chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	1451740	1494291	1	loss	A	-1	somatic	0	2.23501874645566e-05	1.24658847947545e-05
1	5669295	5674301	4	gain	-	-1	somatic	0	0.0143129546118934	0.036642729064878
1	16604902	16637441	7	gain	-	-1	germline	1	0.000532345076742537	0.00067124608042024
1	31430171	31432674	5	gain	-	-1	somatic	0	0.0832847885463254	0.270072102057898
1	72301658	72349215	1	loss	A	-1	germline	1	4.55299108475565e-14	1.11022302462516e-16
1	103561625	103594164	3	gain	-	-1	germline	1	9.27541778440496e-09	5.62422330929735e-10
1	109643915	109648921	0	loss	-	-1	somatic	0	0.0143085921557818	0.0366368904789374
1	124942251	124974790	3	gain	-	-1	somatic	0	4.34733311558425e-08	4.14750933597219e-09
1	125079916	125082419	11	gain	-	-1	germline	1	0.0832663590950755	0.270040094812796
1	125082419	125084922	5	gain	-	-1	germline	1	0.0832847885463254	0.270072102057898
1	125084922	125162515	3	gain	-	-1	germline	1	0.00932762331788366	0.00996559663722774
1	125162515	125165018	5	gain	-	-1	germline	1	0.0832847885463254	0.270072102057898
1	152350101	152477754	2	neutral	AA	12.1262	germline	1	0.214047406890342	0.243707397571443
1	152582880	152612916	1	loss	A	-1	somatic	0	2.003825644443e-09	7.704470394998e-11
1	157158364	157240963	2	neutral	AA	18.1926	germline	1	0.536203055773439	0.397534855628931
1	163538511	163586068	2	neutral	AA	36.3786	somatic	0	0.00715265461917009	0.0138601249679631
1	169257866	169272884	1	loss	A	-1	somatic	0	2.22786310739881e-05	1.2386317895241e-05
1	169383016	169460609	2	neutral	AA	96.2778	somatic	0	0.327555646090043	0.264220261257506
1	172001154	172198891	2	neutral	AA	23.395	somatic	0	0.0945583735041832	0.235392823929539
1	174937173	174974718	2	neutral	AA	100	somatic	0	1.12892732918717e-05	0.0001005387214561
1	219633244	219798442	2	neutral	AA	40.5484	somatic	0	0.014196158463052	0.0329737507317523
1	221658171	222376532	2	neutral	AA	16.7298	somatic	0	0.000272783495874956	0.000182598751058305
1	234776394	234781400	5	gain	AAABB	2.58736	germline	1	0.0143122759305605	0.036640685467202
1	236095475	236097978	7	gain	AAAAABB	7.85717	somatic	0	0.0832817167416776	0.270066767324748
1	236793812	236798818	2	neutral	AA	100	somatic	0	0.919140014908223	0.900962495334137
2	317881	395474	2	neutral	AA	14.7739	somatic	0	1.39205089053623e-06	2.86913608910089e-05
2	3178810	3181313	8	gain	AAAAAAAA	12.4684	germline	1	0.0832749590945093	0.270055031182577
2	3286439	3339002	2	neutral	AA	8.24932	somatic	0	0.317695338527861	0.375499633781026
2	5021018	5023521	4	gain	AABB	21.773	somatic	0	0.0832854029182685	0.270073169013758
2	9386250	9408777	2	neutral	AA	36.3314	somatic	0	0.81671478616853	0.866232200161518
2	9776718	9781724	2	neutral	AA	100	somatic	0	0.399543292290712	0.667349372836862
2	10782924	10840493	2	neutral	AA	45.1851	somatic	0	0.491181321803426	0.593559869585614
2	15388444	15393450	2	neutral	AA	100	somatic	0	0.806632048864	0.722540743275046
2	52522952	52557994	1	loss	A	-1	germline	1	2.01108723761633e-09	7.74841302231266e-11
2	89772598	89782610	6	gain	-	-1	germline	1	0.000532454330994046	0.000671288867906905
2	89782610	89822658	4	gain	-	-1	germline	1	9.16053789315511e-11	1.3882228699913e-12
2	89825161	89842682	23	gain	-	-1	germline	1	4.59382217311566e-06	1.66414768454359e-06
2	89842682	89850191	5	gain	-	-1	germline	1	0.00270155335976031	0.004959489568367
2	90065449	90210623	3	gain	-	-1	somatic	0	9.19857315674261e-11	1.39499523044151e-12
2	91412063	91414566	6	gain	-	-1	somatic	0	0.0832847885463254	0.270072102057898
2	132243502	132246005	4	gain	-	-1	somatic	0	0.0832854029182685	0.270073169013758
2	135116946	135119449	5	gain	-	-1	somatic	0	0.0832847885463254	0.270072102057898
2	146105116	146120134	1	loss	A	-1	somatic	0	2.24668804941333e-05	1.28429008559028e-05
2	239699795	239739843	2	neutral	AA	12.3071	somatic	0	0.146059065463918	0.0388705011831522
2	241572039	241657141	2	neutral	AA	2.96335	somatic	0	0.202978536367913	0.354790826572749
2	241742243	241782291	2	neutral	AA	12.7721	germline	1	0.192908130823275	0.102077698469803
3	1521824	1734579	2	neutral	AA	100	somatic	0	0.0172339920414118	0.0130641096467105
3	6275021	6295045	3	gain	AAB	57.3419	germline	1	9.69201555423846e-07	2.27688922938007e-07
3	46756040	46808603	1	loss	A	-1	germline	1	2.00801947778036e-09	7.71663843934789e-11
3	55909511	56500219	2	neutral	AA	73.7961	somatic	0	0.000517029166314164	0.0043366095873798
3	70584600	70609630	2	neutral	AA	54.5678	somatic	0	0.0952206402598132	0.0608224053614608
3	87539922	87569958	2	neutral	AA	36.3915	somatic	0	0.410138298858844	0.578685551244946
3	90135533	90556037	2	neutral	AA	1.15057	somatic	0	0.161506994955308	0.179558533929913
3	90556037	90561043	2	neutral	AA	-1	germline	1	NA	NA
3	90561043	90563546	5	gain	-	-1	germline	1	0.0832847885463254	0.270072102057898
3	90563546	90571055	2	neutral	AA	-1	germline	1	NA	NA
3	90571055	93797422	2	neutral	AA	20.4908	germline	1	2.97637958040001e-07	4.0144109441087e-06
3	99178872	99183878	1	loss	A	-1	somatic	0	0.0143194519981811	0.0366672600165799
3	128684236	128696751	3	gain	AAB	17.8389	somatic	0	0.000107966591987187	9.11323355035076e-05
3	149469148	149484166	1	loss	A	-1	somatic	0	2.2842632221875e-05	1.34616370808249e-05
3	152545335	153040929	2	neutral	AA	12.5381	somatic	0	0.516279029009417	0.602488012590248
3	162412161	162424676	1	loss	A	-1	somatic	0	0.000108370304817808	9.14778070787436e-05
3	162795120	162907755	1	loss	A	-1	germline	1	7.27315104931483e-30	0
3	166131619	166174170	2	neutral	AA	36.3786	germline	1	0.0223190049322633	0.0522227638356438
4	10209737	10232264	1	loss	A	-1	germline	1	2.07444847439651e-07	3.10124919078447e-08
4	10389953	10399965	1	loss	A	-1	germline	1	0.000540334232700758	0.000683653344126123
4	40293294	40295797	5	gain	-	-1	germline	1	0.0832847885463254	0.270072102057898
4	49146405	49156417	51	gain	-	-1	somatic	0	0.00269985783232908	0.00495759315579081
4	49652011	49657017	12	gain	-	-1	somatic	0	0.0143066536629171	0.0366330958345743
4	61073200	61078206	1	loss	A	-1	somatic	0	0.0151326815012724	0.0391312494797883
4	63200750	63203253	0	loss	-	-1	somatic	0	0.0832725018783963	0.270050763586827
4	63829003	63851530	1	loss	A	-1	germline	1	4.68164832698009e-06	1.70324175552405e-06
4	68517122	68622248	1	loss	A	-1	germline	1	5.17979561567671e-20	0
4	70619642	70624648	1	loss	A	-1	somatic	0	0.0143515892175856	0.0367649419560803
4	107140915	107155933	1	loss	A	-1	germline	1	2.27012255352948e-05	1.30952925703198e-05
4	118204175	118209181	1	loss	A	-1	somatic	0	0.01435956052974	0.0367151951928809
4	161273296	161283308	1	loss	A	-1	somatic	0	0.000534791214357689	0.000674000377847039
4	165080359	165085365	1	loss	A	-1	somatic	0	0.0143388626587394	0.0367189972765728
4	171452997	171455500	0	loss	-	-1	somatic	0	0.083265130582461	0.270037961094921
4	185519857	185524863	1	loss	A	-1	somatic	0	0.0147590535143635	0.0379929518009443
4	189269351	189279363	0	loss	-	-1	germline	1	0.00270505345832894	0.00497504147478534
5	633259	653283	2	neutral	AA	9.929	somatic	0	0.107471431485765	0.202501301645581
5	3273924	3328990	2	neutral	AA	5.61467	germline	1	3.63092959932935e-05	0.000389982091876573
