chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	1098378	1100880	5	gain	-	-1	germline	1	0.0832718505489481	0.27004963500281
1	5669532	5677038	3	gain	-	-1	germline	1	0.00270187852302015	0.0049611311397425
1	16613280	16635798	8	gain	-	-1	somatic	0	0.000532146395215472	0.000671042283307388
1	16720866	16725870	5	gain	-	-1	somatic	0	0.0143081927514462	0.036635118513681
1	16903512	16943544	3	gain	-	-1	germline	1	4.35744474486574e-08	4.17823142750962e-09
1	31430124	31432626	6	gain	-	-1	germline	1	0.083270628148261	0.270047511959014
1	55661994	55666998	0	loss	-	-1	germline	1	0.0143100252276919	0.0366417989104432
1	103560282	103762944	3	gain	-	-1	somatic	0	2.01983177599086e-09	8.06904543182441e-11
1	125069976	125074980	3	gain	-	-1	germline	1	0.0143184186845256	0.0366598122456878
1	125079984	125082486	10	gain	-	-1	germline	1	0.0832700169533685	0.270046450441686
1	125082486	125084988	5	gain	-	-1	germline	1	0.0832724617547428	0.270050696529276
1	125162550	125165052	6	gain	-	-1	germline	1	0.083270628148261	0.270047511959014
1	151861392	151966476	2	neutral	AA	42.0816	somatic	0	0.0234377191364545	0.0933676326387325
1	160976178	161008704	2	neutral	AA	100	somatic	0	0.0302854766326519	0.0252865538331724
1	169257798	169272810	1	loss	A	-1	germline	1	6.2281553560551e-05	4.02977494889933e-05
1	206007174	206024688	1	loss	A	-1	germline	1	2.23133774081579e-05	7.95800978403705e-06
1	207185616	207340740	2	neutral	AA	31.9263	somatic	0	0.00106043269643808	0.00688380170511826
1	207368262	207373266	1	loss	A	-1	germline	1	0.0143800066399548	0.0368526317137849
1	209910294	209912796	0	loss	-	-1	germline	1	0.0832657386908731	0.270039019905675
1	224011566	224014068	8	gain	AAAAAAAA	1.492	germline	1	0.083270628148261	0.270047511959014
1	227999754	228012264	2	neutral	AA	100	somatic	0	0.890702494702535	0.761083564475498
1	228067308	228072312	1	loss	A	-1	germline	1	0.0143774882794484	0.0367639763348246
1	228172392	228427596	2	neutral	AA	13.0628	somatic	0	0.0304136093553414	0.0189227059442195
1	230749452	230754456	2	neutral	AA	36.3786	somatic	0	0.616380580110706	0.619833336566062
1	234775170	234777672	5	gain	AAABB	100	germline	1	0.0832736841772344	0.270052819591347
1	234777672	234782676	7	gain	AAAAABB	11.9743	germline	1	0.0143078069933511	0.0366339568143337
1	236096226	236098728	14	gain	AAAAAAAAABBBBB	89.1691	germline	1	0.0832687945744856	0.270044327416165
1	248913972	248926482	3	gain	-	-1	somatic	0	0.011213136594671	0.0579103470889852
2	207666	220176	2	neutral	AA	11.636	somatic	0	0.0300940076002348	0.0151639454347133
2	3170034	3180042	2	neutral	AA	62.0174	somatic	0	0.70191131219118	0.971248484299599
2	3180042	3182544	7	gain	AAAAAAA	12.7918	germline	1	0.083270628148261	0.270047511959014
2	3182544	3185046	2	neutral	AA	100	somatic	0	0.255651867433108	0.499103418316606
2	6465168	6497694	2	neutral	AA	54.5681	somatic	0	0.17982940811147	0.419549975356822
2	7453458	7468470	2	neutral	AA	27.9182	somatic	0	0.224681964660642	0.381543926661374
2	11419128	11424132	2	neutral	AA	100	somatic	0	0.0930726507485862	0.117438428795556
2	12357378	12412422	2	neutral	AA	100	somatic	0	0.242602670338191	0.102982305196469
2	14338962	14406516	2	neutral	AA	54.5978	somatic	0	0.0850058678085146	0.167338386083686
2	17831754	17854272	2	neutral	AA	36.4078	germline	1	0.287027111987674	0.272358173142707
2	24319440	24369480	2	neutral	AA	100	germline	1	0.907478030072379	0.745913655899911
2	27884790	28077444	2	neutral	AA	15.7184	somatic	0	0.000322786350027761	0.00451256206630168
2	34472556	34505082	1	loss	A	-1	germline	1	1.5068308144818e-08	7.01114610812681e-10
2	36509184	36534204	2	neutral	AA	100	somatic	0	0.896075228991653	0.995230956282587
2	39466548	39471552	2	neutral	AA	54.5678	somatic	0	0.674739975106743	0.600104575439893
2	39551616	39556620	2	neutral	AA	100	germline	1	0.88484149669531	0.937782079941123
2	51326028	51388578	2	neutral	AA	100	germline	1	0.434849416015465	0.488471576235877
2	54801306	54811314	2	neutral	AA	54.5678	somatic	0	0.393033376285639	0.662933436237477
2	56887974	56897982	2	neutral	AA	62.2036	somatic	0	0.756472787095977	0.997684634159897
2	65947716	66075318	2	neutral	AA	43.3357	somatic	0	0.000849820444764147	0.00340047842137325
2	71617248	71627256	2	neutral	AA	40.2447	somatic	0	0.982495600068612	0.862785999398445
2	71727336	71782380	2	neutral	AA	100	somatic	0	0.166752686230294	0.295098561538964
2	73596330	73721430	2	neutral	AA	34.3532	somatic	0	0.00359588300826982	0.00470458076386493
2	74119248	74124252	2	neutral	AA	100	somatic	0	0.736225926468349	0.983057552201663
2	79238340	79243344	2	neutral	AA	54.5678	somatic	0	0.861908551950027	0.871967528241344
2	89771760	89774262	4	gain	-	-1	germline	1	0.0832755178382276	0.270056004207298
2	89774262	89781768	7	gain	-	-1	germline	1	0.00270033189551344	0.00495812332599421
2	89781768	89789274	5	gain	-	-1	germline	1	0.00270073604959499	0.00495877192871197
2	89789274	89796780	3	gain	-	-1	germline	1	0.0136971383412615	0.0798997549065105
2	89796780	89814294	5	gain	AAAAA	3.71952	germline	1	2.21036100137374e-05	1.22939788919085e-05
2	89814294	89824302	4	gain	AAAB	6.99105	germline	1	0.00053252002479094	0.000671776801827728
2	89824302	89826804	8	gain	AAAAAABB	18.1418	germline	1	0.083270628148261	0.270047511959014
2	89826804	89841816	30	gain	AAAAAAAAAAAAAAAAAAAABBBBBBBBBB	7.10849	germline	1	2.20953269889472e-05	1.22904707047233e-05
2	89841816	89851824	4	gain	AAAB	44.2583	germline	1	0.000532316196548407	0.000671212539358645
2	91410570	91415574	4	gain	-	-1	germline	1	0.01430935008078	0.0366365706831906
2	96404562	96412068	2	neutral	AA	91.0724	somatic	0	0.42010035602382	0.810162417838546
2	100950696	100955700	2	neutral	AA	54.5678	somatic	0	0.177395280204478	0.27408511277572
2	107475912	107490924	2	neutral	AA	100	somatic	0	0.986077416215876	0.967831315091573
2	112517442	112559976	2	neutral	AA	100	somatic	0	0.657754201896767	0.420677825227711
2	113185476	113207994	2	neutral	AA	90.9291	somatic	0	0.0415378841713448	0.0485113652749557
2	117041058	117046062	1	loss	A	-1	germline	1	0.0161896469134921	0.0423544690847248
2	120944178	120966696	2	neutral	AA	54.5678	germline	1	0.0948684915891918	0.134264007800476
2	125685468	125692974	1	loss	A	-1	somatic	0	0.00485639961837058	0.00850031656554995
2	125985708	126110808	2	neutral	AA	100	somatic	0	0.440378170880222	0.75433679886711
2	126916452	126921456	1	loss	A	-1	somatic	0	0.0206720124568733	0.0563274092233846
2	129733704	129743712	2	neutral	AA	34.6546	somatic	0	0.374441272614685	0.349297698354497
2	132243210	132245712	4	gain	AABB	6.38572	germline	1	0.0832779627704302	0.270060250404542
2	132268230	132280740	2	neutral	AA	0.859598	somatic	0	0.396792295223209	0.858330098639747
2	134647632	134760222	2	neutral	AA	63.6008	somatic	0	0.415395171489166	0.315575609882674
2	135035442	135170550	2	neutral	AA	6.44574	somatic	0	0.0430291664645023	0.111257043483401
2	139251312	139268826	2	neutral	AA	100	germline	1	0.0109230890414059	0.00645277369067132
2	146296944	146336976	2	neutral	AA	98.7272	somatic	0	0.642007152483264	0.888582350589518
2	147310254	147345282	2	neutral	AA	100	somatic	0	0.924225158899905	0.929672875390236
2	147602988	147625506	2	neutral	AA	22.7104	somatic	0	0.125026879532791	0.335255452604706
2	148261014	148266018	2	neutral	AA	100	somatic	0	0.389325307435758	0.563828536826455
2	150600384	150605388	2	neutral	AA	100	somatic	0	0.963773247997568	0.87228936882545
2	155949660	156147318	2	neutral	AA	48.3451	somatic	0	0.00204285258276582	0.00397674585499741
2	156307446	156334968	2	neutral	AA	36.3868	somatic	0	0.866305304464782	0.737499282100654
2	160585866	160590870	2	neutral	AA	100	somatic	0	0.300334453004408	0.704514190002673
2	161474076	161479080	1	loss	A	-1	somatic	0	0.0253780335898512	0.0534992785226032
2	171246888	171276912	2	neutral	AA	100	somatic	0	0.851123028581381	0.666820824682592
2	180384192	180421722	2	neutral	AA	100	somatic	0	0.0373968057263189	0.0648339286097356
2	184359870	184372380	2	neutral	AA	36.3786	somatic	0	0.516276715010579	0.677165512836862
2	187067034	187077042	2	neutral	AA	54.5678	somatic	0	0.501864222875315	0.778700074968736
2	200762982	200848050	2	neutral	AA	100	somatic	0	0.0132402399693691	0.0207640241525072
2	202784598	202794606	2	neutral	AA	54.5678	somatic	0	0.498522171387591	0.404424727264065
2	203292504	203302512	2	neutral	AA	54.5678	germline	1	0.0191203833377212	0.075698405141189
2	208706832	208711836	2	neutral	AA	6.61234	somatic	0	0.911559387763709	0.810008776476352
2	212319720	212324724	2	neutral	AA	27.2839	somatic	0	0.778730216741755	0.900935692578304
2	213115356	213147882	2	neutral	AA	57.4569	somatic	0	0.126547964674187	0.100510720482118
2	215887572	216002664	2	neutral	AA	72.0133	somatic	0	0.264856870919995	0.260753095009108
2	217223640	217238652	2	neutral	AA	100	somatic	0	0.0523458862788269	0.068180689630276
3	2314350	2326860	2	neutral	AA	36.3786	somatic	0	0.941100196393519	0.517287054436209
3	7085664	7270812	1	loss	A	-1	germline	1	6.06678443755152e-46	0
