chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	16613010	16635498	9	gain	AAAAAABBB	4.02568	germline	1	0.00270071272198416	0.00495859578152336
1	16719828	16725450	5	gain	AAABB	4.72904	germline	1	0.014310855838798	0.0366385473590786
1	16882866	16939086	3	gain	AAB	0.878297	germline	1	4.34682007158489e-08	4.17061563062759e-09
1	31429791	31432602	4	gain	AAAA	3.81625	germline	1	0.0832830323259688	0.27006898988197
1	54730170	54752658	2	neutral	AA	46.2892	somatic	0	0.101438909517938	0.0512302188592392
1	63756291	63773157	2	neutral	AA	54.5678	somatic	0	0.967279651054465	0.76005978785461
1	102286668	102382242	2	neutral	AA	55.6368	somatic	0	0.862402208017165	0.526957998724825
1	125081067	125083878	4	gain	-	-1	germline	1	0.0832830323259688	0.27006898988197
1	125083878	125165397	3	gain	-	-1	somatic	0	0.0907426398730664	0.0100117871043038
1	125165397	143737674	1	loss	A	-1	germline	1	3.7878834731998e-32	0
1	152583891	152614812	1	loss	A	-1	germline	1	8.19516317287161e-08	5.4289495121651e-09
1	155082870	155133468	2	neutral	AA	54.5678	somatic	0	0.340013634672109	0.19994906847671
1	155841840	155973957	2	neutral	AA	33.2055	somatic	0	8.61449988087877e-05	0.000221074050784864
1	174928530	174962262	2	neutral	AA	29.2059	somatic	0	0.210830655358165	0.148014886298824
1	187746690	187755123	1	loss	A	-1	germline	1	0.0166490672945704	0.0437663464302951
1	193104456	193135377	2	neutral	AA	36.3794	somatic	0	0.825675804579931	0.80978802422036
1	196770000	196826220	1	loss	A	-1	germline	1	0.000255838590814022	0.000239751453969261
1	227010738	227027604	2	neutral	AA	100	germline	1	0.699976825100057	0.928597604453712
1	228067674	228073296	1	loss	A	-1	germline	1	0.0202620132194355	0.0550368943470441
1	234774720	234777531	5	gain	AAABB	66.3602	germline	1	0.0832802890166665	0.270064225601556
1	234777531	234783153	9	gain	AAAAAAABB	7.77619	germline	1	0.0143091243668151	0.0366359403713972
1	236095890	236098701	5	gain	AAABB	8.03009	germline	1	0.0832816606621676	0.270066607734094
2	3179241	3182052	6	gain	-	-1	germline	1	0.0832789173894654	0.270061843484355
2	32913999	32916810	5	gain	-	-1	germline	1	0.0832802890166665	0.270064225601556
2	34471293	34505025	1	loss	A	-1	germline	1	3.6656618315829e-08	4.6476008597196e-09
2	89772096	89783340	4	gain	-	-1	germline	1	0.000532430336969305	0.00067128341563627
2	89783340	89825505	3	gain	-	-1	somatic	0	9.124388286917e-08	7.78636377596342e-10
2	89825505	89842371	13	gain	-	-1	germline	1	2.210288640727e-05	1.22946565838111e-05
2	89842371	89850804	4	gain	-	-1	germline	1	0.00270197485521858	0.00496084563550603
2	109198917	109201728	6	gain	-	-1	germline	1	0.0832789173894654	0.270061843484355
2	166824417	166827228	4	gain	-	-1	somatic	0	0.0832830323259688	0.27006898988197
2	240149352	240163407	2	neutral	AA	62.7992	somatic	0	0.134198440244458	0.391967032568412
2	240427641	240430452	2	neutral	AA	100	somatic	0	0.112767473773327	0.318022922859949
2	240686253	240689064	2	neutral	AA	100	somatic	0	0.975387954759411	0.95796134066435
2	240784638	240787449	2	neutral	AA	36.3786	somatic	0	0.90994739084321	0.939190197073311
2	241136013	241138824	2	neutral	AA	100	somatic	0	0.57302728272119	0.772095005947769
2	241560474	241605450	2	neutral	AA	11.5438	somatic	0	0.0241124971573857	0.00398003782826517
3	6333183	6338805	2	neutral	AA	100	somatic	0	0.895343816318651	0.913030054144557
3	10232040	10243284	2	neutral	AA	100	somatic	0	0.0173305624576297	0.0145223616700021
3	13127370	13144236	2	neutral	AA	100	somatic	0	0.0793805622181524	0.0801792165970722
3	21208995	21310191	2	neutral	AA	100	somatic	0	0.230921751873047	0.226747309384977
3	22341828	22369938	2	neutral	AA	54.5678	germline	1	0.173084949242961	0.385605778076539
3	25942719	26046726	2	neutral	AA	23.9968	somatic	0	0.0196576670931199	0.100818794448002
3	28736853	28753719	2	neutral	AA	57.0931	somatic	0	0.707886944045217	0.687158845900356
3	45434193	45462303	2	neutral	AA	54.5678	somatic	0	0.0123245793849187	0.0201435517312527
3	48228327	48276114	2	neutral	AA	27.6372	somatic	0	0.145209362973853	0.0733449466266539
3	50853801	50949375	2	neutral	AA	36.4	somatic	0	0.0731570292670862	0.156703211495995
3	53349969	53403378	2	neutral	AA	57.5987	somatic	0	0.980482659682283	0.440561787273075
3	54890397	55118088	2	neutral	AA	15.4788	somatic	0	0.0668634187676973	0.0575888046014768
3	62904558	62924235	2	neutral	AA	54.5679	somatic	0	0.586311245770939	0.701678184171125
3	68020578	68029011	2	neutral	AA	100	somatic	0	0.987695832913928	0.901599446939605
3	72470391	72476013	2	neutral	AA	54.5678	somatic	0	0.217005564845032	0.275587214695679
3	75669309	75672120	6	gain	AAAAAA	1.7274	germline	1	0.0832775457805642	0.270059461382492
3	75711474	75866079	2	neutral	AA	1.24394	germline	1	0.00589551037851358	0.0422975271133745
3	76259619	76270863	2	neutral	AA	100	somatic	0	0.0327164836723274	0.1434765586327
3	80006682	80026359	2	neutral	AA	54.8145	somatic	0	0.0076570752838088	0.0100737227105097
3	87472698	87495186	2	neutral	AA	54.5678	somatic	0	0.966664837233417	0.820443420158354
3	87562650	87568272	2	neutral	AA	100	somatic	0	0.766326166240308	0.69289475463564
3	90303375	90668805	2	neutral	AA	1.71311	germline	1	3.41893490810283e-28	0
3	90668805	90713781	1	loss	A	-1	germline	1	3.41125374930653e-11	8.19788681383216e-13
3	94491765	94505820	2	neutral	AA	54.5678	somatic	0	0.1259309451392	0.0861750483859909
3	94817841	94868439	2	neutral	AA	50.1413	somatic	0	0.609626542163611	0.922707480563516
3	95166405	95301333	2	neutral	AA	54.5681	somatic	0	0.0336044786046603	0.0377282467470974
3	96619692	96622503	0	loss	-	-1	germline	1	0.0832662307053618	0.270041596107392
3	99172080	99239544	2	neutral	AA	100	somatic	0	0.811941275743689	0.947438341453923
3	101156646	101170701	2	neutral	AA	93.3228	somatic	0	0.719198326182851	0.763876054428445
3	108201012	108220689	2	neutral	AA	100	somatic	0	0.334263610409298	0.572185137786892
3	111054177	111099153	2	neutral	AA	72.4649	somatic	0	0.538812455042771	0.600936676653114
3	127549125	127565991	2	neutral	AA	100	somatic	0	0.479054926864734	0.621906801679852
3	135299052	135307485	2	neutral	AA	100	somatic	0	0.641743891113739	0.746479940655029
3	139074225	139113579	2	neutral	AA	100	somatic	0	0.0460054210998328	0.299444067614503
3	139113579	139116390	0	loss	-	-1	somatic	0	0.0832662307053618	0.270041596107392
3	142273143	142275954	2	neutral	AA	100	somatic	0	0.639822188299823	0.814768899402666
3	144929538	144977325	2	neutral	AA	54.5678	somatic	0	0.364165389720107	0.59084268401794
3	148836828	148850883	2	neutral	AA	100	somatic	0	0.864130421706639	0.986190318740253
3	152406798	152460207	2	neutral	AA	61.8949	somatic	0	0.00229936277290401	0.00506697186285132
3	153463734	153469356	2	neutral	AA	100	somatic	0	0.340551791472435	0.292317138015653
3	156111696	156125751	2	neutral	AA	100	somatic	0	0.881715258734603	0.995434958147333
3	157030893	157036515	2	neutral	AA	100	somatic	0	0.966246377995447	0.875024313323311
