chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	819936	904689	2	neutral	AA	2.17728	germline	1	0.545057894804402	0.608168681344109
1	3273831	3305367	2	neutral	AA	10.0642	somatic	0	0.102185429964459	0.16592609198683
1	5670567	5672538	5	gain	AAABB	1.09006	germline	1	0.0832837652135662	0.270070440470564
1	11031687	11043513	2	neutral	AA	7.80274	germline	1	0.0127276369331644	0.0178288697083526
1	15852753	16144461	2	neutral	AA	100	somatic	0	0.0130812769940699	0.00804698753538957
1	16611588	16615530	7	gain	AAAAAAB	20.3295	germline	1	0.0143103581427593	0.0366381410735128
1	16883586	16942716	4	gain	AABB	0.623659	germline	1	1.9798389889056e-11	1.88071780371502e-13
1	20462922	20484603	2	neutral	AA	69.6524	germline	1	0.213827864926127	0.45375136323072
1	20484603	20665935	2	neutral	AA	33.4725	somatic	0	0.0577620355652956	0.00520197671667899
1	31431537	31433508	6	gain	AAAAAA	4.62821	germline	1	0.0832818401612673	0.270067097267839
1	34924149	34926120	2	neutral	AA	100	somatic	0	0.869365809430831	0.925345518877093
1	40880511	40915989	3	gain	AAB	2.36234	germline	1	2.06729722109033e-13	5.55111512312578e-16
1	54458730	54515889	2	neutral	AA	44.3964	somatic	0	0.0311077666445131	0.0243095220142865
1	55663011	55666953	0	loss	-	-1	germline	1	0.0143196254206855	0.0366703968533169
1	56490831	56522367	2	neutral	AA	27.378	somatic	0	0.0482555912896877	0.279825206836765
1	72290367	72298251	1	loss	A	-1	germline	1	0.00099025032646241	0.00151050130491059
1	80893782	80972622	2	neutral	AA	22.4938	somatic	0	0.04538531708608	0.208835520011386
1	91848600	91876194	2	neutral	AA	100	somatic	0	0.444826973784666	0.655939866326877
1	102087945	102129336	2	neutral	AA	100	somatic	0	0.595804762251541	0.75767480444074
1	125067834	125073747	3	gain	-	-1	germline	1	0.00270642169494773	0.00497128391602442
1	125079660	125081631	12	gain	-	-1	germline	1	0.0832736590911151	0.27005288899328
1	125081631	125085573	5	gain	-	-1	germline	1	0.0143140036534213	0.0366434009596103
1	125162442	125166384	6	gain	-	-1	germline	1	0.0143117251132696	0.0366401992111349
1	147198222	147263265	2	neutral	AA	36.3786	somatic	0	0.479551496201728	0.544276520580805
1	150192171	150403068	2	neutral	AA	28.611	somatic	0	5.13680165726574e-13	3.92463839204993e-13
1	152328735	152354358	2	neutral	AA	36.3786	somatic	0	0.0165212508507688	0.145211532493842
1	159075468	159203583	2	neutral	AA	27.2839	somatic	0	2.53165818064332e-05	9.48763770116656e-05
1	168697890	168733368	2	neutral	AA	14.7459	germline	1	0.929477216579763	0.70094516991438
1	169257654	169273422	1	loss	A	-1	germline	1	4.54386212461951e-06	1.14928528693881e-06
1	173002554	173030148	2	neutral	AA	54.5678	somatic	0	0.683597557796643	0.735828291455772
1	189032697	189080001	2	neutral	AA	27.2839	somatic	0	0.348998316810091	0.131792874198479
1	189803358	190004400	2	neutral	AA	34.7846	somatic	0	0.0711603702383525	0.113984476788523
1	205549677	205853211	2	neutral	AA	9.15056	germline	1	0.37832208166429	0.138672064221794
1	224012034	224014005	9	gain	AAAAAAAAA	2.15196	germline	1	0.0832755839902272	0.270056232067616
1	228066381	228072294	1	loss	A	-1	germline	1	0.00389366223992996	0.00957271956207906
1	234775665	234783549	5	gain	AAAAB	3.54379	germline	1	0.000532544299706134	0.000671469869591101
1	236096235	236098206	12	gain	AAAAAAAAABBB	36.2545	germline	1	0.0832736590911151	0.27005288899328
1	240184089	240186060	4	gain	AAAB	100	somatic	0	0.0832905031804711	0.270082141918001
2	3179223	3181194	7	gain	-	-1	germline	1	0.0832794338965814	0.270062918306915
2	3683799	3691683	1	loss	A	-1	somatic	0	0.0016777386127352	0.00187526222976186
2	17403930	17409843	1	loss	A	-1	somatic	0	0.00464458516746416	0.0092299081083218
2	48622599	48630483	1	loss	A	-1	germline	1	0.00122485404430885	0.00164303067528182
2	52521237	52558686	1	loss	A	-1	germline	1	5.73137114212612e-12	2.30926389122033e-14
2	59520258	59530113	1	loss	A	-1	germline	1	0.000290704983132397	0.000256472255298901
2	89773137	89782992	5	gain	-	-1	germline	1	0.000107637660643424	9.08771103130812e-05
2	89782992	89796789	4	gain	-	-1	germline	1	2.21423793361986e-05	1.2316528075984e-05
2	89796789	89812557	5	gain	-	-1	germline	1	4.60140372452502e-06	1.66522050482065e-06
2	89812557	89826354	3	gain	-	-1	germline	1	4.60831138430799e-06	1.67214595536702e-06
2	89826354	89842122	30	gain	-	-1	germline	1	9.6384663544836e-07	2.25194007330565e-07
2	89842122	89851977	4	gain	-	-1	germline	1	0.000107675580356894	9.08969646302715e-05
2	91411038	91414980	4	gain	-	-1	germline	1	0.0143141555674751	0.0366438583722318
2	125684757	125694612	1	loss	A	-1	somatic	0	0.000399395386778545	0.000300140963022666
2	126916632	126920574	1	loss	A	-1	somatic	0	0.0147799826743781	0.038052493145657
2	132242274	132246216	4	gain	-	-1	germline	1	0.014322133052872	0.0366665065418593
2	133988580	133996464	1	loss	A	-1	somatic	0	0.0010797883693044	0.00155939384275416
2	176400558	176408442	1	loss	A	-1	germline	1	0.0203943525084766	0.0554570704148564
2	179203320	179213175	1	loss	A	-1	germline	1	0.000329105030506455	0.000256950039837056
2	193824198	193830111	1	loss	A	-1	somatic	0	0.00564936398675936	0.0091237753079767
2	219187026	219194910	1	loss	A	-1	germline	1	0.00605736912966967	0.0114437493881168
2	227376531	227394270	3	gain	-	-1	germline	1	2.07136001214267e-07	3.18766084639321e-08
2	239190705	239192676	2	neutral	AA	100	somatic	0	0.434708281022082	0.668488625794806
2	239707107	239734701	2	neutral	AA	15.4382	somatic	0	0.215584994693603	0.189791097070056
2	239858874	239894352	2	neutral	AA	100	somatic	0	0.44042717019696	0.533617383280406
2	240430464	240432435	2	neutral	AA	100	somatic	0	0.349901956368196	0.593882740299158
2	240471855	240473826	2	neutral	AA	100	germline	1	0.112206461091371	0.317156689102831
2	241153821	241155792	2	neutral	AA	100	somatic	0	0.14189521745838	0.360468495395949
3	8250606	8280171	2	neutral	AA	60.7905	somatic	0	0.356223756184322	0.676733070479659
3	28496718	28504602	1	loss	A	-1	germline	1	0.00541477616335522	0.00935428842316588
3	32060286	32062257	0	loss	-	-1	germline	1	0.0832664410404477	0.270040352733564
3	53039610	53090856	2	neutral	AA	100	somatic	0	0.135661765627168	0.257056158529211
3	57093957	57147174	2	neutral	AA	67.3515	somatic	0	0.710434473203069	0.759441330843477
3	64339353	64418193	2	neutral	AA	36.3786	somatic	0	0.0039619863932078	0.0286175171980791
3	65516040	65545605	1	loss	A	-1	germline	1	9.58608487344421e-10	3.4780844870852e-11
3	69690618	69722154	2	neutral	AA	54.5678	somatic	0	0.0221240352770982	0.0145717017253869
3	72528858	72558423	2	neutral	AA	69.0159	somatic	0	0.693047257664889	0.768286040553038
3	74633886	74840841	2	neutral	AA	100	somatic	0	0.420860659844919	0.433616359748512
3	77779602	77783544	3	gain	AAB	1.00018	somatic	0	0.0143206892173391	0.0366541514770301
3	84861405	84952071	2	neutral	AA	27.0002	somatic	0	0.495319278712734	0.712694555913121
3	90271800	90508320	2	neutral	AA	0.714383	somatic	0	9.00992642350189e-09	9.83877738280903e-07
3	90667971	90711333	0	loss	-	-1	germline	1	4.85347401547781e-15	6.66133814775094e-16
3	91517472	94040352	2	neutral	AA	23.2304	somatic	0	0.0661539287841605	0.153481099152536
3	98687970	98695854	1	loss	A	-1	germline	1	0.00143367460422362	0.00367866428148766
3	99224082	99229995	1	loss	A	-1	somatic	0	0.00502991485996772	0.00971421120756732
3	102028815	102082032	2	neutral	AA	42.7872	somatic	0	0.0994069115432127	0.0725125539644006
3	144381663	144415170	2	neutral	AA	36.3786	somatic	0	0.800604639245142	0.863275785642009
3	162794745	162909063	1	loss	A	-1	somatic	0	3.68249906393029e-30	0
3	163701405	163719144	3	gain	AAB	7.35401	germline	1	2.04628478406002e-07	3.06113290271526e-08
3	166001562	166044924	2	neutral	AA	100	somatic	0	0.735478787465423	0.657814511487925
3	178757874	178761816	1	loss	A	-1	somatic	0	0.0207235752044171	0.0565012641715207
3	179680302	179721693	2	neutral	AA	21.8273	somatic	0	0.902001307021227	0.819952424829026
3	191346651	191354535	1	loss	A	-1	germline	1	0.00132118711153392	0.00157274011749786
3	195178275	195268941	2	neutral	AA	26.4383	somatic	0	0.512304441619597	0.353800600132575
3	197383824	197389737	3	gain	AAB	3.03088	somatic	0	0.00270766955979256	0.00497165619658824
3	197760285	197801676	2	neutral	AA	50.5147	somatic	0	0.0518466399720787	0.0498975428482111
4	126144	135999	1	loss	A	-1	somatic	0	0.000496989486917662	0.000296075771446636
4	1523583	1570887	2	neutral	AA	32.6541	somatic	0	0.789298895110462	0.738246694488467
4	7862319	7864290	5	gain	AAABB	9.00132	germline	1	0.0832837652135662	0.270070440470564
4	10647342	10700559	2	neutral	AA	18.2394	somatic	0	0.586261539744538	0.784819980977295
4	12149244	12161070	1	loss	A	-1	somatic	0	0.00051752860530744	0.000371194283861676
4	12712950	12716892	1	loss	A	-1	somatic	0	0.0204435210936759	0.0555958334671379
4	13556538	13574277	2	neutral	AA	63.1104	somatic	0	0.253101295079024	0.335248424829363