3	14378994	14396508	2	neutral	AA	18.1893	somatic	0	0.456126791769798	0.656879632441319
3	32060628	32068134	1	loss	A	-1	somatic	0	0.00601978005869013	0.01014043753167
3	32728662	32778702	2	neutral	AA	54.5683	somatic	0	0.83970771862383	0.69327651225375
3	37279800	37419912	2	neutral	AA	100	somatic	0	4.98555359554832e-06	0.000147407866355143
3	39386484	39471552	2	neutral	AA	36.3054	germline	1	0.0898683104619611	0.198154811591016
3	52992360	53004870	1	loss	A	-1	germline	1	0.00020453907826688	0.000267639632124395
3	68584824	68592330	1	loss	A	-1	somatic	0	0.00693378232154418	0.00954713098287485
3	68689908	68699916	1	loss	A	-1	germline	1	0.00119868965103139	0.00158648184738719
3	72470430	72495450	2	neutral	AA	37.3553	somatic	0	0.624356925236826	0.792168084565363
3	75670488	75930696	2	neutral	AA	0.339914	germline	1	0.00128765862954162	0.00498615842727979
3	77777172	77784678	3	gain	AAB	1.05643	somatic	0	0.00280822116995136	0.0053167637814342
3	80011458	80016462	1	loss	A	-1	somatic	0	0.0166764803166954	0.0438136827494052
3	93777462	93794976	3	gain	AAB	100	somatic	0	0.000176148469275142	0.000204338753073352
3	98688888	98696394	1	loss	A	-1	somatic	0	0.00579481075878057	0.0102994245041207
3	103049874	103129938	2	neutral	AA	100	somatic	0	0.605555892751052	0.508917571731135
3	108008838	108251532	2	neutral	AA	100	germline	1	0.000110429391856191	0.00030876194286511
3	111524148	111531654	1	loss	A	-1	somatic	0	0.00868932664465814	0.0163107624587688
3	128685366	128695374	3	gain	AAB	6.65769	germline	1	0.000532808905962734	0.000671819405717144
3	134857800	134892828	2	neutral	AA	100	somatic	0	0.722798392606225	0.93476945488312
3	139113702	139118706	1	loss	A	-1	somatic	0	0.0234622329752941	0.0651949473309705
3	146667240	146672244	1	loss	A	-1	somatic	0	0.022415053607569	0.056104643277935
3	162807642	162827658	1	loss	A	-1	germline	1	2.58430003222229e-06	7.58952994228679e-07
3	176461056	176548626	2	neutral	AA	100	somatic	0	0.457342397562366	0.210302667949466
3	185453244	185458248	1	loss	A	-1	somatic	0	0.036854923242247	0.109502696954106
3	191345454	191355462	1	loss	A	-1	somatic	0	0.00186976834141988	0.00191677193874296
3	191738268	191985966	2	neutral	AA	49.6859	somatic	0	0.319566637335457	0.312854026124371
3	193887486	193952538	2	neutral	AA	46.4193	somatic	0	0.659412843276157	0.341812310611435
3	197207640	197212644	1	loss	A	-1	somatic	0	0.0222702750820449	0.049987331922798
4	187650	207666	2	neutral	AA	100	germline	1	0.0109988399511681	0.0316922848209128
4	14454054	14461560	2	neutral	AA	100	somatic	0	0.107405428093454	0.311516776230687
4	19262898	19393002	2	neutral	AA	69.2155	somatic	0	0.008613421969385	0.00311347565798636
4	23473764	23638896	2	neutral	AA	100	germline	1	0.30179421803664	0.559794012401718
4	25107570	25175124	2	neutral	AA	54.5678	somatic	0	0.0312649383800667	0.0284376837306277
4	28092456	28124982	2	neutral	AA	29.023	somatic	0	0.0146047210500577	0.0175494043117996
4	30544416	30589452	2	neutral	AA	100	somatic	0	0.532681320656926	0.903973830001851
4	40292208	40294710	3	gain	AAB	100	germline	1	0.0833121979271658	0.270119702283165
4	40294710	40297212	6	gain	AAABBB	14.0538	germline	1	0.083270628148261	0.270047511959014
4	42761682	42766686	1	loss	A	-1	somatic	0	0.0150007568518777	0.0377525027942688
4	43542306	43572330	2	neutral	AA	100	somatic	0	0.14134076166342	0.069871789512324
4	45591444	45611460	2	neutral	AA	100	germline	1	0.466197351210948	0.454577213901052
4	49089240	49091742	9	gain	AAAAAABBB	100	somatic	0	0.083270628148261	0.270047511959014
4	55661994	55672002	2	neutral	AA	100	somatic	0	0.312926797502824	0.495435284214578
4	56069820	56082330	2	neutral	AA	100	germline	1	0.399978637163649	0.383868583658563
4	60956226	61006266	2	neutral	AA	31.8321	somatic	0	0.0124811918874369	0.0321712928521765
4	62802702	62812710	1	loss	A	-1	somatic	0	0.00116733327714568	0.00165072857133908
4	63200520	63203022	0	loss	-	-1	somatic	0	0.08326940576211	0.270045388927409
4	63828522	63851040	1	loss	A	-1	germline	1	1.07595351683885e-05	7.5275841101563e-06
4	74559600	74564604	1	loss	A	-1	somatic	0	0.0222324341037778	0.0563755149638886
4	91010250	91015254	1	loss	A	-1	somatic	0	0.020511945705505	0.0523812108878902
4	103059882	103064886	2	neutral	AA	100	somatic	0	0.42072559951496	0.506589854894598
4	106134840	106142346	1	loss	A	-1	somatic	0	0.00520870312072885	0.00781858160042914
4	114253830	114261336	1	loss	A	-1	somatic	0	0.00448383478198208	0.00805817048520741
4	114586596	114594102	1	loss	A	-1	somatic	0	0.00519524777134213	0.00954252441005132
4	120576384	120628926	2	neutral	AA	27.2855	somatic	0	0.438387259519311	0.470935738852012
4	129813768	129833784	2	neutral	AA	36.8511	somatic	0	0.932707129226032	0.871770740599817
4	132343290	132443370	2	neutral	AA	87.6488	somatic	0	0.18639986202154	0.114231875782801
4	140652432	140855094	2	neutral	AA	28.0573	somatic	0	0.0836347972549442	0.0236750421604384
4	150190056	150212574	2	neutral	AA	15.8404	somatic	0	0.0150229802096229	0.00276603809185971
4	153660330	153845478	2	neutral	AA	100	somatic	0	0.0231535639213433	0.221779804424563
4	160956162	160963668	1	loss	A	-1	somatic	0	0.00576073855815952	0.0109608506631668
4	165079458	165084462	1	loss	A	-1	germline	1	0.0206911974951583	0.0563932470325563
4	166663224	166668228	1	loss	A	-1	somatic	0	0.020901847636521	0.0552252860959646
4	171452052	171459558	1	loss	A	-1	germline	1	0.0162901314599419	0.0404956658648508
4	172502892	172512900	0	loss	-	-1	germline	1	0.0143115685261528	0.0366412179640697
4	181685232	181747782	2	neutral	AA	100	somatic	0	0.142600435983838	0.220369509401936
4	185518296	185523300	1	loss	A	-1	somatic	0	0.0223039743223146	0.0615328345348898
5	3700458	3712968	2	neutral	AA	54.5678	somatic	0	0.0521857603880758	0.128350703685352
5	7398414	7433442	2	neutral	AA	100	somatic	0	0.371070813073054	0.327111701337808
5	14346468	14348970	4	gain	AABB	69.7766	somatic	0	0.0832816302777608	0.270066619791785
5	20964258	20989278	2	neutral	AA	100	somatic	0	0.606238505539912	0.772596954253513
5	21099366	21452148	2	neutral	AA	100	somatic	0	0.00565417975050766	0.00182009446842712
5	30356766	30524400	2	neutral	AA	66.7636	somatic	0	0.000233486908075829	0.00195011173056714
5	49599648	49602150	188	gain	-	-1	germline	1	0.0832651275250524	0.270037958412707
5	52909794	52912296	1	loss	A	-1	somatic	0	0.0832889656849295	0.27007935889524
5	54651186	54681210	2	neutral	AA	48.0496	somatic	0	0.757525663671673	0.836696443394439
5	58026384	58038894	1	loss	A	-1	germline	1	0.000402843786420328	0.00027947711802101
5	68992650	68997654	2	neutral	AA	100	somatic	0	0.801313531903431	0.990525885129292
5	75728034	75788082	2	neutral	AA	27.2863	somatic	0	0.0405187212760159	0.246024553127543
5	86419080	86421582	0	loss	-	-1	germline	1	0.0832724617547428	0.270050696529283
5	91202904	91207908	1	loss	A	-1	somatic	0	0.0204310661097006	0.0550046225082077
5	99029160	99224316	2	neutral	AA	36.3088	somatic	0	0.645138407680612	0.640147810536501
5	99434484	99467010	1	loss	A	-1	germline	1	6.04811985837265e-08	4.17827639154211e-09
5	99804780	99889848	2	neutral	AA	54.5873	somatic	0	0.551894901042143	0.617542132093826
5	106988022	106993026	1	loss	A	-1	somatic	0	0.0232499359881689	0.0639751032227467
5	116700786	116755830	2	neutral	AA	22.0361	somatic	0	0.915390505586766	0.496175017708882
5	118537254	118544760	1	loss	A	-1	germline	1	0.00386457987569789	0.00945463796807566
5	137517426	137522430	1	loss	A	-1	somatic	0	0.0206285704861698	0.0556480236355038
5	175450248	175457754	2	neutral	AA	54.5678	somatic	0	0.749358248111553	0.928451125438323
5	178585254	178587756	9	gain	AAAAAABBB	23.5692	germline	1	0.083270628148261	0.270047511959014
6	255204	257706	3	gain	AAB	100	germline	1	0.0832963016154625	0.270092098437301
6	257706	382806	4	gain	AABB	0.684593	germline	1	1.62413879569981e-32	0
6	665532	668034	1	loss	A	-1	somatic	0	0.0833580664409967	0.270199340298574
6	1756404	1761408	2	neutral	AA	100	somatic	0	0.690959146465794	0.904811159085132
6	2389410	2399418	1	loss	A	-1	somatic	0	0.00174972774566789	0.00180563352100549
6	6322554	6347574	2	neutral	AA	71.0763	somatic	0	0.0353402410036303	0.100043977924769
6	13863582	13868586	2	neutral	AA	100	somatic	0	0.317066398430774	0.741633510216792
6	15429834	15634998	2	neutral	AA	55.0709	somatic	0	0.000984860573911515	0.00554947918800197
6	17376390	17381394	1	loss	A	-1	somatic	0	0.0200577924068651	0.0529777005904606
6	17574048	17609076	2	neutral	AA	7.88081	germline	1	0.169971797742367	0.403769395793425
6	20959254	20961756	4	gain	AABB	66.8935	germline	1	0.083276129065827	0.27005706575204
6	23741478	23746482	1	loss	A	-1	germline	1	0.0180314700404891	0.0480312909270278
6	24209352	24341958	2	neutral	AA	21.8309	somatic	0	3.91524563244432e-05	0.000377978072006457
6	32490972	32666112	1	loss	A	-1	somatic	0	2.36925367229419e-17	0
6	35293212	35363268	2	neutral	AA	24.5645	somatic	0	0.430059732090959	0.179820157676635
6	35786106	35801118	3	gain	AAB	3.5162	somatic	0	2.26367364293688e-05	1.3300128264282e-05
