.000533166986169413	0.000672349748997547
7	57821147	57904877	2	neutral	AA	19.3492	somatic	0	0.0166760742268576	0.0112828523482684
7	57904877	57916041	1	loss	A	-1	germline	1	0.000552732752100336	0.000721044580126562
7	61044752	61058707	3	gain	-	-1	somatic	0	0.000107851158936106	9.11524383127027e-05
7	62297911	62350940	3	gain	AAB	0.412864	somatic	0	1.35782401272402e-08	3.50310047636526e-09
7	62350940	62359313	2	neutral	AA	12.4916	somatic	0	0.00869231731449979	0.0150883948737398
7	62401178	62406760	4	gain	-	-1	germline	1	0.0143113450757477	0.0366396132640576
7	62437461	62456998	3	gain	AAB	2.09936	germline	1	1.26706611384693e-05	8.61660689418509e-05
7	62685860	62702606	1	loss	A	-1	germline	1	2.22607018948324e-05	1.23875418014396e-05
7	62842156	62920304	2	neutral	AA	5.54342	somatic	0	0.0377814809367856	0.0426955428700928
7	70955593	70958384	0	loss	-	-1	germline	1	0.083265209217566	0.270038029357539
7	71044905	71056069	2	neutral	AA	27.284	germline	1	0.282396871662321	0.367766118273465
7	71198410	71505420	2	neutral	AA	100	germline	1	6.22618069187381e-11	2.30007679569155e-10
7	84173769	85083635	2	neutral	AA	100	somatic	0	5.13939879238495e-13	8.28102677541409e-08
7	100950470	100956052	4	gain	AABB	13.4046	germline	1	0.0143125480049073	0.0366412597257001
7	100956052	100958843	14	gain	AAAAAAAAAAAAAB	5.17807	germline	1	0.0832659020787896	0.270039232740867
7	100958843	100972798	4	gain	AABB	0.297215	germline	1	0.00010771027350286	9.10357903874948e-05
7	101095602	101282599	2	neutral	AA	4.49736	somatic	0	7.26260166438441e-06	4.8442245731084e-05
7	101651011	101687294	2	neutral	AA	36.3812	germline	1	0.0508006335785343	0.127983742979175
7	103518190	103526563	2	neutral	AA	100	somatic	0	0.491597246097563	0.380724208629652
7	106099865	106102656	4	gain	-	-1	somatic	0	0.083285997085962	0.270074132560574
7	114827322	114891515	2	neutral	AA	9.55699	somatic	0	0.692253351672913	0.817064863295168
7	121218712	121235458	2	neutral	AA	36.3786	somatic	0	0.0394116423133639	0.182481940503389
7	127305883	127464970	2	neutral	AA	48.5371	germline	1	0.0193522889824554	0.0855091427637529
7	131056987	131070942	2	neutral	AA	54.6581	somatic	0	0.242377029829455	0.35164456487881
7	134810882	134824837	2	neutral	AA	100	germline	1	0.142288594353273	0.309330092569237
7	140490567	140498940	2	neutral	AA	54.5785	somatic	0	0.156098068479342	0.251864474495991
7	143848140	143850931	4	gain	-	-1	germline	1	0.0832811462073446	0.270065708164734
7	152399764	152402555	3	gain	AAB	9.92269	germline	1	0.0832887691193614	0.270078946587176
7	152402555	152408137	9	gain	AAAAAAABB	1.45537	germline	1	0.014307190188468	0.0366336865381013
7	152413719	152489076	2	neutral	AA	24.3172	somatic	0	0.10482345271805	0.191432979539724
7	155257748	155263330	2	neutral	AA	54.5706	germline	1	0.622933083122401	0.873198842374257
7	155263330	155288449	1	loss	A	-1	germline	1	2.07758699400089e-07	3.32095964061807e-08
7	155349851	155352642	4	gain	AAAA	23.5617	germline	1	0.083285997085962	0.270074132560574
7	158149224	158152015	5	gain	AAABB	2.64457	germline	1	0.0832804532433683	0.270064504695273
7	158592993	158595784	6	gain	AAAABB	15.5665	germline	1	0.0832742167777658	0.27005367364628
8	644721	650303	1	loss	A	-1	somatic	0	0.0143970849323427	0.0368853196984157
8	11387280	11390071	1	loss	A	-1	somatic	0	0.0832714451367125	0.27004885994852
8	15919864	15928237	1	loss	A	-1	germline	1	0.00270870182623363	0.00497058610554535
8	16383170	16394334	2	neutral	AA	100	somatic	0	0.91367587107929	0.688888688656436
8	25132955	25197148	2	neutral	AA	100	somatic	0	0.0482152277514127	0.15727745581548
8	25208312	25213894	1	loss	A	-1	germline	1	0.0143087208125992	0.0366363205349661
8	30670299	30706582	2	neutral	AA	76.5391	somatic	0	0.00202122274352144	0.0230929399743002
8	31881593	31895548	2	neutral	AA	100	somatic	0	0.263351508442912	0.502554895855309
8	32822160	32824951	0	loss	-	-1	germline	1	0.083265209217566	0.270038029357539
8	39375428	39528933	1	loss	A	-1	germline	1	4.09568862084326e-35	0
8	43235381	43238172	4	gain	AAAA	4.66989	germline	1	0.0832866900873054	0.270075336061352
8	43238172	43240963	8	gain	AAAAABBB	1.34209	germline	1	0.083270059344209	0.270046453123111
8	43240963	43243754	3	gain	AAB	1.69008	germline	1	0.0832891156287912	0.270080150103614
8	45973352	45987307	2	neutral	AA	5.19695	germline	1	0.286695828950791	0.573666106870673
8	50117987	50126360	1	loss	A	-1	germline	1	0.00271028033455031	0.00498091324400329
8	62122078	62127660	1	loss	A	-1	germline	1	0.0143359681978075	0.0366814534542277
