chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	819994	921306	2	neutral	AA	1.27633	somatic	0	0.0496171720724124	0.0657494528081806
1	14587345	14661746	2	neutral	AA	39.2052	somatic	0	0.00568070862645491	0.00858139059292895
1	16612002	16635747	8	gain	AAAAABBB	18.6115	somatic	0	2.21059695654997e-05	1.22967560112208e-05
1	16676905	16942849	4	gain	AAAB	5.26589	somatic	0	1.30372378304984e-16	0
1	28125161	28764693	2	neutral	AA	9.66375	somatic	0	8.88884357845902e-126	0
1	30965063	31444712	2	neutral	AA	7.79667	somatic	0	1.14462747997407e-36	0
1	33616588	33690989	2	neutral	AA	21.8271	somatic	0	2.94522540847023e-05	0.000168196268269249
1	36245951	36573632	2	neutral	AA	7.24977	somatic	0	1.45310372132591e-09	6.26550299420714e-08
1	63734746	63771155	2	neutral	AA	9.04007	somatic	0	0.802204098467465	0.862622866408537
1	69781806	70435585	2	neutral	AA	51.4441	somatic	0	0.00306205298863976	0.00175616630963327
1	72292444	73256491	2	neutral	AA	23.5724	somatic	0	0.0112776433249669	1.12275655290706e-05
1	103561443	103616848	3	gain	AAB	7.73234	germline	1	4.4254363036553e-14	1.11022302462516e-16
1	110311355	110346181	2	neutral	AA	36.3786	somatic	0	0.864993941135003	0.522722077423511
1	116288763	116415403	2	neutral	AA	15.5909	somatic	0	0.000121411812336258	0.000242208364632956
1	121594979	125072830	2	neutral	AA	100	somatic	0	6.36776372896122e-21	0
1	125080745	125085494	5	gain	-	-1	germline	1	0.00270140402496469	0.0049596887187654
1	149944926	149946509	2	neutral	AA	100	somatic	0	0.931488722332085	0.9458243750346
1	152107304	152156377	2	neutral	AA	3.52094	somatic	0	5.19875890615316e-06	0.000139008582352385
1	152582204	152613864	1	loss	A	-1	germline	1	4.86322815704364e-13	1.11022302462516e-15
1	153440190	153486097	2	neutral	AA	36.3977	somatic	0	0.531987305731107	0.537861641480033
1	155349288	155447434	2	neutral	AA	100	somatic	0	6.59166442276388e-24	0
1	155953994	156365574	2	neutral	AA	25.7886	somatic	0	3.93385814191646e-30	0
1	167897729	168176337	2	neutral	AA	100	somatic	0	0.349419266355824	0.250961167177183
1	179453629	179632508	2	neutral	AA	9.92142	somatic	0	0.0286083623325212	0.00665580247013164
1	183711899	183776802	2	neutral	AA	18.195	germline	1	0.00249906205550155	0.0122338361923575
1	224011913	224015079	7	gain	AAAAAAA	0.796587	germline	1	0.0143100312122628	0.0366385933245365
1	234776313	234782645	7	gain	AAAAABB	2.02622	germline	1	0.000532329125571678	0.000671208252593813
1	235089747	235362023	2	neutral	AA	24.3592	somatic	0	1.17874307224617e-29	0
1	246090014	246392367	2	neutral	AA	4.06697	somatic	0	0.0726595134214694	0.0673477282977135
2	3180247	3181830	11	gain	-	-1	germline	1	0.0832710960163714	0.270048519226341
2	89771930	89783011	4	gain	-	-1	germline	1	4.60397600230646e-06	1.66664091028057e-06
2	89783011	89825752	3	gain	-	-1	somatic	0	5.24243068541766e-09	5.02931030155196e-14
2	89825752	89841582	25	gain	-	-1	germline	1	4.32271186462445e-08	4.12572342955997e-09
2	89841582	89851080	4	gain	-	-1	germline	1	2.21318683733225e-05	1.23071314171996e-05
2	239017170	239018753	2	neutral	AA	100	somatic	0	0.192506928859684	0.426418961972576
2	239080490	239082073	2	neutral	AA	100	somatic	0	0.534473514867893	0.745326819824985
2	239175470	239177053	2	neutral	AA	36.3786	somatic	0	0.90232808103737	0.936694727402714
2	239344851	239348017	2	neutral	AA	54.5678	somatic	0	0.0513263548332492	0.096973563438453
2	239365430	239367013	2	neutral	AA	100	somatic	0	0.184774226999705	0.416866476268839
2	239431916	239433499	2	neutral	AA	100	somatic	0	0.751942543070943	0.875704672256151
2	239531645	239533228	2	neutral	AA	100	somatic	0	0.193037243489135	0.427096848634508
2	239647204	239648787	2	neutral	AA	100	somatic	0	0.259917415929788	0.503716827770879
2	239689945	239708941	2	neutral	AA	29.4987	somatic	0	0.932508116127988	0.987908699198965
2	239715273	239720022	2	neutral	AA	8.64835	somatic	0	0.426207965585635	0.32004080252919
2	239833998	239835581	2	neutral	AA	100	somatic	0	0.480891057409963	0.705463818808524
2	239859326	239860909	2	neutral	AA	100	somatic	0	0.326916535727306	0.572048184581416
2	239984383	239985966	2	neutral	AA	100	somatic	0	0.762804818845606	0.880895588363247
2	240085695	240087278	2	neutral	AA	54.5679	somatic	0	0.450920608688096	0.681737252337149
2	240123687	240125270	2	neutral	AA	100	somatic	0	0.86751599154416	0.92465919062832
2	240625498	240636579	2	neutral	AA	13.0706	somatic	0	0.00659560278993842	0.0370504068847848
2	241051325	241063989	2	neutral	AA	93.9032	somatic	0	0.319467153274364	0.405469757344724
2	241114645	241116228	2	neutral	AA	10.9136	somatic	0	0.670104740434497	0.832478705041494
2	241154220	241155803	2	neutral	AA	100	somatic	0	0.157893943172091	0.382243187731738
2	241198544	241200127	2	neutral	AA	100	somatic	0	0.703751115990731	0.851085818174104
2	241220706	241222289	1	loss	A	100	somatic	0	0.133638831640727	0.348834362600032
2	241515144	241530974	2	neutral	AA	26.4698	somatic	0	0.00924339734152021	0.0506760933551781
2	241621205	241622788	1	loss	A	-1	somatic	0	0.129043643701737	0.342230806527646
2	241637035	241638618	2	neutral	AA	100	somatic	0	0.162365847684207	0.38816096490955
2	241694023	241695606	1	loss	A	29.8633	somatic	0	0.131772419631475	0.346163728376947
2	241743096	241744679	2	neutral	AA	100	somatic	0	0.517832879183865	0.7333227668095