6	39273894	39286404	2	neutral	AA	19.1631	germline	1	0.0126504980810199	0.0150823298973758
6	41525694	41535702	2	neutral	AA	100	somatic	0	0.529639795577771	0.598656102325871
6	43329636	43352154	2	neutral	AA	54.5678	somatic	0	0.716089001539145	0.771701629870866
6	47097648	47120166	2	neutral	AA	100	somatic	0	0.790619281490128	0.993151970099727
6	47485458	47538000	2	neutral	AA	81.2371	germline	1	0.552852326956005	0.86453644841083
6	51198426	51203430	1	loss	A	-1	somatic	0	0.0222743251789358	0.061368746477906
6	54063216	54070722	0	loss	-	-1	germline	1	0.0143108933150112	0.0366400560954993
6	60230646	60238152	3	gain	-	-1	germline	1	0.00270247630040176	0.00496178010312787
6	60238152	60240654	5	gain	-	-1	germline	1	0.0832730729641715	0.270051758058789
6	76728834	76743846	1	loss	A	-1	germline	1	0.000773883698313428	0.000998477378768459
6	80291682	80341722	2	neutral	AA	100	somatic	0	0.166298716320606	0.525959960594861
6	92859228	92914272	2	neutral	AA	73.0514	somatic	0	0.0697216511831669	0.0670291218520244
6	103290066	103315086	1	loss	A	-1	germline	1	6.21303612037562e-07	8.37610865112026e-08
6	103950594	103975614	2	neutral	AA	100	somatic	0	0.387718561883504	0.247493966490393
6	104135742	104155758	2	neutral	AA	100	somatic	0	0.410785405198912	0.200193154672031
6	118644840	118647342	6	gain	AAAAAA	8.14003	germline	1	0.0832712393467875	0.270048573479389
6	131029740	131054760	2	neutral	AA	36.3915	somatic	0	0.439699786615187	0.616713523605551
6	135948672	135978696	2	neutral	AA	100	germline	1	0.0837460945760969	0.144596515118663
6	141633216	141703272	2	neutral	AA	54.5978	somatic	0	0.79114533667146	0.904125048832078
6	145406232	145443762	2	neutral	AA	100	somatic	0	0.377436325974418	0.610027709285224
6	156635208	156655224	2	neutral	AA	100	germline	1	0.0172082458694333	0.0217920891179133
6	157308246	157310748	7	gain	AAAAABB	21.5243	germline	1	0.083270628148261	0.270047511959014
6	157313250	157315752	6	gain	AAAABB	4.2637	germline	1	0.083270628148261	0.270047511959014
6	165309642	165319650	1	loss	A	-1	somatic	0	0.00146657439787413	0.00172443509525877
6	170038422	170146008	2	neutral	AA	5.20287	somatic	0	1.98394049019523e-05	0.000178008449633338
6	170146008	170148510	4	gain	AAAA	4.43105	somatic	0	0.0832816302777608	0.270066619791785
6	170168526	170171028	0	loss	-	-1	germline	1	0.0832700169533685	0.270046450441692
6	170173530	170186040	2	neutral	AA	64.4717	somatic	0	0.846736874995871	0.886123279472163
7	1781424	1846476	2	neutral	AA	15.7588	somatic	0	0.707656545730719	0.498886869167769
7	9762804	9765306	0	loss	-	-1	somatic	0	0.0832651275250524	0.270037958412713
7	39506580	39511584	1	loss	A	-1	somatic	0	0.0239975077193579	0.0518195670878894
7	51526188	51531192	1	loss	A	-1	somatic	0	0.0265677872641636	0.0554671054347997
7	56367558	56370060	0	loss	-	-1	germline	1	0.0832700169533685	0.270046450441692
7	57485952	57498462	3	gain	AAB	1.14539	germline	1	0.000107926553731223	9.13494174500373e-05
7	57821220	58026384	2	neutral	AA	0.405498	somatic	0	6.44289517194526e-10	1.85512841754942e-08
7	61046298	61056306	3	gain	-	-1	germline	1	0.000532645755123177	0.000671776801827728
7	61056306	61959528	2	neutral	AA	1.89701	somatic	0	7.97100852913079e-10	2.61020935199419e-07
7	62337330	62344836	4	gain	AABB	11.2131	germline	1	0.00270189610298316	0.00496124912729778
7	62344836	62357346	3	gain	AAB	19.6904	germline	1	0.000252247938288287	0.00102354154528272
7	62402382	62407386	4	gain	-	-1	germline	1	0.01430935008078	0.0366371515650959
7	62437410	62454924	3	gain	AAB	3.22914	germline	1	5.67458656816173e-06	3.85673114100538e-06
7	62685108	62702622	1	loss	A	-1	germline	1	8.788304314585e-05	4.48897293775508e-05
7	65224638	65229642	1	loss	A	-1	somatic	0	0.0213365631182933	0.0518965622550916
7	65229642	65752560	2	neutral	AA	40.1942	somatic	0	0.932618564880936	0.31319290862154
7	65797596	65822616	3	gain	AAB	0.158577	germline	1	4.35628276210105e-08	4.17277123965221e-09
7	66052800	66070314	2	neutral	AA	27.284	somatic	0	0.180011035839245	0.329936638340714
7	69633162	69643170	2	neutral	AA	100	somatic	0	0.723372937234033	0.538451938075545
7	70954218	70961724	1	loss	A	-1	germline	1	0.0206052525045656	0.0561185176421576
7	79623648	79628652	1	loss	A	-1	somatic	0	0.020879603944917	0.0568631958843775
7	98241030	98338608	2	neutral	AA	53.35	somatic	0	0.0456135566712628	0.113775180336502
7	100948194	100955700	3	gain	AAB	0.569491	germline	1	0.00270323248603944	0.00496520319709848
7	100955700	100960704	9	gain	AAAAABBBB	3.80604	germline	1	0.0143075176808004	0.0366339568143337
7	100960704	100975716	3	gain	AAB	1.32701	germline	1	2.21506030082449e-05	1.23326323411277e-05
7	106099812	106102314	3	gain	AAB	65.7815	somatic	0	0.083287743080724	0.270077235680866
7	109802772	109812780	1	loss	A	-1	somatic	0	0.00103139684463008	0.00120532440458587
7	114809274	114834294	2	neutral	AA	54.5678	somatic	0	0.0782643462300164	0.0351259610591739
7	119190276	119195280	1	loss	A	-1	germline	1	0.0143622895212623	0.0367983664402305
7	139358898	139494006	2	neutral	AA	29.6178	somatic	0	0.251780897919349	0.412912807606155
7	149016618	149131710	2	neutral	AA	55.6466	somatic	0	0.000156523773894883	0.000288231160419317
7	149514516	149587074	2	neutral	AA	35.2016	germline	1	0.0336295956960168	0.0550680807784574
7	150908130	150910632	4	gain	AAAA	69.1313	somatic	0	0.0832822415417025	0.270067681366986
7	152401824	152406828	12	gain	AAAAAAAAAABB	2.08708	germline	1	0.0143072283734103	0.0366330855609747
7	152406828	152409330	5	gain	AAAAB	4.84984	germline	1	0.0832718505489481	0.27004963500281
7	154598580	154608588	1	loss	A	-1	germline	1	0.0202243007148728	0.0549207796734096
7	155326662	155336670	3	gain	AAB	2.33354	somatic	0	0.00746372441362293	0.0222572286293822
7	157550940	157580964	2	neutral	AA	27.7266	somatic	0	0.0469425672474772	0.179989134344989
7	158148918	158151420	5	gain	AAABB	6.53768	germline	1	0.0832730729641715	0.270051758058789
7	158594274	158596776	5	gain	AAABB	12.3236	germline	1	0.0832730729641715	0.270051758058789
8	643014	650520	1	loss	A	-1	germline	1	0.0273656830114793	0.0542625659555382
8	5737086	5749596	1	loss	A	-1	germline	1	0.000230982911940182	0.00027256120891106
8	15562440	15574950	3	gain	-	-1	germline	1	0.000108078965943142	9.13168435902056e-05
8	38072934	38077938	1	loss	A	-1	germline	1	0.020896738497871	0.056952989107159
8	39376476	39529098	1	loss	A	-1	germline	1	8.83435919703032e-36	0
8	40917708	40922712	1	loss	A	-1	germline	1	0.0192438269758131	0.0437488847174043
8	43237062	43239564	6	gain	-	-1	germline	1	0.083270628148261	0.270047511959014
8	43239564	43242066	9	gain	-	-1	germline	1	0.083270628148261	0.270047511959014
8	43774992	43779996	4	gain	-	-1	germline	1	0.0143124366960564	0.0366432513116328
8	49181814	49191822	2	neutral	AA	15.6479	somatic	0	0.557570127291992	0.554143121595524
8	50117562	50125068	1	loss	A	-1	germline	1	0.00476189850643512	0.00945049654084951
8	66450618	66485646	2	neutral	AA	36.3786	somatic	0	0.923919175328921	0.961004367612932
8	80239140	80301690	2	neutral	AA	54.5787	somatic	0	0.574595238080497	0.748745033438096
8	84222324	84297384	2	neutral	AA	100	somatic	0	0.140144245134648	0.0475053896311217
8	93059388	93064392	1	loss	A	-1	germline	1	0.0256645363882902	0.0523614016605732
8	93862530	93880044	2	neutral	AA	36.3786	somatic	0	0.751077675800062	0.757748920377445
8	98796474	98803980	2	neutral	AA	100	somatic	0	0.961112704532895	0.738287048698412
8	100933182	100983222	2	neutral	AA	54.5681	germline	1	0.344940691968027	0.0675634696056707
8	111281454	111286458	1	loss	A	-1	germline	1	0.0204730887181734	0.0557077460084118
8	114008634	115011936	2	neutral	AA	45.4164	somatic	0	0.0809133400739249	0.0864035576297364
8	116403048	116435574	2	neutral	AA	100	somatic	0	0.206203960855537	0.401394691358504
8	119085192	119092698	2	neutral	AA	54.5678	somatic	0	0.894676410856367	0.999507711264722
8	120121020	120156048	2	neutral	AA	54.5678	somatic	0	0.29857433667427	0.614722326031355
8	126020736	126048258	2	neutral	AA	100	somatic	0	0.0060835256107167	0.00462767357194593
8	126868914	126908946	2	neutral	AA	54.571	somatic	0	0.71256316531074	0.556007885948969
8	128217492	128242512	2	neutral	AA	26.0591	somatic	0	0.930409431566156	0.930018288323528
8	129170754	129185766	2	neutral	AA	100	somatic	0	0.187194449152767	0.256392734445792
8	138195468	138220488	2	neutral	AA	5.68725	germline	1	0.768171738740703	0.542719153562134
8	138620808	138713382	2	neutral	AA	5.86948	somatic	0	0.680372836030491	0.806365901291755
8	142183656	142191162	2	neutral	AA	16.4333	germline	1	0.378326991523545	0.373869881082473
8	142706574	142786638	2	neutral	AA	94.7775	somatic	0	0.00700234577316374	0.0409805049585491
8	144125208	144127710	6	gain	AAAABB	45.0891	germline	1	0.0832712393467875	0.270048573479389
8	144377910	144400428	2	neutral	AA	15.8717	somatic	0	0.738469038698853	0.954619059749155
9	2146716	2151720	1	loss	A	-1	somatic	0	0.0268804868521185	0.0565835345682372
9	4598676	4603680	2	neutral	AA	54.5678	somatic	0	0.478719033717089	0.599111024724651