8	69423334	69434498	2	neutral	AA	100	germline	1	0.390486346159659	0.66434944467427
8	74449925	74455507	0	loss	-	-1	germline	1	0.014307190188468	0.03663467426751
8	87659728	87682056	2	neutral	AA	100	somatic	0	0.554631225391852	0.823234600308659
8	102708800	102731128	2	neutral	AA	100	somatic	0	0.0734807499089996	0.099814287097032
8	117861139	117863930	1	loss	A	-1	germline	1	0.0832762955575971	0.270057283960724
8	123418020	123448721	2	neutral	AA	27.3167	germline	1	0.387038335031505	0.738220663950477
8	141062722	141073886	2	neutral	AA	100	somatic	0	0.0228267433829012	0.0558034077413448
8	144358893	144375639	2	neutral	AA	36.3786	somatic	0	0.0764575303734212	0.0398178667675131
9	28189100	28194682	3	gain	-	-1	somatic	0	0.0243596701423631	0.0680855266405741
9	32079754	32090918	3	gain	-	-1	germline	1	0.000535911504921584	0.000677296996053456
9	40868613	40874195	4	gain	-	-1	germline	1	0.0143113450757477	0.0366392839794969
9	40913269	40916060	6	gain	-	-1	germline	1	0.083275602626316	0.270056080518654
9	40924433	40927224	7	gain	-	-1	germline	1	0.083272830947898	0.270051266789565
9	42386917	42389708	6	gain	AAABBB	82.0173	germline	1	0.083275602626316	0.270056080518654
9	69121906	69130279	1	loss	A	-1	germline	1	0.0143517466002822	0.036743796956958
9	94266025	94450231	2	neutral	AA	100	germline	1	0.796656159952361	0.534831257381941
9	97525913	97531495	2	neutral	AA	100	germline	1	0.307529768689919	0.581921763824797
9	97852460	97869206	2	neutral	AA	100	somatic	0	0.143606177471842	0.43819300713449
9	101651011	101653802	3	gain	-	-1	somatic	0	0.0835239706539258	0.270487162953312
9	103013019	103015810	0	loss	-	-1	germline	1	0.083265209217566	0.270038029357539
9	110688269	110691060	1	loss	A	-1	somatic	0	0.0833151071643409	0.270124682963861
9	111762804	111804669	2	neutral	AA	100	somatic	0	0.654351635912775	0.784453518330942
9	121148937	121210339	2	neutral	AA	54.5678	somatic	0	0.00114019496480542	0.00847979564035584
9	122552810	122608630	2	neutral	AA	100	somatic	0	0.509747032738828	0.84744783781631
9	125982949	126024814	2	neutral	AA	49.6851	somatic	0	0.520896905599039	0.931023145039802
9	128014797	128017588	3	gain	AAB	24.8121	somatic	0	0.0832977787440669	0.27009459260621
9	129424252	129440998	3	gain	AAB	0.241337	germline	1	2.49892836778214e-05	1.56149182111154e-05
9	130507160	130512742	1	loss	A	-1	somatic	0	0.014364906967946	0.0367731865689371
9	130738813	130752768	1	loss	A	-1	somatic	0	0.000107769531992018	9.09969392689502e-05
9	131740782	131746364	3	gain	AAB	13.2739	somatic	0	0.0143773093772501	0.0368287196404982
9	136800865	136803656	4	gain	AAAA	19.9301	somatic	0	0.0832866900873054	0.270075336061352
9	137325573	137328364	6	gain	AAAABB	7.34672	germline	1	0.0832762955575971	0.270057283960713
9	137529316	137546062	2	neutral	AA	10.9137	somatic	0	0.0152298864019	0.0357249224498207
9	137713522	137719104	3	gain	AAB	13.586	germline	1	0.0143198768633551	0.0366593750765947
10	125595	198161	2	neutral	AA	36.3786	somatic	0	2.94238409183342e-12	9.89763826453327e-13
10	3935310	3943683	2	neutral	AA	54.5678	somatic	0	0.922990879919916	0.943427317030375
10	13740093	13754048	2	neutral	AA	23.3121	somatic	0	0.997615665075225	0.695376507204246
10	18532240	18568523	2	neutral	AA	100	somatic	0	0.421658164729691	0.777388004950648
10	20784577	20820860	2	neutral	AA	100	germline	1	0.316746380893836	0.332142518028681
10	26935941	26941523	3	gain	AAB	8.62378	somatic	0	0.0143198768633551	0.0366547631530807
10	29386439	29556690	2	neutral	AA	48.569	somatic	0	0.431736915508747	0.81794014567487
10	33053813	33104051	2	neutral	AA	58.0998	germline	1	0.469120016772366	0.920235604355478
10	35311732	35339642	2	neutral	AA	100	somatic	0	0.160907745456903	0.480805938813478
10	38485099	38493472	3	gain	AAB	4.9469	germline	1	0.00270376193636489	0.00496516217880516
10	38493472	38524173	3	gain	AAB	0.585783	germline	1	1.37103123819303e-08	1.87061754974849e-09
10	38524173	38526964	4	gain	AAAA	2.12647	germline	1	0.0832818391759916	0.27006691163811
10	38526964	38529755	24	gain	AAAAAAAAAAAAAAAAAAAAAAAB	9.53341	germline	1	0.083265209217566	0.270038029357528
10	38574411	38577202	2	neutral	AA	9.53993	somatic	0	0.140771175953854	0.358923428977901
10	38577202	38579993	5	gain	AAABB	6.47219	germline	1	0.0832811462073446	0.270065708164734
10	38579993	38825601	3	gain	AAB	0.453439	somatic	0	2.60910474182096e-12	2.34334773807632e-12
10	39403338	39408920	3	gain	-	-1	germline	1	0.0143237066876733	0.0366751912403271
10	41820344	41842672	2	neutral	AA	2.84142	germline	1	0.000376199113892499	0.00293185753380054