3	65202187	65229098	1	loss	A	-1	germline	1	5.36532215053174e-10	1.03399511175439e-11
3	67996182	68148150	2	neutral	AA	19.9277	somatic	0	1.3920525304724e-09	1.00710666472992e-08
3	75708558	75858943	2	neutral	AA	0.36491	somatic	0	0.00168911208818425	0.0246489869683464
3	139755155	140006852	2	neutral	AA	22.6604	somatic	0	5.0657414831353e-19	2.19713136573318e-13
3	158136951	158171777	2	neutral	AA	54.5678	somatic	0	0.787258491605474	0.351126619551071
3	182727273	182739937	2	neutral	AA	100	somatic	0	0.203151742657281	0.323394006864593
3	187378127	187431949	2	neutral	AA	49.1541	somatic	0	0.350795693276839	0.592562262326772
4	10208767	10232512	1	loss	A	-1	germline	1	1.00654419245823e-09	3.80626641316439e-11
4	10390812	10400310	1	loss	A	-1	germline	1	8.79873253801612e-05	4.26878015352683e-05
4	12713073	12716239	1	loss	A	-1	germline	1	0.0157419278944538	0.0409644673692726
4	40293682	40296848	5	gain	-	-1	germline	1	0.0143130243865513	0.0366450315115278
4	42759996	42767911	1	loss	A	-1	germline	1	0.000262145063599043	0.000277578997182393
4	43450184	43453350	1	loss	A	-1	germline	1	0.0144373905749085	0.037004555716139
4	63269344	63288340	1	loss	A	-1	germline	1	7.61132262773543e-09	5.66609426044806e-10
4	63828143	63850305	1	loss	A	-1	germline	1	3.90661929668996e-08	3.45522510603047e-09
4	91009836	91013002	0	loss	-	-1	germline	1	0.0143217627265541	0.036676500887466
4	114253025	114260940	1	loss	A	-1	germline	1	0.000352863097859779	0.000483980645502369
4	190107219	190110385	10	gain	-	-1	germline	1	0.0143080767842499	0.0366343630548244
5	45004690	45014188	1	loss	A	-1	germline	1	6.58146691696303e-05	3.18424167912168e-05
5	140842676	140860089	1	loss	A	-1	germline	1	1.50043968202205e-06	2.49875367952512e-07
5	141057964	141061130	2	neutral	AA	54.5678	somatic	0	0.249479357898106	0.677905365776658
5	141175106	141176689	7	gain	AAAAAAB	100	germline	1	0.0832799985980418	0.270063980742093
5	142365522	142389267	2	neutral	AA	29.7445	somatic	0	0.0291996411739807	0.0809281132662559
5	142807179	142823009	2	neutral	AA	27.2839	somatic	0	0.899707273759541	0.853293604729883
5	143047795	143076289	2	neutral	AA	54.5678	somatic	0	0.0465951901472424	0.0873885795342365
5	147401045	147453284	2	neutral	AA	54.5678	somatic	0	4.57344368680786e-08	4.68068266035182e-07
5	147507106	147546681	2	neutral	AA	100	somatic	0	0.458060820040669	0.661991003357245
5	148095982	148103897	2	neutral	AA	36.3786	somatic	0	0.594378901307238	0.788277417001267
5	149652071	149690063	2	neutral	AA	27.2954	somatic	0	0.463924467344878	0.454465005372703
5	149827784	149830950	2	neutral	AA	54.5678	somatic	0	0.797178164220008	0.978393311041868
5	150475231	150494227	2	neutral	AA	86.1535	somatic	0	0.00111937315728614	0.00170501969808845
5	152300430	152313094	2	neutral	AA	54.5678	somatic	0	0.641652246190024	0.31117184424238
5	154329836	154350415	2	neutral	AA	54.5678	somatic	0	0.261075664676852	0.563146431362286
5	154632189	154663849	2	neutral	AA	28.5687	somatic	0	0.0034974889611024	0.00186628084695006
5	156050557	156061638	1	loss	A	-1	germline	1	1.41971313731508e-05	7.20351066807456e-06
5	157430933	157454678	2	neutral	AA	54.5678	somatic	0	0.627473901977965	0.853904383856698
5	157587650	157633557	2	neutral	AA	36.3786	somatic	0	0.038308987240965	0.0509967408187919
5	158227182	158241429	2	neutral	AA	54.5678	somatic	0	0.0655942194215955	0.0822430930964718
5	166328976	166868779	2	neutral	AA	8.49949	somatic	0	0.000920836901634583	3.10956334731438e-05
5	169800495	169805244	2	neutral	AA	21.8271	somatic	0	0.409950902454067	0.57876319589137
5	170793036	170984579	2	neutral	AA	32.0643	somatic	0	0.122578356215703	0.28970616286762
5	171104887	171359750	2	neutral	AA	13.642	somatic	0	0.132506624067064	0.439987695134871
5	174438685	174558993	2	neutral	AA	11.1667	somatic	0	0.230199051446269	0.307007398822166
5	176822683	176859092	2	neutral	AA	48.2515	somatic	0	0.853143088859331	0.891685253787136
5	178002018	178152403	2	neutral	AA	100	somatic	0	1.86206613044282e-10	9.35163058102262e-12
5	178584562	178586145	7	gain	AAAAAAA	3.25666	germline	1	0.0832772890350496	0.270059274994982
5	179539111	179581852	2	neutral	AA	27.2839	somatic	0	5.16701710415327e-10	1.72454273084099e-11
5	180705782	180775434	2	neutral	AA	27.3219	somatic	0	0.411132656924903	0.291689114138356
5	180949564	181003386	1	loss	A	-1	germline	1	2.29943770461847e-20	0
6	256446	383086	4	gain	AABB	0.631343	germline	1	3.69430597057432e-52	0
6	731346	800998	2	neutral	AA	16.5646	somatic	0	5.24734164168316e-05	0.000149395051550982
6	10515869	10544363	2	neutral	AA	18.6201	somatic	0	0.000691218100293933	0.00499222074417338
6	21071313	21283435	2	neutral	AA	9.09931	somatic	0	0.000347936404020198	0.00234411971982484
6	24028357	24341791	2	neutral	AA	15.5936	somatic	0	8.26422363920055e-06	2.61367539688973e-06
6	32511654	32562310	0	loss	-	-1	germline	1	5.73967920211066e-10	1.18829612816285e-10
6	32562310	32665205	1	loss	A	-1	germline	1	1.37704300911577e-11	1.0769163338864e-14
6	33515276	33548519	2	neutral	AA	36.3786	somatic	0	7.04920744789308e-06	3.24363680637152e-06
6	34643955	34848162	2	neutral	AA	55.1272	somatic	0	1.09393048889169e-36	0
6	35786881	35797962	4	gain	AAAB	11.1684	germline	1	4.60193174532073e-06	1.66561630199347e-06
6	51762517	51802092	2	neutral	AA	21.8302	somatic	0	0.142459587155414	0.206954213590412
6	61317505	61497967	2	neutral	AA	19.6628	somatic	0	7.52277326873382e-23	0