9	10723572	10838664	2	neutral	AA	100	somatic	0	0.000310673357219913	0.000133222532954225
9	15272208	15282216	2	neutral	AA	54.5678	somatic	0	0.534153469280785	0.37079354687094
9	20869182	21014298	2	neutral	AA	100	somatic	0	0.0046725628788265	0.00619080574697217
9	22272804	22510494	2	neutral	AA	37.9494	somatic	0	0.265799152772307	0.432501269568031
9	23363676	23376186	1	loss	A	-1	germline	1	0.000235152477299694	0.000245176326582497
9	28765494	28828044	2	neutral	AA	100	germline	1	0.379668834805678	0.361046970779417
9	29093256	29098260	1	loss	A	-1	germline	1	0.0185186172561286	0.0428264515942157
9	32325840	32335848	2	neutral	AA	27.2839	somatic	0	0.103822586314419	0.331745426655831
9	35913708	35916210	4	gain	AABB	10.3352	germline	1	0.0832804077607802	0.27006449665052
9	40912704	40915206	7	gain	-	-1	germline	1	0.083270628148261	0.270047511959014
9	40922712	40930218	6	gain	AAAABB	0.891206	germline	1	0.00270034946628079	0.004958182286664
9	42386382	42388884	7	gain	AAAABBB	10.1969	germline	1	0.083270628148261	0.270047511959014
9	69122754	69127758	1	loss	A	-1	somatic	0	0.0178584126579093	0.0452409393283038
9	75873150	75883158	2	neutral	AA	100	somatic	0	0.063287459119512	0.0756324056927097
9	76421088	76628754	2	neutral	AA	27.2788	somatic	0	0.772660473860608	0.29013617465589
9	77839722	77867244	2	neutral	AA	36.3786	somatic	0	0.373471018997312	0.221634634583006
9	86539176	86541678	1	loss	A	-1	somatic	0	0.0834572122411271	0.270371416890119
9	102799674	103012344	2	neutral	AA	26.8913	germline	1	0.00108447289224	0.0055397857772721
9	103012344	103017348	1	loss	A	-1	somatic	0	0.0204286275495713	0.0554517049688458
9	103017348	103722912	2	neutral	AA	12.5891	somatic	0	0.000644809496994908	7.64357341183075e-05
9	110688480	110690982	1	loss	A	-1	germline	1	0.0832932449141355	0.270086790241475
9	112312278	112414860	2	neutral	AA	15.636	somatic	0	0.426985039424608	0.441546677880897
9	123914052	123919056	1	loss	A	-1	germline	1	0.0203121371179513	0.0538038815510773
9	127419354	127424358	1	loss	A	-1	somatic	0	0.0254208756062429	0.0529157106059843
9	128567772	128592792	2	neutral	AA	100	somatic	0	0.113251932105475	0.0113011722462403
9	128647836	128652840	1	loss	A	-1	somatic	0	0.0209494282646073	0.0562228800197583
9	129263328	129265830	1	loss	A	-1	somatic	0	0.0836772645833691	0.270753032029376
9	129423456	129438468	2	neutral	AA	0.272326	germline	1	5.51211986973283e-05	0.000114420050607356
9	129438468	129445974	2	neutral	AA	0.996346	germline	1	0.0777550728565465	0.0640008102609165
9	133836984	133934562	2	neutral	AA	26.0765	somatic	0	0.0987384885513336	0.0385109664701946
9	136161342	136168848	1	loss	A	-1	somatic	0	0.00667675485065533	0.00992802529455239
9	137032038	137044548	2	neutral	AA	27.1739	somatic	0	0.231318317459455	0.266107247240637
9	137102094	137104596	3	gain	AAB	4.83824	somatic	0	0.0832932449141355	0.270086790241468
9	137357298	137362302	1	loss	A	-1	germline	1	0.0206414018556409	0.0561934060075687
9	137715084	137717586	3	gain	AAB	47.9178	somatic	0	0.0832926335847739	0.27008572861144
10	3367692	3607884	2	neutral	AA	21.0513	somatic	0	3.12221958518068e-05	0.00221114791209209
10	6835464	6837966	0	loss	-	-1	somatic	0	0.0832681833904951	0.27004326590798
10	26568738	26573742	2	neutral	AA	100	somatic	0	0.0571241729560535	0.136335595879377
10	26936532	26941536	3	gain	AAB	15.9087	germline	1	0.0143132084416379	0.0366420893866503
10	30299220	30316734	2	neutral	AA	56.0518	somatic	0	0.77594694599666	0.998658927557351
10	38483262	38525796	3	gain	AAB	0.619978	germline	1	1.01630081685627e-12	4.88498130835069e-15
10	38525796	38528298	11	gain	AAAAAAAAAAB	3.34719	germline	1	0.0832687945744856	0.270044327416165
10	38573334	38580840	4	gain	AAAA	3.19606	germline	1	0.00270363703678726	0.00496845123401124
10	38580840	38813526	3	gain	AAB	0.332402	germline	1	8.16879451532597e-11	7.34272642688438e-11
10	38813526	38836044	3	gain	AAB	1.01185	germline	1	2.03846347046927e-07	3.05323062388396e-08
10	39559122	39561624	0	loss	-	-1	somatic	0	0.0832681833904951	0.27004326590798
10	41820930	41843448	2	neutral	AA	3.4096	germline	1	0.000196093140121644	0.000934948013178505
10	41855958	41878476	18	gain	AAAAAAAAAAAABBBBBB	8.69726	somatic	0	0.000107530146335126	9.08115577635815e-05
10	41880978	41898492	45	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2.69908	germline	1	0.0027000332084521	0.00495782853228588
10	42298812	42321330	3	gain	AAA	0.948669	germline	1	2.05307298909718e-07	3.11748692416458e-08
10	46169406	46171908	3	gain	AAB	72.1975	germline	1	0.0833189240295216	0.270131381453203
10	46171908	46332036	3	gain	AAB	0.417759	germline	1	1.32770601649893e-26	0
10	46514682	46542204	5	gain	AAAAB	6.38993	germline	1	2.03624502467114e-07	3.04833315256658e-08
10	46542204	46559718	5	gain	AAABB	0.833605	germline	1	4.59555682330882e-06	1.66395751222126e-06
10	50220144	50237658	2	neutral	AA	100	somatic	0	0.889699096545907	0.985880882278572
10	52974846	52994862	2	neutral	AA	100	somatic	0	0.250904032744871	0.493620613499887
10	57085632	57183210	2	neutral	AA	1.71039	germline	1	0.289308090419817	0.47214498152189
10	57243258	57255768	2	neutral	AA	100	germline	1	0.0292635764203541	0.0727530987709261
10	60563412	60733548	2	neutral	AA	75.4108	germline	1	0.337847533607591	0.478800855963535
10	63140472	63423198	2	neutral	AA	84.3446	somatic	0	0.0213938169916558	0.00743275623149708
10	65547396	65554902	1	loss	A	-1	somatic	0	0.0045741815728741	0.0081804514898639
10	69520572	69530580	1	loss	A	-1	germline	1	0.00139052956070138	0.00157898915795862
10	72475434	72542988	2	neutral	AA	37.8128	somatic	0	0.531585010509493	0.758365856732438
10	72760662	72798192	2	neutral	AA	36.3786	somatic	0	0.594411584618304	0.83109916253507
10	74667186	74727234	2	neutral	AA	54.5791	somatic	0	0.350235329508271	0.532147072613897
10	77341824	77354334	2	neutral	AA	100	somatic	0	0.699494452893152	0.981015349541924
10	91105326	91122840	2	neutral	AA	61.8078	somatic	0	0.850843684542486	0.967075313467883
10	93399660	93562290	2	neutral	AA	65.9288	somatic	0	0.0468657729250319	0.208909845986971
10	94140252	94205304	2	neutral	AA	100	somatic	0	0.673644983308918	0.519942376601354
10	98929080	98936586	1	loss	A	-1	somatic	0	0.00489062152970275	0.00846172593796357
10	111944484	111951990	2	neutral	AA	100	germline	1	0.637674066421492	0.817928803053168
10	128457684	128465190	2	neutral	AA	18.2498	somatic	0	0.488777527881962	0.89284261297282
10	131622714	131625216	0	loss	-	-1	germline	1	0.0832718505489481	0.270049635002816
10	132363306	132365808	4	gain	AAAA	24.4446	germline	1	0.0832779627704302	0.270060250404542
10	133254018	133264026	2	neutral	AA	35.161	germline	1	0.892187934728462	0.798757263401859
11	9302436	9322452	2	neutral	AA	100	somatic	0	0.0860202379015167	0.0613666125415914
11	44270388	44282898	2	neutral	AA	54.5678	somatic	0	0.0480854182120079	0.185348558232674
11	48909096	48939120	2	neutral	AA	1.0907	somatic	0	6.4403123283495e-05	6.55082326628253e-05
11	48939120	48941622	2	neutral	AA	6.16566	somatic	0	0.12974563970953	0.343245057306169
11	54923904	54933912	1	loss	A	-1	germline	1	0.0011678930414977	0.00134217103635537
11	55184112	55214136	1	loss	A	-1	germline	1	4.60117810411598e-05	3.85334384382929e-05
11	58864554	58869558	1	loss	A	-1	somatic	0	0.0274583081682172	0.0542535799189406
11	63425700	63430704	3	gain	AAA	100	germline	1	0.0143267199326932	0.0366763797278883
11	70228638	70238646	1	loss	A	-1	germline	1	0.00132179846391327	0.00156391480945151
11	87264756	87279768	2	neutral	AA	100	somatic	0	0.146727549953511	0.36354137682153
11	96564690	96567192	0	loss	-	-1	germline	1	0.0832816302777608	0.270066619791791
11	102802176	103552776	2	neutral	AA	86.2506	somatic	0	0.00922245166078762	0.0259031356627102
11	131264928	131267430	1	loss	A	-1	germline	1	0.0832969129666317	0.270093160085611
12	758106	765612	1	loss	A	-1	germline	1	0.00426741034903477	0.00736035092962628
12	2254302	2256804	7	gain	AAAABBB	32.3582	germline	1	0.083270628148261	0.270047511959014
12	2537028	2542032	3	gain	AAB	10.1246	germline	1	0.0143208314005258	0.0366650433746547
12	4118292	4125798	2	neutral	AA	100	germline	1	0.0291190564322673	0.0315595088644558
12	6144912	6152418	1	loss	A	-1	germline	1	0.00565960315189356	0.00952743326803041
12	7866288	7923834	2	neutral	AA	22.8887	somatic	0	0.00239628634115923	0.00459861361980629
12	11384100	11391606	1	loss	A	-1	germline	1	0.0050385385288329	0.00884629086054778
12	18094464	18099468	1	loss	A	-1	somatic	0	0.0206955962521006	0.0563506137255828
12	20486376	20556432	2	neutral	AA	36.3815	somatic	0	0.903059382427669	0.497378002436837
12	30084048	30091554	1	loss	A	-1	somatic	0	0.0062119256981321	0.00999539823723017
12	30294216	30306726	2	neutral	AA	100	germline	1	0.699658754916771	0.912765247730784
12	30324240	30329244	1	loss	A	-1	germline	1	0.0195125572973412	0.0526456869094855
12	33224058	33304122	2	neutral	AA	54.5681	somatic	0	0.134314104192069	0.295441675315179
12	34677720	37600056	2	neutral	AA	1.14504	germline	1	2.0144045222563e-07	7.92680759198472e-06