3	161840514	161851758	2	neutral	AA	100	somatic	0	0.502047477386193	0.808962314795892
3	162793443	162908694	1	loss	A	-1	germline	1	7.9058042943355e-25	0
3	166801929	166815984	3	gain	AAB	3.74624	germline	1	0.000107830878749849	9.11204306103253e-05
3	176789412	176795034	2	neutral	AA	100	somatic	0	0.88326528388724	0.996486340879583
3	178684026	178698081	2	neutral	AA	100	somatic	0	0.29387950678975	0.278445094046181
3	188359488	188410086	2	neutral	AA	30.1737	somatic	0	0.125366748015303	0.154525597870613
3	191347581	191356014	1	loss	A	-1	germline	1	0.0134160373483516	0.0566892170492823
3	195530349	195544404	2	neutral	AA	100	somatic	0	0.0994004028250002	0.133315942092049
3	197725740	197736984	2	neutral	AA	27.2839	somatic	0	0.665542317693855	0.755564796533067
4	10209552	10232040	1	loss	A	-1	germline	1	7.42766043160598e-06	1.29648265090321e-06
4	10389456	10400700	1	loss	A	-1	germline	1	0.00160356960302535	0.0015910234763955
4	18732504	18926463	1	loss	A	-1	germline	1	1.18485830374324e-42	0
4	40292874	40295685	4	gain	-	-1	germline	1	0.0832850898559839	0.270072563132541
4	68518125	68622132	1	loss	A	-1	germline	1	4.30269509381459e-15	0
4	70620753	70623564	0	loss	-	-1	somatic	0	0.0832662307053618	0.270041596107392
4	134511972	134514783	0	loss	-	-1	germline	1	0.0832672592970965	0.270041596107392
4	172502637	172513881	1	loss	A	-1	germline	1	0.0203149332975262	0.0547808498954153
5	413217	416028	4	gain	AAAB	21.6762	germline	1	0.0832830323259688	0.27006898988197
5	626853	902331	2	neutral	AA	4.0568	somatic	0	0.429662230969478	0.622289983791808
5	2670450	2678883	2	neutral	AA	54.5683	somatic	0	0.0821335238323215	0.0867709031581887
5	2923440	2929062	2	neutral	AA	100	somatic	0	0.488509840767179	0.828742223742388
5	3311358	3333846	2	neutral	AA	7.32068	somatic	0	0.159738104184158	0.266547414775761
5	10347291	10372590	2	neutral	AA	100	somatic	0	0.471060497557943	0.482666220895009
5	12545493	12562359	2	neutral	AA	54.5678	somatic	0	0.098157273550472	0.119142980607512
5	13776711	13793577	2	neutral	AA	54.5984	somatic	0	0.199434703212694	0.107324676878439
5	14510382	14527248	2	neutral	AA	54.5976	somatic	0	0.0365919059034203	0.0305724953960265
5	17267973	17388846	2	neutral	AA	24.6243	somatic	0	0.00843560874138907	0.00082833086148093
5	20227956	20247633	2	neutral	AA	100	somatic	0	0.0160268477899713	0.0187427092213407
5	23615211	23620833	2	neutral	AA	100	somatic	0	0.214570236008038	0.360659889298019
5	28627224	28632846	2	neutral	AA	100	somatic	0	0.356478690421689	0.572692548537526
5	36275955	36320931	2	neutral	AA	54.6231	somatic	0	0.00699583720515267	0.00793906502815278
5	50151051	50229759	2	neutral	AA	100	somatic	0	4.00495392499884e-10	8.3867357503209e-12
5	55430109	55640934	2	neutral	AA	100	somatic	0	0.00429194589750578	0.00236506695981442
5	57251637	57262881	2	neutral	AA	54.5679	somatic	0	0.446351763115517	0.802667294994963
5	60087936	60146967	2	neutral	AA	100	somatic	0	3.78127092411277e-08	7.15431176967485e-07
5	62446365	62474475	2	neutral	AA	43.5858	somatic	0	0.642144455430004	0.890211897257073
5	71919435	71925057	2	neutral	AA	100	somatic	0	0.305539590640453	0.377725070298758
5	73347423	73367100	2	neutral	AA	100	somatic	0	0.624281756991975	0.670332421385392
5	77423373	77589222	2	neutral	AA	29.7347	somatic	0	0.000574406930395476	0.00887240808217515
5	85892916	86002545	2	neutral	AA	66.5085	somatic	0	0.242726492911333	0.473402287575157
5	86556312	86592855	2	neutral	AA	69.761	somatic	0	0.554639376132796	0.474658791266305
5	92344161	92346972	0	loss	-	-1	germline	1	0.0832662307053618	0.270041596107392
5	92397570	92411625	2	neutral	AA	36.7176	somatic	0	0.643459545917381	0.89432104561818
5	120043755	120049377	1	loss	A	-1	germline	1	0.0146950832051344	0.0377978028099618
5	125131665	125151342	2	neutral	AA	42.4916	somatic	0	0.424052784502354	0.122971514815915
5	125539260	125558937	2	neutral	AA	54.5686	somatic	0	0.6095920104447	0.658321186033106
5	140842344	140859210	1	loss	A	-1	germline	1	0.000260077481153001	0.000218163236669899
5	151945794	151965471	2	neutral	AA	100	germline	1	0.0110586042698743	0.0814977414874336
5	156732927	156749793	2	neutral	AA	100	somatic	0	0.010628525280396	0.0641424182873161
5	165604443	165610065	2	neutral	AA	100	germline	1	0.727126154065748	0.760053587934876
5	174641808	174653052	2	neutral	AA	37.5732	somatic	0	0.530229984509406	0.691433077203061
5	181045266	181048077	4	gain	AAAB	100	germline	1	0.0832830323259688	0.27006898988197
6	255801	382296	3	gain	-	-1	germline	1	3.14588032742758e-29	0
6	32489538	32601978	0	loss	-	-1	germline	1	2.69546150457215e-13	1.31006316905768e-14
6	32601978	32666631	1	loss	A	-1	germline	1	0.000182689912090597	7.68088686439183e-05
6	35786841	35798085	5	gain	-	-1	germline	1	0.000532373165542698	0.000671235650630986
6	55961388	55981065	1	loss	A	-1	germline	1	1.14882931594157e-05	6.05824764798868e-06
6	95967540	95992839	2	neutral	AA	36.379	somatic	0	0.684173162635709	0.929119012851737
6	96673101	96675912	3	gain	-	-1	somatic	0	0.084066481700656	0.271428115313184
6	97839666	97879020	2	neutral	AA	54.5728	somatic	0	0.296868738112722	0.209994946027478
6	98744808	98750430	2	neutral	AA	100	somatic	0	0.0380803606536824	0.107417447530981
6	99478479	99481290	2	neutral	AA	100	somatic	0	0.211998007267922	0.449827029936333
6	100771539	100853058	2	neutral	AA	54.8372	germline	1	0.979661556408904	0.977521274884642
6	100883979	100937388	2	neutral	AA	100	germline	1	0.829004306289997	0.876765829880767
6	103290195	103315494	1	loss	A	-1	germline	1	5.28033612933813e-06	8.83513044502848e-07
6	103619082	103638759	2	neutral	AA	100	somatic	0	0.0562008739896652	0.166461795337335
6	104647908	104653530	2	neutral	AA	62.11	somatic	0	0.295701743681478	0.765028850379171
6	104810946	104816568	1	loss	A	-1	germline	1	0.0206375292191221	0.0562087286122129
6	108923439	108926250	2	neutral	AA	100	somatic	0	0.235491463172454	0.476840463143653
6	112569306	112577739	2	neutral	AA	100	somatic	0	0.194299417444857	0.240628176449347
6	112844784	112861650	2	neutral	AA	100	somatic	0	0.318553154179858	0.152454553712552
6	120648120	120650931	2	neutral	AA	54.5678	germline	1	0.197870405742533	0.432954976394426
6	122480892	122483703	2	neutral	AA	100	somatic	0	0.236852768288582	0.47837373155026
6	125019225	125022036	2	neutral	AA	100	somatic	0	0.403543381753358	0.642136908316996
6	130902648	131017899	2	neutral	AA	100	somatic	0	0.753778172238572	0.841843904278487
6	134601924	134607546	2	neutral	AA	3.30867	somatic	0	0.0575873272493485	0.152555808639811
6	149826300	149848788	2	neutral	AA	100	somatic	0	0.174459063059778	0.294057019568456
6	150087723	150113022	2	neutral	AA	56.7935	somatic	0	0.0697928121683961	0.0632891883917288
6	150714576	150717387	2	neutral	AA	100	somatic	0	0.964708678490046	0.955186602785119
6	152567025	152575458	2	neutral	AA	100	somatic	0	0.292707826446328	0.60883315425788