5	11811657	11889250	2	neutral	AA	34.5578	somatic	0	0.158925308077293	0.139367694346976
5	12550042	12572569	2	neutral	AA	54.5678	somatic	0	0.854337083669058	0.815222308666201
5	13816560	14046836	2	neutral	AA	7.91567	germline	1	0.0013371600831111	0.0165812633950464
5	21813645	21883729	2	neutral	AA	100	somatic	0	0.571150343391679	0.894496905218146
5	26376614	26389129	2	neutral	AA	100	somatic	0	0.132323459755736	0.417980082600675
5	30626708	30656744	2	neutral	AA	27.284	somatic	0	0.0704074837397186	0.275243195098281
5	45371881	45376887	0	loss	-	-1	germline	1	0.0143130515686869	0.0366523645114935
5	46323021	46433153	2	neutral	AA	3.19243	somatic	0	0.483328812773026	0.691111231993002
5	46433153	50152611	2	neutral	AA	-1	somatic	0	0.0143060721602345	0.036631344576239
5	50152611	50250228	2	neutral	AA	4.68001	somatic	0	0.810797155927156	0.943360102724144
5	50948565	51033667	2	neutral	AA	36.3786	somatic	0	0.000187641270529891	0.000975283862982179
5	62194544	62267131	2	neutral	AA	27.3806	somatic	0	0.393868677756801	0.40532944702057
5	82266101	82268604	2	neutral	AA	100	somatic	0	0.272717181686299	0.517389620334759
5	84663975	84681496	2	neutral	AA	35.3745	somatic	0	0.25673738108177	0.521230373874074
5	85199617	85274707	2	neutral	AA	100	somatic	0	0.212879953116675	0.367599251886226
5	85840385	85855403	2	neutral	AA	100	somatic	0	0.0620527730445017	0.121398514429171
5	91204314	91206817	0	loss	-	-1	somatic	0	0.0832768020451391	0.270058231911711
5	99008668	99011171	0	loss	-	-1	somatic	0	0.0832811023917615	0.270065700387357
5	104117291	104197387	2	neutral	AA	56.5221	somatic	0	0.49131763528929	0.847453374734661
5	111458590	111468602	2	neutral	AA	100	somatic	0	0.204053115161888	0.188578397879078
5	121913621	121936148	2	neutral	AA	100	somatic	0	0.730168765656912	0.768006942767968
5	121976196	122271550	2	neutral	AA	100	somatic	0	0.00691016532479611	0.0613057106488054
5	133172115	133189636	2	neutral	AA	100	somatic	0	0.0798321276268245	0.096827435245332
5	145739678	145742181	0	loss	-	-1	somatic	0	0.0832712732923654	0.270048629807408
5	148745781	148765805	2	neutral	AA	100	somatic	0	0.0458887671011863	0.0939114420833629
5	153816859	153834380	2	neutral	AA	100	germline	1	0.553873919927485	0.664015859590538
5	162251969	162261981	2	neutral	AA	100	somatic	0	0.117936176895793	0.170228337394827
5	164159255	164164261	2	neutral	AA	100	somatic	0	0.852608064967119	0.991946903711697
5	175059820	175114886	2	neutral	AA	100	somatic	0	0.83479214987011	0.975311166103718
5	176912040	176929561	2	neutral	AA	54.568	germline	1	0.403687317172712	0.323636095286182
5	176929561	177097262	2	neutral	AA	64.2517	somatic	0	3.48067396273439e-18	6.66133814775094e-15
5	177385107	177397622	2	neutral	AA	9.92142	somatic	0	0.946695910416299	0.314569399265453
5	181224709	181282278	2	neutral	AA	8.81365	somatic	0	0.78286125774879	0.924683463554158
6	255306	295354	3	gain	-	-1	germline	1	1.99060683977448e-11	1.89293025698589e-13
6	295354	382959	4	gain	-	-1	germline	1	2.54688656908277e-23	0
6	32486437	32566533	0	loss	-	-1	germline	1	2.01534968570786e-13	4.44089209850063e-16
6	32566533	32574042	1	loss	A	-1	germline	1	NA	NA
6	32579048	32666653	1	loss	A	-1	germline	1	2.0627196427432e-07	3.24707730703366e-08
6	60229689	60239701	3	gain	-	-1	somatic	0	0.000532942816282699	0.000672091606868763
6	67470868	67478377	1	loss	A	-1	somatic	0	0.00271580939664711	0.00498116762362621
6	73883554	73891063	1	loss	A	-1	germline	1	0.00270880563157782	0.00497539814830705
6	101914651	101919657	2	neutral	AA	54.5678	somatic	0	0.871790892834671	0.751087829816146
6	104114788	104214908	2	neutral	AA	100	germline	1	0.0438816216909962	0.136949147385106
6	104385112	104435172	2	neutral	AA	35.846	somatic	0	0.0325716609537857	0.093568993618303
6	107846761	107904330	2	neutral	AA	81.582	somatic	0	0.00267194708099396	0.00441771799512269
6	108102067	108119588	2	neutral	AA	27.7567	somatic	0	0.598252162616305	0.951030025415111
6	121005032	121192757	2	neutral	AA	100	somatic	0	0.0511452977405243	0.00981466329911984
6	121590734	121635788	2	neutral	AA	100	somatic	0	0.312664312099013	0.563796286059159
6	122834725	122839731	2	neutral	AA	54.5681	somatic	0	0.758458544774846	0.826715114833728
6	128884476	128979590	2	neutral	AA	28.9621	somatic	0	0.538883013151507	0.740034133279771
6	129214872	129217375	2	neutral	AA	100	somatic	0	0.106414096581837	0.308180920210319
6	131792962	131797968	1	loss	A	-1	somatic	0	0.0143701625878305	0.0367681628945173
6	132373658	132386173	2	neutral	AA	36.3786	somatic	0	0.146042589024538	0.246847075649719
6	142065274	142252999	2	neutral	AA	100	germline	1	0.881605177250952	0.722135184415892
6	147694521	147747084	2	neutral	AA	54.5678	somatic	0	0.611008737484067	0.932986314086381
6	147829683	147837192	2	neutral	AA	54.5679	somatic	0	0.591617129420917	0.410901291697989
6	148685709	148688212	2	neutral	AA	100	somatic	0	0.167914215770528	0.39542505073998
6	151576674	151579177	2	neutral	AA	100	somatic	0	0.241361277160889	0.483451404687361
6	151726854	151749381	2	neutral	AA	54.5678	somatic	0	0.297969883262288	0.263109712710895
6	153418882	153431397	2	neutral	AA	0.304589	somatic	0	0.0138661731974213	0.00659855056508296
6	153894452	153911973	2	neutral	AA	10.9303	somatic	0	0.23458139602394	0.511390579910139
6	154349998	154357507	2	neutral	AA	19.9732	somatic	0	0.656634014723996	0.633971374952223
6	155033317	155045832	2	neutral	AA	54.6128	somatic	0	0.00547403388948299	0.00721343575799038
6	155238563	155288623	2	neutral	AA	100	somatic	0	0.207906922011389	0.213260094661169
6	155453821	155531414	2	neutral	AA	54.5683	somatic	0	0.000857080280061746	0.000571734123164247
6	156930591	156935597	2	neutral	AA	54.5693	somatic	0	0.682875752541964	0.827532113810372
6	157223442	157248472	2	neutral	AA	100	germline	1	0.137330445843472	0.164018426404042
6	157278508	157283514	0	loss	-	-1	germline	1	0.0143150877951899	0.0366573290915027
6	157308544	157311047	10	gain	AAAAAAABBB	11.2605	germline	1	0.0832675876223731	0.270042228542987
6	157313550	157316053	6	gain	AAAABB	6.36341	germline	1	0.0832847885463254	0.270072102057898
6	158815350	158845386	2	neutral	AA	49.7174	somatic	0	0.00760978469410646	0.0182510504160741
6	161991657	162021693	2	neutral	AA	100	somatic	0	0.633255066077298	0.604968099771359
6	163300726	163313241	2	neutral	AA	54.5678	somatic	0	0.693902971592977	0.935090279874041
6	165310635	165320647	1	loss	A	-1	germline	1	0.0170595580795037	0.0450304202616331
6	165453306	165465821	2	neutral	AA	54.5718	somatic	0	0.064206383782528	0.0576271533100022
6	165676073	165686085	2	neutral	AA	13.8919	somatic	0	0.0821183265084581	0.252540275473002
6	166189188	166316841	2	neutral	AA	35.9086	somatic	0	0.406564382547463	0.396267934986109
6	166872507	166900040	2	neutral	AA	100	somatic	0	0.0599898749213497	0.118756847603722
6	167242951	167295514	2	neutral	AA	14.0637	somatic	0	0.00466619134521355	0.0288350279087027
6	167583359	167590868	2	neutral	AA	100	somatic	0	0.984670671772615	0.821215072205058
6	168657146	168717218	2	neutral	AA	12.1362	somatic	0	0.00138963638905355	0.00108239538788046