4	24838542	24883875	2	neutral	AA	30.0555	somatic	0	0.0122580970153976	0.0278650294153878
4	29647782	29730564	2	neutral	AA	91.7267	somatic	0	0.355496263749918	0.228060434467166
4	32828976	32840802	1	loss	A	-1	germline	1	0.00554204846595349	0.00992659491414782
4	38586267	38860236	2	neutral	AA	15.8218	germline	1	0.479808645015066	0.114211300881476
4	40293153	40297095	3	gain	AAB	8.29564	germline	1	0.0143174980364964	0.0366502626734982
4	46200240	46204182	1	loss	A	-1	somatic	0	0.0195283384212054	0.0527236576736388
4	49089726	49091697	9	gain	AAAAAABBB	100	somatic	0	0.0832755839902272	0.270056232067616
4	51815619	51837300	2	neutral	AA	100	somatic	0	0.0841607872769247	0.256920933088684
4	56193210	56218833	2	neutral	AA	100	somatic	0	0.281357935432748	0.438398199081874
4	62803944	62809857	1	loss	A	-1	germline	1	0.00419304574916692	0.00773310652093973
4	63269100	63288810	1	loss	A	-1	germline	1	2.66627986916769e-07	3.15746797596717e-08
4	63828864	63850545	1	loss	A	-1	germline	1	7.87898485764245e-07	1.52981805223718e-07
4	69296418	69365403	1	loss	A	-1	germline	1	1.23826188496684e-08	9.69618052515386e-10
4	70952058	71160984	2	neutral	AA	36.0568	somatic	0	0.0276266937242506	0.00916078318239555
4	72556452	72578133	2	neutral	AA	54.5678	germline	1	0.445728209597821	0.437698151102909
4	74560959	74562930	0	loss	-	-1	somatic	0	0.0832751027620701	0.270055396296194
4	106134408	106142292	1	loss	A	-1	somatic	0	0.0015186382895728	0.00158920690380271
4	114469767	114576201	2	neutral	AA	30.8235	somatic	0	0.734082658854149	0.365834273459592
4	118202841	118208754	1	loss	A	-1	somatic	0	0.00454588890270067	0.00963489045786592
4	141308874	141312816	1	loss	A	-1	germline	1	0.0166015591771389	0.0435822307869222
4	147212019	147533292	2	neutral	AA	24.445	somatic	0	0.00470870367089473	0.0039268897569501
4	154201185	154209069	2	neutral	AA	100	somatic	0	0.580381219502699	0.3090465755963
4	160957773	160963686	1	loss	A	-1	somatic	0	0.00494852415517071	0.00828019873752506
4	165081105	165085047	1	loss	A	-1	germline	1	0.0205026806654627	0.0558017377064867
4	165416175	165457566	2	neutral	AA	54.5678	somatic	0	0.797146613195731	0.634937349519374
4	169358175	169456725	2	neutral	AA	23.3378	somatic	0	0.0343671010996986	0.0446501521941701
5	756864	764748	3	gain	-	-1	germline	1	0.000533117083290842	0.000671931020357008
5	12809529	12821355	1	loss	A	-1	germline	1	8.45649860079235e-05	4.66459388510643e-05
5	45003843	45015669	1	loss	A	-1	germline	1	9.95575291113039e-05	4.63585684229439e-05
5	60702858	60708771	1	loss	A	-1	somatic	0	0.00770204518085281	0.0201359086787074
5	86818608	86822550	1	loss	A	-1	germline	1	0.0146448915640612	0.0376400917659657
5	100990098	100996011	1	loss	A	-1	somatic	0	0.00491894640358084	0.010682807896076
5	110023191	110044872	1	loss	A	-1	germline	1	1.18946122500336e-07	6.24198082110894e-09
5	118051074	118056987	1	loss	A	-1	germline	1	0.00384901354127871	0.00783233089349455
5	118537911	118545795	1	loss	A	-1	somatic	0	0.00541618190042531	0.0108526997598969
5	120043755	120049668	1	loss	A	-1	somatic	0	0.00754309291305008	0.00949394342982224
5	137516670	137520612	1	loss	A	-1	germline	1	0.0209190867129053	0.0571212009629497
5	139674915	139680828	2	neutral	AA	100	somatic	0	0.747590504651684	0.994887844958023
5	141498090	141634089	2	neutral	AA	50.5523	somatic	0	0.116403070836436	0.046591284195447
5	142700400	142745733	2	neutral	AA	36.3786	somatic	0	0.481799766612879	0.222019328341535
5	143096571	143114310	2	neutral	AA	27.2839	somatic	0	0.639663953371884	0.654386292469909
5	144935514	144939456	2	neutral	AA	100	somatic	0	0.0465424419747796	0.122255116171818
5	145739682	145743624	1	loss	A	-1	somatic	0	0.0226536007237036	0.0626315101477551
5	146567502	146601009	2	neutral	AA	36.3787	germline	1	0.00490926225403612	0.0418432959560934
5	149951709	149959593	2	neutral	AA	54.5678	somatic	0	0.375478944596338	0.704865821080956
5	152131635	152139519	1	loss	A	-1	somatic	0	0.00415860411948207	0.00620317780620472
5	159820506	159836274	2	neutral	AA	36.3792	somatic	0	0.479247647280706	0.745302200334596
5	160072794	160116156	2	neutral	AA	15.5923	somatic	0	0.00909400866886222	0.0222303810219733
5	161631855	161645652	2	neutral	AA	54.5678	somatic	0	0.745106066691903	0.793413799658201
5	164499660	164529225	2	neutral	AA	36.3786	somatic	0	0.928990396721994	0.956845001005788
5	166821498	166860918	2	neutral	AA	17.8807	somatic	0	0.378874264136881	0.36657780009509
5	172316646	172350153	2	neutral	AA	18.3073	germline	1	0.0226630761447793	0.0164429494465875
5	174352689	174382254	2	neutral	AA	100	somatic	0	0.7696493888654	0.821975351206579
5	174443355	174559644	2	neutral	AA	10.905	germline	1	0.0242103502730007	0.0645170885599505
5	176475456	176499108	2	neutral	AA	100	somatic	0	0.0375302059635565	0.0779661720646359
5	178584426	178586397	4	gain	AAAA	10.3411	germline	1	0.0832905031804711	0.270082141918001
5	178586397	178608078	2	neutral	AA	100	somatic	0	0.630333622663766	0.55534815799899
5	178681005	178686918	1	loss	A	-1	somatic	0	0.00542552279032374	0.00977902445827228
5	180949626	181002843	1	loss	A	-1	germline	1	3.17599414593949e-17	0
6	256230	382374	4	gain	AABB	0.554664	germline	1	2.42659695123375e-42	0
6	4395330	4442634	2	neutral	AA	100	somatic	0	0.0103833240311173	0.012389485434212
6	19041831	19049715	1	loss	A	-1	germline	1	0.00114999183615907	0.00141969712005885
6	20959614	20961585	5	gain	AAABB	48.8978	somatic	0	0.0832900218824771	0.270081306088054
6	23851071	23904288	2	neutral	AA	100	germline	1	0.0880471370846832	0.114223416546326
6	32489964	32529384	0	loss	-	-1	germline	1	4.30098216538564e-12	2.67563748934663e-14
6	32555007	32667354	1	loss	A	-1	germline	1	1.98779659926949e-12	3.39728245535298e-14
6	34636383	34723107	2	neutral	AA	21.8271	somatic	0	0.000633813278134279	0.00268411885577835
6	35787447	35799273	3	gain	AAB	6.9043	germline	1	2.27664288337586e-05	1.29627178313552e-05
6	41385087	41416623	2	neutral	AA	36.3786	somatic	0	0.844829070074508	0.98266099662001
6	60235731	60241644	4	gain	-	-1	germline	1	0.00270215519940267	0.00496087042888116
6	61473519	61479432	4	gain	AAAB	10.904	germline	1	0.0143155228579603	0.0366466029528714
6	63211941	63265158	2	neutral	AA	34.3165	somatic	0	0.0851675477513144	0.101703104696938
6	73435518	73437489	5	gain	AAABB	32.8496	somatic	0	0.0832895405867358	0.270080470259996
6	73999224	74007108	3	gain	AAB	7.40248	germline	1	0.000533328676471269	0.00067214073247901
6	76729059	76742856	1	loss	A	-1	germline	1	0.000248722522664169	0.000187237996904233
6	78388641	78412293	2	neutral	AA	100	somatic	0	0.0997791136461855	0.105036589712384
6	85253634	85322619	2	neutral	AA	100	somatic	0	0.107997001890736	0.257585560001682
6	95307705	95317560	1	loss	A	-1	germline	1	0.000360343528045216	0.000272377493015008
6	97101315	97126938	2	neutral	AA	100	somatic	0	0.757194014817583	0.9685257560663
6	103290255	103315878	1	loss	A	-1	germline	1	2.6563906330599e-08	1.12818987485497e-09
6	118644345	118646316	5	gain	AAAAA	8.13658	germline	1	0.0832861715796284	0.270074619516452
6	124111899	124149348	3	gain	AAB	3.05532	germline	1	4.61491954461755e-14	1.11022302462516e-16
6	129398121	129413889	2	neutral	AA	100	somatic	0	0.9912691898981	0.753141048667171
6	138935790	139142745	2	neutral	AA	71.6559	somatic	0	0.0948387131676327	0.0789698401528661
6	155515842	155533581	2	neutral	AA	36.3786	somatic	0	0.480280189798752	0.681964024868814
6	157309452	157311423	12	gain	AAAAAAAABBBB	68.4061	germline	1	0.0832736590911151	0.27005288899328
6	157313394	157315365	6	gain	AAAABB	3.53262	germline	1	0.0832823214209628	0.270067933065688
6	157877100	157914549	2	neutral	AA	54.5678	somatic	0	0.78839808741456	0.575023805815961
6	164775600	164781513	1	loss	A	-1	germline	1	0.00387501216486222	0.00722997679506543
7	9760392	9766305	1	loss	A	-1	somatic	0	0.00402874232704333	0.00944779594293133
7	52663149	52676946	3	gain	-	-1	germline	1	4.61728137931786e-06	1.6704667237244e-06
7	57486186	57494070	3	gain	-	-1	germline	1	0.000532943046296525	0.000671813608364324
7	58061718	58067631	3	gain	-	-1	somatic	0	0.00270348435648048	0.00496249621708733
7	61045812	61053696	3	gain	-	-1	somatic	0	0.000532977849459593	0.00067191424603763
7	61097058	62297397	2	neutral	AA	1.0664	somatic	0	4.290617611039e-09	3.65577791372473e-08
7	62297397	62348643	3	gain	AAB	0.541724	germline	1	4.62089801602922e-11	1.62766133904313e-10
7	62348643	62378208	2	neutral	AA	1.86234	somatic	0	0.0165714238817267	0.0872051527132727
7	62401860	62405802	4	gain	-	-1	germline	1	0.0143142315250354	0.0366438583722318
7	62437338	62455077	3	gain	AAB	3.01839	germline	1	1.88749777202363e-06	3.73388469732117e-06
7	62518149	62541801	2	neutral	AA	4.10418	germline	1	0.903662251259292	0.966971619255736
7	62541801	62545743	1	loss	A	-1	germline	1	0.0208085257470409	0.0567708726846332