6	153407514	153432813	2	neutral	AA	0.363074	somatic	0	0.404843941905461	0.475930152787554
6	155032272	155035083	2	neutral	AA	100	somatic	0	0.183675404176949	0.41548417816636
6	157311993	157314804	7	gain	AAAAABB	2.95851	germline	1	0.0832754884015243	0.270055888258455
6	157525629	157542495	2	neutral	AA	87.0377	somatic	0	0.134253479451628	0.165888091042882
6	158287410	158298654	2	neutral	AA	54.571	somatic	0	0.0980166965273992	0.0684885755555941
6	158346441	158357685	2	neutral	AA	7.08957	somatic	0	0.366616111107257	0.744649152880433
6	160198890	160227000	2	neutral	AA	11.5393	somatic	0	0.859356312288135	0.969499452814576
6	163178550	163198227	2	neutral	AA	100	somatic	0	0.461503004070569	0.390299745347325
6	163257258	163302234	2	neutral	AA	36.3786	somatic	0	0.462762715999625	0.379340926703105
6	163926276	163931898	2	neutral	AA	22.9883	somatic	0	0.716827566178902	0.967162779798538
6	166295949	166315626	2	neutral	AA	100	somatic	0	0.0847426365605269	0.234889054533112
6	166919991	166931235	2	neutral	AA	100	somatic	0	0.414502282214827	0.591498909760791
6	167684583	167709882	2	neutral	AA	22.576	somatic	0	0.863942748899082	0.529702552990835
6	168269271	168286137	2	neutral	AA	100	somatic	0	0.682766938247193	0.474010160476542
6	168719031	168721842	2	neutral	AA	100	somatic	0	0.355174035236145	0.598795322434211
6	170037390	170186373	2	neutral	AA	42.9165	somatic	0	0.0447260883814844	0.0725746899727702
7	2462436	2546766	2	neutral	AA	27.2842	somatic	0	0.509604699503576	0.550552199655769
7	10580604	10639635	2	neutral	AA	43.6254	somatic	0	0.0367251771302956	0.106025562865488
7	21003792	21023469	2	neutral	AA	54.5756	somatic	0	0.816397862851134	0.861699622047027
7	37526850	37535283	2	neutral	AA	100	somatic	0	0.352236298815766	0.645414787358776
7	40399692	40441857	1	loss	A	-1	germline	1	4.45863276756469e-10	4.18420853520729e-12
7	54595242	54640218	2	neutral	AA	100	somatic	0	0.40851239906524	0.453955952962912
7	57484950	58061205	2	neutral	AA	0.880037	somatic	0	2.84368355027774e-23	0
7	58061205	62359224	2	neutral	AA	0.589425	somatic	0	0.117721888934476	0.000680964013135554
7	62359224	62401389	2	neutral	AA	-1	somatic	0	NA	NA
7	62401389	62407011	3	gain	-	-1	germline	1	0.0143137781168635	0.0366434358984616
7	62407011	62437932	2	neutral	AA	-1	somatic	0	NA	NA
7	62437932	62572860	2	neutral	AA	5.73169	somatic	0	5.19675801309105e-08	3.14477333063223e-10
7	73816860	73844970	2	neutral	AA	37.1378	somatic	0	0.0662925818819045	0.040239317863625
7	94570473	94615449	2	neutral	AA	54.5678	somatic	0	0.715682139618102	0.741814508313434
7	96912036	96917658	1	loss	A	-1	germline	1	0.0200521885912755	0.0543759745800836
7	100948632	100957065	3	gain	AAA	4.39589	germline	1	0.00270331646231129	0.00496455331730261
7	100957065	100959876	13	gain	AAAAAAAAAAAAA	5.00537	germline	1	0.083272745293519	0.270051124146754
7	100959876	100971120	4	gain	AABB	0.501858	germline	1	0.000532575196855725	0.000671522288464343
7	119192022	119194833	0	loss	-	-1	germline	1	0.0832672592970965	0.270041596107392
7	119695191	119737356	2	neutral	AA	27.2888	somatic	0	0.276792378125373	0.231756400974325
7	126003075	126056484	2	neutral	AA	54.5678	somatic	0	0.0997768821952432	0.200860687089702
7	129842901	129851334	2	neutral	AA	100	germline	1	0.504756363704211	0.65562458150334
7	133772679	133786734	2	neutral	AA	54.5678	somatic	0	0.330017388832914	0.325064762375201
7	143847303	143850114	5	gain	AAABB	67.4592	germline	1	0.0832809748371295	0.270065416665908
7	146020206	146037072	1	loss	A	-1	germline	1	7.07155261603094e-05	3.55709812598359e-05
7	152401176	152406798	9	gain	AAAAAAABB	5.18611	germline	1	0.0143091243668151	0.0366362662359814
7	152406798	152409609	4	gain	AAAB	5.80965	germline	1	0.0832830323259688	0.27006898988197
7	152415231	152471451	2	neutral	AA	5.10978	somatic	0	0.000276700288285272	0.000132427964372295
7	155147523	155352726	2	neutral	AA	3.8618	germline	1	0.322628591883911	0.458337543450462
7	158090640	158174970	2	neutral	AA	6.85105	somatic	0	5.93779730828597e-05	6.02848305597536e-06
7	158849610	158855232	1	loss	A	-1	somatic	0	0.030037146571211	0.0574134974208099
8	25113474	25133151	1	loss	A	-1	germline	1	1.77455829082136e-05	8.13307030878008e-06
8	39376488	39528282	1	loss	A	-1	germline	1	9.35129737960563e-31	0
8	40916916	40922538	0	loss	-	-1	germline	1	0.0143069602867098	0.0366330077042536
8	43235991	43238802	6	gain	-	-1	germline	1	0.0832775457805642	0.270059461382492
8	43238802	43241613	12	gain	-	-1	germline	1	0.083272745293519	0.270051124146754
8	46614813	46628868	3	gain	AAB	8.28642	germline	1	0.000107766104551372	9.09746753656737e-05
8	51362592	51373836	2	neutral	AA	54.8373	somatic	0	0.227458448579065	0.267535948544186
8	53029515	53032326	2	neutral	AA	100	somatic	0	0.916384120590886	0.941216561920465
8	54423771	54454692	2	neutral	AA	54.5681	somatic	0	0.0522299746979615	0.023901741052531
8	62856771	62870826	2	neutral	AA	79.4749	somatic	0	0.824453726900652	0.999945609776573
8	63056352	63123816	2	neutral	AA	38.0643	somatic	0	0.00934161000406054	0.0326888493591513
8	64641756	64669866	2	neutral	AA	100	somatic	0	0.188688824174921	0.101618306578236
8	80386167	80388978	2	neutral	AA	54.5678	somatic	0	0.410673459212345	0.648259623929807
8	80512662	80515473	2	neutral	AA	100	somatic	0	0.205752320943935	0.442441673726833
8	82716486	82792383	2	neutral	AA	51.4348	somatic	0	0.122354958898898	0.0763112290506105
8	84942798	84948420	2	neutral	AA	100	somatic	0	0.746042544437085	0.882843401980209
8	85561218	85642737	2	neutral	AA	49.8729	somatic	0	0.0137258913357322	0.0215375863294108
8	85828263	85831074	4	gain	AAAA	75.4697	germline	1	0.0832850898559839	0.270072563132541
8	85831074	85850751	2	neutral	AA	100	somatic	0	0.446351898386807	0.530375637873401
8	86876766	86899254	2	neutral	AA	100	somatic	0	0.289686844512509	0.569354398542429
8	89358879	89361690	2	neutral	AA	100	somatic	0	0.782256875008406	0.889880525822209
8	89566893	89595003	2	neutral	AA	54.5913	somatic	0	0.442992989588771	0.680761839438188
8	95053965	95056776	2	neutral	AA	100	somatic	0	0.387766478174292	0.628359258513041
8	96920469	96928902	2	neutral	AA	100	germline	1	0.0147685896781312	0.0243248212663514
8	97032909	97035720	2	neutral	AA	54.5678	somatic	0	0.619922425138391	0.802547029394483
8	99104616	99172080	2	neutral	AA	30.0965	somatic	0	0.115672359836851	0.295008262037172
8	100451085	100456707	2	neutral	AA	100	somatic	0	0.635863512200416	0.839879059859871
8	102421596	102477816	2	neutral	AA	19.7717	germline	1	9.06111336254571e-06	7.63387555813289e-06
8	106233312	106396350	2	neutral	AA	20.1831	somatic	0	0.00314386135653706	0.00639293307677935
8	108507411	108510222	2	neutral	AA	100	somatic	0	0.648363894467819	0.819839273345536
8	123419766	123447876	2	neutral	AA	36.5775	somatic	0	0.00465477809830555	0.00658963019287961
8	127405764	127408575	2	neutral	AA	100	somatic	0	0.335511434510505	0.580305022981095