6	168717218	168739745	2	neutral	AA	100	somatic	0	0.550405821408094	0.921690731307922
7	903583	906086	5	gain	AAABB	93.2676	germline	1	0.0832847885463254	0.270072102057898
7	2365335	2402880	2	neutral	AA	3.86154	germline	1	0.384373391320943	0.166748874797177
7	9761700	9766706	1	loss	A	-1	somatic	0	0.0143412420596375	0.0367374276389973
7	20276803	20281809	1	loss	A	-1	somatic	0	0.0144028876182107	0.0369048404989936
7	22777300	22812342	2	neutral	AA	36.4934	somatic	0	0.123865049151827	0.0360487854471192
7	24504370	24674574	2	neutral	AA	20.6629	somatic	0	0.0277222702744938	0.0180291791907469
7	26096278	26106290	1	loss	A	-1	somatic	0	0.000541306019565957	0.000689026878475163
7	30579151	30589163	2	neutral	AA	100	somatic	0	0.573372048325787	0.445079053822876
7	30937080	30952098	2	neutral	AA	54.5678	somatic	0	0.00917047652593234	0.0278861709062912
7	39502346	39512358	1	loss	A	-1	somatic	0	0.000599202803994312	0.000859427823423409
7	44801197	44873784	2	neutral	AA	33.6991	somatic	0	1.59516215136285e-06	2.40300057818832e-06
7	48540679	48553194	1	loss	A	-1	somatic	0	0.000108503474858269	9.17989325311952e-05
7	53454068	53471589	2	neutral	AA	100	somatic	0	0.489007042391165	0.265919968547968
7	54395196	54397699	0	loss	-	-1	somatic	0	0.0832688161643539	0.270044362285492
7	55891990	55904505	2	neutral	AA	56.6293	somatic	0	0.000570101524341678	0.000783914458454604
7	57483898	57486401	2	neutral	AA	29.7945	somatic	0	0.14959120529893	0.37107614371708
7	57486401	57496413	3	gain	AAB	1.50735	somatic	0	0.000692979923701517	0.00127865246716841
7	57496413	57498916	3	gain	AAB	46.8366	somatic	0	0.0836651709080676	0.27073206745586
7	57821803	57931935	2	neutral	AA	37.4848	somatic	0	0.836615334012859	0.946081073039719
7	57931935	57936941	3	gain	AAA	9.05812	somatic	0	0.0143205189818505	0.0366549927452712
7	57936941	57981995	2	neutral	AA	1.39069	germline	1	0.0285676162253239	0.057136213079201
7	58062091	58067097	4	gain	AABB	18.1839	somatic	0	0.0143163484444103	0.0366500284421053
7	61045667	61053176	4	gain	-	-1	somatic	0	0.00270303774434612	0.00496245404429618
7	62294664	62357239	3	gain	AAB	0.412299	somatic	0	4.65604044706906e-10	6.82751633007683e-11
7	62402293	62407299	5	gain	-	-1	germline	1	0.0143123728832986	0.0366409774036217
7	62437335	62454856	3	gain	AAB	2.29641	somatic	0	6.34627336053647e-05	0.0014806615934172
7	65225677	65230683	1	loss	A	-1	somatic	0	0.0150806720361901	0.0389710595232154
7	87307143	87319658	1	loss	A	-1	somatic	0	0.000108928382328867	9.20441434995034e-05
7	90180587	90183090	0	loss	-	-1	somatic	0	0.0832694304408505	0.270045429161356
7	100948493	100956002	3	gain	AAB	2.27939	germline	1	0.00271052401306184	0.00498241749253359
7	100956002	100961008	9	gain	AAAAABBBB	1.07498	germline	1	0.0143079136569252	0.0366360147612517
7	100961008	100976026	3	gain	AAB	1.3408	germline	1	2.23150121224433e-05	1.25909639396848e-05
7	101396530	101436578	2	neutral	AA	21.8311	somatic	0	1.75122669691684e-07	1.55285350023071e-07
7	108267265	108444978	2	neutral	AA	36.3466	somatic	0	0.0265873321520701	0.0050105620478571
7	109811616	109814119	0	loss	-	-1	germline	1	0.0832737304791109	0.270052897378553
7	116291883	116301895	1	loss	A	-1	somatic	0	0.000538733733123116	0.000677789997159728
7	134100728	134113243	1	loss	A	-1	somatic	0	0.000107925922978204	9.12376636007517e-05
7	143847410	143849913	4	gain	AAAB	30.7053	somatic	0	0.0832915468396188	0.270083838741587
7	148375337	148377840	0	loss	-	-1	somatic	0	0.0832663590950755	0.270040094812805
7	149023614	149033626	2	neutral	AA	93.3662	somatic	0	0.257010551907964	0.574913530434306
7	152400161	152402664	4	gain	AAAB	10.382	germline	1	0.0832854029182685	0.270073169013758
7	152402664	152407670	11	gain	AAAAAAAAABB	4.28709	germline	1	0.0143066536629171	0.0366325120736568
7	157338580	157371119	2	neutral	AA	73.1807	somatic	0	0.748756633393744	0.692045501422397
7	157438700	157618916	2	neutral	AA	41.4933	somatic	0	9.41038123026409e-10	8.95363437503072e-07
7	158149552	158152055	5	gain	AAABB	7.68207	somatic	0	0.0832847885463254	0.270072102057898
7	158152055	158174582	2	neutral	AA	8.68439	somatic	0	0.205628343286355	0.161328065580644
7	158595086	158597589	4	gain	AABB	9.33979	germline	1	0.0832854029182685	0.270073169013758
7	158912967	158915470	4	gain	AAAB	15.4413	somatic	0	0.0832872460561252	0.2700763698998
7	158973039	159050632	2	neutral	AA	7.35241	somatic	0	0.00071313614968806	0.010919661048319
8	643271	650780	1	loss	A	-1	germline	1	0.0143623805869669	0.0367570370627797
8	4265112	4267615	0	loss	-	-1	germline	1	0.083265130582461	0.270037961094921
8	25115102	25135126	1	loss	A	-1	germline	1	9.86191261316203e-07	2.44163179119461e-07
8	38073133	38075636	0	loss	-	-1	somatic	0	0.0832768020451391	0.270058231911711
8	39374693	39529879	1	loss	A	-1	germline	1	1.09287547469112e-39	0
8	43236822	43239325	5	gain	-	-1	germline	1	0.0832847885463254	0.270072102057898
8	43239325	43241828	8	gain	-	-1	germline	1	0.0832755734077149	0.270056098089209
8	46493225	46498231	1	loss	A	-1	germline	1	0.017545154405191	0.04651129167026
8	46613369	46628387	3	gain	AAA	72.2247	germline	1	2.21712180695425e-05	1.2338162858283e-05
8	49399208	49884790	2	neutral	AA	13.0945	germline	1	0.0026410962258616	0.00256443259423589
8	51356554	51369069	2	neutral	AA	100	somatic	0	0.752251438025451	0.798268490025411
8	60277246	60319797	2	neutral	AA	18.1193	somatic	0	0.592976330113248	0.223358440925147
8	66374554	66414602	2	neutral	AA	36.3786	somatic	0	0.50212737350563	0.627193877936212
8	66544758	66567285	2	neutral	AA	36.712	somatic	0	0.632833972397892	0.926425482214458
8	67445838	67503407	2	neutral	AA	27.2839	somatic	0	0.0166398575012101	0.0545510518127443
8	67503407	67518425	2	neutral	AA	54.5678	somatic	0	0.960471734889148	0.710654126101218
8	84110812	84163375	2	neutral	AA	18.6046	somatic	0	0.887601464377528	0.842814138283692
8	89644945	89654957	2	neutral	AA	54.5678	somatic	0	0.425320246472246	0.266702543864256
8	97033801	97106388	2	neutral	AA	100	somatic	0	0.371820410067376	0.667622306257737
8	97601982	97839767	2	neutral	AA	18.0799	somatic	0	5.4284538438514e-17	1.8757218001042e-12
8	103346367	103376403	2	neutral	AA	100	somatic	0	0.51948578094992	0.258908773292973
8	105088455	105098467	2	neutral	AA	54.5678	somatic	0	0.0584657117114554	0.0836194100381018
8	108264762	108272271	1	loss	A	-1	somatic	0	0.00271648404826224	0.00498110811322827
8	111050601	111280877	2	neutral	AA	23.1063	somatic	0	0.00118535643171561	0.0164145877131397
8	111280877	111285883	1	loss	A	-1	somatic	0	0.0143348815831305	0.0366985285838051
8	111656327	111693872	2	neutral	AA	100	somatic	0	0.0356558685628411	0.0957943306567143
8	113042989	113047995	1	loss	A	-1	somatic	0	0.0143507145552202	0.0367260174129844
8	119055195	119107758	2	neutral	AA	17.6104	somatic	0	0.415480750002982	0.488863163176678
8	119628382	119653412	2	neutral	AA	100	somatic	0	0.0754127664479231	0.120190707803475
8	140035341	140045353	2	neutral	AA	54.5678	somatic	0	0.674152767914487	0.848221092727806
8	141890064	141920100	2	neutral	AA	18.1893	somatic	0	0.0745322348327825	0.331469862386506
8	144125243	144127746	4	gain	AAAB	8.58775	somatic	0	0.0832964622410364	0.270092374745381