10	41856627	41915238	32	gain	AAAAAAAAAAAAAAAAAAAAABBBBBBBBBBB	70.3759	germline	1	9.63488527336557e-07	2.25110809548568e-07
10	42300396	42322724	3	gain	AAA	7.7623	germline	1	1.17064711992043e-06	5.20349444643742e-07
10	45063486	45172335	2	neutral	AA	93.1674	somatic	0	0.00449567756939147	0.0410149090499634
10	46514806	46559462	4	gain	AABB	0.783599	germline	1	9.15317687085025e-11	1.38589140163958e-12
10	53640229	53645811	2	neutral	AA	100	somatic	0	0.169493728233331	0.205887577055132
10	54686854	54709182	4	gain	AAAB	26.1201	germline	1	9.64994064511896e-07	2.25353718463772e-07
10	59571104	59612969	2	neutral	AA	100	somatic	0	0.507729465169599	0.371147090965486
10	71418899	71435645	2	neutral	AA	19.1688	somatic	0	0.126731327543501	0.539271424997032
10	76495728	76501310	0	loss	-	-1	germline	1	0.0143060969739478	0.0366313819267693
10	77520025	77573054	2	neutral	AA	11.8713	somatic	0	0.32300443099514	0.335442669090365
10	98491599	98650686	2	neutral	AA	53.7025	somatic	0	0.0960220265582299	0.0186579515781148
10	103250254	103384222	2	neutral	AA	13.3939	somatic	0	0.00570523998331533	0.00734099720518033
10	110018429	110144024	2	neutral	AA	24.9725	somatic	0	0.00161633361203532	0.00980693853846804
10	110557092	110568256	2	neutral	AA	100	somatic	0	0.366285182693684	0.489182626630167
10	110875266	111042726	2	neutral	AA	54.5683	somatic	0	0.0158730072868761	0.0143728586059075
10	114601251	114696145	2	neutral	AA	54.5678	somatic	0	0.410773215983591	0.274966857354877
10	119128253	119136626	2	neutral	AA	100	somatic	0	0.491697727995996	0.475286299827345
10	128464148	128466939	8	gain	AAAAABBB	100	germline	1	0.0832707522381255	0.270047656533853
10	130473668	130560189	2	neutral	AA	8.09548	germline	1	9.68773636196764e-05	0.000363789549951976
10	131110016	131115598	1	loss	A	-1	germline	1	0.0143107983192493	0.0366425769416245
10	132363175	132365966	6	gain	AAAABB	9.40995	germline	1	0.0832742167777658	0.27005367364628
11	4948443	4954025	1	loss	A	-1	germline	1	0.0143369538994955	0.0366824423103544
11	5785743	5788534	0	loss	-	-1	germline	1	0.0832672878152478	0.270041639519301
11	18922980	18942517	1	loss	A	-1	germline	1	4.63752597514848e-06	1.69273641659196e-06
11	54776166	54778957	1	loss	A	-1	germline	1	0.0832714451367125	0.27004885994852
11	55219935	55259009	2	neutral	AA	3.67204	somatic	0	0.0174107946823662	0.0328912244224855
11	55599511	55686032	1	loss	A	-1	germline	1	1.66379755011291e-20	0
11	63849707	63986466	2	neutral	AA	100	somatic	0	0.199217397993346	0.197490014390992
11	72055247	72077575	2	neutral	AA	55.0905	somatic	0	0.409880927780458	0.424676546826843
11	84131904	84173769	2	neutral	AA	100	somatic	0	0.485027860980933	0.546790894510784
11	91237790	91274073	2	neutral	AA	100	somatic	0	0.0260515425937371	0.0794841998827084
11	100347614	100905814	2	neutral	AA	7.32409	somatic	0	5.31994196285112e-05	0.00084978605471564
11	104394564	104402937	1	loss	A	-1	somatic	0	0.0144173247361067	0.0369645548662363
11	121966700	122050430	2	neutral	AA	35.3711	germline	1	0.0198140831150829	0.0141148077889881
11	122837492	122901685	2	neutral	AA	100	germline	1	0.467185344588735	0.827470679150005
12	2255128	2257919	6	gain	AAAABB	11.4699	germline	1	0.083275602626316	0.270056080518654
12	14873239	14889985	2	neutral	AA	100	somatic	0	0.0372553596881481	0.0614620785726396
12	20703638	21487909	2	neutral	AA	21.9651	somatic	0	0.835709504589717	0.72659709018356
12	27912791	28186309	2	neutral	AA	27.6344	somatic	0	0.428001579261564	0.37246677204186
12	31848101	31909503	3	gain	AAB	0.598796	germline	1	4.60465037415932e-16	0
12	33148707	33154289	1	loss	A	-1	germline	1	0.0143365158024761	0.0366847497320165
12	34675384	37753857	2	neutral	AA	0.400957	germline	1	1.31107338257281e-18	1.4432899320127e-15
12	45510046	45515628	1	loss	A	-1	somatic	0	0.0143422119848809	0.0366946401203552
12	48315001	48317792	1	loss	A	-1	germline	1	0.083275602626316	0.270056080518665
12	57511346	57530883	2	neutral	AA	22.0283	germline	1	0.4577385562353	0.531107148584126
12	58451913	58479823	2	neutral	AA	54.5873	somatic	0	0.885542701999241	0.853683458425853
12	60684713	61201048	2	neutral	AA	100	somatic	0	0.00355057042005422	0.000429069493390832
12	90090689	90099062	1	loss	A	-1	germline	1	0.0143487869835691	0.0367457776329556
12	95388007	95396380	2	neutral	AA	100	germline	1	0.678484861113808	0.482540303162198
12	98943741	99013516	2	neutral	AA	100	somatic	0	0.515401701839864	0.575903113410296
12	114871978	114916634	2	neutral	AA	100	somatic	0	0.154336799420136	0.371048280855865