7	62545743	62571366	2	neutral	AA	5.39735	somatic	0	0.154603093940393	0.297821292949899
7	65488446	65490417	4	gain	AAAB	33.326	somatic	0	0.0832953162843241	0.270090500321313
7	67019913	67414113	2	neutral	AA	4.6407	somatic	0	0.250478758438431	0.339619966249765
7	67887153	67914747	2	neutral	AA	39.2027	somatic	0	0.476505049137844	0.304590472398993
7	69586155	69615720	2	neutral	AA	100	somatic	0	0.444753738934088	0.824865458942679
7	80978535	80990361	2	neutral	AA	27.2839	somatic	0	0.246374678140071	0.550335299833225
7	85367952	85519719	2	neutral	AA	97.621	somatic	0	0.111754298393964	0.263619461374646
7	98906751	98916606	2	neutral	AA	19.0748	somatic	0	0.130825257697836	0.330241202818728
7	100948707	100956591	3	gain	AAB	3.99607	germline	1	0.000533200104199409	0.000672593920090336
7	100956591	100960533	11	gain	AAAAAAABBBB	5.81855	germline	1	0.0143092950231016	0.0366372263781491
7	100960533	100976301	3	gain	AAB	0.828255	germline	1	1.29186107006889e-06	9.72056166115287e-07
7	101672064	101701629	2	neutral	AA	55.0872	somatic	0	0.015656220945988	0.0614760613706257
7	108740070	108840591	2	neutral	AA	27.2246	somatic	0	0.00593500683007708	0.00661604736792398
7	109802439	109814265	1	loss	A	-1	germline	1	7.81168814164181e-05	4.34667133868416e-05
7	115478919	115729236	2	neutral	AA	22.3738	somatic	0	0.0044980550207345	0.0708641022858529
7	116290971	116300826	1	loss	A	-1	germline	1	0.000290794018369314	0.000264428914818038
7	116604360	116700939	2	neutral	AA	18.1893	somatic	0	0.309246508763459	0.499301882632728
7	126406143	126414027	1	loss	A	-1	germline	1	0.809499502973127	0.70329837477083
7	132987312	133010964	2	neutral	AA	100	somatic	0	0.844425262774137	0.961309125020408
7	133125282	133154847	2	neutral	AA	36.3786	somatic	0	0.83570194208878	0.6346390897796
7	143847522	143849493	4	gain	AAAB	100	germline	1	0.0832933910157474	0.270087156937331
7	147935376	147982680	2	neutral	AA	100	somatic	0	0.253170008007969	0.287432065002217
7	152387865	152401662	2	neutral	AA	21.1643	somatic	0	0.480527870515409	0.630957175395737
7	152401662	152407575	14	gain	AAAAAAAAABBBBB	10.7206	germline	1	0.00270054993128786	0.00495836302766473
7	152870760	152886528	2	neutral	AA	6.16968	somatic	0	0.547833772106494	0.7178567144478
7	158151069	158153040	4	gain	AABB	16.1817	germline	1	0.0832938723295122	0.270087992780494
7	158594544	158596515	5	gain	AAABB	16.472	germline	1	0.0832837652135662	0.270070440470564
7	158596515	158610312	2	neutral	AA	100	somatic	0	0.423673973255568	0.42451254238125
8	644517	650430	1	loss	A	-1	somatic	0	0.00701718026356895	0.0105110903331292
8	3017601	3041253	2	neutral	AA	36.3786	somatic	0	0.786645789655505	0.725292445394418
8	15361974	15381684	2	neutral	AA	36.3786	somatic	0	0.844123590894929	0.725063405588401
8	18690993	18712674	2	neutral	AA	55.6514	somatic	0	0.833302044350028	0.625938229105156
8	23316930	23344524	2	neutral	AA	36.3786	somatic	0	0.463087941547512	0.481296529115059
8	25209090	25213032	1	loss	A	-1	germline	1	0.0167966773219286	0.0428553939984475
8	25723521	25729434	3	gain	AAB	4.37523	germline	1	0.00270473098378064	0.00496426191154475
8	26241894	26243865	1	loss	A	-1	somatic	0	0.125387218723846	0.33690573264297
8	31589217	31947939	2	neutral	AA	36.3548	somatic	0	0.00497719521325025	0.0300388344800172
8	40324689	40332573	0	loss	-	-1	germline	1	0.0143136238745086	0.0366520926537197
8	40915989	40921902	1	loss	A	-1	germline	1	0.00650214461288776	0.00952109031358983
8	43235856	43237827	3	gain	AAB	100	germline	1	0.0833150523657003	0.270124771748922
8	43237827	43241769	9	gain	AAAAAABBB	1.18164	germline	1	0.0143099025115175	0.0366372263781491
8	63050319	63068058	2	neutral	AA	54.5678	somatic	0	0.395907671206666	0.686774330101845
8	64510830	64542366	2	neutral	AA	15.8531	somatic	0	0.200023251008323	0.330644620329619
8	67412142	67477185	2	neutral	AA	21.8278	somatic	0	0.342305379009615	0.353652892135232
8	73772559	73806066	2	neutral	AA	27.2839	somatic	0	0.0464668372799242	0.0552931998305707
8	77923485	78041745	2	neutral	AA	18.4051	somatic	0	0.513143626896069	0.11200173698827
8	86176062	86181975	1	loss	A	-1	germline	1	0.00520276091915252	0.0090542261090838
8	95863527	95867469	1	loss	A	-1	germline	1	0.0181107885261941	0.0450683788840605
8	100702332	100794969	2	neutral	AA	3.96034	germline	1	0.13046225749142	0.0697443532433116
8	104545782	104549724	1	loss	A	-1	germline	1	0.0215560440667952	0.053771926776922
8	110563245	110596752	2	neutral	AA	54.5678	somatic	0	0.275668271312614	0.588873168994323
8	114420492	114426405	1	loss	A	-1	germline	1	0.00466228847621269	0.00819769030323203
8	119141037	119148921	1	loss	A	-1	germline	1	0.00141453102200651	0.0016080870176105
8	120918879	120920850	0	loss	-	-1	somatic	0	0.0832765464532993	0.270057903616106
8	128042073	128101203	2	neutral	AA	21.8272	somatic	0	0.0776371623304816	0.227779651892432
8	144125433	144127404	7	gain	AAAAABB	11.621	germline	1	0.0832784714064764	0.270061246735762
9	23362263	23378031	1	loss	A	-1	germline	1	6.68632813565718e-06	1.25122308969328e-06
9	40912047	40929786	6	gain	-	-1	germline	1	2.21132149847012e-05	1.22983229720042e-05
9	42457311	42459282	1	loss	A	-1	germline	1	0.0840472270037753	0.271394207597477
9	61668648	61672590	2	neutral	AA	12.7331	somatic	0	0.27661169769969	0.429985814291822
9	69107202	69128883	2	neutral	AA	27.284	somatic	0	0.0725981414635195	0.134895322446558
9	71872515	71982891	2	neutral	AA	100	somatic	0	0.113327870976894	0.387908683968826
9	79060752	79088346	2	neutral	AA	54.5678	somatic	0	0.620058826549986	0.667420856881711
9	80229555	80247294	2	neutral	AA	36.3786	germline	1	0.207009055807282	0.188278171361742
9	81725544	81741312	2	neutral	AA	100	somatic	0	0.491021125030058	0.164271354476424
9	82247859	82490292	2	neutral	AA	18.9493	somatic	0	0.000296718747150026	0.00215695317926978
9	85287141	85399488	2	neutral	AA	13.8912	somatic	0	0.000840520638306019	0.004162732825438
9	88302771	88419060	2	neutral	AA	16.3457	somatic	0	6.56380731927954e-05	0.000862190020694764
9	101951946	101961801	1	loss	A	-1	germline	1	0.000354328331303244	0.00026537809328675
9	103012344	103016286	1	loss	A	-1	germline	1	0.0146875340425875	0.0376780384966693
9	103217328	103235067	2	neutral	AA	100	somatic	0	0.148090662750553	0.153670138700186
9	110261682	110267595	1	loss	A	-1	germline	1	0.0046234441187814	0.00915182786267565
9	112520448	112551984	2	neutral	AA	100	somatic	0	0.0681174381921098	0.0744109489342513
9	112833837	112867344	2	neutral	AA	81.6492	somatic	0	0.60587753770612	0.974993321125453
9	121943799	121991103	2	neutral	AA	27.2839	somatic	0	0.0364350448920452	0.01727558396865
9	129423744	129441483	3	gain	AAB	0.364615	germline	1	2.09596620666723e-07	3.38329144700111e-08
9	131382918	131741640	2	neutral	AA	22.5126	germline	1	0.0696495168723677	0.0687538736448694
9	131741640	131747553	3	gain	AAB	47.8879	somatic	0	0.00270371979029923	0.00496328606185403
9	131747553	132112188	2	neutral	AA	7.65582	germline	1	0.00197071200562256	0.0206525516755418
9	135395874	135417555	2	neutral	AA	13.6428	germline	1	0.141673185387601	0.301909695981541
9	136767690	136781487	1	loss	A	-1	germline	1	2.73910789113586e-05	2.993154880504e-05
9	137327454	137329425	9	gain	AAAAAABBB	4.6627	somatic	0	0.0832755839902272	0.270056232067616
9	137355048	137357019	4	gain	AAAB	100	somatic	0	0.0832933910157474	0.270087156937331
9	138086289	138121767	2	neutral	AA	12.1855	somatic	0	0.929475444533612	0.973117891421514
10	1618191	1661553	2	neutral	AA	19.5556	germline	1	0.0131191799619368	0.00235407239023888
10	4247505	4249476	0	loss	-	-1	somatic	0	0.083269328199894	0.27004536718647
10	8268345	8270316	0	loss	-	-1	somatic	0	0.0832784714064764	0.270061246735755
10	12052665	12092085	2	neutral	AA	34.1841	somatic	0	0.00027069480744637	0.000159498542301018
10	12866688	12902166	2	neutral	AA	40.0193	somatic	0	0.57751879147841	0.80602912512764
10	14796297	14804181	2	neutral	AA	100	somatic	0	0.998781586275922	0.809350757545691
10	16201620	16223301	2	neutral	AA	54.5678	somatic	0	0.590169058871495	0.984372996523395
10	17204859	17254134	2	neutral	AA	100	somatic	0	0.771625525958331	0.913377920547223
10	20561472	20567385	1	loss	A	-1	germline	1	0.00344409608145365	0.00604263087308921
10	21552885	21576537	2	neutral	AA	36.3786	somatic	0	0.0778709771621455	0.121823959307126
10	21842622	21870216	2	neutral	AA	36.3786	somatic	0	0.136524480610649	0.101880081749181
10	25455465	25479117	2	neutral	AA	73.0415	somatic	0	0.87643578799757	0.882993229266293
10	26571051	26657775	2	neutral	AA	0.53043	germline	1	0.060502872929585	0.0372896173047286
10	28829817	28839672	2	neutral	AA	100	somatic	0	0.0740255525482933	0.0714637817946348
10	29046627	29086047	2	neutral	AA	54.5678	somatic	0	0.695812326919526	0.160146233956154
10	29188539	29202336	2	neutral	AA	100	somatic	0	0.269227474876602	0.161033331553242
10	35594289	35669187	2	neutral	AA	8.43551	somatic	0	0.622652616787686	0.597299367933196