12	37600056	37605060	1	loss	A	-1	somatic	0	0.0272168938259553	0.0550178491590011
12	37605060	37752678	2	neutral	AA	1.40201	germline	1	8.23930019148871e-13	1.18920728819916e-09
12	39083742	39088746	1	loss	A	-1	somatic	0	0.0228870292120405	0.0541552258579625
12	39711744	39714246	0	loss	-	-1	somatic	0	0.0832724617547428	0.270050696529283
12	45313722	45323730	2	neutral	AA	100	somatic	0	0.796041603168168	0.975614905034356
12	45508878	45516384	0	loss	-	-1	germline	1	0.0143084820760384	0.0366362802452613
12	46584738	46634778	2	neutral	AA	62.2302	somatic	0	0.262644178426426	0.752788304143531
12	47630574	47635578	1	loss	A	-1	somatic	0	0.0268961295961758	0.0594777796382856
12	48313620	48318624	1	loss	A	-1	somatic	0	0.0218415761715096	0.0564405559915441
12	57500964	57543498	2	neutral	AA	100	somatic	0	0.894726679585086	0.657275413049696
12	59435010	59542596	2	neutral	AA	2.97587	somatic	0	0.594924249120871	0.87530439401653
12	59542596	59545098	0	loss	-	-1	germline	1	0.0832657386908731	0.270039019905675
12	59552604	59560110	2	neutral	AA	100	germline	1	0.365273531764095	0.469777256513765
12	62257266	62304804	2	neutral	AA	54.5678	somatic	0	0.0574911895175024	0.0888634846064217
12	63398178	63405684	2	neutral	AA	100	somatic	0	0.292811916126098	0.618706822293339
12	64786788	64824318	2	neutral	AA	100	somatic	0	0.894730325519028	0.923501101046091
12	64824318	64844334	2	neutral	AA	54.5678	somatic	0	0.00854673881199265	0.00665664580556469
12	67111146	67128660	2	neutral	AA	54.5719	somatic	0	0.556369495289799	0.814492884170389
12	68284584	68292090	2	neutral	AA	100	somatic	0	0.283163258632528	0.720182711796763
12	81745344	81750348	1	loss	A	-1	somatic	0	0.0248994498562032	0.0559299950002458
12	82323306	82378350	2	neutral	AA	100	somatic	0	0.787272892876326	0.779471054501838
12	85185594	85193100	1	loss	A	100	somatic	0	0.00758187922639602	0.00971867101824542
12	87469920	87492438	2	neutral	AA	17.7414	somatic	0	0.00306815213801499	0.00303485401443615
12	87900264	87942798	2	neutral	AA	54.5873	somatic	0	0.185083841572308	0.227416558092825
12	90092016	90094518	1	loss	A	-1	germline	1	0.0832871317840729	0.270076174078258
12	93449700	93454704	3	gain	AAA	81.4204	somatic	0	0.0144159841150809	0.0369476180964855
12	102479418	102486924	2	neutral	AA	100	somatic	0	0.860779464631595	0.848556843891324
12	106122330	106174872	2	neutral	AA	63.5407	somatic	0	0.787278962624731	0.976569796485546
12	111536658	111544164	1	loss	A	-1	somatic	0	0.00681284362368919	0.00999618017616044
12	112447386	112449888	2	neutral	AA	100	somatic	0	0.158588366903525	0.383165622510733
12	120926664	120929166	0	loss	-	-1	germline	1	0.0832749066142624	0.270054942665608
12	122152644	122160150	2	neutral	AA	100	somatic	0	0.313870345457812	0.743871504212205
12	130644432	130646934	4	gain	AAAB	7.21301	germline	1	0.0832804077607802	0.27006449665052
13	21377088	21379590	4	gain	-	-1	germline	1	0.0832816302777608	0.270066619791785
13	22020102	22022604	0	loss	-	-1	somatic	0	0.0832663498603277	0.270040081401683
13	22022604	22025106	1	loss	A	-1	somatic	0	0.120082078631316	0.329066211322723
13	23060934	23063436	0	loss	-	-1	somatic	0	0.0832663498603277	0.270040081401683
13	57178206	57215736	1	loss	A	-1	germline	1	2.14149399020117e-10	4.67681449123347e-12
13	63027882	63065412	3	gain	-	-1	germline	1	7.38491554074061e-08	3.61220660050066e-08
13	63065412	63067914	5	gain	-	-1	germline	1	0.0832736841772344	0.270052819591347
13	63728442	63775980	1	loss	A	-1	germline	1	1.83005599674136e-05	7.07945765821005e-06
13	67526478	67528980	3	gain	-	-1	somatic	0	0.0832932449141355	0.270086790241468
13	68477238	68497254	1	loss	A	-1	germline	1	3.47730163463247e-06	1.26780332887488e-06
13	71902476	71907480	1	loss	A	-1	germline	1	0.0143512623630208	0.0367613545150763
13	82591020	82598526	1	loss	A	-1	germline	1	0.00671171426096861	0.00900160358446123
13	87672582	87707610	2	neutral	AA	100	somatic	0	0.00773264518535111	0.0175762217781934
13	89136252	89138754	2	neutral	AA	100	somatic	0	0.724787365008448	0.862131561384449
13	89291376	89316396	2	neutral	AA	27.2847	somatic	0	0.533080816345889	0.738325222963204
13	90289674	90294678	2	neutral	AA	100	somatic	0	0.410052158047835	0.441442069694338
13	93512250	93522258	2	neutral	AA	100	somatic	0	0.956283064093207	0.907175417751811
13	95448798	95473818	2	neutral	AA	36.3795	somatic	0	0.741855913820157	0.728542694685714
13	97945794	98025858	2	neutral	AA	100	somatic	0	0.127583259696169	0.0197187135712107
13	98025858	98085906	3	gain	AAB	2.30019	germline	1	1.02018899909553e-16	0
13	98603820	98606322	1	loss	A	-1	somatic	0	0.0855489312646786	0.273982049911744
13	104636142	104646150	2	neutral	AA	54.8425	somatic	0	0.0995871626032268	0.0712398603796429
13	105594408	105599412	2	neutral	AA	100	somatic	0	0.0689125268101438	0.139388850703889
13	105984720	105994728	2	neutral	AA	100	somatic	0	0.467460920248433	0.553885180163981
13	106092306	106094808	2	neutral	AA	100	somatic	0	0.491026212577007	0.713246826695652
13	108294066	108299070	1	loss	A	-1	somatic	0	0.0292715274820072	0.0562376220096712
13	109019646	109024650	1	loss	A	-1	somatic	0	0.0233352605372659	0.0589230857845534
13	109214802	109219806	1	loss	A	-1	somatic	0	0.0266371599196584	0.0558654602346392
13	109772748	109777752	2	neutral	AA	100	somatic	0	0.42925476350176	0.66272440260356
13	110143044	110148048	2	neutral	AA	21.8271	somatic	0	0.757126012726209	0.961794344400528
13	110751030	110756034	2	neutral	AA	100	somatic	0	0.0991211449704653	0.221980570814522
13	113605812	113618322	2	neutral	AA	36.3786	somatic	0	0.0117347501192832	0.0120499579862072
13	114153750	114156252	1	loss	A	-1	somatic	0	0.0835901682811696	0.270602039823162
14	0	16092864	5	gain	AAABB	-1	somatic	0	NA	NA
14	16092864	16095366	10	gain	-	-1	germline	1	0.083270628148261	0.270047511959014
14	16095366	18659916	5	gain	AAABB	-1	somatic	0	NA	NA
14	18659916	18662418	4	gain	AAAB	100	germline	1	0.0832816302777608	0.270066619791785
14	18662418	18684936	5	gain	AAABB	-1	somatic	0	NA	NA
14	18694944	19728270	5	gain	AAABB	-1	somatic	0	NA	NA
14	19728270	19908414	5	gain	AAABB	1.44361	germline	1	1.08900926730314e-20	0
14	19908414	19910916	3	gain	-	-1	germline	1	0.0833189240295216	0.270131381453203
14	19915920	19943442	5	gain	AAAAB	13.4529	germline	1	9.22640551892471e-09	5.58441182185732e-10
14	19948446	19955952	5	gain	AAABB	1.84571	germline	1	0.00270043732168465	0.0049582412479765
14	20236176	20238678	0	loss	-	-1	germline	1	0.0832785740125663	0.270061311961474
14	22740678	22778208	2	neutral	AA	54.5686	somatic	0	0.345226303693319	0.684036515857723
14	32833746	32843754	2	neutral	AA	100	germline	1	0.460555733668701	0.529253594589643
14	37299816	37302318	0	loss	-	-1	somatic	0	0.0832797965077413	0.270063435084463
14	40144590	40149594	1	loss	A	-1	somatic	0	0.0228988182873638	0.0560277571410408
14	41140386	41200434	1	loss	A	-1	germline	1	3.21395441433055e-14	1.11022302462516e-16
14	50970744	51160896	2	neutral	AA	100	somatic	0	0.000509470312515155	0.0017477611081077
14	57028086	57085632	2	neutral	AA	100	somatic	0	0.0282994809606274	0.0462288742431772
14	69550596	69555600	1	loss	A	-1	germline	1	0.0225970329817071	0.053591351677606
14	79638660	79648668	1	loss	A	-1	germline	1	0.00135846432915924	0.00165470274988999
14	82033074	82038078	1	loss	A	-1	somatic	0	0.0261829296845642	0.0571611294040341
14	82728630	82758654	2	neutral	AA	28.6063	germline	1	0.269394099148154	0.725273654842301
14	83489238	83494242	2	neutral	AA	100	somatic	0	0.400988748511681	0.405463799692066
14	84830310	84835314	1	loss	A	-1	somatic	0	0.0189448678595327	0.0496390281797244
14	89148762	89156268	2	neutral	AA	100	somatic	0	0.763761446073816	0.671888193484172
14	89306388	89336412	2	neutral	AA	18.2843	germline	1	0.447896019094943	0.274575758622157
14	91292976	91295478	4	gain	AABB	5.17786	somatic	0	0.0832816302777608	0.270066619791785
14	97910766	98028360	2	neutral	AA	63.8921	somatic	0	0.740552727585247	0.744993033701027
14	98403660	98408664	2	neutral	AA	100	somatic	0	0.595749238373586	0.653423460178696
14	99927378	99929880	6	gain	AAAABB	31.1581	somatic	0	0.083270628148261	0.270047511959014
14	102809682	102932280	2	neutral	AA	69.1847	somatic	0	0.544462351539358	0.503795402726364
15	17081154	17083656	14	gain	-	-1	germline	1	0.0832681833904951	0.270043265907974
15	20338758	20343762	14	gain	-	-1	germline	1	0.0143070355046839	0.0366330855609747
15	20343762	20358774	9	gain	-	-1	germline	1	2.20994681319759e-05	1.22919323327642e-05
15	20378790	20381292	4	gain	-	-1	germline	1	0.0832816302777608	0.270066619791785
15	20388798	20671524	9	gain	-	-1	germline	1	4.24226522028349e-10	1.02263753021248e-11
15	22225266	22250286	5	gain	AAAAB	2.004	germline	1	2.21031957923147e-05	1.22933941273384e-05
15	27306828	27309330	0	loss	-	-1	somatic	0	0.0832816302777608	0.270066619791791
15	51135876	51168402	2	neutral	AA	100	somatic	0	0.0021802954578803	0.00525901613488466
15	56497662	56507670	1	loss	A	-1	somatic	0	0.00127830946275234	0.00154424012455379