8	128428968	128431779	2	neutral	AA	100	somatic	0	0.919009900437955	0.942031559575191
8	135054495	135088227	2	neutral	AA	100	somatic	0	0.425613337699738	0.782169733964909
8	138739716	138759393	2	neutral	AA	19.4661	somatic	0	0.414121892169086	0.781902238250662
8	138958974	138973029	2	neutral	AA	100	germline	1	0.366834926643354	0.526904405994311
8	142357473	142433370	2	neutral	AA	23.1861	somatic	0	0.441705173028735	0.379507327202421
8	144122781	144125592	2	neutral	AA	100	germline	1	0.553861814420562	0.758999032492453
8	144125592	144128403	5	gain	AAAAB	100	germline	1	0.0832802890166665	0.270064225601556
8	144184623	144190245	2	neutral	AA	100	somatic	0	0.0789740796483687	0.180242446176076
8	145053222	145070088	3	gain	AAB	8.33033	somatic	0	5.51917860166927e-05	0.000326261520093518
9	15814686	15817497	0	loss	-	-1	germline	1	0.083274116838372	0.270053506194929
9	22496433	22502055	1	loss	A	-1	germline	1	0.0156401357039709	0.0388978982598372
9	23362221	23376276	1	loss	A	-1	germline	1	0.00033482248768134	0.00025878439357685
9	40908483	40914105	5	gain	-	-1	germline	1	0.0143111805103695	0.0366398509137847
9	40914105	40916916	7	gain	-	-1	germline	1	0.0832754884015243	0.270055888258455
9	42387069	42389880	6	gain	AAABBB	64.4421	germline	1	0.0832796032007785	0.270063034541038
9	68863878	68866689	2	neutral	AA	54.5678	somatic	0	0.216927090234894	0.455601904624627
9	80352435	80360868	2	neutral	AA	100	somatic	0	0.300209906325329	0.435175959980944
9	82171152	82224561	2	neutral	AA	100	somatic	0	0.763074296997439	0.340432233868642
9	83624439	84082632	2	neutral	AA	31.1727	somatic	0	0.755784846852824	0.657468700028712
9	90131904	90137526	2	neutral	AA	100	somatic	0	0.119831401594795	0.15672868233091
9	94778487	94843140	2	neutral	AA	27.4332	somatic	0	0.169037772158244	0.372820665555413
9	96628125	96656235	2	neutral	AA	100	somatic	0	0.00462206477682477	0.00137480591880734
9	97507968	97510779	2	neutral	AA	100	somatic	0	0.424030049466392	0.659591043372525
9	98545227	98550849	1	loss	A	-1	germline	1	0.0270114055205734	0.0544779858065892
9	106247367	106297965	2	neutral	AA	56.5723	somatic	0	0.078182460444898	0.236958022884885
9	108541143	108659205	2	neutral	AA	100	somatic	0	2.52300944056936e-06	1.7551046108677e-06
9	118705719	118719774	2	neutral	AA	38.7824	somatic	0	0.344662553635011	0.361539492526329
9	121131612	121134423	2	neutral	AA	100	somatic	0	0.122783228214332	0.333085740163205
9	121941180	121980534	2	neutral	AA	54.5678	somatic	0	0.854169914036964	0.721720079880478
9	122795724	122798535	2	neutral	AA	100	somatic	0	0.447790749388589	0.679224621547839
9	123445065	123501285	2	neutral	AA	100	somatic	0	0.00131537533380628	0.0151670967893514
9	124338963	124378317	2	neutral	AA	54.6883	somatic	0	7.55060335764841e-05	0.00128334409777553
9	124954572	125390277	2	neutral	AA	100	somatic	0	1.53177201326005e-15	5.39679412270289e-13
9	128589195	128592006	2	neutral	AA	100	somatic	0	0.13153386635207	0.345820480553821
9	129424062	129429684	2	neutral	AA	2.4165	somatic	0	0.132311810014213	0.402022599671375
9	129429684	129440928	3	gain	AAB	0.516433	germline	1	0.000533796527189246	0.000674466949800889
9	131844333	131847144	2	neutral	AA	100	somatic	0	0.616871231763559	0.800645896493938
9	132319392	132327825	2	neutral	AA	54.5678	somatic	0	0.0390306670569258	0.045314625624871
9	134455752	134514783	2	neutral	AA	7.35278	somatic	0	0.0386701052121899	0.115789986146538
9	135321540	135327162	1	loss	A	-1	germline	1	0.0179603285796621	0.0478164517718525
9	137325783	137328594	4	gain	AAAB	25.0919	germline	1	0.0832830323259688	0.27006898988197
9	137530986	137539419	2	neutral	AA	54.5678	somatic	0	0.921909359338946	0.846195029108874
9	137918904	137961069	2	neutral	AA	9.00263	somatic	0	0.0972233951253245	0.170036593421015
10	75897	89952	2	neutral	AA	10.7018	somatic	0	0.0308868010341177	0.0287771840188565
10	837678	879843	2	neutral	AA	100	somatic	0	0.523641264909112	0.372687118890036
10	1416744	1444854	2	neutral	AA	53.6996	somatic	0	0.450795014297345	0.262365125252861
10	5846880	5852502	1	loss	A	-1	germline	1	0.0196344360881088	0.0530534865827426
10	15480177	15516720	2	neutral	AA	100	somatic	0	0.485816957009363	0.574064784037001
10	19615158	19657323	2	neutral	AA	100	somatic	0	0.917250977572518	0.604916072290292
10	26569572	26682012	2	neutral	AA	0.195804	somatic	0	0.0571406644724001	0.151956574825809
10	26926569	27002466	2	neutral	AA	1.05285	somatic	0	0.0868415031622902	0.0243860456702075
10	30251982	30319446	2	neutral	AA	27.3176	somatic	0	0.793362470044942	0.626999423887603
10	31154313	31157124	1	loss	A	-1	somatic	0	0.083413423859889	0.270295363872331
10	38485401	38524755	2	neutral	AA	2.11668	somatic	0	0.300528544458708	0.231047696717076
10	38524755	38527566	6	gain	AAAAAA	4.52772	germline	1	0.0832775457805642	0.270059461382492
10	38575353	38836776	2	neutral	AA	1.87868	somatic	0	0.0119676014410238	0.00105693619307456
10	41836113	41841735	2	neutral	AA	6.33821	germline	1	0.205690635239818	0.478716589113997
10	41855790	41864223	9	gain	AAAAAABBB	4.15714	germline	1	0.00270057470885031	0.00495852962350896
10	41881089	41889522	31	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2.31764	germline	1	0.014307284880319	0.0366339852371464
10	46328091	46558593	4	gain	AABB	0.757336	somatic	0	7.49594830697362e-11	1.22390986234677e-12
10	53026704	53029515	0	loss	-	-1	germline	1	0.0832789173894654	0.270061843484348
10	56754090	56768145	1	loss	A	-1	germline	1	0.000340439462130303	0.000265564176641697
10	64979076	65024052	2	neutral	AA	36.3843	germline	1	0.90290612566186	0.702743537288545
10	65546898	65549709	0	loss	-	-1	germline	1	0.083268630768754	0.270043978094225
10	65878596	65976981	2	neutral	AA	100	somatic	0	0.645909605330236	0.767427465990009
10	77032644	77145084	2	neutral	AA	72.2286	germline	1	0.00178350354159409	0.0107613732467227
10	98146065	98171364	2	neutral	AA	100	somatic	0	0.0693214580347586	0.12730066301255
10	98570526	98595825	2	neutral	AA	100	somatic	0	0.636005772678105	0.324698258522013
10	105508074	105558672	2	neutral	AA	36.7139	somatic	0	0.615571830689989	0.879200024349267
10	115754169	115821633	2	neutral	AA	54.5678	germline	1	0.653044204827926	0.642506823636478
10	117086583	117137181	2	neutral	AA	100	somatic	0	0.0159865540495129	0.0695123120923035
10	117190590	117345195	2	neutral	AA	31.2452	somatic	0	9.22599214214642e-06	0.000143006345268315
10	128462700	128465511	6	gain	AAABBB	11.6841	germline	1	0.0832775457805642	0.270059461382492
10	131622264	131625075	0	loss	-	-1	somatic	0	0.0832864615655362	0.270074945318754
10	132485241	132513351	2	neutral	AA	26.1225	somatic	0	0.65265994598782	0.926049620550528
11	18923652	18940518	3	gain	-	-1	germline	1	2.21416470415553e-05	1.23150132618211e-05
11	31370760	31376382	1	loss	A	-1	germline	1	0.0185473435413032	0.0496512792757605
11	37743297	37746108	11	gain	-	-1	somatic	0	0.0832734310636581	0.270052315168927