6	62648808	62699464	2	neutral	AA	16.1677	somatic	0	0.167028849762387	0.297360122955703
6	63905710	63957949	2	neutral	AA	54.5678	somatic	0	0.193765278675076	0.482630825554094
6	82268510	82353992	2	neutral	AA	100	somatic	0	0.0731223805891039	0.0514437876315541
6	106998136	107110529	2	neutral	AA	100	somatic	0	3.55405975999281e-16	7.88258347483861e-15
6	114281519	114525301	2	neutral	AA	10.5142	germline	1	0.00171321466515042	0.00738672069039648
6	134206740	134236817	2	neutral	AA	13.4107	somatic	0	6.68731393322634e-06	2.0363992326855e-06
6	138894003	138936744	2	neutral	AA	36.3786	somatic	0	0.807424924366408	0.813550947811652
6	145487198	145560016	2	neutral	AA	100	somatic	0	0.000460797922811327	0.00988974892836614
6	153421194	153430692	3	gain	AAB	0.333959	germline	1	8.89366573037906e-05	0.000485196123464759
6	156496963	156520708	2	neutral	AA	15.5922	somatic	0	0.00951541086338679	0.0222581593565314
6	157309042	157315374	6	gain	AAAABB	1.13631	germline	1	0.00270114802347175	0.00495927790183959
6	160747318	160858128	2	neutral	AA	2.70918	somatic	0	0.188262741133673	0.523463562953538
6	161314032	161418510	2	neutral	AA	9.17874	germline	1	0.166936341905434	0.0923539154338572
6	162939773	163178806	2	neutral	AA	34.318	somatic	0	0.000885341822546349	0.00118561731771616
6	168073442	168078191	2	neutral	AA	27.2839	somatic	0	0.0611245203180057	0.188861793788485
7	61095885	62381281	2	neutral	AA	1.39454	somatic	0	4.30238020809046e-06	5.24088013431623e-07
7	62401860	62406609	4	gain	-	-1	germline	1	0.00270247279234085	0.00496110814454231
7	62436686	62455682	2	neutral	AA	1.87715	somatic	0	0.0335916170969292	0.00773116059211476
7	62575990	62577573	1	loss	A	-1	somatic	0	0.134466176418499	0.350014471715745
7	72487153	72498234	2	neutral	AA	72.6259	somatic	0	0.824886720778809	0.915854233795547
7	74282275	74443741	2	neutral	AA	38.7551	somatic	0	3.4105054372975e-30	0
7	74989876	75547092	2	neutral	AA	15.6529	somatic	0	6.83420875033788e-11	2.48988940576567e-10
7	75854194	76365503	2	neutral	AA	18.9074	somatic	0	1.71950183184671e-49	0
7	100949493	100957408	3	gain	AAB	19.9519	germline	1	0.000116724967849867	0.0001167395055236
7	100957408	100958991	21	gain	AAAAAAAAAAAAAAAAAAAAB	5.70162	germline	1	0.083268773730553	0.270044485893719
7	100958991	100976404	3	gain	AAB	0.953453	somatic	0	9.34311666678938e-09	5.84844728201972e-10
7	101161615	101429142	2	neutral	AA	3.68013	somatic	0	5.44763879564445e-36	0
7	105184018	105323322	2	neutral	AA	29.6894	somatic	0	0.0018119361529461	4.39949579051913e-05
7	105323322	105351816	2	neutral	AA	18.1893	somatic	0	6.67554837945584e-06	1.46691162347112e-05
7	108163224	108677699	2	neutral	AA	30.9587	somatic	0	7.13010779049416e-11	2.69525513019175e-11
7	129574882	129742680	2	neutral	AA	61.9702	somatic	0	5.37601485075694e-06	5.29044986929961e-07
7	130062446	130121017	2	neutral	AA	31.6974	somatic	0	4.17518560252817e-05	0.000486420220732864
7	134100679	134113343	1	loss	A	-1	germline	1	2.07358592203041e-06	8.47457774066918e-07
7	143847210	143850376	4	gain	AAAB	40.1949	germline	1	0.0143130243865513	0.0366419042685143
7	152401742	152408074	11	gain	AAAAAAAAABB	2.51503	germline	1	0.000532178578310266	0.000671113907887877
7	158594438	158596021	7	gain	AAAAABB	22.7196	germline	1	0.0832792244298998	0.270062636236811
8	39375542	39529093	1	loss	A	-1	germline	1	9.22466778216419e-55	0
8	42332586	42337335	0	loss	-	-1	germline	1	0.0143186457159066	0.0366630637012988
8	43236479	43239645	4	gain	-	-1	germline	1	0.01431320766006	0.0366426400693923
8	43239645	43241228	7	gain	-	-1	germline	1	0.0832784502675875	0.270061291736415
8	43241228	43242811	4	gain	-	-1	germline	1	0.0832865792626278	0.270075409234262
8	45971903	46033640	2	neutral	AA	3.69476	somatic	0	0.284340158702729	0.554744561338381
8	53397756	53437331	2	neutral	AA	100	somatic	0	0.00369112590270789	0.00145708290241287
8	66542988	66546154	2	neutral	AA	100	somatic	0	0.134694408314067	0.264908696497928
8	72464991	72566303	2	neutral	AA	18.1893	somatic	0	0.0942863713579534	0.0813282825434741
8	74450073	74454822	0	loss	-	-1	germline	1	0.0143337473972761	0.0367127843883733
8	97034734	97098054	2	neutral	AA	27.2839	germline	1	1.47342981457096e-05	0.00023479555209005
8	97815153	97830983	2	neutral	AA	36.3786	germline	1	0.000723803169825946	0.00103299333928908
8	98464183	98543333	2	neutral	AA	54.5678	somatic	0	2.92213510289709e-05	0.00158514882398419
8	100267220	100319459	2	neutral	AA	36.3786	somatic	0	0.509824440362893	0.0905618529826282
8	100683549	100704128	2	neutral	AA	9.67562	somatic	0	0.00898800570551274	0.0126473676576124
8	113300059	113334885	2	neutral	AA	21.8271	somatic	0	0.0427968319084349	0.00989808482195986
8	123193809	123306202	2	neutral	AA	27.2839	somatic	0	0.015219131958496	0.00240976522013281
8	135090054	135128046	2	neutral	AA	36.3786	somatic	0	0.0365616635690589	0.0682179783897369
8	138642306	138713541	2	neutral	AA	7.1907	somatic	0	0.000521286026961643	0.00167582921185927
8	139780483	139805811	2	neutral	AA	21.8425	somatic	0	0.438986990541166	0.60207072163271
8	141725990	141957108	2	neutral	AA	3.94839	somatic	0	1.72107642449868e-07	3.47498032127191e-07
8	142674207	142701118	2	neutral	AA	18.466	germline	1	0.0705316981812159	0.0767802128788886
8	144124235	144127401	4	gain	AAAB	11.5374	germline	1	0.0143132687516895	0.0366428240216318