12	119516202	119521784	2	neutral	AA	100	somatic	0	0.688236710177083	0.885615291295891
12	120830763	120883792	2	neutral	AA	54.5678	somatic	0	0.386248990702981	0.746168073246332
12	124947488	124955861	2	neutral	AA	100	germline	1	0.732936330467208	0.867405585738459
12	130643919	130646710	7	gain	AAAAABB	46.5059	germline	1	0.0832707522381255	0.270047656533853
12	131082106	131115598	2	neutral	AA	27.3776	somatic	0	0.00350960842903301	0.0148221491255441
13	21376269	21379060	4	gain	-	-1	germline	1	0.0832818391759916	0.27006691163811
13	22020990	22023781	0	loss	-	-1	germline	1	0.083265209217566	0.270038029357539
13	23059242	23064824	1	loss	A	-1	somatic	0	0.0144642806139554	0.0371031585188027
13	26472635	26478217	1	loss	A	-1	germline	1	0.0143845576305791	0.036866444563919
13	35956453	35959244	4	gain	-	-1	germline	1	0.083285997085962	0.270074132560574
13	37497085	37511040	1	loss	A	-1	germline	1	0.000107989133106994	9.12405298159058e-05
13	50494772	50497563	0	loss	-	-1	germline	1	0.083265209217566	0.270038029357539
13	53659766	53665348	1	loss	A	-1	germline	1	0.0144262426018358	0.0368141681783974
13	63034735	63059854	3	gain	-	-1	germline	1	4.08696079557308e-06	1.47370210190623e-06
13	63059854	63065436	4	gain	-	-1	germline	1	0.0143139697634505	0.0366468581794988
13	63065436	63068227	6	gain	-	-1	germline	1	0.0832749096997056	0.27005487708051
13	71901742	71907324	1	loss	A	-1	germline	1	0.0143157197911442	0.0366550925593563
13	84034219	84053756	1	loss	A	-1	germline	1	4.69288448132205e-06	1.77144947410834e-06
13	88106288	88212346	2	neutral	AA	100	somatic	0	0.00616147472815579	0.0618064285075233
13	90207911	90213493	1	loss	A	-1	germline	1	0.0160810427793717	0.0420130800098659
13	95508020	95563840	2	neutral	AA	32.6732	somatic	0	0.562226887345937	0.944689730527333
13	97877579	97883161	1	loss	A	-1	somatic	0	0.0310522141088662	0.0900348478282502
13	98600448	98606030	1	loss	A	-1	germline	1	0.0143643584068518	0.0368022661779052
13	99928964	99942919	2	neutral	AA	12.1268	somatic	0	0.218102185623519	0.304538428733702
13	105642141	105661678	2	neutral	AA	13.6479	germline	1	0.587191405953154	0.552669996712835
13	108991341	109130891	2	neutral	AA	48.8868	somatic	0	0.780128926505406	0.77988847524072
13	110043548	110049130	3	gain	AAB	14.7824	germline	1	0.0143276468781231	0.0366639875077935
13	110384050	110386841	3	gain	AAB	3.97899	somatic	0	0.0833123344208881	0.270119868342207
13	112870831	112873622	3	gain	AAB	100	somatic	0	0.0832998580003397	0.27009820331994
13	114154691	114157482	1	loss	A	-1	somatic	0	0.0833483859166222	0.270182463309282
14	20536178	20541760	2	neutral	AA	36.3786	somatic	0	0.678956786818583	0.576042861651917
14	21370687	21387433	2	neutral	AA	100	somatic	0	0.49119994674227	0.261055156172659
14	29620883	29626465	2	neutral	AA	54.5792	somatic	0	0.758812805461632	0.904303040143083
14	30047906	30064652	2	neutral	AA	100	somatic	0	0.0214722583413587	0.038889064737726
14	34426985	34443731	2	neutral	AA	54.5678	somatic	0	0.134067828317648	0.316117107284773
14	36517444	36704441	2	neutral	AA	36.3841	somatic	0	0.0235462382120962	0.096086404254066
14	36704441	36754679	2	neutral	AA	100	somatic	0	0.715706251845266	0.872274956451443
14	37298924	37301715	1	loss	A	-1	somatic	0	0.0832936203576464	0.270087371284458
14	37664545	37667336	1	loss	A	-1	somatic	0	0.0833123344208881	0.270119868342218
14	37820841	37873870	2	neutral	AA	27.7522	germline	1	0.809873004365163	0.540101625110264
14	41197951	41200742	0	loss	-	-1	germline	1	0.083265209217566	0.270038029357539
14	42518094	42523676	1	loss	A	-1	somatic	0	0.0143298362859117	0.0366689299617935
14	47237675	47248839	1	loss	A	-1	germline	1	0.000534696112334368	0.000677005039442791
14	49713292	49716083	1	loss	A	-1	somatic	0	0.0833137207832709	0.27012227564521
14	51828870	51834452	2	neutral	AA	36.3795	somatic	0	0.537529686267599	0.809081461447628
14	53726750	53779779	2	neutral	AA	29.3193	somatic	0	0.0480336723682642	0.293621169501393
14	60589819	60592610	1	loss	A	-1	somatic	0	0.0833289720028749	0.270148757011627
14	62750053	62819828	2	neutral	AA	56.3591	somatic	0	0.843497371297685	0.953647333921533
14	63394774	63397565	1	loss	A	-1	somatic	0	0.0833934680551585	0.270260721904639
14	64019958	64061823	2	neutral	AA	100	somatic	0	0.0626550598248496	0.0473062181739587
14	69548929	69557302	1	loss	A	-1	somatic	0	0.00292269415837132	0.00547923283576679
14	71413317	71633806	2	neutral	AA	100	somatic	0	0.275792546281269	0.20907598835403
14	82035863	82038654	1	loss	A	-1	germline	1	0.0833393718582357	0.270166813575098