11	54921318	54932562	1	loss	A	-1	germline	1	0.0010446195132396	0.00156895200190887
11	55188363	55205229	1	loss	A	-1	germline	1	0.000729477070649757	0.00134411864453843
11	61341642	61364130	2	neutral	AA	54.5678	somatic	0	0.847578003972146	0.912781133566632
11	63424593	63430215	3	gain	AAB	17.1926	germline	1	0.014319840816166	0.0366551707214282
11	64236972	64318491	2	neutral	AA	38.9214	somatic	0	0.0394776752410912	0.0868455118288677
11	71480919	71528706	2	neutral	AA	5.74502	germline	1	0.251105458008522	0.459021594293172
11	106697127	107115966	2	neutral	AA	84.4001	somatic	0	4.16278932513365e-05	3.00017523503504e-05
11	110112492	110154657	2	neutral	AA	54.5678	somatic	0	0.147502449825608	0.335457293891452
11	110283963	110328939	2	neutral	AA	100	somatic	0	0.590091094753189	0.604828045909345
11	120420429	120437295	2	neutral	AA	54.5678	somatic	0	0.614771482758818	0.94377785123458
11	123667134	123692433	2	neutral	AA	71.2533	somatic	0	0.00575024337844578	0.0140692565546414
11	128066349	128125380	2	neutral	AA	100	somatic	0	0.0227539280569434	0.0271493783875305
12	2254422	2257233	5	gain	AAABB	37.862	germline	1	0.0832809748371295	0.270065416665908
12	28542894	28565382	2	neutral	AA	100	somatic	0	0.296432555573085	0.110270696810127
12	33234453	33242886	1	loss	A	-1	germline	1	0.00320836785920499	0.00564446360175408
12	37599936	37754541	2	neutral	AA	5.6331	germline	1	1.09805122951012e-16	0
12	39710997	39713808	1	loss	A	-1	germline	1	0.0833138995999574	0.270122592264069
12	40104537	40132647	2	neutral	AA	54.5678	somatic	0	0.161407461301159	0.352482944531889
12	57445596	57459651	2	neutral	AA	54.5678	somatic	0	0.11976898172734	0.288174337107907
12	60127290	60132912	1	loss	A	-1	germline	1	0.0204035491269361	0.0554768227782897
12	71208252	71211063	0	loss	-	-1	germline	1	0.0832734310636581	0.270052315168921
12	81072051	81229467	2	neutral	AA	25.0079	somatic	0	0.169423058545556	0.0712192513800259
12	82637778	82640589	9	gain	-	-1	somatic	0	0.0832748026176607	0.270054697224778
12	93454506	93482616	2	neutral	AA	100	somatic	0	0.0496770569374683	0.0582284431915194
12	95003367	95028666	2	neutral	AA	100	somatic	0	0.0852369804108319	0.14708554721237
12	99399771	99408204	1	loss	A	-1	germline	1	0.00577928790438688	0.00910291099262428
12	106120872	106129305	2	neutral	AA	100	somatic	0	0.424278169913021	0.786757739110487
12	122961573	123121800	2	neutral	AA	74.0795	somatic	0	1.85261860613207e-06	1.07946767990974e-06
12	124999548	125117610	2	neutral	AA	100	somatic	0	6.26683243356206e-05	3.15878216472498e-05
12	130644036	130646847	4	gain	AABB	100	germline	1	0.0832844040080704	0.270071372045183
12	131790924	131804979	2	neutral	AA	18.83	somatic	0	0.206605626971549	0.555859714609602
12	132263172	132282849	2	neutral	AA	22.9452	somatic	0	0.179444173840923	0.133592264821396
13	22018563	22024185	1	loss	A	-1	germline	1	0.0197485085330741	0.0534209225763794
13	35750298	35761542	3	gain	-	-1	germline	1	0.000533059600360905	0.000672095908420101
13	37495929	37512795	1	loss	A	-1	germline	1	9.4673349297094e-05	4.99284382982079e-05
13	38482590	38485401	0	loss	-	-1	germline	1	0.0832789173894654	0.270061843484348
13	45422949	45425760	3412	gain	-	-1	somatic	0	0.0832652021239198	0.270038023155907
13	50493993	50502426	1	loss	A	-1	germline	1	0.00782813711345738	0.0104454941809581
13	62047203	62052825	1	loss	A	-1	germline	1	0.0178063040612421	0.0442938364714263
13	63028242	63064785	3	gain	-	-1	germline	1	2.50075746170891e-06	5.56006352617766e-05
13	63064785	63067596	5	gain	-	-1	germline	1	0.0832823464917806	0.270067798806114
13	63649473	63663528	1	loss	A	-1	germline	1	0.00038065920602194	0.000264400462031134
13	64768251	64771062	1	loss	A	-1	germline	1	0.0832926344849961	0.270085665346545
13	71902569	71908191	1	loss	A	-1	germline	1	0.0201490805298455	0.0546774278548342
13	80105067	80113500	1	loss	A	-1	somatic	0	0.00760385669202789	0.00958914136134115
13	82589991	82598424	1	loss	A	-1	somatic	0	0.00679534732932544	0.0102892682764298
13	89294226	89299848	2	neutral	AA	100	somatic	0	0.922232892501678	0.993819913931808
13	92034951	92037762	2	neutral	AA	100	somatic	0	0.593711390814693	0.785817144207277
13	98601447	98607069	1	loss	A	-1	germline	1	0.0199288415164862	0.0533165560916387
13	101240976	101243787	0	loss	-	-1	germline	1	0.0832844040080704	0.270071372045176
13	101255031	101302818	2	neutral	AA	54.5678	somatic	0	0.526034370774046	0.868938571396028
13	102281046	102283857	2	neutral	AA	100	somatic	0	0.702663968334224	0.850534683256838
13	112068948	112108302	2	neutral	AA	62.8863	somatic	0	0.0304315236902678	0.0309524878134723
13	113176482	113190537	2	neutral	AA	41.4731	somatic	0	0.120016881501539	0.133536499169102
13	114039459	114053514	2	neutral	AA	15.0473	somatic	0	0.209438833695181	0.471972902711243
13	114154710	114157521	1	loss	A	-1	germline	1	0.0927521753446486	0.286142312247816
14	0	16092975	4	gain	AAAB	-1	germline	1	NA	NA
14	16092975	16095786	7	gain	-	-1	germline	1	0.0832754884015243	0.270055888258455
14	16095786	18487947	4	gain	AAAB	-1	germline	1	NA	NA
14	18487947	18490758	2	neutral	AA	100	somatic	0	0.164399233568083	0.39083136083188
14	18490758	18659418	4	gain	AAAB	-1	germline	1	NA	NA
14	18659418	18662229	4	gain	AAAB	6.5828	germline	1	0.0832850898559839	0.270072563132541
14	18662229	18684717	4	gain	AAAB	-1	germline	1	NA	NA
14	18684717	18693150	1	loss	A	-1	somatic	0	0.0150079444897869	0.038684826879567
14	18693150	19727598	4	gain	AAAB	-1	germline	1	NA	NA
14	19727598	19955289	4	gain	AAAB	0.762597	germline	1	2.71271057597e-25	0
14	21484473	21487284	0	loss	-	-1	germline	1	0.0832857757084725	0.270073754223727
14	36517701	36573921	2	neutral	AA	100	germline	1	0.662254162613504	0.843604949931536
14	49021029	49023840	0	loss	-	-1	somatic	0	0.0832830323259688	0.270068989881963
14	51654936	51685857	2	neutral	AA	100	somatic	0	0.0625140038744235	0.170066155035484
14	60565806	60585483	2	neutral	AA	54.8373	somatic	0	0.396974940175391	0.798077860756718
14	73651011	73780317	2	neutral	AA	67.431	somatic	0	0.169843518200344	0.0739675362192471
14	83259009	83278686	2	neutral	AA	100	somatic	0	0.131205605767852	0.259335539472821
14	90272454	90278076	2	neutral	AA	100	somatic	0	0.949509348397536	0.998599996615996
14	92372271	92512821	2	neutral	AA	72.3905	germline	1	1.43798506987183e-08	2.44738666177469e-06
14	106865787	106879842	3	gain	AAB	9.64832	somatic	0	0.000131078829743666	0.000150153609929204
15	0	17079636	5	gain	-	-1	germline	1	NA	NA
15	17079636	17082447	7	gain	-	-1	germline	1	0.0832754884015243	0.270055888258455
15	17082447	20340396	5	gain	-	-1	germline	1	0.0372287949519176	0.0771256900054655
15	20340396	20343207	6	gain	-	-1	germline	1	0.0832789173894654	0.270061843484355
15	20343207	22220955	5	gain	-	-1	somatic	0	1.97584938174009e-11	1.87516668859189e-13
15	22220955	22271553	4	gain	AAAB	11.0825	somatic	0	9.65445353419051e-07	2.25695808153681e-07