8	144127401	144239794	2	neutral	AA	35.6967	somatic	0	3.3808393780564e-20	0
9	10935364	11301037	2	neutral	AA	100	somatic	0	0.132816563582336	0.000545140487984486
9	16692735	16794047	2	neutral	AA	20.932	somatic	0	0.323365002362927	0.0784372300301361
9	17378174	17379757	2	neutral	AA	100	somatic	0	0.800837293401837	0.898163433977836
9	22752459	22796783	2	neutral	AA	54.5679	somatic	0	0.818488002389084	0.547706946458377
9	33782803	33806548	2	neutral	AA	0.800346	germline	1	0.00617876400989831	0.067441952009072
9	34156391	34203881	2	neutral	AA	18.1914	somatic	0	1.63495327446092e-12	4.2632564145606e-14
9	38090146	38170879	2	neutral	AA	9.92281	somatic	0	0.0203786930943733	0.0467135230265624
9	38750257	38774002	2	neutral	AA	43.424	germline	1	0.198774951823706	0.181318866459208
9	63817062	63818645	13	gain	AAAAAAAAAAABB	5.33935	germline	1	0.0832707089650916	0.270047847001184
9	86539444	86541027	0	loss	-	-1	somatic	0	0.083268773730553	0.270044485893731
9	87948314	87970476	2	neutral	AA	43.8467	somatic	0	0.225351276061834	0.254608732183485
9	124002722	124735651	2	neutral	AA	10.5978	germline	1	0.0544986161027185	0.00402296030991656
9	129103148	129234537	2	neutral	AA	66.0393	somatic	0	5.87532741124286e-09	2.1959519314052e-08
9	129424497	129486234	2	neutral	AA	0.131237	somatic	0	0.206524093827538	0.143073513520695
9	131379502	131517223	2	neutral	AA	17.9378	somatic	0	2.58555786262368e-12	5.0616288937988e-10
9	133063814	133081227	3	gain	AAB	8.11408	germline	1	9.69902476732804e-07	2.27190716128867e-07
9	136768034	136780698	1	loss	A	-1	germline	1	8.86082579055814e-06	4.26356575810027e-05
9	137258764	137287258	2	neutral	AA	38.0502	somatic	0	0.00135458462219955	0.0104605891964596
9	137326833	137328416	8	gain	AAAAABBB	8.36277	germline	1	0.0832757407454028	0.270056586023506
9	137714668	137717834	3	gain	AAB	69.5453	germline	1	0.0143204791791012	0.0366531266366519
10	38525471	38527054	4	gain	-	-1	germline	1	0.0832904504385567	0.270082132041618
10	38527054	38528637	11	gain	-	-1	germline	1	0.0832710960163714	0.270048519226341
10	38577710	38582459	3	gain	-	-1	germline	1	0.00270389841653579	0.00496450880947485
10	39557587	39562336	1	loss	A	-1	germline	1	0.00311490800310541	0.006409233339708
10	41769038	41843439	2	neutral	AA	2.35605	somatic	0	4.62170438788661e-13	8.86513085163187e-13
10	41857686	41911508	21	gain	AAAAAAAAAAAAAABBBBBBB	2.86865	germline	1	9.13416310392583e-11	1.38422606710265e-12
10	42300926	42430732	2	neutral	AA	1.16087	somatic	0	0.00297914352693841	0.00243669784209999
10	46514872	46524370	4	gain	AABB	2.59004	germline	1	0.000107643393272821	9.08779566874962e-05
10	46524370	46560779	4	gain	AAAB	0.723264	germline	1	4.53668785450906e-16	0
10	50211177	50233339	2	neutral	AA	54.568	somatic	0	0.0237469937298514	0.0631395972118955
10	63748993	63752159	1	loss	A	-1	germline	1	0.0143357660943609	0.0366985987756793
10	67725489	67728655	0	loss	-	-1	germline	1	0.014336377870259	0.0367048619613637
10	74024246	74717600	2	neutral	AA	56.1187	somatic	0	8.89348148585145e-10	3.44158035403552e-12
10	75198832	75327055	2	neutral	AA	21.2869	somatic	0	0.00117047553941431	0.00497253977787027
10	75327055	75551841	2	neutral	AA	25.1109	somatic	0	9.65064596580808e-08	4.64323921256504e-06
10	94254986	94617493	2	neutral	AA	34.3728	somatic	0	3.97685820792058e-11	6.16273698739178e-12
10	96013699	96026363	1	loss	A	-1	germline	1	7.34516240783193e-06	1.60847840302569e-06
10	101017562	101281923	2	neutral	AA	27.7316	somatic	0	0.421195337669501	0.344940558845835
10	102879170	102953571	2	neutral	AA	31.2979	somatic	0	2.06777615070782e-14	8.06243960482789e-13
10	103208434	103382564	2	neutral	AA	8.68112	somatic	0	1.01935791829193e-27	0
10	106684702	106767018	2	neutral	AA	22.1028	somatic	0	0.522908033713364	0.452177275424624
10	121857757	122004976	2	neutral	AA	27.7214	somatic	0	3.84504068699286e-14	5.55111512312578e-16
10	122004976	122006559	1	loss	A	-1	somatic	0	0.127482566676827	0.339964991836907
10	128463616	128465199	16	gain	AAAAAAAAAABBBBBB	50.7268	germline	1	0.0832699348669042	0.270046502554533
10	131110392	131115141	1	loss	A	-1	germline	1	0.0145379774666039	0.0373183483821399
10	131916139	131962046	2	neutral	AA	3.88704	germline	1	0.00809119626447348	0.00141816004409001
10	132250152	132286561	2	neutral	AA	5.55728	germline	1	0.162336174245028	0.324351344253408
10	132364128	132365711	5	gain	AAAAB	22.4534	germline	1	0.0832842566270304	0.270071375608481
11	6474470	6529875	2	neutral	AA	21.8273	somatic	0	0.326199656700977	0.39151285824222
11	10373399	10384480	2	neutral	AA	32.2049	somatic	0	0.341380365720779	0.560830149552534
11	12480372	12508866	2	neutral	AA	27.2839	somatic	0	0.533409651694237	0.596665502912293
11	16990339	17004586	2	neutral	AA	54.5678	somatic	0	0.00742467422690029	0.00406890944760829
11	24948080	25062056	2	neutral	AA	42.0662	somatic	0	0.0029361712901254	0.00112118773338521
11	25062056	25065222	1	loss	A	-1	somatic	0	0.0246894304093934	0.061429195327393
11	39266315	39335967	2	neutral	AA	32.0874	somatic	0	0.0193052143641208	0.0182936885110636
11	50378975	50396388	3	gain	AAB	2.68276	germline	1	4.59469583571031e-08	5.69601599220704e-09
11	55189712	55205542	1	loss	A	-1	germline	1	5.6054956890563e-06	2.43050867765326e-06
11	55341680	55354344	2	neutral	AA	0.460394	germline	1	0.0183578302287939	0.0623235397455417