14	83576495	83584868	1	loss	A	-1	somatic	0	0.00271914755196488	0.00500924567927452
14	84829654	84835236	1	loss	A	-1	somatic	0	0.0143777485736121	0.0368297119688414
14	85817668	85845578	1	loss	A	-1	germline	1	9.73209499429541e-07	2.32501227159787e-07
14	89434804	89465505	2	neutral	AA	100	somatic	0	0.727615017310152	0.979410266311107
14	89833917	89839499	2	neutral	AA	100	germline	1	0.762518776782711	0.735865495674724
14	90517712	90540040	2	neutral	AA	61.808	somatic	0	0.618446209845856	0.941334937837665
14	95354515	95371261	2	neutral	AA	100	somatic	0	0.133779020052668	0.309297711533907
14	99476822	99518687	2	neutral	AA	100	somatic	0	0.561566070768921	0.487452615334366
14	99926173	99928964	6	gain	AAAABB	17.9501	somatic	0	0.0832742167777658	0.27005367364628
14	101709622	101726368	2	neutral	AA	39.9663	somatic	0	0.000436522574904035	0.00118977473399462
14	101949648	101963603	2	neutral	AA	36.3786	somatic	0	0.328667171656103	0.544411777021497
14	103060466	103107913	2	neutral	AA	36.6518	somatic	0	0.0102367391395606	0.0741308520758672
14	103222344	103255836	2	neutral	AA	100	somatic	0	0.205802591748974	0.572821891220666
14	103428878	103501444	2	neutral	AA	72.6657	germline	1	0.945512230900527	0.916198327435145
14	104707156	104743439	2	neutral	AA	19.0444	somatic	0	0.00558423970830345	0.00785790283472265
14	105343504	105354668	2	neutral	AA	11.0721	somatic	0	0.714972994953195	0.686410119165226
15	0	17080920	6	gain	AAAAAB	-1	germline	1	NA	NA
15	17080920	17083711	17	gain	-	-1	germline	1	0.083265209217566	0.270038029357528
15	17083711	20340808	6	gain	AAAAAB	-1	germline	1	0.197299536504837	0.338651274529915
15	20340808	20672937	6	gain	AAAAAB	14.0088	germline	1	9.25761736921356e-13	3.44169137633799e-15
15	22224733	22227524	3	gain	AAB	32.1824	germline	1	0.0833248123550872	0.270141534632864
15	22227524	22272180	3	gain	AAB	1.97916	germline	1	2.22314084854958e-05	1.24316904441812e-05
15	49230449	49386745	2	neutral	AA	100	somatic	0	0.0282189820167065	0.205091999518486
15	59989754	60065111	2	neutral	AA	70.2665	germline	1	0.104510494580642	0.139395740341593
15	71418899	71421690	0	loss	-	-1	germline	1	0.083265209217566	0.270038029357539
15	77037182	77039973	1	loss	A	-1	somatic	0	0.0832776814341713	0.270059690856585
15	97271932	97288678	1	loss	A	-1	germline	1	2.22185058429333e-05	1.23688575008885e-05
16	577737	605647	2	neutral	AA	16.2338	somatic	0	0.873652391038	0.993593440664793
16	845673	848464	4	gain	AABB	29.5849	germline	1	0.0832853040892897	0.27007292906371
16	1024297	1027088	6	gain	AAAABB	13.7927	germline	1	0.083275602626316	0.270056080518654
16	7195198	7203571	2	neutral	AA	100	somatic	0	0.798693675278322	0.955270251583645
16	21557684	21582803	4	gain	AABB	2.69942	germline	1	2.03858840060469e-07	3.05049568938287e-08
16	22615473	22699203	4	gain	AABB	1.08289	germline	1	1.09256684107906e-20	0
16	25328325	25331116	0	loss	-	-1	germline	1	0.083265209217566	0.270038029357539
16	25347862	25716274	2	neutral	AA	10.0435	somatic	0	0.387109442988814	0.368343546067136
16	25978628	31535509	2	neutral	AA	5.90914	somatic	0	0.822773727374244	0.710923514583004
16	31535509	31948577	2	neutral	AA	37.2555	germline	1	7.70230126480327e-13	1.9641510640156e-11
16	34061364	34064155	26	gain	AAAAAAAAAAAAAAAAABBBBBBBBB	20.1746	germline	1	0.083265209217566	0.270038029357528
16	34083692	34086483	16	gain	AAAAAAAAAAAAAAAA	26.725	germline	1	0.0832659020787896	0.270039232740867
16	34086483	34094856	2	neutral	AA	36.3786	germline	1	0.00794880100001872	0.0160453183419099
16	34094856	34100438	8	gain	AAAAABBB	1.29825	germline	1	0.0143076274949095	0.0366340157786476
16	35082870	35225211	2	neutral	AA	100	germline	1	0.00011377956111393	0.00546147664654584
16	35230793	35281031	4	gain	AAAB	79.348	germline	1	9.27199721171472e-13	3.44169137633799e-15
16	35281031	35294986	4	gain	AABB	-1	germline	1	0.0832846110972883	0.27007172557076
16	35294986	35523848	4	gain	AABB	4.2886	germline	1	1.82022158801558e-53	0
16	35523848	35624324	2	neutral	AA	100	somatic	0	9.15641557344369e-06	0.000274775767079127
16	35987154	36123913	2	neutral	AA	2.30515	germline	1	0.000237167689612551	0.00267470319966112
16	36123913	36126704	4	gain	-	-1	germline	1	0.0832811462073446	0.270065708164734
16	36126704	46470150	2	neutral	AA	-1	somatic	0	6.03603220239352e-15	1.18793863634892e-13
16	46470150	47687026	2	neutral	AA	14.8167	germline	1	0.0326580844165855	0.124959341690154
16	47687026	47709354	4	gain	-	-1	germline	1	9.65372492252403e-07	2.2586465397989e-07
16	63366864	63431057	2	neutral	AA	70.038	somatic	0	0.183298695557471	0.102777563944695