9	40911535	40926553	6	gain	-	-1	germline	1	0.00270148269336278	0.004959489568367
9	69270525	69283040	2	neutral	AA	27.8918	somatic	0	0.0265175963639729	0.0626921363392161
9	82689108	82741671	2	neutral	AA	27.2856	somatic	0	0.0696155367821178	0.130677542594914
9	89957820	89980347	2	neutral	AA	36.3786	somatic	0	0.248202478385286	0.564464636715408
9	95719726	95739750	2	neutral	AA	100	somatic	0	0.0739675183000677	0.212508243347806
9	96095176	96122709	2	neutral	AA	100	somatic	0	0.17502609396937	0.201668302793792
9	98065037	98090067	2	neutral	AA	54.5678	somatic	0	0.413803309061993	0.353670647313175
9	107363682	107368688	2	neutral	AA	54.5678	somatic	0	0.0963541415158521	0.128651911064297
9	112642509	112947875	2	neutral	AA	16.8672	somatic	0	0.000720956185116829	0.00255059002437874
9	113055504	113100558	1	loss	A	-1	somatic	0	0.00894949450740083	0.00334020694606374
9	128035959	128063492	2	neutral	AA	100	somatic	0	0.00010308916035429	0.000687614345667997
9	128649194	128651697	0	loss	-	-1	somatic	0	0.0832694304408505	0.270045429161356
9	129425124	129445148	3	gain	AAB	0.282104	germline	1	1.08838683610315e-06	3.65227952991987e-07
9	131384973	131394985	1	loss	A	-1	somatic	0	0.000555347628949459	0.00071898777214785
9	134198345	134225878	2	neutral	AA	55.5677	somatic	0	0.0826549619783597	0.112777182117569
9	134451148	134478681	2	neutral	AA	100	somatic	0	0.12657846549911	0.269082804516929
9	135670109	135717666	2	neutral	AA	15.843	somatic	0	0.0465863291958675	0.279873221115242
9	137101825	137104328	3	gain	AAB	4.13557	somatic	0	0.0833032213016568	0.270104112072129
9	137397179	137497299	2	neutral	AA	24.4504	somatic	0	0.221711391865619	0.543464273396385
10	5847008	5852014	1	loss	A	-1	somatic	0	0.0143144090246316	0.0366541166490262
10	38526176	38528679	13	gain	-	-1	germline	1	0.083265130582461	0.270037961094913
10	38573733	38578739	3	gain	-	-1	germline	1	0.0144692201303242	0.037088555298826
10	38578739	38581242	5	gain	-	-1	germline	1	0.0832847885463254	0.270072102057898
10	41822627	41842651	2	neutral	AA	10.0275	germline	1	0.369154777600034	0.199046844884839
10	41857669	41915238	27	gain	AAAAAAAAAAAAAAAAAABBBBBBBBB	8.55478	germline	1	2.20922996446089e-05	1.22898934860061e-05
10	42300700	42415838	2	neutral	AA	1.72248	germline	1	0.309063174383758	0.677662331399045
10	46515752	46560806	5	gain	AAABB	0.458892	germline	1	4.27729950737203e-12	2.54241072639161e-14
10	47008843	47023861	2	neutral	AA	100	germline	1	0.832616824783549	0.732297590880815
10	67726174	67728677	0	loss	-	-1	somatic	0	0.0832694304408505	0.270045429161356
10	79124836	79149866	2	neutral	AA	21.8631	somatic	0	0.000215683427028706	0.00132310564835847
10	108274774	108369888	2	neutral	AA	9.32752	somatic	0	0.352390514543548	0.662628924534646
10	112352161	112357167	0	loss	-	-1	germline	1	0.0143063629089696	0.0366322201962525
10	112389706	112412233	2	neutral	AA	22.189	somatic	0	0.0839320040980065	0.194998883135273
10	113335840	113380894	2	neutral	AA	54.5678	somatic	0	0.0112840323156136	0.0536749326818329
10	115303198	115353258	2	neutral	AA	36.3786	germline	1	0.923624706296931	0.904264940960824
10	119946263	119993820	2	neutral	AA	18.9668	somatic	0	0.00105388110045981	0.0100179845639397
10	120466887	120469390	0	loss	-	-1	somatic	0	0.083265130582461	0.270037961094921
10	123250223	123365361	2	neutral	AA	3.1885	germline	1	0.0151717101264041	0.0469549466368814
10	128463972	128466475	6	gain	AAABBB	46.2282	germline	1	0.0832847885463254	0.270072102057898
11	3654380	3656883	11	gain	AAAAAAAAAAB	35.9087	germline	1	0.0832669733568889	0.270041161676353
11	10047042	10109617	2	neutral	AA	36.3786	somatic	0	2.32509788981159e-06	1.15381801690795e-06
11	22516988	22614605	2	neutral	AA	87.829	somatic	0	0.264103893293884	0.48558327280553
11	25320348	25422971	1	loss	A	-1	germline	1	3.1024505011553e-27	0
11	28984740	28992249	1	loss	A	-1	somatic	0	0.00271975294876882	0.00499010156727131
11	32401335	32448892	2	neutral	AA	100	somatic	0	0.749280458966443	0.978240587180671
11	35913044	35930565	2	neutral	AA	36.3786	somatic	0	0.379961543184172	0.289293665013499
11	45381893	45404420	2	neutral	AA	27.8447	somatic	0	0.108744843794956	0.42973935268541
11	46142805	46245428	2	neutral	AA	100	somatic	0	6.72586520149358e-07	2.94992491164381e-05
11	46796088	47003837	2	neutral	AA	73.9963	somatic	0	7.19463438725543e-13	3.59226426382975e-10
11	48693362	48710883	2	neutral	AA	27.2841	somatic	0	0.675855269225523	0.698458338909264
11	48713386	48715889	0	loss	-	-1	somatic	0	0.0832761877245916	0.270057164998926
11	48715889	48941159	2	neutral	AA	0.694177	somatic	0	0.231032099893534	0.278544501891169
11	50175138	50177641	0	loss	-	-1	somatic	0	0.0832774163693578	0.270059298827573
11	54755628	54778155	1	loss	A	-1	germline	1	9.81705516136616e-07	2.31395719030303e-07
11	55118563	55123569	1	loss	A	-1	somatic	0	0.014365103864346	0.0367356720177737
11	58039564	59210968	2	neutral	AA	100	somatic	0	0.868777396454579	0.464760199035453
11	65415905	65465965	2	neutral	AA	27.2839	somatic	0	0.194733096079251	0.278404288857989
11	82734162	83062055	2	neutral	AA	100	germline	1	0.0633522544122623	0.0377937307954691
11	87222041	87299634	2	neutral	AA	64.1276	somatic	0	6.4414247931713e-05	7.4949337927066e-05
11	87975444	87977947	1	loss	A	-1	somatic	0	0.0832835598134528	0.270069968155416
11	104400130	104402633	0	loss	-	-1	somatic	0	0.083265130582461	0.270037961094921
11	108354870	108465002	2	neutral	AA	10.0331	somatic	0	5.61869888417906e-06	2.0967835189456e-05
11	125800780	125895894	2	neutral	AA	19.5277	somatic	0	0.487286830874005	0.29714299323823
11	127850737	127948354	2	neutral	AA	18.9599	somatic	0	0.83390546437049	0.579261745294239
11	128937039	129304980	2	neutral	AA	34.9897	somatic	0	0.770663692599187	0.812500099210739
11	131264829	131267332	1	loss	A	-1	somatic	0	0.0832878604427532	0.270077436867976
11	132055777	132060783	3	gain	AAB	17.8388	somatic	0	0.0143239143964775	0.0366625863468928
12	2255203	2257706	6	gain	-	-1	germline	1	0.0832841741780535	0.270071035105114
12	11383644	11391153	3	gain	-	-1	somatic	0	0.00270584951292484	0.00496636963964192
12	18094187	18099193	1	loss	A	-1	somatic	0	0.0162438095669038	0.0424997666695174
12	37615084	37625096	1	loss	A	-1	somatic	0	0.000586164151373879	0.000784696985254962
12	37695180	37742737	2	neutral	AA	11.5083	somatic	0	0.00963095119981492	0.0168926488658079
12	43865075	43870081	2	neutral	AA	54.5679	somatic	0	0.666828194648857	0.807128491475187
12	45509546	45517055	1	loss	A	-1	somatic	0	0.00277005103279888	0.00517232416768898
12	54009734	54337627	2	neutral	AA	53.3264	somatic	0	0.11819700985278	0.138885886074034
12	59541364	59553879	1	loss	A	-1	somatic	0	0.000110090624830842	9.43617285611431e-05
12	70479474	70484480	1	loss	A	-1	somatic	0	0.0143623805869669	0.0367336238857808
12	71130254	71150278	2	neutral	AA	54.5679	somatic	0	0.73896181068554	0.87209228730133
12	71548255	71643369	2	neutral	AA	100	somatic	0	0.573940142936533	0.284314719891707
12	71643369	71683417	2	neutral	AA	54.6128	somatic	0	0.00401655284137485	0.00314338830466376