10	35811099	35828838	2	neutral	AA	36.3786	somatic	0	0.303735016859066	0.481349767979811
10	36820251	36826164	2	neutral	AA	100	somatic	0	0.566263387334434	0.887385025547689
10	38483775	38493630	3	gain	AAB	3.97418	germline	1	0.000107793158114768	9.10531062847664e-05
10	38493630	38525166	3	gain	AAB	0.688565	germline	1	4.25645658028415e-11	1.04886099805412e-11
10	38525166	38527137	5	gain	AAAAA	1.46111	germline	1	0.0832905031804711	0.270082141918001
10	38527137	38529108	16	gain	AAAAAAAAAAAAAAAB	3.60076	germline	1	0.083271734228046	0.270049545949153
10	38574441	38578383	3	gain	AAB	27.5605	germline	1	0.0145033194238196	0.0371620853532166
10	38578383	38582325	4	gain	AAAB	25.9787	germline	1	0.0143152190056745	0.0366475178530515
10	38814903	38836584	3	gain	AAB	0.926903	germline	1	9.25959088763047e-09	5.60456125953124e-10
10	39557970	39559941	0	loss	-	-1	somatic	0	0.0832784714064764	0.270061246735755
10	41828562	41842359	2	neutral	AA	2.85882	germline	1	0.438979554663146	0.570418311809775
10	41858127	41911344	34	gain	AAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBB	17.7628	germline	1	9.22199109422949e-09	5.58343926648774e-10
10	42299631	42321312	3	gain	AAA	1.46641	germline	1	2.89258020961012e-08	3.14193536743446e-08
10	46011024	46103661	2	neutral	AA	21.9332	somatic	0	0.0783749973069879	0.0810166332332229
10	46515600	46560933	4	gain	AABB	0.46808	germline	1	2.0809358667204e-15	0
10	52753815	52915437	2	neutral	AA	18.8263	somatic	0	0.00539316982157767	0.0157002165329698
10	55822662	55869966	2	neutral	AA	37.1279	somatic	0	0.461412948684265	0.786677042089497
10	62183079	62299368	2	neutral	AA	100	somatic	0	0.00198085172751357	0.00028326559237557
10	66515337	66546873	2	neutral	AA	54.6804	somatic	0	0.783240824438729	0.860835066690774
10	67697937	67725531	2	neutral	AA	100	somatic	0	0.202619560819623	0.48142818447235
10	67725531	67729473	1	loss	A	-1	germline	1	0.02082403264823	0.0568076621828196
10	67729473	67776777	2	neutral	AA	100	somatic	0	0.387441486721145	0.627195493719615
10	70364700	70376526	2	neutral	AA	54.5678	somatic	0	0.0594979242837568	0.0957057323799025
10	70689915	70691886	0	loss	-	-1	germline	1	0.0832702906043969	0.270047038685877
10	70691886	70709625	2	neutral	AA	100	germline	1	0.5013969871097	0.662491147103906
10	78717798	78727653	2	neutral	AA	100	somatic	0	0.423268644125448	0.4020607890333
10	81317547	81339228	2	neutral	AA	36.3786	somatic	0	0.907895866384229	0.994666165996263
10	85399488	85425111	2	neutral	AA	100	somatic	0	0.0477894972337948	0.0511212155969111
10	94458204	94594203	2	neutral	AA	34.9616	somatic	0	0.000114830810543642	0.000915587935395035
10	101748933	101758788	2	neutral	AA	54.5678	somatic	0	0.381168701860662	0.379050541313395
10	103999815	104041206	2	neutral	AA	10.7108	somatic	0	0.777651891665795	0.632589700376893
10	105296733	105302646	1	loss	A	-1	somatic	0	0.0043358104648391	0.00777074062036687
10	106270407	106272378	0	loss	-	-1	somatic	0	0.0832659598550907	0.270039516998021
10	120467520	120469491	0	loss	-	-1	germline	1	0.0832664410404477	0.270040352733564
10	128463867	128465838	8	gain	AAAAAAAA	100	germline	1	0.0832784714064764	0.270061246735762
10	131621409	131625351	1	loss	A	-1	somatic	0	0.0207193723965673	0.0564243880970587
10	131808654	131993928	2	neutral	AA	15.5482	somatic	0	0.200155119473459	0.342223845776289
10	132362505	132364476	5	gain	AAAAA	36.0722	germline	1	0.0832837652135662	0.270070440470564
10	132364476	132366447	3	gain	AAB	38.006	germline	1	0.0833092755595899	0.270114740758648
10	133109514	133113456	4	gain	AAAA	5.9699	germline	1	0.0143165104171807	0.0366479753106358
10	133131195	133166673	2	neutral	AA	100	somatic	0	0.0081057919137277	0.0377917036679003
11	3163455	3175281	2	neutral	AA	54.5678	somatic	0	0.199311152209462	0.32770647900788
11	9374076	9478539	2	neutral	AA	44.5368	somatic	0	7.38730728186208e-09	5.15128828482148e-08
11	11453481	11563857	2	neutral	AA	36.1695	somatic	0	3.05753554237272e-06	0.00010318369887008
11	28985526	28991439	1	loss	A	-1	somatic	0	0.00531337538764203	0.00921895042916432
11	34403805	34488558	2	neutral	AA	20.9193	somatic	0	0.764495982654232	0.118534621913567
11	34488558	34510239	2	neutral	AA	100	somatic	0	0.639067976052699	0.867092188777504
11	40218255	40234023	2	neutral	AA	27.2846	somatic	0	0.0767621656303381	0.201008068159791
11	42792381	42796323	1	loss	A	-1	somatic	0	0.0206619211120335	0.0516200035389515
11	42946119	42950061	3	gain	AAB	12.2053	somatic	0	0.0143247930860456	0.0366651335769709
11	46212066	46283022	2	neutral	AA	100	somatic	0	0.740057069710503	0.172871291715239
11	47199537	47621331	2	neutral	AA	15.1607	somatic	0	1.35548420903945e-05	4.71087661358949e-05
11	48788163	48790134	1	loss	A	-1	somatic	0	0.0833039804390182	0.270105545923074
11	50735511	50741424	1	loss	A	-1	germline	1	0.0233451945597729	0.0498379250381475
11	54756351	54778032	1	loss	A	-1	germline	1	8.02246724814206e-07	1.27589553478025e-07
11	54921915	54933741	1	loss	A	-1	germline	1	8.0714998349684e-05	4.36078208582158e-05
11	55117044	55122957	1	loss	A	-1	germline	1	0.00441491535162736	0.00746125263620978
11	55189971	55205739	1	loss	A	-1	germline	1	9.40492620494057e-05	4.1995109860915e-05
11	58863915	58869828	1	loss	A	-1	somatic	0	0.00575622588240643	0.0096013424059761
11	63424809	63430722	3	gain	AAB	6.14675	germline	1	0.00270524363845581	0.00496491257570897
11	69053985	69292476	2	neutral	AA	12.3095	germline	1	1.55203523131622e-08	1.54378169114899e-06
11	70370613	70372584	3	gain	AAB	23.5731	germline	1	0.0833030177191142	0.27010387415934
11	77535198	77793399	2	neutral	AA	10.1084	somatic	0	0.000406937961261525	0.00060661558126085
11	117733743	118015596	2	neutral	AA	39.3777	somatic	0	0.00062444468171536	0.00258984479133206
11	128655054	128753604	2	neutral	AA	12.127	somatic	0	0.00587968693858822	0.0499667384952698
12	2254824	2256795	7	gain	AAAAABB	20.3595	germline	1	0.0832794338965814	0.270062918306915
12	2718009	2773197	2	neutral	AA	1.68137	somatic	0	0.000588232959671388	0.000359196920842964
12	3005775	3055050	2	neutral	AA	100	somatic	0	0.272708261711341	0.33998625246728
12	9072513	10022535	2	neutral	AA	3.27769	somatic	0	0.194962740161182	0.0416214395836808
12	11686059	11717595	2	neutral	AA	29.0499	somatic	0	0.815390545065302	0.682031050058295
12	18095751	18101664	1	loss	A	-1	somatic	0	0.00548833921310561	0.010658082525617
12	20857122	20880774	2	neutral	AA	36.3786	somatic	0	0.494165401941762	0.634440428803881
12	28806165	28841643	2	neutral	AA	35.0926	somatic	0	0.31147050698185	0.412949572351173
12	32897961	32915700	2	neutral	AA	36.3786	somatic	0	0.132816483909902	0.219552248022147
12	33148278	33154191	1	loss	A	-1	somatic	0	0.00353280075067751	0.00631727386544878
12	34677774	34695513	2	neutral	AA	2.66286	somatic	0	0.272351388573113	0.291067114321889
12	37340595	37342566	4	gain	-	-1	germline	1	0.0832933910157474	0.270087156937331
12	37616535	37624419	1	loss	A	-1	germline	1	0.00127253613644604	0.00150916128270595
12	42626817	42634701	1	loss	A	-1	somatic	0	0.00156137104008853	0.00163314289907701
12	43811388	43921764	2	neutral	AA	34.3783	somatic	0	0.127205381585363	0.137412688329283
12	49144914	49233609	2	neutral	AA	21.1981	germline	1	1.77961960949091e-06	7.18278848266252e-06
12	71568981	71677386	2	neutral	AA	54.5678	somatic	0	0.744331668397514	0.429203944361055
12	79074549	79246026	2	neutral	AA	100	somatic	0	0.217813210742264	0.348549659108036
12	79760457	79768341	3	gain	-	-1	somatic	0	0.000533786950004193	0.000672803826163415
12	97935048	97990236	2	neutral	AA	100	somatic	0	0.0434601991414927	0.0213577217038367
12	99399501	99409356	1	loss	A	-1	germline	1	0.000328848665280043	0.000269647627143432
12	110350377	110393739	2	neutral	AA	17.3167	somatic	0	0.00137960555374836	0.00700899248245301
12	113243805	113298993	2	neutral	AA	90.5203	somatic	0	0.0603241571771627	0.148176844003897
12	113298993	113306877	3	gain	-	-1	germline	1	0.00053315725319403	0.000671989733567191
12	113306877	113490180	2	neutral	AA	22.4375	somatic	0	0.217049497551296	0.0728524505569061
12	122744025	122785416	2	neutral	AA	100	somatic	0	0.00629639165944288	0.0302150920935179
12	128739807	128781198	3	gain	AAB	1.11294	germline	1	2.10016090662189e-15	0
12	129124152	129128094	2	neutral	AA	100	somatic	0	0.267980388852719	0.248991002097222
12	131649003	131652945	1	loss	A	-1	somatic	0	0.0166192657564525	0.0418847852012385
13	22020012	22023954	0	loss	-	-1	germline	1	0.0143183337613194	0.0366665065418577
13	23752521	23815593	2	neutral	AA	27.2936	somatic	0	0.54282727453031	0.391146510664325
13	25236684	25282017	2	neutral	AA	27.2839	somatic	0	0.178700841434743	0.056011055416568
13	25429842	25457436	2	neutral	AA	28.8142	somatic	0	0.150663645570806	0.119438641092562
13	29097873	29103786	2	neutral	AA	100	germline	1	0.145357036362788	0.315869985751178