16	75156048	76579458	2	neutral	AA	8.83912	somatic	0	0.000334628169112594	0.00421734571590626
17	10985376	11004913	1	loss	A	-1	somatic	0	0.000132502033540643	0.000214483095131612
17	13039552	13056298	2	neutral	AA	100	germline	1	0.0942757470324851	0.160144975004922
17	21289748	21303703	4	gain	AABB	0.271575	germline	1	0.000107634129191745	9.08866062809821e-05
17	21842366	21853530	3	gain	-	-1	germline	1	0.0143256766634044	0.0366695889996977
17	21853530	21859112	5	gain	-	-1	germline	1	0.0143111263709372	0.0366389546975254
17	21859112	21870276	3	gain	-	-1	germline	1	0.000552387893993134	0.000699696284836349
17	21870276	21873067	4	gain	-	-1	germline	1	0.0832818391759916	0.27006691163811
17	21873067	21967961	3	gain	-	-1	germline	1	8.40142043084676e-23	0
17	21967961	21981916	19	gain	-	-1	germline	1	0.00269988565948652	0.00495767136514524
17	21981916	21987498	6	gain	AAAABB	-1	germline	1	NA	NA
17	21987498	22157749	6	gain	AAAABB	0.314682	germline	1	4.24470377099622e-10	1.02358121978341e-11
17	22157749	22160540	4	gain	AABB	3.60571	germline	1	0.0832866900873054	0.270075336061352
17	26782436	26796391	4	gain	-	-1	germline	1	0.0001077295099007	9.10623818106693e-05
17	26796391	26801973	3	gain	-	-1	germline	1	0.0144528599342025	0.0369512833861738
17	26801973	26827092	4	gain	-	-1	germline	1	4.60077418635489e-06	1.6671689707648e-06
17	26827092	26877330	3	gain	-	-1	somatic	0	1.98989061390323e-12	6.44484465794903e-13
17	35529430	35682935	2	neutral	AA	17.6626	somatic	0	0.371302349665927	0.763775663212812
17	41136549	41192369	2	neutral	AA	100	somatic	0	0.0325226708804593	0.108021654191232
17	41865000	41929193	2	neutral	AA	54.5678	somatic	0	0.0545555580698795	0.202271329016673
17	44402019	44421556	2	neutral	AA	54.5678	somatic	0	0.562255319009971	0.705539944012729
17	50475235	50907840	2	neutral	AA	100	somatic	0	0.6574272032265	0.499793918741389
17	51373937	51457667	2	neutral	AA	95.5584	somatic	0	0.0346187821561226	0.0772774698341839
17	57377378	57410870	2	neutral	AA	46.4068	somatic	0	0.205204184064997	0.684434592193907
17	65574545	66289041	2	neutral	AA	100	somatic	0	0.25616086375977	0.443704913891101
17	66289041	66294623	1	loss	A	-1	somatic	0	0.0143424858900922	0.0367035434643974
17	66294623	66364398	2	neutral	AA	100	somatic	0	0.339830835070229	0.326153560592903
17	70098756	70104338	2	neutral	AA	100	somatic	0	0.265721901230165	0.706382927840921
17	79507217	79521172	2	neutral	AA	100	germline	1	0.318285335967776	0.185372763465934
17	80927836	80930627	4	gain	AAAB	9.19739	somatic	0	0.0832866900873054	0.270075336061352
17	82585690	82588481	5	gain	AAABB	7.92616	germline	1	0.0832804532433683	0.270064504695273
18	5305691	5308482	1	loss	A	-1	germline	1	0.0832887691193614	0.270078946587187
18	41284472	41290054	1	loss	A	-1	germline	1	0.0143306026483557	0.0367051924391996
18	50983197	51122747	2	neutral	AA	28.9509	somatic	0	0.821520116421466	0.289176028787988
18	54653362	54698018	2	neutral	AA	75.4344	somatic	0	0.469014923254957	0.678200500374793
18	55080385	55083176	2	neutral	AA	100	somatic	0	0.721541423676667	0.860457661508323
18	55549273	55560437	2	neutral	AA	54.5679	somatic	0	0.668819780607501	0.603367594268283
18	58644492	58700312	2	neutral	AA	100	somatic	0	0.622255880588957	0.0608964659077988
18	63221732	63227314	2	neutral	AA	100	somatic	0	0.798330304687765	0.711104100586981
18	64544666	64547457	1	loss	A	-1	somatic	0	0.0833151071643409	0.270124682963861
18	65532680	65538262	4	gain	AAAB	93.988	germline	1	0.0143122199244731	0.0366406011332753
18	66838868	66855614	2	neutral	AA	100	somatic	0	0.549744421923984	0.812957307930485
18	68122728	68139474	2	neutral	AA	21.8868	somatic	0	0.113066942837022	0.0541962361580219
18	68653018	68669764	2	neutral	AA	55.0709	somatic	0	0.524769135459361	0.333954893535128
18	72005009	72010591	2	neutral	AA	100	somatic	0	0.99280925690598	0.967176679560021
18	73233049	73252586	2	neutral	AA	27.3876	somatic	0	0.143246329709728	0.109330314203846
18	74614594	74617385	3	gain	AAB	51.0952	somatic	0	0.08331441397147	0.270123479302567
18	74773681	74787636	2	neutral	AA	100	somatic	0	0.968781051351825	0.809647936813084
18	78438264	78468965	2	neutral	AA	43.4377	somatic	0	0.0887172862195445	0.146683591472235
18	78784348	78820631	2	neutral	AA	100	somatic	0	0.207933647741304	0.249467668786957
18	79200207	79202998	5	gain	AAABB	27.6478	somatic	0	0.0832811462073446	0.270065708164734
19	295846	312592	2	neutral	AA	15.5925	germline	1	0.00361321999630844	0.0075585175834505
19	452142	460515	2	neutral	AA	29.5379	somatic	0	0.819799001794765	0.996555245147294