15	71296992	71419590	2	neutral	AA	31.0149	somatic	0	0.112384030265433	0.140446660824209
15	72092628	72097632	1	loss	A	-1	somatic	0	0.0207359561949735	0.0563907135863723
15	76591224	76601232	1	loss	A	-1	somatic	0	0.00525493491493893	0.00967758705949706
15	77036580	77041584	1	loss	A	-1	somatic	0	0.0229898148135777	0.0545832228528326
15	98246034	98283564	2	neutral	AA	32.0861	somatic	0	0.060581135681016	0.0130563810588588
15	99026658	99044172	2	neutral	AA	100	somatic	0	0.63276516062445	0.472670970511794
15	101693790	101833902	2	neutral	AA	100	somatic	0	5.58691102363156e-11	1.40214639898772e-09
16	37530	202662	2	neutral	AA	7.39379	somatic	0	4.14720229999929e-06	0.00110497540183752
16	1023318	1025820	4	gain	AABB	11.2209	somatic	0	0.0832804077607802	0.27006449665052
16	3295134	3305142	1	loss	A	-1	germline	1	0.00143163595313135	0.00167583227101009
16	4593672	4658724	2	neutral	AA	100	somatic	0	0.251371069576628	0.114146580606612
16	9162324	9169830	2	neutral	AA	54.5679	somatic	0	0.573658463905298	0.874818857208177
16	21557232	21582252	4	gain	AABB	9.74231	germline	1	4.32717141812907e-08	4.1278666040867e-09
16	22400406	22425426	2	neutral	AA	100	somatic	0	0.673630478808588	0.850052377266493
16	22615578	22693140	4	gain	AAAB	19.8815	germline	1	1.09102777566438e-20	0
16	22693140	22698144	4	gain	AABB	11.6229	germline	1	0.0143109897720252	0.0366400560954976
16	23528808	23543820	2	neutral	AA	36.3786	somatic	0	0.915970991460289	0.92620564554092
16	25095060	25102566	2	neutral	AA	100	somatic	0	0.389952942633435	0.602821849979161
16	30882186	31027302	2	neutral	AA	100	somatic	0	0.221663875892216	0.556653611932293
16	34062228	34064730	29	gain	AAAAAAAAAAAAAAAAAAABBBBBBBBBB	21.2798	germline	1	0.0832675722101387	0.270042204402829
16	34069734	34072236	4	gain	AAAB	21.8418	germline	1	0.0832804077607802	0.27006449665052
16	34084746	34087248	16	gain	AAAAAAAAAAABBBBB	53.1845	germline	1	0.0832675722101387	0.270042204402829
16	34094754	34099758	8	gain	AAAAABBB	2.34306	germline	1	0.0143078069933511	0.0366339568143337
16	34174818	34177320	4	gain	AABB	1.74953	germline	1	0.0832785740125663	0.270061311961467
16	34192332	34957944	2	neutral	AA	0.976471	germline	1	3.49072239125364e-25	0
16	35233164	35523396	3	gain	AAB	6.31115	germline	1	2.3625247103558e-72	0
16	35973756	36088848	2	neutral	AA	60.1917	somatic	0	5.00263140909625e-06	0.000182029772970882
16	36121374	36123876	3	gain	-	-1	germline	1	0.0832834640804889	0.270069804526527
16	36123876	36126378	6	gain	-	-1	germline	1	0.0832712393467875	0.270048573479389
16	49677210	50057514	2	neutral	AA	16.0307	somatic	0	0.825571121407118	0.589293156609543
16	50145084	50370264	2	neutral	AA	27.2839	somatic	0	0.79340879769348	0.454737160589306
16	52647084	52804710	2	neutral	AA	80.0824	somatic	0	0.0489148344898679	0.227695982929959
16	70151076	70163586	4	gain	AAAB	7.24659	germline	1	0.000107581655730086	9.08421599411513e-05
16	72608040	72640566	2	neutral	AA	100	somatic	0	0.756553681164338	0.800241781397799
16	74589624	74599632	1	loss	A	-1	somatic	0	0.0014336471999035	0.00159145560721963
16	75405276	75410280	2	neutral	AA	100	somatic	0	0.164226704027879	0.23199494306723
16	77882256	77894766	2	neutral	AA	100	somatic	0	0.806845894179803	0.993805546617801
16	79693704	79701210	2	neutral	AA	54.5679	somatic	0	0.68031418719894	0.864513632860151
16	81127350	81154872	2	neutral	AA	27.2871	somatic	0	0.692457321108252	0.781397518686753
16	81802890	81807894	2	neutral	AA	54.5728	somatic	0	0.768779539985928	0.961010103530492
16	84612636	84625146	2	neutral	AA	54.5678	somatic	0	0.738032288905804	0.980505933641095
16	86886954	86894460	2	neutral	AA	21.8597	somatic	0	0.105011496375264	0.262162679307651
17	14286420	14288922	1	loss	A	-1	somatic	0	0.0833580664409967	0.270199340298574
17	19595664	19635696	1	loss	A	-1	germline	1	6.48399885803206e-09	1.38090872070507e-10
17	21289518	21304530	4	gain	AABB	0.249547	germline	1	2.21152112137863e-05	1.23039239675604e-05
17	21854970	21857472	6	gain	-	-1	germline	1	0.083270628148261	0.270047511959014
17	21857472	21884994	3	gain	-	-1	germline	1	9.72744940676553e-09	7.99719512833974e-10
17	21967560	21977568	23	gain	-	-1	germline	1	0.0143068426382509	0.0366325047354741
17	21977568	21990078	9	gain	-	-1	germline	1	0.000532142999703678	0.000671042283307388
17	22122684	22155210	5	gain	AAABB	0.739492	germline	1	4.2432214244561e-10	1.02305941496184e-11
17	22157712	22160214	3	gain	AAB	2.81065	germline	1	0.0832914109369544	0.270083605360521
17	26773902	26808930	3	gain	-	-1	somatic	0	4.38211737679591e-08	4.26519619622923e-09
17	26808930	26826444	4	gain	-	-1	germline	1	2.21176979391221e-05	1.23100703652845e-05
17	26826444	26866476	3	gain	-	-1	germline	1	1.98862005119563e-11	1.92623694772465e-13
17	26866476	26868978	8	gain	-	-1	germline	1	0.083270628148261	0.270047511959014
17	26868978	26878986	3	gain	-	-1	germline	1	0.000533274821808974	0.000672661351742709
17	26936532	26939034	16	gain	AAAAAAAAAAABBBBB	100	germline	1	0.0832675722101387	0.270042204402829
17	35538408	35638488	2	neutral	AA	23.4678	germline	1	0.18086046231434	0.0892005872463046
17	54080730	54088236	1	loss	A	-1	germline	1	0.00444251724201715	0.00774064287860654
17	56635272	56640276	2	neutral	AA	100	germline	1	0.994478266440425	0.941368618641388
17	67729140	67744152	2	neutral	AA	100	somatic	0	0.879627397713757	0.967434374525858
17	73558800	73706418	2	neutral	AA	100	somatic	0	0.0195126524801518	0.0165937063828951
17	76618746	76843926	2	neutral	AA	29.8062	somatic	0	0.0167282253182276	0.00726954938599722
17	79633656	79658676	2	neutral	AA	100	somatic	0	0.440933615079796	0.765442332619811
17	80742042	80744544	3	gain	AAB	3.96419	somatic	0	0.0832901883036729	0.270081482121785
17	81810396	81815400	2	neutral	AA	54.5678	somatic	0	0.236832141559019	0.425423949942046
18	5306742	5309244	1	loss	A	-1	germline	1	0.0832950789240278	0.270089975149836
18	5324256	5326758	0	loss	-	-1	germline	1	0.083276129065827	0.270057065752046
18	42473952	42478956	1	loss	A	-1	somatic	0	0.0247467545127941	0.0565124294257592
18	44077734	44080236	1	loss	A	-1	somatic	0	0.115348245883597	0.321946029093157
18	50820624	50825628	2	neutral	AA	100	germline	1	0.591241137197701	0.680418868313944
18	51155892	51203430	2	neutral	AA	27.2842	germline	1	0.503895560620572	0.770345627997989
18	52276788	52286796	2	neutral	AA	100	somatic	0	0.867051252262577	0.950206055202308
18	52349346	52356852	2	neutral	AA	100	somatic	0	0.933878566975092	0.98297895543114
18	53587836	53590338	3	gain	-	-1	somatic	0	0.0833177010691045	0.270129257940327
18	55752066	55797102	2	neutral	AA	100	somatic	0	0.710941663899829	0.472253338763138
18	56912994	57018078	2	neutral	AA	100	somatic	0	0.85033160052881	0.725913090393003
18	57278286	57283290	1	loss	A	-1	germline	1	0.0209054112327704	0.0569168018374122
18	59242356	59252364	2	neutral	AA	54.5678	somatic	0	0.259961497353109	0.219929102180576
18	63738450	63755964	2	neutral	AA	12.0004	germline	1	0.539825222672833	0.79743142924815
18	64544094	64546596	1	loss	A	-1	somatic	0	0.0843939821253064	0.271993059340568
18	66055302	66065310	1	loss	A	-1	germline	1	0.000998210880570482	0.00152743181054027
18	69848334	69853338	2	neutral	AA	54.5678	germline	1	0.658498357998858	0.905093738843862
18	70456320	70466328	2	neutral	AA	100	somatic	0	0.0178440299977257	0.0215838606796886
18	72908280	73028376	2	neutral	AA	55.0003	somatic	0	0.85595770776223	0.935157844043744
18	74614644	74617146	3	gain	AAB	6.38837	somatic	0	0.0832920222590469	0.270084666984457
18	76926492	76969026	2	neutral	AA	6.80362	somatic	0	0.00312409443121623	0.0611024633688932
18	77689602	77704614	2	neutral	AA	98.3795	germline	1	0.0242391663699085	0.0383842485444292
18	78227532	78232536	2	neutral	AA	100	germline	1	0.178929915741363	0.37767553694576
18	79198308	79200810	8	gain	AAAABBBB	36.0088	germline	1	0.083270628148261	0.270047511959014
18	79518564	79523568	1	loss	A	-1	somatic	0	0.0291116975069709	0.0581665480493749
19	985788	993294	2	neutral	AA	100	germline	1	0.0780527562400248	0.0897212441655112
19	4856382	4876398	2	neutral	AA	36.3788	somatic	0	0.162273812633073	0.225513379870069
19	7448454	7450956	12	gain	AAAAAAAABBBB	10.1695	germline	1	0.0832687945744856	0.270044327416165
19	8676936	8701956	2	neutral	AA	45.8878	somatic	0	0.0635791323943029	0.175518986997347
19	8827056	8919630	2	neutral	AA	1.01781	germline	1	0.746310062886888	0.802375662252453
19	8919630	8922132	1	loss	A	-1	germline	1	0.120801001274052	0.330135193876033
19	10335762	10345770	1	loss	A	-1	germline	1	0.000996485537296778	0.00161296743248562
19	12457458	12504996	2	neutral	AA	100	somatic	0	0.0580089375113692	0.0845700541085695
19	14133798	14168826	2	neutral	AA	21.9484	somatic	0	0.602145897684396	0.445749208227897
19	14934438	14939442	1	loss	A	-1	germline	1	0.0146019242524873	0.0375104810472936
19	15167124	15192144	2	neutral	AA	47.4045	somatic	0	0.0662815547563479	0.0873915113765941
19	15279714	15302232	2	neutral	AA	36.3786	somatic	0	0.135472501124191	0.281182343043099