12	73525625	73555661	2	neutral	AA	100	somatic	0	0.0718067749712334	0.153517074431707
12	76536734	76581788	2	neutral	AA	100	somatic	0	0.207777177332944	0.661554042511754
12	79760598	79768107	4	gain	-	-1	germline	1	0.0027021540923404	0.00496067516388432
12	84641448	84648957	1	loss	A	-1	somatic	0	0.00291325614396483	0.00559516368814317
12	90090479	90097988	1	loss	A	-1	somatic	0	0.00274461749597835	0.00509086643447332
12	92936390	93039013	2	neutral	AA	80.3715	somatic	0	0.00259440086743578	0.00991381019235427
12	94773592	94793616	2	neutral	AA	13.9128	somatic	0	0.79752575966159	0.736855448432838
12	95141533	95264180	2	neutral	AA	14.8461	somatic	0	1.56371624013411e-09	4.3762691026572e-08
12	95614600	95619606	1	loss	A	-1	somatic	0	0.01492126156249	0.038468323559238
12	104820634	104830646	2	neutral	AA	100	somatic	0	0.655448386197006	0.975718177132213
12	110880397	110907930	2	neutral	AA	19.7244	somatic	0	0.0228383141195321	0.046832449891122
12	111315919	112367179	2	neutral	AA	20.6851	somatic	0	3.5676605400596e-77	0
12	116850052	116920136	2	neutral	AA	36.5192	somatic	0	0.00157554250910676	0.00601062832790189
12	116920136	117085334	2	neutral	AA	36.3786	germline	1	0.0418788885561046	0.148468069713438
12	118169133	118199169	2	neutral	AA	100	somatic	0	0.0146390197965902	0.0468208382778855
12	128083516	128086019	0	loss	-	-1	somatic	0	0.0832761877245916	0.270057164998926
12	130533953	130626564	2	neutral	AA	40.8472	somatic	0	0.00579302651087986	0.0207866501820648
12	130644085	130646588	5	gain	AAABB	7.19514	somatic	0	0.0832847885463254	0.270072102057898
12	132213466	132283550	2	neutral	AA	4.79383	germline	1	0.00444543557622161	0.00772991855779914
13	22018891	22023897	0	loss	-	-1	germline	1	0.0143103369974577	0.0366421451696542
13	52310197	52320209	3	gain	-	-1	germline	1	0.00270464666862484	0.00496470813223115
13	63028043	63063085	3	gain	-	-1	germline	1	2.04647860263277e-09	1.91712268282629e-09
13	63063085	63068091	4	gain	-	-1	germline	1	0.0143156696211233	0.0366482764755558
13	88105600	88108103	2	neutral	AA	100	somatic	0	0.242707517381839	0.484904951098787
13	88446008	88468535	2	neutral	AA	36.3786	somatic	0	0.792533599506007	0.868358051999306
13	90235653	90238156	2	neutral	AA	100	somatic	0	0.118173407864811	0.32621583081855
13	90871415	90881427	2	neutral	AA	54.5693	somatic	0	0.126803346914822	0.145166967557287
13	95011377	95018886	2	neutral	AA	54.5686	somatic	0	0.91107131229558	0.850379578149385
13	95056431	95073952	2	neutral	AA	36.379	somatic	0	0.126943103560546	0.274954896507345
13	95339270	95354288	2	neutral	AA	27.3876	somatic	0	0.0494026127021194	0.137463328337817
13	96345476	96347979	2	neutral	AA	100	somatic	0	0.836317773197181	0.91285754799994
13	96383021	96395536	2	neutral	AA	100	somatic	0	0.54494831241047	0.719297334857167
13	96493153	96550722	2	neutral	AA	54.6578	somatic	0	0.0370155821258567	0.0502175162457081
13	100029892	100069940	2	neutral	AA	73.3924	somatic	0	2.14926054960496e-10	8.53435100367506e-11
13	104903233	104938275	2	neutral	AA	100	somatic	0	0.28483954798545	0.529643665372265
13	106092158	106094661	2	neutral	AA	100	somatic	0	0.131670044697461	0.346020445384297
13	106229823	106232326	2	neutral	AA	100	somatic	0	0.602571334023908	0.791543841347103
13	107621491	107623994	2	neutral	AA	100	somatic	0	0.303257329967583	0.548739491343041
13	109215902	109220908	1	loss	A	-1	somatic	0	0.0202843581220084	0.0550747570877029
13	109651424	109653927	2	neutral	AA	100	somatic	0	0.394069850883962	0.633879524860882
13	109769065	109774071	2	neutral	AA	100	somatic	0	0.213655629151371	0.667591511919685
13	110727714	110730217	2	neutral	AA	100	somatic	0	0.820083065670624	0.906270682560548
13	111874088	111906627	2	neutral	AA	67.101	somatic	0	0.000551327493354946	0.00217729370607955
13	113080534	113093049	2	neutral	AA	27.8765	somatic	0	0.0108208245786092	0.0508098267976504
13	113668739	113828931	2	neutral	AA	22.1435	somatic	0	0.00582524492576937	0.0252793747843437
13	114154321	114156824	1	loss	A	-1	somatic	0	0.0833216573614647	0.27013612485555
14	0	16091787	3	gain	AAB	-1	germline	1	NA	NA
14	16091787	16094290	7	gain	-	-1	germline	1	0.0832774163693578	0.270059298827565
14	16094290	16096793	4	gain	-	-1	germline	1	0.0832927756679448	0.270085972724074
14	16096793	19733652	3	gain	AAB	-1	germline	1	0.331630375543892	0.659813189995976
14	19733652	19956419	3	gain	AAB	0.374797	germline	1	1.95484792001014e-28	0
14	21328063	21420674	2	neutral	AA	27.4038	somatic	0	4.67614159665685e-07	1.95135783421785e-05
14	34175962	34216010	2	neutral	AA	54.5781	somatic	0	0.721378060183709	0.321767699793158
14	35712804	35760361	2	neutral	AA	27.2843	somatic	0	2.24684101404896e-05	0.000265650439038811
14	36268470	36301009	2	neutral	AA	36.3786	somatic	0	0.0735899549076973	0.152563251352249
14	37312221	37409838	2	neutral	AA	27.5509	somatic	0	0.0224048249472212	0.022830972064146
14	41136805	41194374	1	loss	A	-1	germline	1	1.50383304153042e-14	1.11022302462516e-16
14	46490722	46495728	2	neutral	AA	100	somatic	0	0.204091974203728	0.484106725707414
14	49021255	49031267	2	neutral	AA	100	somatic	0	0.981299410226463	0.963967534915186
14	50217689	50357857	2	neutral	AA	100	somatic	0	4.90475604940166e-12	8.90383988760846e-10
14	52527958	52530461	1	loss	A	-1	somatic	0	0.0833087517726112	0.270113715616395
14	56687944	56727992	2	neutral	AA	36.3962	somatic	0	0.950856567896067	0.797410348924898
14	58717877	58732895	2	neutral	AA	100	somatic	0	0.30036876729063	0.632768292366768
14	59749113	59751616	1	loss	A	-1	somatic	0	0.0833044502695004	0.270106246171546
14	64016728	64036752	2	neutral	AA	36.3786	somatic	0	0.0685921183427635	0.116404593645686
14	64537352	64547364	2	neutral	AA	54.5678	somatic	0	0.200498399434154	0.169736097071855
14	65130563	65143078	2	neutral	AA	100	somatic	0	0.0835819573243445	0.101416123269133
14	67653587	67763719	2	neutral	AA	50.5766	somatic	0	0.0526972235472993	0.0704099517189979
14	72597012	72684617	2	neutral	AA	36.3786	somatic	0	2.34568659949019e-05	0.000211722010545756
14	76546746	76706938	2	neutral	AA	100	somatic	0	0.0144379998191079	0.0374069717025393
14	77017310	77022316	2	neutral	AA	100	germline	1	0.0197468689470294	0.0491776601967014
14	79079782	79134848	2	neutral	AA	27.3104	somatic	0	0.300663404965267	0.378176341715874
14	82674090	82676593	1	loss	A	-1	somatic	0	0.0833173553185883	0.270128654958396
14	85109509	85139545	2	neutral	AA	54.5678	somatic	0	0.298884966074892	0.526181941487164
14	88518595	88523601	2	neutral	AA	100	somatic	0	0.0421389432521579	0.0873862668160277
14	89882730	89887736	2	neutral	AA	54.5728	somatic	0	0.234358768840436	0.61821499107575
14	99419160	99421663	3	gain	AAA	75.6316	somatic	0	0.0833032213016568	0.270104112072129
14	99927269	99929772	5	gain	AAABB	6.57816	somatic	0	0.0832847885463254	0.270072102057898
14	100525486	100527989	3	gain	AAB	8.23046	somatic	0	0.0833099808065458	0.270115849771178
14	103061025	103083552	2	neutral	AA	21.8271	somatic	0	0.595036105809661	0.748291068122272
15	0	17080472	10	gain	AAAAAAABBB	-1	germline	1	NA	NA
15	17080472	17082975	18	gain	-	-1	germline	1	0.083265130582461	0.270037961094913