19	2760299	2782627	2	neutral	AA	36.3786	somatic	0	0.452419096313333	0.672628739128998
19	7449179	7451970	9	gain	AAAAAABBB	2.98422	germline	1	0.0832679806904824	0.270042842914373
19	8880962	8984229	2	neutral	AA	0.953662	somatic	0	0.37751352394271	0.112074416210683
19	10519279	10611382	2	neutral	AA	81.1035	germline	1	6.98464550218889e-05	0.00310272519456933
19	11208656	11250521	2	neutral	AA	15.0496	germline	1	0.0119491008890586	0.0496462168404394
19	16014758	16070578	2	neutral	AA	100	somatic	0	0.00346618564372037	0.000502237583520526
19	16238038	16288276	2	neutral	AA	14.562	somatic	0	0.031524737151016	0.162387211855988
19	19924949	19975187	2	neutral	AA	12.7068	somatic	0	0.0384714253781374	0.0429511885005597
19	21044140	21130661	2	neutral	AA	9.09465	somatic	0	0.0139595600028628	0.0354225835869084
19	21554893	21588385	2	neutral	AA	0.391003	germline	1	0.047969739837439	0.0881285585692445
19	24331938	24351475	3	gain	AAB	0.93733	germline	1	4.6056971401981e-06	1.66732629369726e-06
19	24351475	24404504	4	gain	AABB	0.409912	somatic	0	4.27658962656796e-12	2.54241072639161e-14
19	27301562	27337845	2	neutral	AA	45.5495	somatic	0	0.0007723902761781	0.00373327134690926
19	27337845	27340636	5	gain	AAABB	1.71892	germline	1	0.0832797602840629	0.270063301229726
19	27340636	27346218	3	gain	AAB	8.97236	germline	1	0.0159714048724734	0.0416434446030791
19	27346218	27379710	6	gain	AAAABB	0.140473	germline	1	9.22730055862331e-09	5.58459278821033e-10
19	27379710	27382501	3	gain	AAB	6.08282	germline	1	0.0833726584606805	0.270224600497545
19	27382501	27399247	6	gain	AAAABB	0.22624	germline	1	2.21066158195361e-05	1.22960475357203e-05
19	30460974	30494466	2	neutral	AA	10.5436	somatic	0	0.533406944902881	0.881881724839863
19	33863203	33882740	2	neutral	AA	29.4745	somatic	0	0.375882781540682	0.580195086110225
19	34301390	34415821	2	neutral	AA	64.6022	somatic	0	0.021466427330019	0.046890324104981
19	44750894	44904399	2	neutral	AA	100	somatic	0	1.64414186560869e-05	6.40854215137043e-05
19	51630709	51644664	1	loss	A	-1	germline	1	0.000108124957228314	9.14272227739987e-05
19	52437308	52445681	2	neutral	AA	13.8332	somatic	0	0.541626649295976	0.664334733419807
19	56995011	57000593	2	neutral	AA	100	somatic	0	0.153389637324049	0.164335735688076
20	64193	66984	10	gain	-	-1	germline	1	0.0832672878152478	0.27004163951929
20	66984	86521	3	gain	-	-1	somatic	0	1.77610161086249e-05	7.41738479775877e-05
20	1004760	1585288	2	neutral	AA	13.8948	somatic	0	5.17654217335298e-55	0
20	7418478	7424060	1	loss	A	-1	somatic	0	0.0143971948635139	0.036887969516448
20	21303703	21309285	1	loss	A	-1	somatic	0	0.014367101397103	0.0367953248988973
20	26207490	26307966	2	neutral	AA	2.48534	somatic	0	0.203429534127035	0.273795946780935
20	26316339	26319130	0	loss	-	-1	germline	1	0.083265209217566	0.270038029357539
20	28780792	28789165	8	gain	-	-1	germline	1	0.00270026409500157	0.0049583397663695
20	28803120	28822657	9	gain	-	-1	germline	1	4.59446593590088e-06	1.66392083300604e-06
20	28836612	28839403	4	gain	-	-1	germline	1	0.0832873830933197	0.270076539566046
20	28870104	28872895	10	gain	-	-1	germline	1	0.0832679806904824	0.270042842914373
20	29263635	29266426	6	gain	-	-1	germline	1	0.083275602626316	0.270056080518654
20	29266426	29313873	3	gain	-	-1	germline	1	1.38946469468384e-10	5.38086242229951e-11
20	29408767	29411558	5	gain	-	-1	germline	1	0.0832804532433683	0.270064504695273
20	29687867	29858118	3	gain	-	-1	somatic	0	1.47737910161679e-07	4.91880332076366e-06
20	29886028	29891610	4	gain	-	-1	germline	1	0.0143114544292586	0.0366396132640576
20	29891610	29894401	7	gain	-	-1	germline	1	0.083272830947898	0.270051266789565
20	31066621	31074994	54	gain	-	-1	germline	1	0.0143060969739478	0.0366313819267663
20	31161515	31164306	3	gain	-	-1	germline	1	0.0833081754458613	0.270112646527187
20	31164306	31167097	5	gain	-	-1	germline	1	0.0832762955575971	0.270057283960713
20	31167097	31183843	3	gain	-	-1	germline	1	2.24797470800068e-05	1.26278101226784e-05
20	31183843	31189425	19	gain	-	-1	germline	1	0.0143063156109567	0.0366320403742034
20	31225708	31231290	4	gain	AAAB	19.1617	germline	1	0.0143120012078692	0.0366406011332753
20	31231290	31239663	3	gain	AAA	13.0611	germline	1	0.00271179969270966	0.00497541193263784
20	31239663	31242454	60	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	16.5186	germline	1	0.083265209217566	0.270038029357528
20	31242454	31245245	3	gain	AAA	2.98409	germline	1	0.0833081754458613	0.270112646527187