19	15722568	15907716	2	neutral	AA	11.4795	somatic	0	0.213057213460985	0.46800633899181
19	16780914	16903512	2	neutral	AA	79.7722	somatic	0	0.952346105422954	0.99077249741468
19	20413818	20533914	1	loss	A	-1	germline	1	1.37140026583899e-26	0
19	20533914	20536416	1	loss	A	72.5282	germline	1	0.125335194783028	0.336828905742733
19	21562236	21564738	2	neutral	AA	1.31599	germline	1	0.111299072362623	0.315770069306274
19	21564738	21574746	3	gain	AAB	2.49725	somatic	0	0.00271036419157535	0.00498430591637444
19	21574746	21587256	2	neutral	AA	0.852954	germline	1	0.0611821153803105	0.0978762118786827
19	22410414	22425426	2	neutral	AA	3.22202	germline	1	0.734867785538141	0.731444057520011
19	23298624	23311134	2	neutral	AA	13.642	somatic	0	0.0577870173515218	0.0632700284250016
19	23661414	23671422	2	neutral	AA	13.642	somatic	0	0.0358162803214594	0.0671012327892629
19	24329448	24366978	4	gain	AABB	0.696561	germline	1	1.97489032585583e-11	1.87516668859189e-13
19	24366978	24369480	5	gain	AAAAB	47.7429	germline	1	0.0832736841772344	0.270052819591347
19	24369480	24404508	5	gain	AAABB	1.50677	germline	1	1.97524149572952e-09	7.55709939070925e-11
19	27244278	27336852	2	neutral	AA	1.44945	somatic	0	6.12457674665005e-09	2.80091004078997e-06
19	27336852	27346860	3	gain	AAB	0.917486	germline	1	0.000700551824730027	0.00131601290347205
19	27346860	27379386	6	gain	AAAABB	0.148887	somatic	0	9.22352795245517e-09	5.58295187857993e-10
19	27379386	27381888	3	gain	AAB	4.50393	germline	1	0.083287743080724	0.270077235680866
19	27381888	27399402	6	gain	AAAABB	0.211978	germline	1	4.59532864161999e-06	1.66395751222126e-06
19	27399402	27406908	4	gain	AAAB	23.7036	germline	1	0.00270140390352574	0.00496060022757272
19	27469458	27471960	1	loss	A	-1	somatic	0	0.0833568430152195	0.270197216395796
19	38690928	38698434	2	neutral	AA	100	somatic	0	0.573350738577291	0.7930158409989
19	42346350	42361362	2	neutral	AA	54.5678	somatic	0	0.66669086070325	0.801244918391238
19	46276992	46309518	2	neutral	AA	21.8383	somatic	0	0.0619357479575869	0.044093068273805
19	49592142	49617162	2	neutral	AA	36.3787	somatic	0	0.45958303490317	0.415364722787877
19	51263478	51348546	2	neutral	AA	14.621	somatic	0	0.76228970567328	0.930322991591393
19	51493662	51611256	2	neutral	AA	100	somatic	0	0.0348487965806587	0.105325231324966
19	53017380	53047404	3	gain	AAB	4.88449	germline	1	9.26344016804156e-09	5.61492963235821e-10
19	56114856	56122362	2	neutral	AA	18.1915	somatic	0	0.370482827513274	0.718997530367832
20	60048	67554	7	gain	-	-1	germline	1	0.0143078069933511	0.0366339568143337
20	1408626	1411128	1	loss	A	-1	somatic	0	0.0835019202573061	0.270448983706999
20	1581264	1613790	1	loss	A	-1	germline	1	4.4507125418313e-07	3.29825426970132e-08
20	6002298	6004800	2	neutral	AA	100	somatic	0	0.406902771658231	0.645027096156034
20	9089766	9117288	2	neutral	AA	54.5678	somatic	0	0.594234927666598	0.476236699940134
20	10095570	10098072	2	neutral	AA	100	somatic	0	0.555044642901811	0.75984240698914
20	13898610	13901112	2	neutral	AA	100	somatic	0	0.25285540866249	0.496072900811201
20	15319746	15324750	1	loss	A	-1	somatic	0	0.0212478087065281	0.0565238518552347
20	18179532	18267102	2	neutral	AA	31.4412	somatic	0	0.16919123684567	0.235100211494609
20	20776608	20791620	2	neutral	AA	57.2224	somatic	0	0.977694779088556	0.997295604550513
20	21304530	21309534	1	loss	A	-1	somatic	0	0.01799875915401	0.0479313810999549
20	21309534	21329550	2	neutral	AA	100	somatic	0	0.00285343983225696	0.00753676742122378
20	21562236	21577248	2	neutral	AA	100	somatic	0	0.45121878422447	0.447635345545966
20	23070942	23073444	2	neutral	AA	100	somatic	0	0.895750960227113	0.934570198596481
20	26205948	26210952	2	neutral	AA	10.8025	somatic	0	0.151632295306507	0.370844058722417
20	26281008	26323542	2	neutral	AA	6.6366	somatic	0	0.33077179675723	0.470633701514376
20	26328546	26381088	2	neutral	AA	5.47155	somatic	0	3.16125510171954e-07	3.55742403312931e-06
20	28557828	28560330	6	gain	-	-1	germline	1	0.083270628148261	0.270047511959014
20	28780506	28788012	7	gain	-	-1	germline	1	0.0143078069933511	0.0366339568143337
20	28803024	28823040	9	gain	-	-1	germline	1	9.63877745032507e-07	2.25177433366142e-07
20	28835550	28838052	4	gain	-	-1	somatic	0	0.0832816302777608	0.270066619791785
20	28870578	28873080	7	gain	-	-1	germline	1	0.083270628148261	0.270047511959014
20	28943136	28945638	4	gain	-	-1	somatic	0	0.0832816302777608	0.270066619791785
20	28953144	28955646	5	gain	-	-1	somatic	0	0.0832718505489481	0.27004963500281
20	29263392	29265894	8	gain	-	-1	germline	1	0.083270628148261	0.270047511959014
20	29265894	29270898	4	gain	-	-1	germline	1	0.0143108933150112	0.0366386038051142
20	29275902	29280906	4	gain	-	-1	germline	1	0.0143113756058163	0.0366403465596182
20	29283408	29375982	3	gain	-	-1	germline	1	2.12759099459483e-11	3.7381209239129e-13
20	29408508	29411010	5	gain	-	-1	germline	1	0.0832718505489481	0.27004963500281
20	29876382	29878884	8	gain	-	-1	germline	1	0.083270628148261	0.270047511959014
20	29888892	29891394	3	gain	-	-1	germline	1	0.0832901883036729	0.270081482121785
20	29891394	29893896	7	gain	-	-1	germline	1	0.083270628148261	0.270047511959014
20	30151602	30154104	4	gain	-	-1	somatic	0	0.0832804077607802	0.27006449665052
20	30812130	30814632	8	gain	-	-1	germline	1	0.083270628148261	0.270047511959014
20	30939732	30942234	6	gain	-	-1	germline	1	0.083270628148261	0.270047511959014
20	30977262	30997278	3	gain	-	-1	somatic	0	0.000559263291830415	0.000756920429155428
20	31067334	31074840	50	gain	-	-1	germline	1	0.0143066497741114	0.0366325047354741
20	31164912	31167414	6	gain	-	-1	germline	1	0.083270628148261	0.270047511959014
20	31167414	31169916	3	gain	-	-1	germline	1	0.0833018039068349	0.270101653381696
20	31182426	31184928	5	gain	-	-1	germline	1	0.0832730729641715	0.270051758058789
20	31184928	31187430	35	gain	-	-1	germline	1	0.0832675722101387	0.270042204402829
20	31187430	31189932	5	gain	-	-1	germline	1	0.0832724617547428	0.270050696529276
20	31189932	31192434	3	gain	-	-1	germline	1	0.0834780327401492	0.270407541880867
20	31224960	31232466	4	gain	AAAA	4.79976	germline	1	0.00270226530635141	0.0049627831996012
20	31232466	31239972	3	gain	AAB	3.41555	germline	1	0.00271832614638003	0.00498270651821453
20	31239972	31242474	62	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBBBBBBB	100	germline	1	0.0832663498603277	0.270040081401676
20	31242474	31244976	3	gain	AAA	22.2069	germline	1	0.083287743080724	0.270077235680866
20	31244976	31247478	2	neutral	AA	45.8972	somatic	0	0.200088292058151	0.435652373292697
20	31910508	31920516	2	neutral	AA	27.284	somatic	0	0.447355012885542	0.454151368138827
20	33516792	33519294	2	neutral	AA	100	somatic	0	0.961400213201437	0.954309104454449
20	34384986	34389990	2	neutral	AA	27.3873	somatic	0	0.540016641929849	0.785140305649228
20	35513388	35528400	2	neutral	AA	36.3786	somatic	0	0.437093479544403	0.479233594310133
20	35603460	35618472	2	neutral	AA	54.5678	somatic	0	0.565692240950966	0.550260263528849
20	37217250	37229760	2	neutral	AA	100	somatic	0	0.132456431582738	0.0599279568354483
20	37590048	37605060	2	neutral	AA	24.9217	somatic	0	0.678853169431895	0.808473712086743
20	38168010	38178018	2	neutral	AA	100	somatic	0	0.6096399869349	0.539125113530054
20	38463246	38465748	1	loss	A	-1	somatic	0	0.0942404161229994	0.28860607630472
20	40062024	40082040	2	neutral	AA	100	somatic	0	0.408276320874988	0.738734065492624
20	43845048	43852554	2	neutral	AA	100	somatic	0	0.566809296661207	0.584345608976174
20	44132778	44135280	1	loss	A	-1	somatic	0	0.0844125196866579	0.272025073406277
20	44675712	44680716	1	loss	A	-1	germline	1	0.0174346168739179	0.0461901825434229
20	46787400	46789902	4	gain	AAAB	8.25964	somatic	0	0.0832816302777608	0.270066619791785
20	48386178	48426210	2	neutral	AA	37.6903	somatic	0	0.139890115125301	0.374792955939533
20	49209336	49211838	2	neutral	AA	100	somatic	0	0.471805706264207	0.698416481070321
20	49939920	49964940	2	neutral	AA	27.284	somatic	0	0.968273792067122	0.36236263402662
20	51936516	51961536	2	neutral	AA	80.0901	somatic	0	0.774716275113588	0.787766265426673
20	52707132	52744662	2	neutral	AA	40.0524	somatic	0	0.803212338464561	0.48623483549508
20	53885574	53893080	2	neutral	AA	54.5792	somatic	0	0.843918814354808	0.450172571151313
20	55624464	55629468	1	loss	A	-1	somatic	0	0.0271391352407831	0.0542094852340645
20	55631970	55646982	2	neutral	AA	54.5678	somatic	0	0.216329422924547	0.234210262596312
20	57030588	57058110	2	neutral	AA	27.2874	germline	1	0.111019233263321	0.173711759392496
20	57115656	57220740	2	neutral	AA	100	somatic	0	0.308156727997392	0.251497926453259
20	59785290	59792796	2	neutral	AA	100	somatic	0	0.300773746848201	0.534186557118617
20	62497458	62499960	1	loss	A	-1	somatic	0	0.0981562248512367	0.29501098246426
20	63693414	63695916	3	gain	AAA	8.21307	somatic	0	0.0833060836703382	0.27010908517569
21	0	8989686	6	gain	AAAABB	-1	somatic	0	2.20996061827988e-05	1.22922246783563e-05