15	17082975	20271797	10	gain	AAAAAAABBB	-1	germline	1	0.0485335274276271	0.0607965392637961
15	20271797	20359402	10	gain	AAAAAAABBB	2.93336	germline	1	2.0353724247328e-07	3.04779852466908e-08
15	20379426	20381929	3	gain	AAB	40.7432	germline	1	0.0833044502695004	0.270106246171537
15	22782306	23465625	2	neutral	AA	5.62574	somatic	0	0.000744234793102796	0.00450382041363151
15	25690792	25700804	2	neutral	AA	100	somatic	0	0.464253941850539	0.697986925706394
15	27517982	27550521	2	neutral	AA	36.3786	somatic	0	0.574801805152081	0.529531992602686
15	37968007	38010558	2	neutral	AA	100	somatic	0	0.270778919504247	0.337423659022616
15	42243131	42265658	2	neutral	AA	27.3529	somatic	0	0.0623133706993419	0.100262083545457
15	45764852	45794888	2	neutral	AA	100	somatic	0	0.120272319674752	0.36785992387034
15	46976304	47136496	2	neutral	AA	5.51823	somatic	0	0.749295555657544	0.744733807208467
15	58575206	58700356	2	neutral	AA	20.7757	somatic	0	2.38539884702052e-05	4.47232572529099e-05
15	61098230	61105739	2	neutral	AA	100	somatic	0	0.698735607694564	0.896695803335891
15	62812785	62830306	2	neutral	AA	100	somatic	0	0.507936080734135	0.698742144435976
15	68832500	68842512	2	neutral	AA	18.3058	germline	1	0.690178989693478	0.591810859628213
15	70016419	70021425	2	neutral	AA	100	somatic	0	0.78099249002241	0.680611855475384
15	70867439	71072685	2	neutral	AA	30.2613	somatic	0	4.58460549204345e-05	0.00109340394080426
15	72887360	72907384	2	neutral	AA	100	germline	1	0.0195875248235194	0.00604441728655469
15	76476662	76514207	2	neutral	AA	36.5581	somatic	0	0.00747719703213574	0.0238514982163013
15	77442820	77537934	2	neutral	AA	21.6213	somatic	0	0.0239502760729711	0.0246584383787453
15	85895451	85925487	2	neutral	AA	28.6145	somatic	0	0.258628164221894	0.236167957099132
15	93459517	93472032	2	neutral	AA	54.5678	germline	1	0.189528096402928	0.268753428263894
16	1023727	1026230	6	gain	AAAABB	13.2862	germline	1	0.0832835598134528	0.270069968155407
16	1026230	1058769	2	neutral	AA	18.1308	germline	1	0.0853774357045947	0.0310274960393373
16	21523297	21583369	4	gain	AABB	3.73643	germline	1	9.24939999367667e-09	5.59595370042132e-10
16	22614605	22699707	4	gain	AABB	0.996322	germline	1	2.55318029687892e-23	0
16	23030103	23035109	2	neutral	AA	100	somatic	0	0.0356810223305034	0.0701941981860977
16	25327857	25332863	1	loss	A	-1	germline	1	0.0143180941203877	0.0366503204436566
16	26964819	26987346	2	neutral	AA	100	somatic	0	0.00516515299983431	0.0110918095118278
16	34060824	34065830	15	gain	AAAAAAAAAABBBBB	4.95495	germline	1	0.0143074290322612	0.0366354309596373
16	34083351	34085854	15	gain	AAAAAAAAAAAAAAA	100	germline	1	0.083265130582461	0.270037961094913
16	34085854	34095866	2	neutral	AA	25.9494	germline	1	0.0198941409541142	0.0746193245078558
16	34095866	34098369	11	gain	AAAAAAABBBB	5.03986	germline	1	0.0832669733568889	0.270041161676353
16	34098369	34100872	4	gain	AAAA	4.42992	germline	1	0.0832860172938828	0.270074235972695
16	34100872	34160944	2	neutral	AA	6.00751	somatic	0	0.113676506437616	0.284335474603597
16	34160944	34193483	2	neutral	AA	-1	somatic	0	0.0143132454840122	0.0366436049229807
16	34193483	34211004	2	neutral	AA	2.08313	germline	1	0.00367926260395679	0.0179351628690877
16	34211004	34213507	4	gain	AABB	3.09957	somatic	0	0.0832854029182685	0.270073169013758
16	34213507	34218513	2	neutral	AA	-1	germline	1	NA	NA
16	34218513	35097066	2	neutral	AA	1.22459	somatic	0	1.13833487642565e-07	4.49813048897241e-06
16	35339857	35427462	3	gain	AAB	11.8203	germline	1	1.24693627164229e-24	0
16	35988134	36088254	2	neutral	AA	2.05812	germline	1	0.107817292772859	0.116831959259166
16	36123296	36125799	6	gain	-	-1	germline	1	0.0832835598134528	0.270069968155407
16	50467989	50478001	2	neutral	AA	100	germline	1	0.48010878380566	0.412566971214246
16	53021049	53031061	2	neutral	AA	100	somatic	0	0.0436238965588389	0.0484506326221891
16	70149078	70161593	4	gain	AABB	3.44923	germline	1	0.000107652211100225	9.08840017537216e-05
16	74108824	74111327	0	loss	-	-1	somatic	0	0.0832761877245916	0.270057164998926
16	74989880	75087497	2	neutral	AA	32.8103	somatic	0	4.64682930692873e-05	0.000911705434707089
16	87202017	87224544	2	neutral	AA	4.00681	somatic	0	0.593345358662049	0.59175206133779
16	89732550	89917772	2	neutral	AA	8.5497	somatic	0	0.000188234522689873	0.00147685577744749
17	1471764	1569381	2	neutral	AA	12.5067	somatic	0	0.0574356944955261	0.0142666093114383
17	8397565	8405074	2	neutral	AA	100	somatic	0	0.0684706088598239	0.13756371094321
17	9170992	9196022	2	neutral	AA	21.8271	somatic	0	0.853371203937972	0.47781942396145
17	14544933	14577472	2	neutral	AA	27.4261	somatic	0	0.0103964631495485	0.0382180557124067
17	21290518	21303033	4	gain	AABB	0.260914	germline	1	0.000107636531792982	9.08803812089687e-05
17	21856196	21858699	5	gain	-	-1	somatic	0	0.0832847885463254	0.270072102057898
17	21976340	21978843	23	gain	-	-1	germline	1	0.083265130582461	0.270037961094913
17	22124017	22154053	5	gain	AAABB	0.326271	germline	1	1.97856213785734e-09	7.56761320275245e-11
17	22704713	22717228	2	neutral	AA	3.87581	somatic	0	0.325301490635398	0.56811491810028
17	26782100	26834663	3	gain	-	-1	germline	1	3.67805662962972e-13	4.19664303308309e-13
17	26877214	26879717	5	gain	-	-1	germline	1	0.0832847885463254	0.270072102057898
17	26937286	26939789	15	gain	AAAAAAAAAABBBBB	5.02343	germline	1	0.083265130582461	0.270037961094913
17	31760567	31873202	2	neutral	AA	54.5679	somatic	0	1.77610365277193e-11	2.02713235086804e-09
17	41629896	41652423	2	neutral	AA	6.45437	somatic	0	0.740009845009775	0.679297665208489
17	53441553	53521649	2	neutral	AA	21.8271	somatic	0	0.838183183985658	0.829203204733924
17	54079818	54089830	1	loss	A	-1	somatic	0	0.000550174949543918	0.000721822183295973
17	56475189	56482698	2	neutral	AA	100	somatic	0	0.962080783937318	0.948720567321891
17	60752816	60770337	2	neutral	AA	54.5693	somatic	0	0.0912703605847519	0.16213823369642
17	65045461	65070491	2	neutral	AA	36.3786	germline	1	0.000451022828811438	0.00125490645741422
17	67813779	67936426	2	neutral	AA	10.5152	somatic	0	2.79239770831103e-12	5.4896154288997e-10
17	69555867	69650981	2	neutral	AA	18.0548	somatic	0	0.0394663888862942	0.0761011033127985
18	5306360	5308863	1	loss	A	-1	germline	1	0.0832946189379691	0.27008917372089
18	5323881	5326384	1	loss	A	-1	somatic	0	0.0832958478030092	0.270091307734146
18	40681259	40686265	1	loss	A	-1	somatic	0	0.0143420190822942	0.0367187047963675
18	41284482	41289488	1	loss	A	-1	germline	1	0.0143313868084569	0.0367067148627038
18	49143902	49158920	2	neutral	AA	100	somatic	0	0.163127684942895	0.413133521627004
18	49168932	49188956	2	neutral	AA	100	somatic	0	0.0453045119063873	0.0497011958535916
18	49231507	49319112	2	neutral	AA	100	somatic	0	0.00373030370061538	0.00511554544897586
18	50167629	50172635	1	loss	A	-1	germline	1	0.0143138272438929	0.0366471085385667
18	51166326	51248925	2	neutral	AA	22.49	germline	1	0.44306400296221	0.489711710110314
18	53859554	53887087	2	neutral	AA	60.0693	somatic	0	0.590604425636733	0.520025784590712
18	56655405	56710471	2	neutral	AA	15.5909	germline	1	0.0285975300906487	0.0746078056426667