20	31245245	31248036	2	neutral	AA	72.6922	somatic	0	0.717932539028593	0.858611587197545
20	34653056	34655847	1	loss	A	-1	somatic	0	0.0832707522381255	0.270047656533863
20	43642867	43645658	0	loss	-	-1	germline	1	0.083265209217566	0.270038029357539
20	54030969	54042133	1	loss	A	-1	germline	1	0.000537883261180578	0.000681494698550722
20	61044752	61047543	4	gain	AAAB	68.6178	germline	1	0.0832832251272982	0.270069318596606
20	62496072	62498863	1	loss	A	-1	somatic	0	0.0832950064677682	0.270089778376053
20	64092524	64095315	1	loss	A	-1	somatic	0	0.0832790673294283	0.270062097768105
21	8989811	8995393	9	gain	AAAAAABBB	0.864736	germline	1	0.014307190188468	0.0366330280647753
21	10650456	10692321	6	gain	AAAABB	2.40874	germline	1	9.14258199479177e-11	1.38522526782481e-12
21	10692321	10695112	53	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	21.1794	germline	1	0.083265209217566	0.270038029357528
21	10695112	10739768	6	gain	AAAAAB	98.7256	germline	1	4.26918641841633e-12	2.54241072639161e-14
21	20586416	20589207	0	loss	-	-1	germline	1	0.0832679806904824	0.270042842914384
21	30413527	30421900	2	neutral	AA	36.3791	germline	1	0.463379947624208	0.600984271077527
21	37128673	37181702	2	neutral	AA	25.5936	somatic	0	0.400255361261636	0.660061855093416
21	39743840	39749422	2	neutral	AA	36.3786	somatic	0	0.730477522339036	0.618608860992837
21	41803598	41806389	4	gain	AABB	7.96169	germline	1	0.083285997085962	0.270074132560574
21	43335857	43338648	3	gain	AAB	13.9548	germline	1	0.0832929273095922	0.270086167744521
21	45850548	45900786	2	neutral	AA	8.39506	somatic	0	0.000117612370660794	0.00415163897063431
22	11627306	11630097	4	gain	AAAB	100	germline	1	0.0832832251272982	0.270069318596606
22	17876355	17879146	4	gain	AAAA	14.102	germline	1	0.0832873830933197	0.270076539566046
22	18730401	18733192	11	gain	AAAAAAAABBB	17.2086	germline	1	0.0832665949446835	0.270040436128121
22	20915754	20946455	2	neutral	AA	54.5679	germline	1	0.206666197534456	0.523090976888347
22	23290895	23296477	1	loss	A	-1	somatic	0	0.0143402400035607	0.0366999159479662
22	27100610	27117356	2	neutral	AA	100	germline	1	0.325455819209946	0.683235531779212
22	29118503	29121294	4	gain	AAAA	11.4998	germline	1	0.0832818391759916	0.27006691163811
22	35601996	35643861	2	neutral	AA	27.3716	somatic	0	0.948679064190791	0.923812362273864
22	36746306	36751888	1	loss	A	-1	germline	1	0.0144069817032159	0.0369264105939895
22	38965151	38990270	1	loss	A	-1	germline	1	9.71358406444955e-07	2.2715915315441e-07
X	26081895	26087477	1	loss	A	-1	germline	1	0.0143781877818075	0.0368429452485344
X	32861234	32922636	1	loss	A	-1	germline	1	4.60540608887013e-16	0
X	38814437	38836765	2	neutral	AA	100	somatic	0	0.12954000174217	0.286535379696543
X	41016536	43411214	2	neutral	AA	13.603	somatic	0	1.36101248881301e-23	0
X	48836918	48959722	2	neutral	AA	54.5678	somatic	0	0.000950399676316476	0.000454816034813232
X	52364742	52797347	2	neutral	AA	100	germline	1	0.0201272748572168	0.0798596556525986
X	52797347	52811302	2	neutral	AA	-1	germline	1	0.268640346468774	0.513040717328363
X	52811302	52867122	2	neutral	AA	2.98193	germline	1	0.192217421842887	0.290377989921874
X	54843150	54873851	2	neutral	AA	100	somatic	0	0.603837799422365	0.84778014970492
X	58449122	62688651	2	neutral	AA	1.00338	somatic	0	3.37203512734616e-11	1.19679509635873e-08
X	63249642	63285925	3	gain	AAB	92.1042	germline	1	9.69266407851441e-07	2.26498795830032e-07
X	70751850	70779760	2	neutral	AA	100	somatic	0	0.952042017102543	0.985192110427434
X	74779263	74784845	2	neutral	AA	54.5678	somatic	0	0.249748287489155	0.460132335626389
X	77863318	77868900	1	loss	A	-1	germline	1	0.0144378100384154	0.0370276513470633
X	79666304	79671886	0	loss	-	-1	germline	1	0.0143130948203733	0.0366524573816943
X	82669420	82767105	2	neutral	AA	41.8046	somatic	0	1.54548703962317e-06	8.86451443915526e-07
X	96501616	96551854	2	neutral	AA	100	somatic	0	0.00488435712829676	0.0257322540789171
X	101410985	101424940	2	neutral	AA	54.5678	somatic	0	0.0320966953758157	0.220575918076094
X	108773643	108776434	0	loss	-	-1	germline	1	0.083265209217566	0.270038029357539
X	114804994	114807785	1	loss	A	-1	somatic	0	0.0832707522381255	0.270047656533863
X	119482710	119510620	2	neutral	AA	100	somatic	0	0.0448528571439807	0.0281492881243979
X	141788382	141791173	0	loss	-	-1	germline	1	0.083265209217566	0.270038029357539
X	144545890	144557054	1	loss	A	-1	germline	1	0.000534959100292148	0.000675547025206003
X	155559176	155567549	1	loss	A	-1	germline	1	0.00299010271908691	0.00592128193763453