21	8989686	8997192	9	gain	AAAAAABBB	0.857035	germline	1	0.00270033189551344	0.00495812332599421
21	8997192	10651014	6	gain	AAAABB	-1	somatic	0	0.000532221101582944	0.000671138047353859
21	10651014	10691046	6	gain	AAAABB	1.47681	germline	1	1.97280474531485e-11	1.87405646556726e-13
21	10691046	10693548	55	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBB	100	germline	1	0.0832669610334162	0.27004114290073
21	10693548	10766106	6	gain	AAAABB	1.08184	germline	1	9.50217077325302e-15	0
21	17744184	17761698	2	neutral	AA	100	somatic	0	0.321398609191318	0.567487507577348
21	20141100	20186136	2	neutral	AA	20.3975	somatic	0	0.017663525878657	0.013356463234128
21	20586456	20588958	1	loss	A	-1	germline	1	0.0832840753553336	0.270070866110872
21	21241980	21246984	2	neutral	AA	100	somatic	0	0.908172419942394	0.998278220136916
21	21302028	21387096	2	neutral	AA	61.1576	somatic	0	0.339358693027845	0.338058035855274
21	25900704	25918218	2	neutral	AA	53.8538	somatic	0	0.436656439545188	0.802164977657173
21	29646198	29698740	2	neutral	AA	100	somatic	0	0.000788747368597265	9.62595915313669e-05
21	33664410	33686928	2	neutral	AA	54.5678	germline	1	0.125618281354894	0.32032671658153
21	36068832	36073836	2	neutral	AA	100	somatic	0	0.731598202423948	0.931946255947157
21	36136386	36151398	2	neutral	AA	47.4045	somatic	0	0.577210222443932	0.746258411976229
21	36218952	36221454	2	neutral	AA	100	somatic	0	0.740602718273075	0.870147479078003
21	36486666	36499176	2	neutral	AA	28.6339	somatic	0	0.539759578758556	0.536629636362064
21	36646794	36649296	2	neutral	AA	100	germline	1	0.197680491647124	0.432724545076189
21	37677618	37835244	2	neutral	AA	8.77648	somatic	0	0.0424245271489877	0.197272991775372
21	38428218	38445732	2	neutral	AA	93.0928	somatic	0	0.921349177835966	0.953771622849027
21	38755980	38758482	2	neutral	AA	100	somatic	0	0.713083290609415	0.856083268947312
21	38823534	38828538	2	neutral	AA	100	somatic	0	0.841750413284675	0.782066951307291
21	39744270	39774294	2	neutral	AA	27.4995	somatic	0	0.416174286590757	0.541280401730137
21	40342248	40349754	2	neutral	AA	100	somatic	0	0.0956503877937677	0.262818797552739
21	41473152	41475654	1	loss	A	-1	somatic	0	0.085698338308542	0.274238527017779
21	41675814	41678316	2	neutral	AA	100	germline	1	0.518089192149817	0.73347824707122
21	41805918	41808420	4	gain	AAAA	5.82219	germline	1	0.0832804077607802	0.27006449665052
21	43279596	43282098	1	loss	A	-1	somatic	0	0.0954472438572719	0.290590008574906
21	43334640	43339644	3	gain	AAA	14.9237	somatic	0	0.017386366432661	0.0460163190018021
21	43840044	43932618	2	neutral	AA	91.7132	somatic	0	0.507753727932474	0.794425118637398
21	44260380	44262882	1	loss	A	-1	somatic	0	0.12267190303795	0.332909547494558
21	45553914	45556416	1	loss	A	-1	somatic	0	0.0993955431190185	0.297012437546573
21	46236960	46239462	1	loss	A	-1	somatic	0	0.11036289071562	0.314319049500296
21	46484658	46487160	2	neutral	AA	100	somatic	0	0.0954424684155451	0.290590008574899
22	11211462	11213964	7	gain	-	-1	somatic	0	0.083270628148261	0.270047511959014
22	11619288	11629296	4	gain	AABB	14.7894	germline	1	0.0143110862296127	0.0366391847152236
22	16558236	16568244	2	neutral	AA	11.1087	somatic	0	0.00389917796360866	0.0116550935194081
22	17288820	17293824	1	loss	A	-1	somatic	0	0.0220941147946996	0.0562346733458412
22	28064934	28205046	2	neutral	AA	36.5389	somatic	0	0.0719509567866294	0.110900712480645
22	29118276	29120778	3	gain	AAB	29.5919	germline	1	0.0832993584076556	0.270097406709283
22	29426022	29548620	2	neutral	AA	41.5968	somatic	0	0.745026998804303	0.316444364340094
22	30204144	30209148	2	neutral	AA	100	somatic	0	0.504805342826874	0.547554231670657
22	31380084	31385088	1	loss	A	-1	somatic	0	0.0246926949044356	0.0528797451276107
22	33359166	33364170	1	loss	A	-1	germline	1	0.0167098377862634	0.0428594112632358
22	33384186	33386688	1	loss	A	-1	somatic	0	0.0844737170173003	0.272130739294272
22	34467552	34470054	0	loss	-	-1	germline	1	0.0832724617547428	0.270050696529283
22	36746874	36751878	1	loss	A	-1	germline	1	0.0155637957105907	0.0401146363055406
22	41570730	42008580	2	neutral	AA	15.4321	germline	1	0.0476680849015323	0.109116451695907
22	42921810	42939324	2	neutral	AA	54.5678	somatic	0	0.101527474963636	0.10854170858273
22	45301212	45306216	2	neutral	AA	100	somatic	0	0.0497002557316575	0.0891545681056463
22	49224348	49229352	2	neutral	AA	54.5679	somatic	0	0.69405418751042	0.556052141841907
22	50380272	50407794	2	neutral	AA	15.1225	somatic	0	0.878348043655708	0.734730177422865
X	3522816	3525318	2	gain	-	-1	somatic	0	0.679287572102439	0.837687603469492
X	62507466	62514972	2	gain	AA	11.7451	somatic	0	0.168147621461158	0.428293547898692
X	108771948	108776952	0	loss	-	-1	somatic	0	0.0143108933150112	0.0366417989104432
X	115399746	115404750	0	loss	-	-1	somatic	0	0.0143234375366042	0.0366813221748133
X	119738214	119743218	0	loss	-	-1	somatic	0	0.0143113756058163	0.0366452847579238
X	126776340	126781344	0	loss	-	-1	somatic	0	0.0143223757269645	0.0366781240543881
X	145338678	145343682	0	loss	-	-1	somatic	0	0.0143112791465082	0.0366441227765267
Y	10113084	10130598	2	gain	AA	23.7066	somatic	0	0.249896841825393	0.0348819929332502
Y	10656018	10658520	10	gain	-	-1	germline	1	0.0832700169533685	0.270046450441686
Y	10661022	10688544	3	gain	-	-1	germline	1	0.0005412399055498	0.000695089206583899
Y	10748592	10753596	2	gain	-	-1	germline	1	0.326151642230216	0.700402059659621
Y	10753596	10756098	5	gain	-	-1	germline	1	0.0832730729641715	0.270051758058789
Y	10756098	10758600	2	gain	-	-1	germline	1	0.125510017493749	0.337088067898914
Y	10758600	10763604	6	gain	-	-1	germline	1	0.0143081927514462	0.036635118513681
Y	10763604	10796130	3	gain	-	-1	germline	1	1.54493972517359e-06	8.96991496635025e-08
Y	10796130	10803636	4	gain	-	-1	germline	1	0.00270085906398164	0.00495918471639034
Y	10803636	10806138	2	gain	-	-1	germline	1	0.913279804983024	0.940246129977445
Y	10806138	10808640	4	gain	-	-1	germline	1	0.0832804077607802	0.27006449665052
Y	10811142	10821150	2	gain	-	-1	germline	1	0.0123389984876451	0.0189704842877153
Y	10821150	10826154	3	gain	-	-1	germline	1	0.0143120508370306	0.0366403465596182
Y	10826154	10843668	2	gain	-	-1	germline	1	0.0651514398184772	0.0644949568429511
Y	10843668	10846170	4	gain	-	-1	germline	1	0.0832804077607802	0.27006449665052
Y	10846170	10883700	2	gain	-	-1	germline	1	0.500539683453245	0.0805914436859906
Y	10883700	10896210	3	gain	-	-1	germline	1	0.00270381294567128	0.00496319629335273
Y	10923732	10928736	4	gain	-	-1	germline	1	0.0143105074926901	0.0366380229030632
Y	10928736	10933740	2	gain	-	-1	germline	1	0.08557466450566	0.134264830316524
Y	10933740	10936242	6	gain	-	-1	germline	1	0.0832712393467875	0.270048573479389
Y	10936242	10986282	2	gain	-	-1	germline	1	0.00186432978567208	0.000185647965657121
Y	10986282	10988784	16	gain	-	-1	germline	1	0.0832675722101387	0.270042204402829
Y	10988784	10998792	2	gain	-	-1	germline	1	0.0044537979600447	0.0365055513021809
Y	10998792	11001294	8	gain	-	-1	germline	1	0.083270628148261	0.270047511959014
Y	11003796	11011302	2	gain	-	-1	germline	1	0.403290164954762	0.221937339311564
Y	11013804	11016306	19	gain	-	-1	germline	1	0.0832675722101387	0.270042204402829
Y	11016306	11041326	2	gain	AA	25.1633	germline	1	0.613778821368341	0.53270159899319
Y	11291526	11306538	32	gain	AAAAAAAAAAAAAAAAAAAAABBBBBBBBBBB	5.30801	germline	1	2.20953269889472e-05	1.22904707047233e-05
Y	11306538	11309040	5	gain	AAABB	1.78393	germline	1	0.0832749066142624	0.270054942665602
Y	11314044	11334060	8	gain	AAAAABBB	2.32334	germline	1	0.000532129417858391	0.000671042283307388
Y	11529216	11534220	20	gain	AAAAAAAAAAAAAAAAAABB	48.9504	germline	1	0.0143073248086336	0.0366339568143337
Y	11686842	11689344	4	gain	AAAA	7.6404	germline	1	0.0832785740125663	0.270061311961467
Y	11689344	11691846	8	gain	AAAAAAAB	57.9904	germline	1	0.083270628148261	0.270047511959014
Y	11716866	11719368	4	gain	AAAA	15.5651	germline	1	0.0832816302777608	0.270066619791785
Y	11719368	11721870	2	gain	AA	13.6434	germline	1	0.125975299846121	0.337765744032279
Y	11721870	11724372	43	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBB	100	germline	1	0.0832675722101387	0.270042204402829
Y	11729376	11746890	3	gain	AAB	1.65429	germline	1	0.0391913164618147	0.00560640254238487
Y	11746890	11749392	11	gain	AAAAAAABBBB	4.08745	germline	1	0.0832687945744856	0.270044327416165
Y	26636292	26641296	4	gain	AABB	7.47856	germline	1	0.0143096394260158	0.0366383133530814
Y	26641296	26656308	2	gain	AA	18.1103	germline	1	0.506210549938224	0.468564909361567
Y	56825424	56830428	18	gain	AAAAAAAAAAAABBBBBB	6.66732	germline	1	0.0143069390711807	0.0366327951472172
Y	56830428	56835432	42	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBB	17.6464	germline	1	0.0143068426382509	0.0366325047354741
Y	56835432	56850444	9	gain	AAAAAABBB	2.01585	germline	1	0.000532129417858391	0.000671042283307388