18	65748804	65791355	2	neutral	AA	52.3446	somatic	0	0.583067853237852	0.454693478405231
18	66056673	66066685	1	loss	A	-1	somatic	0	0.00053995358370204	0.000683881897473038
18	69265519	69285543	2	neutral	AA	100	germline	1	0.288298852260679	0.548424746995621
18	71891166	71913693	2	neutral	AA	100	somatic	0	0.0162295668442444	0.0677103919506268
18	72259107	72289143	2	neutral	AA	54.5693	somatic	0	0.00612083334186688	0.0778609883444585
18	79199926	79202429	4	gain	AABB	37.3616	somatic	0	0.0832860172938828	0.270074235972695
19	2961049	2971061	2	neutral	AA	27.2841	somatic	0	0.0359250501847242	0.143425092318183
19	4039842	4069878	2	neutral	AA	51.1592	somatic	0	0.0010857219349332	0.0166081880406067
19	4780730	4868335	2	neutral	AA	13.6924	germline	1	3.23563266614117e-10	8.5701185814635e-08
19	5766912	5796948	2	neutral	AA	100	somatic	0	0.009636051037355	0.00771451650942023
19	7448928	7451431	12	gain	AAAAAAAABBBB	100	germline	1	0.0832663590950755	0.270040094812796
19	7639156	7646665	2	neutral	AA	13.6421	germline	1	0.619328069616877	0.866067719213148
19	8395062	8440116	2	neutral	AA	55.9118	somatic	0	5.67789810774599e-06	5.58312407064054e-05
19	12039430	12091993	2	neutral	AA	18.212	somatic	0	3.20262837773841e-06	2.82088390197721e-05
19	15643750	15676289	2	neutral	AA	11.2754	somatic	0	0.367552564813383	0.525636945357705
19	15879032	15884038	2	neutral	AA	36.3786	somatic	0	0.644811856482106	0.876758520131651
19	16522303	16534818	2	neutral	AA	36.3786	somatic	0	0.266983914709357	0.394229506499021
19	17781312	17788821	2	neutral	AA	54.5678	somatic	0	0.169843612285759	0.392973505808718
19	21480746	21638435	2	neutral	AA	70.4737	somatic	0	0.000282650212824929	0.0010791192734102
19	24329160	24404250	4	gain	AABB	0.238683	germline	1	4.98930071855994e-20	0
19	27337766	27340269	5	gain	AAABB	3.04193	germline	1	0.0832847885463254	0.270072102057898
19	27340269	27345275	2	neutral	AA	100	somatic	0	0.0756138259056388	0.242346699588245
19	27345275	27380317	6	gain	AAAABB	0.150706	germline	1	1.97827091454539e-09	7.56399387569218e-11
19	27380317	27382820	3	gain	AAB	14.3592	germline	1	0.0833400967261438	0.270168140408184
19	27382820	27400341	6	gain	AAAABB	0.209297	germline	1	4.59967180069157e-06	1.6647510958645e-06
19	29808227	29835760	2	neutral	AA	27.2839	somatic	0	0.405811617225287	0.405095150865534
19	32426365	32438880	2	neutral	AA	100	somatic	0	0.323349903681706	0.223580444175945
19	34391220	34393723	6	gain	AAAABB	6.2891	germline	1	0.0832847885463254	0.270072102057898
19	35362384	35369893	1	loss	A	-1	somatic	0	0.00271657282961049	0.00498491809276824
19	35980625	35993140	2	neutral	AA	27.2839	somatic	0	0.437848290154846	0.579860712781305
19	38851566	38869087	2	neutral	AA	27.2839	somatic	0	0.0201346767481583	0.042263493864095
19	38981722	38984225	1	loss	A	-1	somatic	0	0.0843289490493106	0.271880722343
19	39089351	39104369	2	neutral	AA	27.284	somatic	0	0.000632013919844636	0.000423688870624384
19	40533582	40568624	2	neutral	AA	27.2839	somatic	0	0.00161852639739992	0.00327747394222577
19	43980213	44000237	2	neutral	AA	36.3842	somatic	0	0.155095832920486	0.138101918132218
19	44450777	44453280	2	neutral	AA	100	germline	1	0.949184709338055	0.950949682702692
19	44768658	44783676	2	neutral	AA	13.5908	somatic	0	0.0499384630377726	0.036297522148699
19	46055200	46065212	2	neutral	AA	100	somatic	0	0.269388273189323	0.51960916699689
19	47276664	47336736	2	neutral	AA	53.8526	somatic	0	1.88005222104681e-05	0.00102269448461345
19	47794785	47819815	2	neutral	AA	24.8318	somatic	0	0.000854338197573924	0.00388573631472255
19	48450571	48483110	2	neutral	AA	18.9294	somatic	0	0.00122325524131038	0.00242424645952144
19	48803494	48818512	2	neutral	AA	24.8887	germline	1	0.000462480011464516	0.00180212906960364
19	52062400	52092436	2	neutral	AA	21.8303	somatic	0	0.000312115159249097	0.0015629454005831
19	55326312	55358851	2	neutral	AA	72.8194	somatic	0	0.0131841781908429	0.0234758390492279
19	56089727	56182338	2	neutral	AA	24.6912	somatic	0	0.000880487345418017	0.000127215743158104
19	56657908	56672926	2	neutral	AA	54.5678	somatic	0	0.691126105207201	0.605437924629719
19	58267337	58272343	2	neutral	AA	100	somatic	0	0.931027516099103	0.989735835611414
20	60072	67581	6	gain	-	-1	germline	1	0.0143118881254017	0.036640685467202
20	1581896	1601920	1	loss	A	-1	germline	1	9.75488719777355e-07	2.27928433238489e-07
20	8540236	8550248	2	neutral	AA	36.3786	somatic	0	0.55087307459309	0.932849996667048
20	12872929	12927995	2	neutral	AA	21.8451	somatic	0	0.00803518221624217	0.0227524900343018
20	18206822	18354499	2	neutral	AA	100	somatic	0	0.0409380345412897	0.0147800964716943
20	22081466	22083969	1	loss	A	-1	germline	1	0.0832890892270231	0.270079570813542
20	24163962	24181483	2	neutral	AA	100	germline	1	0.00680227292373839	0.0168732234547992
20	26316542	26319045	0	loss	-	-1	germline	1	0.0832669733568889	0.270041161676361
20	26321548	26334063	2	neutral	AA	57.2693	germline	1	0.581301326961454	0.604327140027176
20	26334063	26379117	2	neutral	AA	3.44543	germline	1	0.00780609753766337	0.052589872736311
20	26379117	26381620	4	gain	-	-1	germline	1	0.0832884748330525	0.270078503839212
20	28781997	28787003	8	gain	-	-1	germline	1	0.014309270683021	0.0366383500491068
20	28804524	29262573	8	gain	-	-1	germline	1	1.13189107924682e-12	1.23345778035855e-13
20	29262573	29265076	44	gain	-	-1	germline	1	0.083265130582461	0.270037961094913
20	29265076	29315136	3	gain	-	-1	germline	1	1.68539274868581e-10	1.66222591246878e-12
20	29407747	29410250	6	gain	-	-1	germline	1	0.0832835598134528	0.270069968155407
20	29875808	29893329	7	gain	-	-1	germline	1	0.0027009527492178	0.00495937102310218
20	29893329	30616696	2	neutral	AA	78.0144	somatic	0	0.00326453579674548	0.00669840770687502
20	30616696	30811930	2	neutral	AA	-1	somatic	0	NA	NA
20	30811930	30814433	8	gain	-	-1	germline	1	0.0832755734077149	0.270056098089209
20	30814433	30919559	2	neutral	AA	-1	somatic	0	NA	NA
20	30922062	30939583	2	neutral	AA	-1	somatic	0	NA	NA
20	30939583	30942086	6	gain	-	-1	germline	1	0.0832847885463254	0.270072102057898
20	30942086	30952098	2	neutral	AA	-1	somatic	0	NA	NA
20	30999655	31067236	2	neutral	AA	-1	somatic	0	NA	NA
20	31067236	31074745	44	gain	-	-1	germline	1	0.0143060721602345	0.036631344576239
20	31074745	31162350	2	neutral	AA	-1	somatic	0	NA	NA
20	31164853	31167356	4	gain	-	-1	somatic	0	0.0832854029182685	0.270073169013758
20	31184877	31187380	31	gain	-	-1	germline	1	0.083265130582461	0.270037961094913
20	31187380	31189883	5	gain	-	-1	germline	1	0.0832847885463254	0.270072102057898
20	31189883	31239943	2	neutral	AA	1.00284	somatic	0	0.000140392567692406	0.000511422936379957
20	31239943	31242446	59	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	100	germline	1	0.083265130582461	0.270037961094913
20	31242446	31247452	2	neutral	AA	1.72728	somatic	0	0.0317765753476354	0.0923153000097526
20	33412547	33465110	2	neutral	AA	36.3786	somatic	0	2.10090370202246e-06	1.22103728050771e-06
20	35159641	35254755	2	neutral	AA	46.6189	somatic	0	1.01994772830125e-10	2.106511187705e-08