15	23485905	23494338	2	neutral	AA	54.5678	somatic	0	0.649031281807524	0.911151334907433
15	34437561	34519080	1	loss	A	-1	germline	1	1.64900272892802e-17	0
15	35145933	35202153	2	neutral	AA	100	germline	1	0.0190546874743581	0.0603974330384665
15	37864170	37881036	2	neutral	AA	100	germline	1	0.413150162872226	0.133331276260533
15	38339229	38367339	2	neutral	AA	100	somatic	0	0.0844542753920433	0.0619045207311003
15	40526187	40593651	2	neutral	AA	100	somatic	0	0.269978527929249	0.599706646448927
15	40722957	40762311	2	neutral	AA	36.3786	somatic	0	0.0983143735365798	0.0411813525921895
15	49943037	50075154	2	neutral	AA	36.3915	germline	1	2.1472526008082e-15	1.11566311744582e-12
15	56498289	56509533	1	loss	A	-1	germline	1	0.00167589349064219	0.0015971026436371
15	59739372	59764671	2	neutral	AA	42.3297	somatic	0	0.941119963961923	0.74106929839447
15	60017661	60127290	2	neutral	AA	54.5678	germline	1	0.169757826022411	0.1782140157352
15	63424593	63475191	2	neutral	AA	16.3245	germline	1	0.629795287366045	0.531673520356706
15	72183669	72386061	2	neutral	AA	100	somatic	0	0.00119202908778454	0.00553387053197241
15	76591317	76602561	1	loss	A	-1	germline	1	0.00156067456751203	0.0015869648805561
15	78629292	78789519	2	neutral	AA	11.4506	somatic	0	0.128264272027805	0.259625650776665
16	913575	958551	2	neutral	AA	10.3521	somatic	0	0.928676533985626	0.450634002491313
16	1023204	1026015	5	gain	AAAAA	3.08295	germline	1	0.0832816606621676	0.270066607734094
16	4258665	4581930	2	neutral	AA	21.904	germline	1	0.000286964774717953	0.00164437567086984
16	6462489	6499032	2	neutral	AA	100	somatic	0	0.272674479000852	0.434497612699181
16	7378875	7390119	2	neutral	AA	54.5678	somatic	0	0.922669705242471	0.938269417711593
16	8160333	8168766	2	neutral	AA	54.5683	somatic	0	0.0883144603077002	0.155931672984184
16	13742979	13776711	2	neutral	AA	59.8842	somatic	0	0.197117963138461	0.339009640584632
16	17000928	17068392	2	neutral	AA	36.6832	somatic	0	0.521954052241621	0.772518419399183
16	19317192	19353735	2	neutral	AA	40.5902	somatic	0	0.486506146739205	0.574814022344302
16	21557559	21582858	4	gain	AABB	8.18434	germline	1	2.03930673479654e-07	3.05228124997114e-08
16	22614495	22698825	4	gain	AAAB	6.99719	somatic	0	1.0929478015625e-20	0
16	22949004	23044578	2	neutral	AA	19.6015	somatic	0	0.0476053013255212	0.0715961532859896
16	24444456	24447267	2	neutral	AA	100	somatic	0	0.323234889668113	0.568469467591174
16	24540030	24542841	2	neutral	AA	100	somatic	0	0.728666090771606	0.864111804456679
16	24815508	24821130	2	neutral	AA	54.5693	somatic	0	0.377716346912054	0.339437409496414
16	25031955	25034766	1	loss	A	-1	somatic	0	0.124371452669497	0.335414587581408
16	27336975	27345408	2	neutral	AA	54.5679	somatic	0	0.084736933849585	0.264371206912735
16	34060887	34066509	6	gain	AAAABB	0.93188	germline	1	0.0143104229534764	0.0366385473590786
16	34069320	34083375	2	neutral	AA	9.51689	germline	1	0.488975349603174	0.674604527118708
16	34083375	34086186	5	gain	AAAAA	13.587	germline	1	0.0832809748371295	0.270065416665908
16	34094619	34100241	4	gain	AAAA	1.15648	germline	1	0.0143125874955973	0.0366424581449329
16	34100241	34901376	2	neutral	AA	4.47112	germline	1	4.70823453873016e-18	0
16	34901376	34904187	6	gain	-	-1	somatic	0	0.0832789173894654	0.270061843484355
16	34904187	34957596	2	neutral	AA	0.910758	germline	1	0.959828915491234	0.469668081503433
16	35916147	35944257	2	neutral	AA	100	somatic	0	0.00167989454841809	0.000707908709332683
16	36124161	36126972	3	gain	-	-1	germline	1	0.0832905768039986	0.270082091969445
16	46401177	46403988	59	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	34.1672	germline	1	0.0832665735681297	0.270040405119734
16	46403988	46499562	2	neutral	AA	1.53579	somatic	0	0.0438115274962955	0.0293720905157117
16	49639449	49653504	2	neutral	AA	54.8528	somatic	0	0.364304936812491	0.541685905278854
16	51047760	51067437	2	neutral	AA	56.4136	somatic	0	0.75720904267216	0.769076054691762
16	54373173	54387228	1	loss	A	-1	germline	1	0.000387898991253607	0.000271786209735669
16	55483518	56124426	3	gain	AAB	0.299962	germline	1	7.99168376300845e-100	0
16	56124426	56130048	2	neutral	AA	100	somatic	0	0.0873669121661866	0.282550851627329
16	58943859	58955103	2	neutral	AA	100	somatic	0	0.188072610726854	0.395671257893882
16	60782253	60799119	2	neutral	AA	36.4194	germline	1	0.54599890338559	0.409243925381133
16	60959346	60962157	2	neutral	AA	100	somatic	0	0.521453255403455	0.735949494526752
16	62392956	62407011	2	neutral	AA	100	somatic	0	0.775939938023782	0.653068769302806
16	63042297	63047919	2	neutral	AA	55.1704	somatic	0	0.505571251786386	0.916435648067887
16	63469569	63472380	2	neutral	AA	100	somatic	0	0.949259627011044	0.950982066908602
16	64239783	64242594	2	neutral	AA	100	somatic	0	0.600991238012812	0.79052926455621
16	65768967	65833620	2	neutral	AA	54.578	somatic	0	0.191282858380939	0.177963310397885
16	66994563	67196955	2	neutral	AA	100	somatic	0	0.0251136262225519	0.0916918671444841
16	68481582	68484393	2	neutral	AA	100	somatic	0	0.729048092039618	0.864300298359782
16	70151316	70162560	4	gain	AABB	2.82598	germline	1	0.000532449395382807	0.000671307299333956
16	70407117	70426794	2	neutral	AA	54.5678	somatic	0	0.00667653878525303	0.012737115445147
16	72667161	72698082	2	neutral	AA	54.5681	somatic	0	0.995924727394462	0.764459283684576
16	77057943	77060754	1	loss	A	-1	somatic	0	0.123418388474279	0.334011542668836
16	78336948	78351003	1	loss	A	-1	germline	1	0.000170645648222306	0.000140112621179744
16	86559123	86561934	2	neutral	AA	100	somatic	0	0.748729833160042	0.874104189339071
16	87413667	87433344	2	neutral	AA	27.2839	somatic	0	0.814446369382749	0.867319348130228
16	87568272	87571083	2	neutral	AA	100	somatic	0	0.181384492944431	0.412616541491281
16	88493091	88504335	2	neutral	AA	17.4948	somatic	0	0.263978984064078	0.469161823590222
16	89066535	89072157	2	neutral	AA	18.1895	somatic	0	0.694084446060226	0.853709830415152
17	413217	430083	2	neutral	AA	100	somatic	0	0.613584821812483	0.805003371051641
17	2156037	2161659	2	neutral	AA	100	germline	1	0.182250567158997	0.277779846260295
17	3184863	3359145	2	neutral	AA	81.9776	somatic	0	0.098351655594315	0.124480883303387
17	8343048	8345859	1	loss	A	-1	somatic	0	0.0866780551834276	0.275916266475777
17	13169535	13180779	2	neutral	AA	100	somatic	0	0.300177227834863	0.439930167152493
17	14285502	14288313	1	loss	A	-1	somatic	0	0.0833145856446204	0.270123783516308
17	21290514	21304569	4	gain	AABB	0.227388	germline	1	0.000107626774097529	9.08735867879429e-05
17	21855525	21858336	4	gain	-	-1	germline	1	0.0832857757084725	0.270073754223733
17	21883635	21967965	1	loss	A	-1	germline	1	1.08304850139242e-18	0
17	21967965	21982020	7	gain	-	-1	germline	1	0.00270079158952571	0.00495879426042134
17	21982020	21987642	5	gain	AAABB	-1	germline	1	NA	NA
17	21987642	22159113	5	gain	AAABB	0.381875	germline	1	4.24817569278438e-10	1.02373665100686e-11