11	57652860	57898225	2	neutral	AA	74.3832	somatic	0	7.95797068042372e-11	2.64127608673448e-11
11	61182950	61317505	2	neutral	AA	37.4586	somatic	0	0.000158616380389436	8.45147785385469e-05
11	67093872	67234759	2	neutral	AA	18.2179	somatic	0	6.38745221853747e-28	0
11	91236205	91283695	2	neutral	AA	36.3786	somatic	0	0.228133662759259	0.214216456079598
11	93911475	93927305	2	neutral	AA	27.2839	somatic	0	0.385452224623513	0.542533672898373
11	111574589	111764549	2	neutral	AA	23.3664	somatic	0	0.204411555371945	0.0121468842683639
11	123225469	123276125	2	neutral	AA	13.6501	somatic	0	0.647447786345558	0.715979061057241
11	127850995	127950724	2	neutral	AA	21.9252	somatic	0	0.00066183090967875	0.0183269419017893
11	134630984	134741794	2	neutral	AA	12.8201	somatic	0	7.73615966489402e-06	2.29700246212605e-05
12	2255775	2257358	7	gain	-	-1	germline	1	0.0832792244298998	0.270062636236811
12	19315766	19428159	3	gain	-	-1	somatic	0	1.79266201919046e-44	0
12	37563007	37751384	2	neutral	AA	0.475665	somatic	0	1.1756290945754e-26	0
12	62949578	63003400	2	neutral	AA	21.9134	somatic	0	0.0233595407530065	0.0104776858145615
12	65227515	65273422	2	neutral	AA	41.6828	somatic	0	0.579642453567951	0.593500881197556
12	92820788	92999667	2	neutral	AA	8.79368	germline	1	5.92424355284786e-15	4.44089209850063e-16
12	111929181	112595624	2	neutral	AA	100	somatic	0	2.81718201189884e-49	0
12	113350715	113406120	2	neutral	AA	100	somatic	0	0.00316337349025507	0.00855577580629141
12	117217984	117244895	2	neutral	AA	27.2839	somatic	0	0.790661158915791	0.849364611181473
12	118503380	118824729	2	neutral	AA	6.9708	somatic	0	5.09507522392187e-10	4.44017894674076e-08
12	120265259	120390316	2	neutral	AA	80.4424	somatic	0	2.21868963921839e-20	0
12	123559482	123738361	2	neutral	AA	13.3067	somatic	0	4.68180109670437e-31	0
12	123738361	123808013	2	neutral	AA	16.4495	germline	1	0.000123666050270248	0.000188777825756659
12	129587546	129638202	2	neutral	AA	21.8273	somatic	0	0.00109253450246006	0.00205144981764771
13	18213998	18215581	4	gain	AABB	13.7645	germline	1	0.0832865792626278	0.270075409234262
13	20309890	20317805	2	neutral	AA	100	germline	1	0.506219300054477	0.678993692872767
13	20966835	21106139	2	neutral	AA	81.3586	somatic	0	1.08725301741785e-07	1.41799293418288e-07
13	22019530	22024279	1	loss	A	-1	germline	1	0.0145524770519427	0.0373669740533982
13	37406290	37450614	2	neutral	AA	36.3786	somatic	0	0.203242138534957	0.132324082265779
13	38731261	38766087	2	neutral	AA	36.3786	somatic	0	0.946467590280315	0.872046202952443
13	38986124	38989290	1	loss	A	-1	somatic	0	0.0266861652387443	0.0756574735440809
13	39043112	39070023	2	neutral	AA	21.8283	somatic	0	0.393340828097851	0.0320460300702404
13	40436152	40489974	2	neutral	AA	15.8974	somatic	0	0.130379634106166	0.0423913809369316
13	41322632	41404948	2	neutral	AA	21.8349	somatic	0	0.0197498896327591	0.00109583063835605
13	43301382	43314046	2	neutral	AA	21.8271	somatic	0	0.448147737524909	0.716902831019351
13	45400440	45514416	2	neutral	AA	47.3086	somatic	0	6.00287102197192e-05	2.69273475427267e-05
13	45514416	45527080	2	neutral	AA	81.6177	somatic	0	0.162743193067854	0.182329400904427
13	50511947	50549939	2	neutral	AA	36.3786	somatic	0	4.2629439185594e-06	3.93529282743943e-05
13	62189738	62205568	2	neutral	AA	54.5678	germline	1	0.00536962414629855	0.000945759291424708
13	63035060	63039809	4	gain	AABB	1.89351	germline	1	0.00270330803567714	0.00496327535445584
13	63039809	63058805	3	gain	AAB	0.887512	somatic	0	4.41181139189236e-05	6.01973028270253e-05
13	63058805	63065137	4	gain	AAAB	3.19035	germline	1	0.000534165763549592	0.000676267073043579
13	63065137	63066720	6	gain	AAAABB	1.11472	germline	1	0.0832807727720136	0.270065325252261
13	63066720	63068303	4	gain	AABB	4.52621	germline	1	0.0832869663736618	0.270076081509501
13	63201275	63213939	2	neutral	AA	13.8811	somatic	0	0.768971943277389	0.562448377625817
13	63932621	63954783	2	neutral	AA	24.5925	somatic	0	0.657843381309573	0.508467504123686
13	66755110	66832677	2	neutral	AA	100	somatic	0	0.246012659135675	0.148049703974126
13	68938067	68974476	2	neutral	AA	47.3541	somatic	0	0.734730743662731	0.769053592268947
13	69827713	69832462	1	loss	A	-1	germline	1	0.00394003479296973	0.00822995705633589
13	70160143	70201301	1	loss	A	-1	germline	1	7.89240943296882e-16	0
13	73063365	73136183	2	neutral	AA	100	somatic	0	2.18885574670297e-07	2.64194073151813e-06
13	81323459	81366200	2	neutral	AA	36.5473	somatic	0	0.823244729659408	0.587589009277575
13	81788861	81847432	2	neutral	AA	93.5159	somatic	0	0.0135462265630982	0.00141623244898637
13	85223971	85263546	2	neutral	AA	28.161	somatic	0	0.446745095060538	0.229018795179502
13	85545320	85556401	2	neutral	AA	36.3787	somatic	0	0.206455114327379	0.153752709362626
13	93048740	93094647	2	neutral	AA	62.232	somatic	0	0.272716760680477	0.306388410373612
13	94270816	94801121	2	neutral	AA	14.487	somatic	0	0.00177262528061842	0.000728574111185321
13	98601904	98605070	1	loss	A	-1	germline	1	0.0144782549512578	0.0369368877131862
13	98872597	98932751	2	neutral	AA	81.8775	somatic	0	0.0275180418823057	0.00103276285117126
13	105679497	105704825	2	neutral	AA	54.5678	somatic	0	0.532653356196127	0.456266977008428
13	109021210	109024376	1	loss	A	-1	germline	1	0.0193661109911403	0.0521107337403077