13	34987221	34993134	1	loss	A	-1	somatic	0	0.00781847167908591	0.0126916621909862
13	36035793	36112662	2	neutral	AA	54.5678	somatic	0	0.0798850440400901	0.161313239582393
13	38481804	38485746	1	loss	A	-1	somatic	0	0.0209892704390022	0.0560545828476045
13	48835467	48865032	2	neutral	AA	100	somatic	0	0.992408985505997	0.989654675403241
13	48957669	48963582	1	loss	A	100	somatic	0	0.00599198363855906	0.0103398786414942
13	50495049	50500962	1	loss	A	-1	germline	1	0.00370981669046591	0.00660646910850393
13	51715098	52716366	2	neutral	AA	9.36508	somatic	0	0.92561212885748	0.131272235629275
13	56871234	56875176	1	loss	A	-1	germline	1	0.0161574423797474	0.0412391817008856
13	57210246	57214188	1	loss	A	-1	somatic	0	0.0261963494015628	0.0574730470962872
13	59587272	59610924	2	neutral	AA	54.5678	somatic	0	0.0556963699055535	0.124799548096483
13	62133804	62188992	2	neutral	AA	54.5678	somatic	0	0.0465442890550572	0.153007525529181
13	63028638	63032580	3	gain	AAB	2.29978	germline	1	0.0143497425831508	0.0367345245486165
13	63032580	63060174	3	gain	AAB	0.454143	germline	1	3.24003583467647e-09	1.10538292408258e-07
13	63060174	63062145	5	gain	AAABB	3.27671	germline	1	0.0832905031804711	0.270082141918001
13	63062145	63064116	3	gain	AAB	2.03076	germline	1	0.0833213109384783	0.270135638961875
13	63064116	63068058	4	gain	AAAB	1.91603	germline	1	0.014314535358832	0.0366450019256417
13	66600090	66604032	1	loss	A	-1	germline	1	0.0143270734613282	0.0366882511477115
13	67343157	67459446	2	neutral	AA	100	somatic	0	0.21571364085175	0.242012812887652
13	71338374	71348229	1	loss	A	-1	germline	1	0.000301588285021489	0.000253297165001665
13	71902080	71906022	1	loss	A	-1	somatic	0	0.0236830277329944	0.0577876998367673
13	79372170	79376112	1	loss	A	-1	somatic	0	0.021671038756814	0.0583861572065602
13	80107353	80113266	1	loss	A	-1	germline	1	0.00499989739639339	0.00963335937861776
13	80302482	80393148	2	neutral	AA	18.404	somatic	0	0.000154508673598561	0.000269948881431392
13	84703725	84707667	1	loss	A	-1	somatic	0	0.023243578150354	0.0644956987300696
13	86497335	86499306	1	loss	A	-1	somatic	0	0.0836699838543287	0.270740525616666
13	86741739	86757507	2	neutral	AA	100	germline	1	0.513516357913321	0.668318621666901
13	86818608	87526197	2	neutral	AA	100	somatic	0	0.842420466043244	0.15606257601665
13	90210699	90212670	0	loss	-	-1	germline	1	0.0832659598550907	0.270039516998021
13	98601246	98607159	1	loss	A	-1	somatic	0	0.00537870462966917	0.00953110952141345
13	109021923	109023894	0	loss	-	-1	germline	1	0.0832683658044015	0.270043695694616
13	109217052	109219023	0	loss	-	-1	germline	1	0.083271734228046	0.270049545949147
13	112656447	112729374	2	neutral	AA	8.12414	somatic	0	0.0367657619824217	0.0434042843777155
13	114132726	114140610	1	loss	A	-1	somatic	0	0.0179462568382175	0.0501872428226503
13	114154407	114156378	1	loss	A	-1	germline	1	0.0833140895421494	0.270123099898322
14	0	16093215	3	gain	AAB	-1	somatic	0	NA	NA
14	16093215	16095186	5	gain	-	-1	germline	1	0.0832837652135662	0.270070440470564
14	16095186	18487980	3	gain	AAB	-1	somatic	0	NA	NA
14	18491922	18659457	3	gain	AAB	-1	somatic	0	NA	NA
14	18659457	18661428	4	gain	AAAB	25.1474	germline	1	0.0832953162843241	0.270090500321313
14	18661428	18681138	3	gain	AAB	-1	somatic	0	NA	NA
14	18694935	19727739	3	gain	AAB	-1	somatic	0	NA	NA
14	19727739	19954404	3	gain	AAB	0.353417	somatic	0	7.94538114523417e-39	0
14	20236257	20238228	0	loss	-	-1	germline	1	0.083271734228046	0.270049545949147
14	26573022	26640036	2	neutral	AA	21.925	somatic	0	0.415777404515646	0.579348165767716
14	31587246	31652289	2	neutral	AA	54.5679	germline	1	0.703472814362626	0.488409741259017
14	35137017	35146872	1	loss	A	-1	germline	1	0.000283909495020865	0.00026434703767364
14	41140683	41199813	1	loss	A	-1	germline	1	3.9780215558346e-18	0
14	50869539	50875452	2	neutral	AA	36.3786	somatic	0	0.295815378770827	0.311584211216066
14	53824068	53847720	2	neutral	AA	100	somatic	0	0.669662827361618	0.843202361910781
14	58710177	58970349	2	neutral	AA	72.1689	somatic	0	0.000615508631389046	0.000921442128035022
14	59748894	59750865	0	loss	-	-1	germline	1	0.083271734228046	0.270049545949147
14	61325694	61355259	2	neutral	AA	51.7762	somatic	0	0.468563436278263	0.636744466884051
14	73102419	73169433	2	neutral	AA	13.6476	somatic	0	0.0169351780622201	0.0145991700279533
14	73512387	73634589	2	neutral	AA	22.9177	somatic	0	9.63173431626414e-05	7.49078112183277e-06
14	79640226	79648110	1	loss	A	-1	germline	1	0.00101215537518019	0.001393072026878
14	83879847	84715551	2	neutral	AA	6.83059	somatic	0	0.0310538477290694	0.0400757621784849
14	84829869	84835782	1	loss	A	-1	somatic	0	0.00464127824202063	0.00954830754392411
14	88795521	88797492	1	loss	A	-1	somatic	0	0.0834325844813646	0.270328794190525
14	89286300	89420328	2	neutral	AA	7.02065	somatic	0	0.339729099557654	0.164784037412593
14	91156779	91271097	2	neutral	AA	13.5821	somatic	0	0.0395515482787884	0.0693790264842604
14	99419211	99421182	4	gain	AABB	85.7992	somatic	0	0.0832991669296217	0.270097187179907
14	99927729	99929700	5	gain	AAABB	61.1828	somatic	0	0.0832900218824771	0.270081306088054
14	101711484	101725281	2	neutral	AA	12.1785	somatic	0	0.000903718954057558	0.00755741447062963
14	103237038	103240980	3	gain	-	-1	somatic	0	0.0143242610445499	0.0366603285540681
14	105328269	105371631	2	neutral	AA	7.39358	somatic	0	0.773711240729906	0.63204528884878
15	17025498	17027469	6	gain	-	-1	somatic	0	0.0832828026829111	0.270068768865425
15	17080686	17082657	19	gain	-	-1	somatic	0	0.083271734228046	0.270049545949153
15	20340720	20342691	18	gain	AAAAAAAAAAABBBBBBB	100	germline	1	0.083271734228046	0.270049545949153
15	20342691	20362401	7	gain	AAAAABB	4.58945	germline	1	2.03731570939968e-07	3.04894899327834e-08
15	20380140	20382111	3	gain	AAB	21.1911	germline	1	0.0833116825227043	0.270118920304886
15	20386053	20419560	7	gain	AAAAAAA	1.82928	germline	1	4.59780757414129e-06	1.66452948291429e-06
15	20646225	20671848	6	gain	AAAAAB	1.46092	germline	1	1.97774545308666e-09	7.56300577720026e-11
15	22221054	22250619	4	gain	AABB	40.1142	germline	1	2.04014965676826e-07	3.05220485552482e-08
15	23305104	23311017	1	loss	A	-1	germline	1	0.0186177397935722	0.0432254077281076
15	34435341	34520094	1	loss	A	-1	germline	1	3.29158655407576e-24	0
15	40448862	40484340	2	neutral	AA	72.1171	germline	1	0.719025407752313	0.524205827373318
15	45396072	45482796	2	neutral	AA	9.96438	somatic	0	0.1126968934743	0.285620099207063
15	48289500	48301326	1	loss	A	-1	germline	1	5.22451221748153e-05	2.56105246577709e-05
15	52156602	52233471	2	neutral	AA	18.1893	somatic	0	0.949064920993709	0.849336071788945
15	54551367	54553338	1	loss	A	-1	somatic	0	0.0834152352371684	0.270298685449092
15	56496744	56508570	1	loss	A	-1	germline	1	4.97621091459145e-05	4.60533578807709e-05
15	63052290	63054261	2	neutral	AA	100	somatic	0	0.706079634902807	0.852346288677457
15	72093267	72095238	0	loss	-	-1	germline	1	0.0832664410404477	0.270040352733564
15	74456496	74740320	2	neutral	AA	11.0684	somatic	0	0.00226467973022255	0.00491060331032411
15	77038506	77040477	0	loss	-	-1	germline	1	0.0832659598550907	0.270039516998021
15	77716530	77720472	1	loss	A	-1	somatic	0	0.0233285326646839	0.0542398785387218
15	80911521	81163809	2	neutral	AA	35.9423	somatic	0	0.859337180268268	0.756960191347288
15	81481140	81487053	1	loss	A	-1	germline	1	0.00408181440893163	0.00777858157467459
15	93458907	93472704	2	neutral	AA	36.3786	somatic	0	0.667662454451141	0.523479187906559
15	94872114	94945041	2	neutral	AA	55.0694	somatic	0	0.0295139789430209	0.118759517833266
15	99876483	99880425	1	loss	A	-1	germline	1	0.0229316178957708	0.0554233269221139
16	845559	847530	5	gain	AAABB	62.1351	germline	1	0.0832900218824771	0.270081306088054
16	1024920	1026891	6	gain	AAAABB	24.629	germline	1	0.0832808776486345	0.270065425677805
16	1732509	1740393	2	neutral	AA	11.383	germline	1	0.217393981716888	0.577745634937934
16	5570046	5698161	2	neutral	AA	13.6654	somatic	0	0.0370942535657975	0.141306914297584
16	9242019	9251874	2	neutral	AA	54.5678	somatic	0	0.1794107912394	0.0929298013401046
16	21523320	21582450	3	gain	AAB	3.00088	somatic	0	4.32528069131082e-10	1.10522702101434e-11
16	22416183	22426038	2	neutral	AA	54.5678	somatic	0	0.944881557258864	0.70507550830544
16	22615254	22700007	3	gain	AAB	1.44301	germline	1	3.43526847243557e-29	0
16	25343118	25532334	2	neutral	AA	13.3046	germline	1	0.841336655818345	0.35965408921285
16	34060851	34064793	19	gain	AAAAAAAAAAAAABBBBBB	7.1826	germline	1	0.0143092950231016	0.0366392844708149
16	34068735	34084503	2	neutral	AA	15.6198	germline	1	0.0396199426573849	0.0211620849518992
16	34084503	34086474	19	gain	AAAAAAAAAAAABBBBBBB	100	germline	1	0.083271734228046	0.270049545949153
16	34086474	34096329	2	neutral	AA	70.9244	somatic	0	0.00706405762911947	0.0337505673891396