17	26808507	26828184	3	gain	-	-1	germline	1	0.00140756853216654	0.000522952330991533
17	26864727	26867538	4	gain	-	-1	germline	1	0.0832844040080704	0.270071372045183
17	26937813	26940624	10	gain	AAAAAAABBB	3.77876	germline	1	0.083274116838372	0.270053506194936
17	31828953	31837386	2	neutral	AA	100	germline	1	0.154762949072274	0.264717655720102
17	44621814	44641491	2	neutral	AA	100	germline	1	0.0450342987997488	0.0547053899167811
17	58763955	59345832	2	neutral	AA	23.9526	somatic	0	4.2762125214054e-21	0
17	61184226	61223580	2	neutral	AA	21.8438	somatic	0	0.433897701681934	0.638758764379664
17	76366437	76369248	0	loss	-	-1	germline	1	0.0832672592970965	0.270041596107392
17	78387546	78407223	2	neutral	AA	100	somatic	0	0.190463538059856	0.123643555305775
17	80743164	80745975	4	gain	AAAB	7.54247	germline	1	0.0832823464917806	0.270067798806114
17	82584369	82587180	4	gain	AABB	22.0216	germline	1	0.0832850898559839	0.270072563132541
18	2099817	2111061	2	neutral	AA	100	somatic	0	0.0462482790305907	0.0788356189714122
18	22271553	22302474	2	neutral	AA	32.7005	somatic	0	0.0141272873703213	0.0464674095836254
18	23587101	23592723	2	neutral	AA	54.5678	somatic	0	0.462815596042986	0.88785168106518
18	27145827	27157071	2	neutral	AA	54.571	somatic	0	0.483452897985651	0.298119504270682
18	29594208	29597019	0	loss	-	-1	germline	1	0.0832662307053618	0.270041596107392
18	29925906	29987748	2	neutral	AA	36.5722	somatic	0	0.344055874855985	0.295895778286415
18	32902755	32908377	2	neutral	AA	100	somatic	0	0.045749731709011	0.0861453752780329
18	35303349	35308971	2	neutral	AA	100	somatic	0	0.0977519727509313	0.136969463274765
18	35848683	35972367	2	neutral	AA	100	somatic	0	0.774665652033478	0.465660353336508
18	44762364	44939457	2	neutral	AA	100	somatic	0	1.5518800691913e-09	2.1887905266027e-08
18	51275451	51300750	2	neutral	AA	54.5685	somatic	0	0.51521427721452	0.39498013216792
18	53678856	53684478	1	loss	A	-1	germline	1	0.0216586250503107	0.0561685848722943
18	54600864	54713304	2	neutral	AA	85.5799	somatic	0	0.00248514426053465	0.0136418192761518
18	54884775	54893208	2	neutral	AA	100	somatic	0	0.811668392628994	0.933548476740865
18	57184173	57189795	2	neutral	AA	54.7098	somatic	0	0.0880090104994591	0.15926034174715
18	63472380	63486435	2	neutral	AA	54.5701	somatic	0	0.867372580856542	0.660751013189203
18	64894746	64931289	2	neutral	AA	100	somatic	0	0.476303686135923	0.397385733291704
18	72428226	72532233	2	neutral	AA	100	somatic	0	0.706768400062108	0.6706774134024
19	7449150	7451961	8	gain	AAAAABBB	8.00549	germline	1	0.0832754884015243	0.270055888258455
19	7572834	7589700	2	neutral	AA	36.3812	somatic	0	0.000571715522261224	0.000427255452623565
19	8865894	8910870	2	neutral	AA	0.809469	germline	1	0.553307185042163	0.750434882470951
19	12582036	12652311	2	neutral	AA	27.3918	somatic	0	8.39386586592248e-09	1.12558595777301e-09
19	13900395	13917261	2	neutral	AA	36.3786	germline	1	0.307767764472711	0.280538053903464
19	16697340	16702962	2	neutral	AA	100	somatic	0	0.0360197754508185	0.0710748218135551
19	16733883	16747938	2	neutral	AA	36.3786	somatic	0	0.011488823081611	0.0693397682619767
19	22957437	22960248	0	loss	-	-1	germline	1	0.0832720595279546	0.270049933128407
19	23038956	23041767	1	loss	A	-1	germline	1	0.0833152716938596	0.270124974772382
19	24332016	24405102	3	gain	AAB	0.924718	germline	1	2.16801572215965e-17	0
19	27244212	27336975	2	neutral	AA	1.75781	germline	1	7.50266094131477e-10	1.95684524140205e-09
19	27336975	27342597	3	gain	AAB	1.32962	germline	1	0.0143254724936451	0.0366763669241211
19	27345408	27379140	5	gain	AAABB	0.20461	germline	1	9.23491112750573e-09	5.58754043034071e-10
19	27379140	27381951	3	gain	AAB	3.59886	germline	1	0.0833687976349032	0.270217904560489
19	27381951	27398817	4	gain	AAAB	3.28143	germline	1	2.21151277826057e-05	1.2297937736383e-05
19	29509878	29515500	1	loss	A	-1	germline	1	0.0212693230070397	0.057349059316124
19	33383436	33405924	2	neutral	AA	100	somatic	0	0.00902895551058114	0.0327365608213912
19	36349041	36357474	1	loss	A	-1	germline	1	0.00446903036550349	0.00767229326301733
19	46097589	46210029	2	neutral	AA	15.0867	somatic	0	0.0445879252247823	0.126728315985657
19	49192500	49203744	1	loss	A	-1	germline	1	0.00103123959776333	0.00152686966049154
19	58100559	58176456	2	neutral	AA	36.3789	somatic	0	6.18545790830712e-08	2.21765321661849e-08
20	64653	67464	4	gain	-	-1	germline	1	0.0832830323259688	0.27006898988197
20	26316582	26322204	0	loss	-	-1	germline	1	0.014307284880319	0.0366339852371446
20	28773396	28776207	4	gain	-	-1	germline	1	0.0832844040080704	0.270071372045183
20	28781829	28787451	6	gain	-	-1	germline	1	0.0143099900797055	0.0366382214767423
20	28804317	28832427	7	gain	-	-1	germline	1	4.59688139297174e-06	1.66437819781873e-06
20	28942056	28944867	3	gain	-	-1	germline	1	0.0834044970673854	0.270279870713802
20	28953300	28956111	5	gain	-	-1	germline	1	0.0832809748371295	0.270065416665908
20	29262510	29265321	9	gain	-	-1	germline	1	0.0832748026176607	0.270054697224778
20	29408682	29411493	4	gain	-	-1	germline	1	0.0832850898559839	0.270072563132541
20	30937866	30943488	4	gain	-	-1	germline	1	0.0143115051884387	0.0366398509137847
20	31182423	31185234	4	gain	-	-1	germline	1	0.0832830323259688	0.27006898988197
20	31185234	31188045	13	gain	-	-1	germline	1	0.083272745293519	0.270051124146754
20	31241454	31244265	23	gain	-	-1	germline	1	0.0832700022587102	0.270046360096401
20	36382773	36492402	2	neutral	AA	22.6399	somatic	0	0.978546081328594	0.665700827075799
20	38994192	39165663	2	neutral	AA	54.8585	somatic	0	0.154759810346913	0.194289410864805
20	41032167	41034978	2	neutral	AA	100	somatic	0	0.745014818472607	0.872292070022865
20	41186772	41223315	2	neutral	AA	33.6474	somatic	0	0.731298453279443	0.88410150144386
20	41757405	41760216	2	neutral	AA	100	somatic	0	0.635352790544731	0.81204825521687
20	44514996	44517807	2	neutral	AA	100	somatic	0	0.239443551581984	0.481280827762998
20	45285210	45288021	2	neutral	AA	100	somatic	0	0.221951212491667	0.461430577009208
20	45723726	45729348	2	neutral	AA	100	germline	1	0.353309990479125	0.354828462784586
20	46786284	46791906	3	gain	AAB	6.30101	somatic	0	0.014853695322551	0.0381984913620917
20	50460261	50465883	2	neutral	AA	100	somatic	0	0.214980458379744	0.25380876272715
20	50606433	50612055	2	neutral	AA	43.4938	somatic	0	0.9720744621227	0.862454868338904
20	51652125	51654936	2	neutral	AA	100	somatic	0	0.894057459924704	0.93395087884467
20	52110318	52115940	2	neutral	AA	100	somatic	0	0.119783769927397	0.26912362177643
20	52703439	52711872	2	neutral	AA	100	somatic	0	0.507845001497801	0.511692054238881
20	54030231	54041475	1	loss	A	-1	germline	1	0.00111897144342684	0.00137513424614044
20	54991593	54994404	2	neutral	AA	100	somatic	0	0.92520639866701	0.943940388020335
20	55924845	55933278	2	neutral	AA	39.5637	somatic	0	0.70500911496305	0.715867383966922