13	109215919	109219085	1	loss	A	-1	germline	1	0.0153742718366652	0.0398572814330659
14	16092778	16094361	6	gain	-	-1	germline	1	0.083280385684299	0.270064652996566
14	31832547	31838879	1	loss	A	-1	germline	1	0.000787405163195786	0.00109920172614053
14	38987707	39041529	2	neutral	AA	27.4051	somatic	0	0.907945844202586	0.135287892665681
14	41140587	41200741	1	loss	A	-1	germline	1	1.04192711995342e-22	0
14	49934152	49946816	2	neutral	AA	54.5687	somatic	0	0.0576838093567486	0.0704311016377367
14	59748752	59751918	1	loss	A	-1	somatic	0	0.0209991106443467	0.0573591375226039
14	68293786	68349191	2	neutral	AA	100	somatic	0	0.00339801673001182	0.0088122187860683
14	70383346	70413423	2	neutral	AA	7.27655	somatic	0	0.152961350053416	0.104131136373753
14	74670110	74674859	2	neutral	AA	100	somatic	0	0.654386837670185	0.926512484598681
14	74674859	74742928	2	neutral	AA	13.6421	somatic	0	4.0069460717851e-08	4.03324478259748e-08
14	76587123	76723261	2	neutral	AA	100	somatic	0	0.0394964802779747	0.14375516875466
14	78005491	78059313	2	neutral	AA	54.5678	somatic	0	0.023754444164335	0.0513195874891942
14	79640730	79648645	1	loss	A	-1	germline	1	0.00038783498693544	0.000257430284414495
14	82032643	82037392	1	loss	A	-1	somatic	0	0.00468129787434348	0.00972651566621152
14	99706838	99736915	2	neutral	AA	27.2839	somatic	0	0.322166592864634	0.626784195792529
14	99926875	99928458	7	gain	AAAABBB	9.36658	germline	1	0.0832792244298998	0.270062636236811
14	105329654	105378727	2	neutral	AA	11.4538	germline	1	0.249649415918605	0.161178444077907
15	17025165	17026748	5	gain	-	-1	germline	1	0.0832850308330662	0.270072720145522
15	17080570	17083736	11	gain	-	-1	germline	1	0.0143079546403177	0.0366343630548244
15	20271898	20273481	4	gain	AABB	18.8636	germline	1	0.0832865792626278	0.270075409234262
15	20339967	20365295	5	gain	AAAAB	2.4961	germline	1	9.15226124601702e-11	1.38600242394205e-12
15	20379542	20381125	2	neutral	AA	9.40855	somatic	0	0.126531888151238	0.338636475964548
15	20385874	20672397	5	gain	AAAAB	0.977014	germline	1	4.53102376830262e-16	0
15	34438165	34520481	3	gain	AAB	0.344611	germline	1	5.33695854090548e-32	0
15	39992912	40076811	2	neutral	AA	57.4592	somatic	0	0.299681854283283	0.227519117145902
15	56419703	57314098	2	neutral	AA	26.1341	somatic	0	0.335138038485172	0.00024416715696296
15	58993661	59151961	2	neutral	AA	18.1893	somatic	0	8.00216182024538e-06	3.75328859392177e-06
15	72092986	72096152	0	loss	-	-1	germline	1	0.0143777260197377	0.0368360506485543
15	76591872	76602953	1	loss	A	-1	germline	1	7.52251702035728e-05	3.95930723151583e-05
15	83216727	83270549	2	neutral	AA	26.2468	somatic	0	0.604438087326744	0.610016729622116
15	88201594	88214258	2	neutral	AA	100	somatic	0	0.000676534867857527	0.00224581009985336
15	91362845	91366011	2	neutral	AA	100	somatic	0	0.729888370910347	0.851730944081412
15	94039698	94072941	2	neutral	AA	11.4037	somatic	0	0.168865918318962	0.254838797031951
16	1024201	1025784	5	gain	AAAAA	2.71122	germline	1	0.0832846437293195	0.270072047876391
16	21524051	21582622	4	gain	AABB	3.78209	germline	1	9.30320271910345e-13	3.44169137633799e-15
16	22283891	22429527	2	neutral	AA	100	somatic	0	3.66780625159453e-13	5.93070037524512e-12
16	22614738	22617904	4	gain	AAAB	16.1728	germline	1	0.0143140629638055	0.0366452154742712
16	22617904	22698637	4	gain	AABB	12.6741	somatic	0	7.9770973725918e-34	0
16	23122881	23260602	2	neutral	AA	22.6782	somatic	0	0.000216723331476484	5.99903685385428e-05
16	23714923	23738668	2	neutral	AA	21.8271	somatic	0	6.12613193738636e-05	2.04269989614314e-05
16	28204311	28223307	2	neutral	AA	54.5678	somatic	0	0.000290011412493878	0.00126861766061559
16	34050330	34051913	2	neutral	AA	36.3794	germline	1	0.158190119656261	0.382633565438925
16	34061411	34066160	7	gain	AAAABBB	61.4711	germline	1	0.00270078075570268	0.00495924055639319
16	34074075	34083573	1	loss	A	-1	somatic	0	0.00112981528660707	0.00240301427212253
16	34083573	34086739	8	gain	AAAAAAAA	18.5636	germline	1	0.0143111306815073	0.0366437437949487
16	34086739	34096237	1	loss	A	-1	somatic	0	0.000285208613321018	0.000116162656548568
16	34096237	34099403	9	gain	AAAAAABBB	5.72036	germline	1	0.0143088096671592	0.0366365700987457
16	34219711	34917814	2	neutral	AA	100	somatic	0	2.68656789978871e-36	0
16	34917814	34958972	2	neutral	AA	0.451217	germline	1	0.776333781855986	0.765404481428382
16	35965760	36124060	2	neutral	AA	5.39481	somatic	0	3.20925519885031e-26	0
16	36124060	36125643	7	gain	-	-1	germline	1	0.0832792244298998	0.270062636236811
16	53416752	53449995	2	neutral	AA	27.2839	somatic	0	7.30364113841099e-05	6.54185536929086e-05
16	68757605	69390805	2	neutral	AA	10.6606	somatic	0	2.50777563668615e-51	0
16	70150645	70160143	5	gain	AAABB	3.28807	germline	1	2.2119265348014e-05	1.22993490765388e-05
16	70160143	70163309	5	gain	AAABB	10.603	germline	1	0.0143124745784459	0.036641536372923
16	74372506	74374089	5	gain	AAABB	53.9159	germline	1	0.0832850308330662	0.270072720145522
16	74989876	75046864	2	neutral	AA	28.1453	somatic	0	2.77553460772177e-06	1.3789607689052e-07
16	80536708	80563619	2	neutral	AA	100	somatic	0	0.925080284042343	0.540343931980243
17	7356201	7924498	2	neutral	AA	100	somatic	0	8.25042436019638e-60	0
17	11937403	12208096	2	neutral	AA	29.0077	somatic	0	0.708687981278992	0.356908276834701