16	34096329	34098300	15	gain	AAAAAAAAAABBBBB	4.87206	germline	1	0.0832731778719688	0.270052053229416
16	34098300	34100271	5	gain	AAAAA	1.86476	germline	1	0.0832900218824771	0.270081306088054
16	34100271	34161372	2	neutral	AA	4.65248	germline	1	0.0156380510744942	0.0337639064792651
16	34161372	34206705	3	gain	AAB	0.535751	germline	1	0.00011959932852396	0.000126030880850392
16	34206705	34210647	2	neutral	AA	9.09486	somatic	0	0.0467750422617558	0.101372709272132
16	34210647	34212618	4	gain	AABB	31.2246	germline	1	0.0832909844807182	0.270082977749836
16	34212618	34959627	2	neutral	AA	1.33915	somatic	0	1.14146948692446e-24	0
16	35982576	36089010	2	neutral	AA	1.48814	germline	1	2.48007041441209e-08	1.75313283312661e-06
16	36124488	36126459	5	gain	-	-1	germline	1	0.0832837652135662	0.270070440470564
16	46401282	46403253	60	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABB	30.4899	germline	1	0.0832674034179194	0.27004202421032
16	46403253	46466325	2	neutral	AA	0.383887	germline	1	3.31888426133413e-07	9.96106131356811e-07
16	55775358	55787184	1	loss	A	-1	germline	1	0.0052601250678632	0.0078055897923639
16	58513077	58582062	2	neutral	AA	21.8373	somatic	0	0.677621754734214	0.507673319544983
16	59240376	59264028	2	neutral	AA	30.0815	somatic	0	0.288047910547769	0.381393649166448
16	74109600	74111571	0	loss	-	-1	germline	1	0.0832688470010214	0.270044531439599
16	74714697	74789595	2	neutral	AA	43.8942	somatic	0	0.951763227372404	0.907883159201016
16	76506336	76510278	1	loss	A	-1	germline	1	0.0176758159960958	0.045637924203488
16	78167889	78197454	2	neutral	AA	27.2841	somatic	0	0.596091857921684	0.854654796761181
16	81717660	81778761	2	neutral	AA	58.916	germline	1	0.00795126544723543	0.00101963943979977
16	84959955	85052592	2	neutral	AA	72.2957	somatic	0	0.547073086802828	0.454502535927194
16	88499871	88501842	4	gain	AAAB	16.5117	germline	1	0.0832924283949769	0.270085485256669
17	13197816	13215555	2	neutral	AA	54.5679	somatic	0	0.72251593044338	0.990425406330647
17	16390836	16422372	2	neutral	AA	100	germline	1	0.04057670746465	0.0766798199521475
17	16816572	16820514	3	gain	AAB	6.66155	germline	1	0.0143223610386413	0.036659413374078
17	21290742	21304539	4	gain	AABB	0.189933	germline	1	4.60259554331243e-06	1.66547516156079e-06
17	21675087	21856419	4	gain	-	-1	somatic	0	9.25388573553808e-09	5.60841040275761e-10
17	21856419	21858390	6	gain	-	-1	germline	1	0.0832828026829111	0.270068768865425
17	21858390	21884013	3	gain	-	-1	germline	1	4.64366654229967e-10	1.6494361432251e-11
17	21884013	21968766	1	loss	A	-1	somatic	0	2.4439196584238e-12	1.11022302462516e-16
17	21978621	21990447	9	gain	-	-1	germline	1	0.00270075745999448	0.00495868799560695
17	22124475	22150098	6	gain	AAAABB	0.21268	germline	1	4.24890199023277e-10	1.02424735359818e-11
17	22150098	22152069	4	gain	AABB	6.03801	germline	1	0.0832953162843241	0.270090500321313
17	22152069	22157982	6	gain	AAAABB	1.56092	germline	1	0.0143118770059918	0.036640656588788
17	26714934	26809542	3	gain	-	-1	somatic	0	4.22687463328082e-11	1.14743770041059e-11
17	26809542	26827281	4	gain	-	-1	germline	1	9.67034057899135e-07	2.26360743149634e-07
17	26827281	26864730	3	gain	-	-1	germline	1	9.00932986716595e-12	7.22160109489778e-10
17	26864730	26868672	4	gain	-	-1	germline	1	0.0143144593998495	0.0366447732124618
17	26868672	26878527	3	gain	-	-1	germline	1	0.000126687729217899	0.000150130685544592
17	54080298	54088182	1	loss	A	-1	somatic	0	0.00144962469737404	0.00165608676179585
17	64353150	64473381	2	neutral	AA	100	somatic	0	1.41844631877289e-06	1.11112277823011e-07
17	65098188	65123811	2	neutral	AA	37.7101	somatic	0	0.0020917040206566	0.00522208343602182
17	67071159	67146057	2	neutral	AA	18.2024	somatic	0	0.990855814649594	0.998575152089148
17	78284178	78286149	1	loss	A	-1	somatic	0	0.124379137036004	0.335426077298484
17	78286149	78325569	2	neutral	AA	100	somatic	0	0.0527726357815893	0.231276726069668
17	79498314	79519995	2	neutral	AA	16.7423	germline	1	0.0140764138068842	0.052055479610905
17	81248562	81358938	2	neutral	AA	17.3392	germline	1	0.804125980689697	0.855922130298366
18	5209353	5211324	1	loss	A	-1	germline	1	0.0841449676186607	0.271562842683889
18	5323671	5327613	1	loss	A	-1	germline	1	0.0210372381225337	0.0571750033714176
18	29594565	29596536	0	loss	-	-1	germline	1	0.0832702906043969	0.270047038685877
18	40679469	40687353	1	loss	A	-1	germline	1	0.00121227126378368	0.00159718962088218
18	41284566	41288508	0	loss	-	-1	germline	1	0.0143062579222502	0.0366317386255354
18	41347638	41351580	1	loss	A	-1	germline	1	0.0219846932414894	0.0596450744613278
18	44077473	44079444	1	loss	A	-1	somatic	0	0.0882455496854688	0.278582866754249
18	47700171	47704113	2	neutral	AA	36.3786	somatic	0	0.737198883466388	0.773792386568789
18	47849967	47853909	1	loss	A	-1	somatic	0	0.0295380915745529	0.0566399347444947
18	48139704	48181095	2	neutral	AA	18.665	somatic	0	0.420061986230758	0.755707380035273
18	49805199	49889952	2	neutral	AA	3.30007	germline	1	7.45389530331285e-05	0.000490862452859231
18	50167863	50171805	1	loss	A	-1	somatic	0	0.0259743659886553	0.0567474718482608
18	50832090	50855742	2	neutral	AA	36.4086	somatic	0	0.535992303996595	0.630425073518589
18	53404245	53431839	2	neutral	AA	36.3786	somatic	0	0.3578633737656	0.646194784855655
18	55113102	55119015	2	neutral	AA	54.5678	somatic	0	0.0240695270870869	0.0462640446269171
18	55138725	55154493	2	neutral	AA	27.284	somatic	0	0.864577295640162	0.932260114232796
18	55702431	55706373	2	neutral	AA	54.5679	somatic	0	0.779098734653851	0.976488122905758
18	58696380	58700322	2	neutral	AA	100	germline	1	0.960159607374581	0.997307943042673
18	59244318	59252202	2	neutral	AA	79.7903	somatic	0	0.808472461759889	0.663034697954863
18	62711307	62727075	2	neutral	AA	27.3104	somatic	0	0.865964630744142	0.992278213388526
18	65255868	65330766	2	neutral	AA	100	somatic	0	0.482956959428798	0.523437385642872
18	66176325	66188151	2	neutral	AA	36.3787	somatic	0	0.956355782382209	0.971509336082629
18	68373990	68399613	2	neutral	AA	36.3791	somatic	0	0.977927867478288	0.417734410519981
18	68521815	68527728	2	neutral	AA	100	somatic	0	0.429300645897892	0.562993985324071
18	68746509	68748480	2	neutral	AA	100	somatic	0	0.128451051751887	0.341371891532379
18	69846327	69852240	2	neutral	AA	100	germline	1	0.231529394728967	0.561878828606288
18	70065108	70069050	2	neutral	AA	100	germline	1	0.603423087435823	0.5200402777248
18	71263476	71295012	2	neutral	AA	80.4706	somatic	0	0.50848587298229	0.757823777777427
18	71902080	71904051	2	neutral	AA	100	somatic	0	0.481974576151178	0.706304543424555
18	75808602	75873645	2	neutral	AA	27.4248	somatic	0	0.00222076377972907	0.0138150579011463
18	76510278	76512249	2	neutral	AA	100	somatic	0	0.1804775168218	0.411479810268774
18	76965579	76967550	3	gain	AAA	13.2964	somatic	0	0.0833217923829269	0.27013647491455
18	76967550	76975434	2	neutral	AA	9.77716	germline	1	0.814962154250783	0.756018124847849
18	79200693	79202664	3	gain	AAB	29.3945	germline	1	0.0833193851832174	0.270132295170057
18	79519995	79521966	1	loss	A	-1	somatic	0	0.0839224565262941	0.271177862497956
18	79825500	79953615	2	neutral	AA	14.6504	somatic	0	0.778153658938939	0.637683668958989
18	80217729	80259120	2	neutral	AA	47.6286	somatic	0	0.0125982006788179	0.0564859664687478
19	441504	502605	2	neutral	AA	67.9782	somatic	0	0.00475034738083858	0.00329903635139295
19	5780943	5788827	2	neutral	AA	12.1262	somatic	0	0.265909886211462	0.194516430520021
19	6159375	6165288	2	neutral	AA	100	somatic	0	0.0389564573953415	0.141012448102365
19	6248070	6265809	2	neutral	AA	36.3786	somatic	0	0.806783203784672	0.991300676333653
19	7448409	7450380	3	gain	AAB	8.21576	germline	1	0.0833160151982643	0.270126443607068
19	7450380	7452351	14	gain	AAAAAAAAABBBBB	12.2419	germline	1	0.0832731778719688	0.270052053229416
19	8881326	8920746	2	neutral	AA	0.994571	germline	1	0.065795358614296	0.223456948149267
19	11053368	11057310	2	neutral	AA	100	somatic	0	0.900197653137819	0.968959504822954
19	15894144	15935535	2	neutral	AA	7.73051	germline	1	0.194855206910058	0.132511432915359
19	17537958	17557668	2	neutral	AA	18.3739	somatic	0	0.104232376281709	0.148319632823591
19	17650305	17671986	2	neutral	AA	15.6355	somatic	0	0.0931065042620838	0.0843171918630818
19	20543733	20593008	2	neutral	AA	21.8296	germline	1	0.0453932100239765	0.0985012415447747
19	21306510	21586392	2	neutral	AA	0.349129	somatic	0	0.0152422245513039	0.00705302072938752
19	23803767	23817564	2	neutral	AA	65.4906	somatic	0	0.263703224460247	0.410378551574494
19	24330024	24387183	4	gain	AABB	0.29282	germline	1	1.0949382867102e-20	0
19	24387183	24404922	4	gain	AABB	1.57993	germline	1	0.000107661158699159	9.0892709786905e-05
19	24414777	24418719	3	gain	AAB	26.6202	germline	1	0.0144886875381188	0.0371433352155334