20	40203186	40215701	2	neutral	AA	54.5678	somatic	0	0.0612455528992753	0.0478173724255451
20	44676047	44681053	1	loss	A	-1	germline	1	0.0143134394016549	0.0366476925029916
21	7916989	7924498	4	gain	-	-1	germline	1	0.00270167703002041	0.00495984521974657
21	8990776	8995782	9	gain	AAAAAABBB	5.6023	germline	1	0.0143080105835956	0.0366354309596373
21	10652768	10655271	4	gain	AAAA	17.6065	germline	1	0.0832854029182685	0.270073169013758
21	10655271	10660277	7	gain	AAAAABB	5.719	germline	1	0.0143109186530575	0.0366401016004678
21	10660277	10680301	5	gain	AAABB	2.21197	germline	1	9.65047777505317e-07	2.25364643280379e-07
21	10682804	10690313	4	gain	AABB	3.77164	germline	1	0.00270181837379489	0.00496002305420318
21	10690313	10695319	29	gain	AAAAAAAAAAAAAAAAABBBBBBBBBBBB	100	germline	1	0.0143060721602345	0.036631344576239
21	10695319	10702828	4	gain	AAAA	5.00701	germline	1	0.00270194205514036	0.00496014161375469
21	10702828	10707834	7	gain	AAAAAAA	1.47664	germline	1	0.0143097553627123	0.0366377662149331
21	10707834	10715343	4	gain	AAAA	1.63809	germline	1	0.00270158869359248	0.00495954884197347
21	10715343	10722852	6	gain	AAAABB	0.811379	germline	1	0.00270151802635041	0.004959489568367
21	10722852	10730361	4	gain	AAAA	2.214	germline	1	0.00270162402784693	0.00495960811622931
21	10730361	10732864	7	gain	AAAAAAA	62.3709	germline	1	0.0832835598134528	0.270069968155407
21	10732864	10737870	4	gain	AAAA	1.60057	germline	1	0.0143130515686869	0.0366421451696519
21	10752888	10755391	11	gain	AAAAAAABBBB	54.3282	germline	1	0.0832669733568889	0.270041161676353
21	15748876	15816457	2	neutral	AA	15.5908	somatic	0	0.0844217848832418	0.213503570277689
21	16962831	17047933	2	neutral	AA	62.8458	somatic	0	0.800955134682026	0.519462202931531
21	17851396	17881432	2	neutral	AA	47.6055	somatic	0	0.239440433883377	0.211531497301358
21	18409565	18442104	2	neutral	AA	100	germline	1	0.234657927938443	0.271804406417901
21	18840081	18865111	2	neutral	AA	100	somatic	0	0.00139355845061187	0.00615356037024251
21	20286815	20289318	1	loss	A	-1	germline	1	0.0833019923484998	0.270101977985037
21	20587175	20589678	1	loss	A	-1	somatic	0	0.0832940045109562	0.270088106718877
21	24942395	24967425	2	neutral	AA	100	somatic	0	0.205195286360949	0.146032073151416
21	30416456	30426468	2	neutral	AA	50.2926	somatic	0	0.883247380621175	0.942714439620679
21	32000855	32045909	2	neutral	AA	5.42377	somatic	0	0.156074827498011	0.224836198867747
21	32298712	32403838	2	neutral	AA	42.1828	somatic	0	0.355577988135222	0.302126083476769
21	33515170	33702895	2	neutral	AA	19.8798	somatic	0	1.81325971699315e-09	3.38624932938458e-06
21	36994340	37004352	2	neutral	AA	100	somatic	0	0.136543720545524	0.45312932133583
21	37284688	37449886	2	neutral	AA	47.8787	somatic	0	1.63557188229613e-06	0.000563444182488437
21	38911638	38916644	2	neutral	AA	100	somatic	0	0.652967755655699	0.971859321748339
21	39229519	39297100	2	neutral	AA	100	somatic	0	5.61284205902496e-07	4.94440717624389e-06
21	41805106	41807609	4	gain	AAAA	17.9212	somatic	0	0.0832921612519461	0.270084905731292
21	42348257	42373287	2	neutral	AA	33.111	somatic	0	0.123305377603243	0.162784410285745
21	43334439	43339445	3	gain	AAB	59.1868	somatic	0	0.0143289603237918	0.0366766089197595
21	43687362	43692368	2	neutral	AA	100	somatic	0	0.6002161770983	0.951527725213946
21	44335639	44485819	2	neutral	AA	100	somatic	0	0.0328906829509465	0.0717856091597937
21	45549594	45554600	1	loss	A	34.4783	somatic	0	0.0244496128646846	0.0681589486919756
21	45554600	45557103	2	neutral	AA	54.6231	somatic	0	0.090900709618919	0.283055629881085
21	45557103	45562109	2	neutral	AA	21.8483	somatic	0	0.0862072163637679	0.154239238183628
21	46445668	46448171	2	neutral	AA	100	somatic	0	0.129141125392801	0.342378672296577
22	11210937	11213440	7	gain	-	-1	germline	1	0.0832817167416776	0.270066767324748
22	17876426	17878929	4	gain	AAAA	2.28215	somatic	0	0.0832958478030092	0.270091307734138
22	20069054	20111605	2	neutral	AA	5.87858	germline	1	0.502619994238299	0.183962192901734
22	31157344	31167356	2	neutral	AA	100	somatic	0	0.138570550383089	0.416557820106257
22	31224925	31310027	2	neutral	AA	32.9696	somatic	0	0.0105006954838267	0.0307410522114141
22	32080951	32100975	2	neutral	AA	45.425	germline	1	0.327104255056226	0.442483269619953
22	36746543	36749046	0	loss	-	-1	germline	1	0.0832725018783963	0.270050763586827
22	43151720	43477110	2	neutral	AA	12.6128	somatic	0	0.0348049830277389	0.0737484578867114
22	45607163	45742325	2	neutral	AA	10.1655	somatic	0	0.00038917339752218	0.00384624087628793
22	48811003	48858560	2	neutral	AA	18.5856	somatic	0	0.00211206058246	0.00315795615897119
22	49747125	49814706	2	neutral	AA	100	somatic	0	0.000598773794820132	0.00412362002404021
22	49814706	49902311	2	neutral	AA	14.6851	somatic	0	0.157262802568402	0.448017540953714
22	50380384	50425438	2	neutral	AA	18.858	somatic	0	0.000250446639679895	0.000330459570090147
X	5136156	5141162	1	loss	A	-1	somatic	0	0.0145063622293536	0.0372088126207836
X	26083763	26088769	1	loss	A	-1	somatic	0	0.0153361704158547	0.0397439078852739
X	30018479	30020982	0	loss	-	-1	somatic	0	0.0832811023917615	0.270065700387357
X	50718289	50765846	2	neutral	AA	100	somatic	0	0.145305260718819	0.415377320740777
X	57696653	57699156	0	loss	-	-1	somatic	0	0.0832768020451391	0.270058231911711
X	58487601	58497613	1	loss	A	-1	somatic	0	0.00271364444449434	0.00498301276923319
X	58507625	62655096	2	neutral	AA	1.69988	germline	1	0.0451476835325926	0.189999945896479
X	63250810	63285852	3	gain	AAB	31.8371	germline	1	2.04786858949963e-07	3.07182214109858e-08
X	85044431	85157066	2	neutral	AA	100	somatic	0	0.285012346198719	0.293241847302919
X	108772871	108775374	0	loss	-	-1	germline	1	0.083265130582461	0.270037961094921
X	111105667	111160733	2	neutral	AA	54.5678	somatic	0	0.556573347201353	0.860142415294069
X	111798998	111844052	2	neutral	AA	27.2839	somatic	0	0.820942915438201	0.439988264136587
X	118186654	118194163	2	neutral	AA	54.5678	somatic	0	0.518205048333392	0.601638482538237
X	119738514	119743520	1	loss	A	-1	somatic	0	0.0143460504833267	0.0367380128623833
X	119896203	120001329	2	neutral	AA	19.0371	somatic	0	5.3022713058116e-09	2.37344832454411e-07
X	123029959	123085025	2	neutral	AA	54.5678	somatic	0	0.717813263723367	0.781592336725863
X	126776950	126779453	0	loss	-	-1	germline	1	0.083265130582461	0.270037961094921
X	133547565	134213363	2	neutral	AA	11.8327	germline	1	1.97725797688519e-05	8.53005777696758e-05
X	134213363	134218369	0	loss	-	-1	germline	1	0.0143062659921454	0.0366319283208806
X	134218369	134528741	2	neutral	AA	13.8289	germline	1	1.48956694887098e-19	1.88737914186277e-15
X	141787441	141794950	1	loss	A	-1	germline	1	0.00274581863966247	0.00508122181241877
X	145156479	145171497	2	neutral	AA	100	somatic	0	0.113474033675262	0.0662541022174317
X	146297847	146342901	2	neutral	AA	36.4826	somatic	0	0.068168513551264	0.120206525922067
X	148427900	148430403	0	loss	-	-1	germline	1	0.0832743447849747	0.270053964279031
X	155558947	155566456	1	loss	A	-1	somatic	0	0.00282940584577109	0.00537470766394399