17	16148183	16206754	2	neutral	AA	66.6596	somatic	0	4.32543198414307e-07	1.99365044362132e-06
17	16450536	17192963	2	neutral	AA	57.0905	somatic	0	0.000275868912703304	0.0024392677627465
17	17192963	17327518	2	neutral	AA	7.4336	somatic	0	1.56638893048388e-19	0
17	21289767	21304014	4	gain	AABB	0.214443	germline	1	2.03998331776052e-07	3.0542301465708e-08
17	21676019	21858064	4	gain	-	-1	germline	1	2.80634782977491e-10	2.83025269887105e-10
17	21884975	21967291	1	loss	A	-1	somatic	0	3.13280761742376e-30	0
17	21967291	21968874	3	gain	-	-1	germline	1	0.0833241358195957	0.270140625619829
17	21968874	21978372	24	gain	-	-1	germline	1	0.00270013536535015	0.00495797096458817
17	21978372	21983121	8	gain	-	-1	germline	1	0.00270073624149815	0.00495894180210177
17	21986287	21987870	3	gain	-	-1	germline	1	0.0833094213075416	0.270115075563364
17	21987870	21991036	7	gain	-	-1	germline	1	0.0143103366129119	0.0366385933245365
17	22124008	22158834	6	gain	AAAABB	0.203035	germline	1	2.07483290445183e-15	0
17	26865093	26868259	4	gain	-	-1	germline	1	0.0143131465686604	0.0366435598386693
17	26877757	26879340	4	gain	-	-1	germline	1	0.0832869663736618	0.270076081509501
17	26936328	26941077	11	gain	AAAAAAABBBB	7.90007	somatic	0	0.00270029113632416	0.00495819498854921
17	39220408	39269481	2	neutral	AA	36.3786	somatic	0	0.00173401608113554	0.00340954821074524
17	49782184	49866083	2	neutral	AA	11.5278	somatic	0	0.00831086772818428	0.00543013361999178
17	74834742	74937637	2	neutral	AA	28.8197	somatic	0	0.564733748086801	0.217687291379541
17	79996905	80174201	2	neutral	AA	8.22939	somatic	0	2.44215356263979e-15	2.35367281220533e-14
17	81530832	81663804	2	neutral	AA	6.56228	somatic	0	3.17849182576423e-18	2.22044604925031e-16
17	82358741	82360324	7	gain	AAAABBB	10.1182	germline	1	0.0832784502675875	0.270061291736415
18	29594185	29597351	1	loss	A	-1	germline	1	0.015107162640069	0.0389948436186722
18	30490163	30491746	0	loss	-	-1	germline	1	0.0833117445116046	0.27011910966555
18	40679934	40686266	1	loss	A	-1	germline	1	0.00142146488423068	0.00128559890703972
18	48894121	48919449	2	neutral	AA	50.5669	somatic	0	0.175033274112183	0.555887836457838
18	53427833	53429416	0	loss	-	-1	germline	1	0.0833214250934148	0.270135918897955
18	54561261	54569176	2	neutral	AA	27.2839	somatic	0	0.784638447231286	0.951863662912098
18	55116894	55143805	2	neutral	AA	21.8272	somatic	0	0.00409151445545388	0.0232086444275732
18	57279272	57280855	0	loss	-	-1	germline	1	0.0832707089650916	0.270047847001196
18	59104471	59142463	2	neutral	AA	100	somatic	0	0.00886761332319911	0.0993644054539209
18	59278601	59292848	2	neutral	AA	100	germline	1	0.55705461384113	0.496774417189847
18	61619858	61638854	2	neutral	AA	100	somatic	0	0.318389841049052	0.141089093119854
18	63528956	63543203	2	neutral	AA	100	somatic	0	0.0091735243017923	0.0325075893740626
18	65373151	65414309	2	neutral	AA	100	somatic	0	0.000364701726377433	0.000765115420446105
18	67291747	67299662	1	loss	A	-1	germline	1	0.00095071002543064	0.0011807192822082
18	77899430	77980163	2	neutral	AA	31.2813	germline	1	0.130430746438413	0.103916289511695
18	78898303	78912550	2	neutral	AA	15.2502	somatic	0	0.837074816070467	0.683338592018439
18	79520422	79522005	1	loss	A	-1	somatic	0	0.0833438875522976	0.270174919257412
18	79863933	79954164	2	neutral	AA	11.52	somatic	0	0.0644044367002248	0.0681383419697938
19	4918381	5024442	2	neutral	AA	27.8663	somatic	0	5.74718603581797e-18	0
19	5024442	5102009	2	neutral	AA	47.0056	germline	1	0.492038997910673	0.829904514174022
19	6134125	6135708	1	loss	A	-1	somatic	0	0.13484091950294	0.350546255332716
19	6135708	6202194	2	neutral	AA	34.112	somatic	0	4.63521797476163e-13	6.40598685208715e-14
19	6202194	6205360	1	loss	A	-1	somatic	0	0.034621956068233	0.0673414921707275
19	6324085	6363660	2	neutral	AA	100	somatic	0	9.58584114748617e-12	9.69224700497762e-14
19	7449598	7451181	12	gain	AAAAAAAABBBB	15.9715	germline	1	0.0832707089650916	0.270047847001184
19	8138203	8192025	1	loss	A	15.3279	somatic	0	7.98652774233005e-16	1.11022302462516e-16
19	8192025	8193608	1	loss	A	-1	somatic	0	0.132289077744017	0.346903767491221
19	8882213	8969278	2	neutral	AA	0.896626	somatic	0	0.191690042353602	0.181324516806424
19	9024683	9116497	2	neutral	AA	19.8116	somatic	0	1.55219820778335e-22	0
19	12121031	12168521	2	neutral	AA	25.4639	somatic	0	2.64558950928114e-10	2.4137469800678e-11
19	14592094	14598426	2	neutral	AA	8.14121	somatic	0	0.121162125377014	0.231978578195134
19	21562043	21585788	2	neutral	AA	0.315223	somatic	0	0.0810919886133007	0.192292927291689
19	22407365	22440608	2	neutral	AA	4.28683	somatic	0	2.77465257473009e-06	2.7302081655467e-06
19	24330710	24351289	3	gain	AAB	0.698748	germline	1	5.7622091151831e-09	5.72406344545584e-10
19	24351289	24405111	3	gain	AAB	3.52453	germline	1	2.40928828181544e-21	0
19	24414609	24417775	2	neutral	AA	11.983	germline	1	0.602699022380621	0.712942214108197
19	27338410	27339993	4	gain	AAAB	7.30901	germline	1	0.0832865792626278	0.270075409234262
19	27347908	27379568	5	gain	AAABB	0.257859	germline	1	4.27718771706195e-12	2.54241072639161e-14
19	27379568	27382734	2	neutral	AA	6.30808	somatic	0	0.434235683331957	0.700758311235085
19	27382734	27389066	5	gain	AAABB	0.785366	germline	1	0.000532458197666	0.000671316090340213