20	58308573	58311384	2	neutral	AA	100	somatic	0	0.320127955107986	0.565464598089259
20	58643082	58645893	2	neutral	AA	100	somatic	0	0.699784613065689	0.848958860805907
20	60326871	60329682	2	neutral	AA	100	somatic	0	0.663514449110935	0.828700391639833
20	61327587	61338831	2	neutral	AA	100	germline	1	0.00926499660524691	0.0425181676037656
20	61375374	61392240	2	neutral	AA	11.0013	germline	1	0.556034317554925	0.959224436919856
20	61721127	61726749	2	neutral	AA	29.0898	somatic	0	0.167322910085892	0.249244769164822
20	62187753	62204619	2	neutral	AA	100	somatic	0	0.282203514379231	0.512342790398917
20	62837094	62842716	2	neutral	AA	54.6331	somatic	0	0.69517589169378	0.676073281688408
20	63028242	63053541	2	neutral	AA	8.85005	germline	1	0.426083736680235	0.222600394002936
20	63092895	63095706	1	loss	A	-1	somatic	0	0.122653889379633	0.332882847942583
20	63716937	63719748	2	neutral	AA	100	somatic	0	0.270712907771725	0.515235416733705
21	7915776	7918587	7	gain	-	-1	germline	1	0.0832754884015243	0.270055888258455
21	7918587	7924209	5	gain	-	-1	germline	1	0.0143109640619332	0.0366388732439509
21	8989578	8995200	8	gain	AAAAABBB	3.42357	germline	1	0.0143092325783998	0.0366362662359814
21	9759792	9762603	5	gain	AAAAB	20.1002	germline	1	0.0832823464917806	0.270067798806114
21	10271394	10274205	41	gain	-	-1	germline	1	0.0832672592970965	0.270041596107399
21	10650879	10653690	3	gain	AAB	39.3212	germline	1	0.0832940062952046	0.270088047617128
21	10653690	10656501	5	gain	AAAAA	17.7801	germline	1	0.0832809748371295	0.270065416665908
21	10656501	10690233	3	gain	AAB	1.81151	germline	1	9.24397763760848e-09	5.5932836140471e-10
21	10690233	10693044	24	gain	AAAAAAAAAAAAAAAAAAAAABBB	100	germline	1	0.0832693165114447	0.270045169093399
21	10693044	10704288	3	gain	AAB	25.8437	germline	1	0.000532784927526432	0.000671701495378429
21	10704288	10707099	5	gain	AAAAA	2.60814	germline	1	0.0832809748371295	0.270065416665908
21	10707099	10715532	3	gain	AAA	4.12264	germline	1	0.00270193540539817	0.00496024999487499
21	10715532	10721154	5	gain	AAABB	16.3859	germline	1	0.0143109640619332	0.0366388732439509
21	10721154	10738020	4	gain	AAAB	3.21331	germline	1	2.21210183373473e-05	1.23025327598558e-05
21	10752075	10754886	9	gain	AAAAAABBB	2.1503	germline	1	0.0832748026176607	0.270054697224778
21	10763319	10766130	3	gain	AAB	25.2726	germline	1	0.083290233861169	0.270082091969445
21	16191360	16211037	2	neutral	AA	100	somatic	0	0.393255901068697	0.226524972333946
21	17453499	17515341	2	neutral	AA	19.4846	somatic	0	0.000127251884429084	0.000589520868858773
21	19463364	19471797	1	loss	A	-1	germline	1	0.00614554226861193	0.0093187832908892
21	22639794	22648227	2	neutral	AA	100	somatic	0	0.559430977308082	0.686856460409567
21	24292662	24298284	2	neutral	AA	55.0709	somatic	0	0.983253567273208	0.932990158330631
21	24391047	24393858	1	loss	A	-1	somatic	0	0.122554972739106	0.332736596435982
21	24922326	24925137	2	neutral	AA	100	somatic	0	0.315760622065636	0.561153607169714
21	26299716	26313771	2	neutral	AA	16.5006	germline	1	0.573864715159818	0.420944710314789
21	28149354	28197141	2	neutral	AA	22.4762	somatic	0	0.558381921713517	0.851144126594554
21	32298390	32363043	2	neutral	AA	25.0959	somatic	0	0.380223634021206	0.435567865454016
21	33189477	33214776	2	neutral	AA	10.9408	somatic	0	0.652993699140772	0.89922318236774
21	34968840	34971651	2	neutral	AA	100	somatic	0	0.952070783776674	0.951759572139348
21	37124877	37237317	2	neutral	AA	100	somatic	0	0.173729344219548	0.543626050965342
21	40346283	40419369	2	neutral	AA	100	somatic	0	0.333717930465466	0.550883207222618
21	40857885	40860696	2	neutral	AA	54.5678	somatic	0	0.415514470289096	0.652443917493356
21	41473494	41476305	1	loss	A	-1	germline	1	0.0864753015914169	0.275569216744643
21	42437667	42440478	2	neutral	AA	100	somatic	0	0.929422083066429	0.945209629059624
21	42715956	42718767	1	loss	A	-1	germline	1	0.094646641967624	0.289275503194859
21	43334376	43339998	3	gain	AAB	5.10414	somatic	0	0.0348093311566346	0.102562699859156
21	44908536	44916969	2	neutral	AA	100	somatic	0	0.830934680623422	0.980465760764779
21	44916969	45226179	2	neutral	AA	25.8962	somatic	0	8.51379894838995e-06	1.49557049256011e-06
21	45549444	45557877	1	loss	A	87.8308	somatic	0	0.00936331718606314	0.0141536440332585
21	45600042	45872709	2	neutral	AA	32.4208	somatic	0	0.535680132312521	0.277681299731149
21	45889575	45900819	2	neutral	AA	19.4557	germline	1	0.686604223391523	0.570531331424275
21	46002015	46049802	2	neutral	AA	4.17322	somatic	0	0.810185887101894	0.830265132188573
22	11626296	11629107	4	gain	AABB	51.4522	germline	1	0.0832878332933894	0.270077327520318
22	12691665	12694476	9	gain	AAAAAAAAA	100	germline	1	0.0832748026176607	0.270054697224778
22	17875149	17877960	3	gain	AAB	27.6191	germline	1	0.083294692207172	0.270089238758168
22	22347450	22769100	2	neutral	AA	1.64264	somatic	0	2.7167366291361e-05	0.000360926117465077
22	28899891	28911135	2	neutral	AA	100	somatic	0	0.518272964965444	0.704713331176001
22	33358137	33363759	1	loss	A	-1	somatic	0	0.0231971148649681	0.0563638675621758
22	36748203	36753825	1	loss	A	-1	germline	1	0.0218093254928683	0.0574163841631877
22	40562730	40576785	2	neutral	AA	100	germline	1	0.366591675801614	0.300139580270227
22	49318995	49321806	1	loss	A	-1	germline	1	0.0836729818629869	0.270746140668085
22	50642976	50645787	4	gain	AAAB	28.1056	germline	1	0.0832850898559839	0.270072563132541
Y	10653690	10757697	2	gain	-	-1	somatic	0	0.549605310006259	0.32232327512757
Y	10757697	10760508	5	gain	-	-1	germline	1	0.0832802890166665	0.270064225601556
Y	10760508	10794240	2	gain	-	-1	somatic	0	0.527078552037392	0.0665082741101729
Y	10794240	10802673	3	gain	-	-1	germline	1	0.00520384786971656	0.0159725724368259
Y	10985388	10988199	6	gain	-	-1	germline	1	0.0832796032007785	0.270063034541038
Y	10988199	10999443	2	gain	-	-1	germline	1	0.187258511637168	0.107549362160777
Y	10999443	11002254	4	gain	-	-1	germline	1	0.0832830323259688	0.27006898988197
Y	11013498	11016309	5	gain	-	-1	germline	1	0.0832802890166665	0.270064225601556
Y	11291787	11305842	18	gain	AAAAAAAAAAABBBBBBB	13.4646	germline	1	0.000107550709072399	9.08271218837964e-05
Y	11305842	11322708	5	gain	AAABB	0.937111	germline	1	0.00270134372124572	0.00495952207868799
Y	11322708	11333952	12	gain	AAAAAAAABBBB	1.21359	germline	1	0.00270051556233724	0.00495833115432054
Y	11685327	11688138	2	gain	AA	54.3337	germline	1	0.183744619900167	0.415573085384547
Y	11688138	11690949	4	gain	AAAB	37.4138	germline	1	0.0832878332933894	0.270077327520318
Y	11721870	11724681	26	gain	AAAAAAAAAAAAAAAAAAABBBBBBB	100	germline	1	0.0832693165114447	0.270045169093399
Y	11724681	11747169	2	gain	AB	17.6284	germline	1	2.88576467390895e-05	2.07378784233825e-05
Y	11747169	11749980	6	gain	AAAABB	2.58586	germline	1	0.0832775457805642	0.270059461382492