19	27337770	27341712	4	gain	AAAB	4.72512	germline	1	0.014314535358832	0.0366463742309487
19	27341712	27343683	2	neutral	AA	14.3604	somatic	0	0.48971738804163	0.712344197538283
19	27347625	27379161	6	gain	AAAABB	0.139365	germline	1	9.15097002526337e-11	1.38566935703466e-12
19	27379161	27383103	4	gain	AAAB	5.74977	germline	1	0.014318409738437	0.0366550665420898
19	27383103	27389016	6	gain	AAAABB	0.52808	germline	1	0.0027012555883482	0.00495924512892987
19	27389016	27392958	5	gain	AAABB	1.32709	germline	1	0.0143138517407896	0.0366440870804159
19	27392958	27398871	6	gain	AAAABB	0.53252	germline	1	0.00270122791234848	0.00495924512892987
19	29511783	29515725	1	loss	A	-1	germline	1	0.0168647802147113	0.0444240681964984
19	34391979	34393950	4	gain	AAAB	5.46763	germline	1	0.0832933910157474	0.270087156937331
19	35361711	35369595	1	loss	A	-1	germline	1	0.000965511030493913	0.00154182944506842
19	35876142	35901765	2	neutral	AA	54.5678	germline	1	0.160057987046282	0.166839536089666
19	40551354	40626252	2	neutral	AA	36.3786	somatic	0	0.000425536824780222	0.00042927046685215
19	46271196	46308645	2	neutral	AA	87.4715	somatic	0	0.0414935111866474	0.0902322596920618
19	50573889	50579802	1	loss	A	-1	somatic	0	0.00491539162227488	0.00944361841154484
19	51031161	51042987	2	neutral	AA	28.059	somatic	0	0.915381663847146	0.584638713890291
19	52619787	52625700	2	neutral	AA	18.379	somatic	0	0.197594885404562	0.218788445722476
19	55877850	56049327	2	neutral	AA	7.56914	somatic	0	2.71383668369902e-05	9.15058871462371e-05
19	56090718	56138022	2	neutral	AA	8.78576	somatic	0	0.0117819907285689	0.0107308352374076
20	61101	67014	8	gain	-	-1	germline	1	0.0143096747006955	0.0366372263781491
20	5615379	5652828	2	neutral	AA	37.633	somatic	0	0.00131340070144212	0.000539084249882582
20	5763204	5826276	2	neutral	AA	100	germline	1	0.00115315684919462	0.00409193968996602
20	7460235	7481916	2	neutral	AA	27.4274	somatic	0	0.28027663859329	0.774681254809741
20	8684226	8692110	2	neutral	AA	55.0709	somatic	0	0.301438949271739	0.345651263200713
20	9768276	9801783	2	neutral	AA	36.3786	somatic	0	0.973545706534512	0.884619317869951
20	11695914	11705769	2	neutral	AA	100	somatic	0	0.312844448966032	0.19466268275125
20	16806717	16857963	2	neutral	AA	100	somatic	0	0.0243225935056556	0.10501294011087
20	19160091	19223163	2	neutral	AA	54.5678	somatic	0	0.0124645927221965	0.0299828908359359
20	22528530	22562037	2	neutral	AA	100	somatic	0	0.0224599521658297	0.119234067032523
20	25863462	25869375	2	neutral	AA	6.70015	somatic	0	0.17391523793796	0.552125878587835
20	26316792	26322705	0	loss	-	-1	germline	1	0.0143336883605531	0.0367141304745141
20	26322705	26381835	2	neutral	AA	5.29224	germline	1	0.000499531695426247	0.0123971486041784
20	28557819	28559790	7	gain	-	-1	germline	1	0.0832784714064764	0.270061246735762
20	28780542	28788426	7	gain	-	-1	germline	1	0.00270118639883472	0.00495989519032825
20	28804194	28831788	10	gain	-	-1	germline	1	9.2293213854311e-09	5.58995960631137e-10
20	28835730	28837701	4	gain	-	-1	germline	1	0.0832953162843241	0.270090500321313
20	28869237	28873179	6	gain	-	-1	germline	1	0.0143118770059918	0.0366429435519845
20	28896831	28898802	15	gain	-	-1	somatic	0	0.0832726966550752	0.27005121746744
20	29206278	29261466	1	loss	A	-1	germline	1	0.000302856051402762	0.00177326414967294
20	29263437	29265408	8	gain	-	-1	germline	1	0.0832775089253824	0.270059575172161
20	29265408	29379726	2	neutral	AA	36.4048	germline	1	1.99752328899236e-05	5.17292165769234e-08
20	29407320	29411262	5	gain	-	-1	germline	1	0.0143139276969277	0.0366434009596103
20	29876418	29878389	9	gain	-	-1	germline	1	0.0832755839902272	0.270056232067616
20	29886273	29888244	3	gain	-	-1	germline	1	0.0833564623055441	0.270196668469286
20	29890215	29894157	5	gain	-	-1	germline	1	0.0143134719654324	0.0366434009596103
20	31161510	31165452	3	gain	-	-1	germline	1	0.0143339925586188	0.0366859617106675
20	31165452	31167423	7	gain	-	-1	germline	1	0.0832794338965814	0.270062918306915
20	31167423	31183191	3	gain	-	-1	germline	1	1.10780264257954e-06	4.16721538942788e-07
20	31183191	31187133	23	gain	-	-1	germline	1	0.0143082319731142	0.0366360830370417
20	31187133	31191075	4	gain	-	-1	germline	1	0.0143143834412226	0.0366475178530515
20	31191075	31246263	3	gain	AAB	6.37926	germline	1	8.00653932929486e-08	1.3275990673467e-07
20	32058315	32119416	2	neutral	AA	21.8271	germline	1	0.150281190995945	0.0370723686171068
20	35785476	35844606	2	neutral	AA	27.2871	somatic	0	5.74473681058735e-09	9.40225819423546e-09
20	36889236	36940482	2	neutral	AA	27.284	somatic	0	0.000802243094461829	0.00323357904287802
20	38639484	38649339	2	neutral	AA	54.5678	somatic	0	0.583142012868952	0.431623263227112
20	39745215	39760983	2	neutral	AA	100	somatic	0	0.52527635745751	0.428015139889805
20	51920082	51937821	2	neutral	AA	23.2054	somatic	0	0.0135648149903443	0.035674747391651
20	52129008	52142805	2	neutral	AA	81.556	somatic	0	0.0731422968459348	0.148486304497056
20	52142805	52144776	0	loss	-	-1	somatic	0	0.0832702906043969	0.270047038685877
20	52568541	52574454	2	neutral	AA	54.5678	somatic	0	0.168031347190853	0.46723251321751
20	52708482	52734105	2	neutral	AA	36.3806	somatic	0	0.387902989212844	0.531297746918726
20	53835894	53841807	2	neutral	AA	21.8271	somatic	0	0.420863292593361	0.437292607342678
20	57976965	57980907	2	neutral	AA	54.5679	somatic	0	0.100425143630846	0.227790121743463
20	59851386	60030747	2	neutral	AA	13.4453	germline	1	0.895965366128763	0.538767126237251
20	61238970	61242912	2	neutral	AA	36.7832	somatic	0	0.726820767352507	0.924312853918031
20	64002312	64031877	2	neutral	AA	49.3306	somatic	0	0.239093650441237	0.390534367868632
21	8989731	8995644	9	gain	AAAAAABBB	1.37716	somatic	0	0.00270074362429402	0.00495859514563135
21	9736740	9764334	5	gain	AAAAB	3.79887	somatic	0	0.000532536274107028	0.000671369294316548
21	10270881	10272852	43	gain	-	-1	somatic	0	0.0832688470010214	0.270044531439605
21	10414764	10416735	17	gain	AAAAAAAAAAAABBBBB	100	somatic	0	0.083271734228046	0.270049545949153
21	10637487	10655226	4	gain	AABB	14.2256	germline	1	0.00270204446327054	0.0049603131281869
21	10655226	10661139	7	gain	AAAAABB	33.1846	germline	1	0.00270104802466588	0.00495929155929686
21	10661139	10690704	5	gain	AAABB	2.42709	germline	1	9.15684269367028e-11	1.38689060236175e-12
21	10690704	10692675	10	gain	AAAAAAABBB	30.2344	germline	1	0.0832751027620701	0.2700553962962
21	10694646	10704501	5	gain	AAAAA	17.9678	germline	1	0.000107658488221812	9.08898733297248e-05
21	10704501	10708443	8	gain	AAAAAAAA	14.8101	germline	1	0.0143098265742214	0.0366381410735128
21	10708443	10712385	5	gain	AAAAA	2.97187	germline	1	0.0143134719654324	0.0366429435519845
21	10712385	10722240	7	gain	AAAAABB	100	germline	1	0.000107598685906834	9.08558424022043e-05
21	10722240	10738008	5	gain	AAAAA	0.746511	germline	1	9.65164502121625e-07	2.25390871411157e-07
21	10751805	10755747	13	gain	AAAAAAAAABBBB	43.1938	germline	1	0.0143086875574351	0.0366353970473619
21	10763631	10765602	4	gain	AABB	27.9176	germline	1	0.0832943536455299	0.270088828625546
21	15740406	15815304	2	neutral	AA	23.4661	somatic	0	0.0910508330211233	0.157572071048081
21	16444053	16449966	2	neutral	AA	38.7359	somatic	0	0.244457734852384	0.585128299464368
21	19012266	19024092	2	neutral	AA	100	germline	1	0.888540365655644	0.994707446163313
21	19120671	19122642	2	neutral	AA	100	somatic	0	0.530253367716654	0.742317417314882
21	20587095	20589066	0	loss	-	-1	germline	1	0.0832784714064764	0.270061246735755
21	20742804	20776311	2	neutral	AA	100	somatic	0	0.135982483617356	0.17299431328927
21	21026628	21081816	2	neutral	AA	100	somatic	0	0.424715136721603	0.360926997005379
21	22443777	22467429	2	neutral	AA	21.9513	somatic	0	0.461941239163873	0.684179453154267
21	23397741	23405625	2	neutral	AA	50.762	somatic	0	0.223189081388012	0.512631264441306
21	24962715	24980454	2	neutral	AA	54.5678	somatic	0	0.12522865270243	0.197302179009586
21	26724789	26981019	2	neutral	AA	47.3267	somatic	0	0.0246906543363178	0.0677169337677616
21	29864592	29868534	2	neutral	AA	36.3789	somatic	0	0.966211437743797	0.822874936430969
21	30345516	30355371	2	neutral	AA	54.5678	somatic	0	0.941604213216905	0.952374007913563
21	31918374	31930200	2	neutral	AA	23.7581	somatic	0	0.893017820302239	0.741719734681252
21	32935410	32955120	2	neutral	AA	33.5112	somatic	0	0.117921216419917	0.0827840168493419
21	33266538	33268509	2	neutral	AA	100	somatic	0	0.944166732346934	0.949524614883824
21	33690303	33692274	1	loss	A	-1	somatic	0	0.125562576377087	0.337162533493787
21	36451674	36516717	2	neutral	AA	9.26688	somatic	0	0.123328323355778	0.274169502480164
21	37677636	37703259	2	neutral	AA	15.6007	somatic	0	0.935962229585349	0.955292867316728
21	40342428	40379877	2	neutral	AA	48.383	somatic	0	0.32024743025216	0.352063092683221
21	41473782	41475753	0	loss	-	-1	germline	1	0.0832702906043969	0.270047038685877
21	42256269	42285834	2	neutral	AA	43.9158	somatic	0	0.455388752904904	0.712091492008637
21	43275276	43287102	2	neutral	AA	12.9768	somatic	0	0.554811574681559	0.651030275190458
21	44087328	44272602	2	neutral	AA	82.642	somatic	0	0.122979130861539	0.256129912389348
21	44574165	44589933	2	neutral	AA	32.5775	somatic	0	0.650471675805705	0.600955603877282
21	45307377	45319203	2	neutral	AA	15.5908	somatic	0	0.0370815521674314	0.0264460615562113
21	45796185	45798156	4	gain	AAAA	6.26533	germline	1	0.0832924283949769	0.270085485256669
21	46486035	46488006	2	neutral	AA	100	somatic	0	0.511463611872233	0.728603390280259
22	11213019	11214990	5	gain	-	-1	somatic	0	0.0832876154263	0.270077126966642
22	11626929	11630871	4	gain	AABB	29.8764	germline	1	0.0143151430434919	0.0366456880726749
22	16560342	16568226	2	neutral	AA	2.6067	germline	1	0.383355373798121	0.440480312966952
22	17041266	17072802	2	neutral	AA	27.2839	somatic	0	0.731573619814123	0.929437848573888
22	18730413	18732384	30	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAABB	100	germline	1	0.083269328199894	0.270045367186476
22	19583856	19585827	1	loss	A	-1	somatic	0	0.0848610443644847	0.27279930730328
22	19613421	19621305	2	neutral	AA	54.6187	somatic	0	0.919758679424353	0.992821133599825
22	20596950	20598921	1	loss	A	-1	somatic	0	0.0834441522677384	0.270348868044432
22	29119554	29121525	4	gain	AAAA	9.0649	somatic	0	0.0832977229207374	0.270094679593774
22	29121525	29168829	2	neutral	AA	40.8557	germline	1	0.235726137689323	0.0199610312186964
22	32145039	32147010	1	loss	A	-1	germline	1	0.0833815089604737	0.270240147679755
22	34466877	34470819	1	loss	A	-1	somatic	0	0.0273194724379968	0.0555472488687914
22	35154756	35166582	2	neutral	AA	100	somatic	0	0.120219091276571	0.286924402845132
22	35249364	35251335	1	loss	A	-1	somatic	0	0.121390526046879	0.331012393495342
22	35596260	35604144	2	neutral	AA	27.284	somatic	0	0.293176903905426	0.373585830313193
22	37711143	37750563	2	neutral	AA	18.2741	somatic	0	0.0348842577605652	0.0340474298953775
22	38964699	38990322	1	loss	A	-1	germline	1	8.61251341679898e-09	6.14945205867912e-10
22	39707766	39757041	2	neutral	AA	14.3972	somatic	0	0.328627179276449	0.367772813883787
22	40131531	40145328	2	neutral	AA	54.5678	somatic	0	0.780102611955209	0.496599085798582
22	41325957	41331870	2	neutral	AA	54.5678	somatic	0	0.196104725344582	0.401036816281542
22	44367210	44379036	2	neutral	AA	100	somatic	0	0.596306093836388	0.437207248149454
22	45553752	45561636	2	neutral	AA	36.3806	somatic	0	0.547842360656266	0.683322243429751
22	47461680	47477448	2	neutral	AA	54.5678	somatic	0	0.225974332968375	0.342419551767026
22	49273029	49304565	2	neutral	AA	7.91571	somatic	0	0.0376468940947773	0.0427604647508278
22	49846590	49919517	2	neutral	AA	27.0384	somatic	0	0.477390647460196	0.689746489551101
X	3524148	3526119	2	gain	-	-1	somatic	0	0.865561205104535	0.92401555287187
X	5136426	5140368	0	loss	-	-1	germline	1	0.014311269443635	0.0366406565887865
X	5240889	5246802	0	loss	-	-1	germline	1	0.0143073967684261	0.0366337964484788
X	29356074	29358045	2	gain	-	-1	somatic	0	0.1435377896932	0.362794258670649
X	35598231	35602173	0	loss	-	-1	somatic	0	0.01431461131817	0.03665460900706
X	62512236	62516178	2	gain	AA	5.18257	somatic	0	0.0841641036585104	0.172937283934211
X	67414113	67416084	3	gain	AAB	3.82233	somatic	0	0.0835381886939706	0.270512008430245
X	78268410	78270381	4	gain	AAAB	100	somatic	0	0.0832962789321304	0.270092172024633
X	88403292	88407234	0	loss	-	-1	somatic	0	0.0143101303255388	0.0366431722551713
X	126776691	126780633	0	loss	-	-1	somatic	0	0.0143195494378776	0.0366687949166299
X	140721516	140725458	2	gain	AA	41.2795	somatic	0	0.0447948140021804	0.0920864572610423
X	141381801	141385743	0	loss	-	-1	germline	1	0.0143075486206251	0.0366344824119358
X	145339569	145343511	0	loss	-	-1	germline	1	0.0143080801145174	0.0366367690379583
X	151124454	151128396	0	loss	-	-1	somatic	0	0.0143155228579603	0.0366555240821131
Y	10623690	10753776	3	gain	AAB	1.73979	somatic	0	0.00281722724808151	0.000114027212725687
Y	10753776	10755747	6	gain	-	-1	germline	1	0.0832828026829111	0.270068768865425
Y	10755747	10759689	3	gain	-	-1	germline	1	0.0143371109171364	0.0366827567087927
Y	10759689	10763631	8	gain	-	-1	germline	1	0.0143098265742214	0.0366376837233334
Y	10763631	10767573	2	gain	-	-1	germline	1	0.850339999936863	0.699687053151647
Y	10767573	10773486	4	gain	-	-1	germline	1	0.0027029166225744	0.00496212456530154
Y	10773486	10775457	2	gain	-	-1	germline	1	0.185309427090648	0.41752933287236
Y	10775457	10777428	6	gain	-	-1	germline	1	0.0832808776486345	0.270065425677805
Y	10777428	10783341	2	gain	-	-1	germline	1	0.202146239356366	0.14218892262294
Y	10783341	10785312	4	gain	-	-1	germline	1	0.0832914657832182	0.270083813583559
Y	10785312	10789254	2	gain	-	-1	germline	1	0.340984397790617	0.522636731529086
Y	10789254	10791225	6	gain	-	-1	germline	1	0.0832828026829111	0.270068768865425
Y	10791225	10795167	2	gain	-	-1	germline	1	0.0745993890036559	0.238938090347941
Y	10795167	10797138	7	gain	-	-1	germline	1	0.0832794338965814	0.270062918306915
Y	10797138	10801080	3	gain	-	-1	germline	1	0.0144309403514293	0.0369920174343178
Y	10801080	10803051	5	gain	-	-1	germline	1	0.0832871341418233	0.270076291148024
Y	10803051	10806993	2	gain	-	-1	germline	1	0.998207520851451	0.822428680038104
Y	10806993	10808964	6	gain	-	-1	germline	1	0.0832823214209628	0.270067933065688
Y	10810935	10820790	2	gain	-	-1	germline	1	0.0483290665839849	0.142003872852832
Y	10820790	10826703	4	gain	-	-1	germline	1	0.0118973888383097	0.063850434333013
Y	10826703	10844442	2	gain	-	-1	germline	1	0.276355809668491	0.32929845319977
Y	10844442	10846413	4	gain	-	-1	germline	1	0.0832905031804711	0.270082141918001
Y	10846413	10887804	2	gain	-	-1	germline	1	0.580506463451377	0.0675376439060718
Y	10887804	10893717	4	gain	-	-1	germline	1	0.0143154468943555	0.0366461455102752
Y	10923282	10925253	3	gain	-	-1	germline	1	0.0833583887549224	0.270200012842667
Y	10925253	10927224	7	gain	-	-1	germline	1	0.0832784714064764	0.270061246735762
Y	10927224	10935108	2	gain	-	-1	germline	1	0.205468035268672	0.393478799185202
Y	10935108	10939050	4	gain	-	-1	germline	1	0.0143143074829512	0.0366440870804159
Y	10939050	10964673	2	gain	-	-1	germline	1	0.0705716497818081	0.0317536131503124
Y	10970586	10974528	4	gain	-	-1	germline	1	0.0143181058321002	0.0366541514770301
Y	10974528	10980441	2	gain	-	-1	germline	1	0.0145014348942574	0.019013334746397
Y	10980441	10986354	3	gain	-	-1	germline	1	0.00670100590621036	0.0246838616227908
Y	10986354	10988325	19	gain	-	-1	germline	1	0.0832712530179103	0.270048710192842
Y	10988325	10990296	5	gain	-	-1	germline	1	0.0832900218824771	0.270081306088054
Y	10990296	10998180	2	gain	-	-1	germline	1	0.724495334129306	0.914786137192912
Y	10998180	11000151	9	gain	-	-1	germline	1	0.0832755839902272	0.270056232067616
Y	11000151	11011977	2	gain	-	-1	germline	1	0.98631329413201	0.402922785988121
Y	11013948	11015919	24	gain	-	-1	germline	1	0.0832707718100273	0.270047874438418
Y	11017890	11039571	2	gain	AA	100	germline	1	0.539797836732539	0.331745179410807
Y	11291859	11305656	36	gain	AAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBB	6.9535	germline	1	4.59446108024921e-06	1.66358432218683e-06
Y	11305656	11327337	9	gain	AAAAAABBB	0.44722	germline	1	4.5969988114203e-06	1.66489314412654e-06
Y	11331279	11335221	16	gain	AAAAAAAAAABBBBBB	33.3969	germline	1	0.0143087634893993	0.0366367690379599
Y	11686059	11688030	4	gain	AAAA	81.5449	germline	1	0.0832905031804711	0.270082141918001
Y	11688030	11690001	2	gain	AB	9.44189	germline	1	0.199115015624029	0.434475098499543
Y	11690001	11691972	10	gain	AAAAAAABBB	27.514	germline	1	0.0832751027620701	0.2700553962962
Y	11717595	11719566	4	gain	AAAA	6.42233	germline	1	0.0832972415889487	0.270093843735506
Y	11721537	11723508	49	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBB	100	germline	1	0.0832683658044015	0.270043695694622
Y	11729421	11731392	4	gain	AAAB	41.2735	germline	1	0.0832919470879711	0.270084649419169
Y	11731392	11743218	2	gain	AA	4.79495	germline	1	0.690786645960684	0.490097029254558
Y	11743218	11747160	3	gain	AAB	3.32499	germline	1	0.0143306466930794	0.0366884800982925
Y	11747160	11749131	13	gain	AAAAAAAABBBBB	66.8062	germline	1	0.0832736590911151	0.27005288899328
Y	26638065	26640036	7	gain	AAAABBB	8.14664	germline	1	0.0832784714064764	0.270061246735762
Y	26640036	26655804	2	gain	AB	100	germline	1	0.594263335813134	0.411748292636332
Y	56821959	56837727	26	gain	AAAAAAAAAAAAAAAAABBBBBBBBB	7.36864	germline	1	4.59508977349466e-06	1.66398413470326e-06
Y	56837727	56851524	8	gain	AAAAAAAB	5.67252	germline	1	0.000107584273966901	9.08501717579169e-05