19	27389066	27392232	3	gain	AAB	1.79858	germline	1	0.0143212126223628	0.0366601191401449
19	27392232	27398564	5	gain	AAABB	0.753522	germline	1	0.000532477560995166	0.000671316090340213
19	27398564	27400147	3	gain	AAB	2.90516	germline	1	0.0833675171544632	0.270215941310537
19	29511869	29515035	0	loss	-	-1	germline	1	0.0143239633297166	0.036676500887466
19	29685999	29749319	2	neutral	AA	71.7799	somatic	0	7.78554126864687e-05	0.000591791886698001
19	33030878	33121109	2	neutral	AA	21.8271	somatic	0	3.00388043562351e-18	1.11022302462516e-16
19	33318984	33448790	2	neutral	AA	25.2758	somatic	0	0.394955031509878	0.186548451378761
19	35361054	35370552	1	loss	A	-1	germline	1	8.25213862834122e-05	3.82034423070943e-05
19	38853152	38883229	2	neutral	AA	27.2839	somatic	0	3.77438109766021e-08	1.65258587925265e-08
19	44667511	44669094	0	loss	-	-1	somatic	0	0.0832873534861535	0.270076753785974
19	47831928	47890499	2	neutral	AA	15.2162	somatic	0	1.10617435966286e-12	4.86055640180894e-11
19	48458796	48735821	2	neutral	AA	33.4175	somatic	0	7.10690535810344e-48	0
19	50342566	50410635	2	neutral	AA	19.2733	somatic	0	1.05401931776596e-08	8.62961824221742e-09
19	51832169	51841667	2	neutral	AA	54.5678	germline	1	0.0519861656658625	0.07983663932202
19	56098354	56118933	2	neutral	AA	14.8484	germline	1	0.780756232816188	0.266083466223707
20	60154	66486	7	gain	-	-1	germline	1	0.00270108124411949	0.00495942728620336
20	1581417	1613077	1	loss	A	-1	germline	1	8.13184208931254e-10	5.31596988651017e-12
20	1942341	1956588	2	neutral	AA	36.3786	somatic	0	0.858655846055863	0.969449721515946
20	4177537	4209197	2	neutral	AA	18.1893	somatic	0	0.756128464284618	0.884330091959635
20	9627806	9667381	2	neutral	AA	54.5678	somatic	0	0.000603175958781385	0.00301650877588144
20	10023556	10044135	2	neutral	AA	78.787	somatic	0	0.135642616871008	0.39387933336417
20	11373855	11411847	2	neutral	AA	33.4024	somatic	0	0.201649882397105	0.252663991918428
20	23053229	23130796	2	neutral	AA	14.0707	somatic	0	3.20614071544574e-07	9.0654046276395e-06
20	28774191	28788438	5	gain	-	-1	germline	1	2.21165530904405e-05	1.2303610250175e-05
20	28804268	28831179	8	gain	-	-1	germline	1	4.24486139071205e-10	1.02337027740873e-11
20	28870754	28872337	10	gain	-	-1	germline	1	0.0832714830691085	0.27004919145272
20	28897665	28899248	13	gain	-	-1	somatic	0	0.0832707089650916	0.270047847001184
20	28943572	28956236	4	gain	-	-1	somatic	0	0.00270252846789279	0.00496163118474102
20	29204767	29260172	1	loss	A	-1	germline	1	3.19849566865057e-05	1.37302199669787e-05
20	29263338	29264921	8	gain	-	-1	germline	1	0.0832757407454028	0.270056586023506
20	29329824	29331407	9	gain	-	-1	germline	1	0.0832738054161357	0.270053224836645
20	29407391	29410557	4	gain	-	-1	germline	1	0.0143141240586553	0.0366448475495925
20	29887040	29891789	3	gain	-	-1	germline	1	0.0286592765160011	0.0821480390113534
20	29891789	29893372	5	gain	-	-1	germline	1	0.0832830953289076	0.270069358812081
20	30813095	30838423	8	gain	-	-1	germline	1	0.000532228039462261	0.000671140862249509
20	30939735	30942901	5	gain	-	-1	germline	1	0.014312230225268	0.036640616648084
20	31166104	31167687	6	gain	-	-1	germline	1	0.0832811598611856	0.270065997509177
20	31183517	31189849	7	gain	-	-1	germline	1	0.000532292560445811	0.00067128238929981
20	32058916	32103240	2	neutral	AA	30.0045	somatic	0	0.000650273309442966	0.000552009041990154
20	33464620	33485199	2	neutral	AA	57.4132	somatic	0	8.95166825259645e-06	2.92276940286884e-05
20	33643499	33645082	1	loss	A	-1	somatic	0	0.134460517552611	0.350004807833907
20	36825329	36826912	1	loss	A	-1	somatic	0	0.129141513397535	0.342371264780408
20	37646906	37680149	2	neutral	AA	54.5678	somatic	0	0.465926208797052	0.400900377767099
20	38422576	38849986	2	neutral	AA	11.9911	somatic	0	0.311117475201388	0.0223085267593972
20	39247319	39375542	2	neutral	AA	18.1893	somatic	0	1.96330662017203e-11	3.59955065754036e-10
20	43466014	43483427	2	neutral	AA	21.8307	somatic	0	0.00827277056559739	0.0145532418704857
20	47292125	47344364	2	neutral	AA	27.2871	somatic	0	0.000778215250020086	0.00183126409271528
20	54496358	54510605	2	neutral	AA	27.2839	somatic	0	0.179791040067301	0.0318808813251071
20	58385789	58483935	2	neutral	AA	100	somatic	0	0.545370591661756	0.0808561101327305
20	59264354	59307095	2	neutral	AA	44.6214	somatic	0	4.42463040959787e-06	0.000148119365362076
20	62838768	62922667	2	neutral	AA	67.8254	somatic	0	1.16392378158004e-06	2.08697258441415e-06
20	63870884	63943702	2	neutral	AA	41.8576	somatic	0	8.46251255886287e-11	4.48455050872099e-10
21	7918166	7926081	5	gain	-	-1	somatic	0	0.000107626642862667	9.0865411237484e-05
21	10272087	10273670	37	gain	-	-1	germline	1	0.0832676126073178	0.270042469243898
21	10650424	10655173	4	gain	AAAA	5.65336	germline	1	0.00271342760356021	0.00499776804503749
21	10655173	10656756	9	gain	AAAAAAABB	100	germline	1	0.0832738054161357	0.270053224836645
21	10656756	10658339	3	gain	AAA	100	germline	1	0.0833070981559562	0.270111041505165
21	10658339	10661505	5	gain	AAAAA	100	germline	1	0.0143115582730039	0.036640616648084
21	10661505	10667837	4	gain	AAAA	100	germline	1	0.000533220316802268	0.000673050461440727
21	10667837	10669420	5	gain	AAAAA	17.6265	germline	1	0.0832830953289076	0.270069358812081
21	10669420	10704246	3	gain	AAA	38.5962	somatic	0	9.594519541051e-15	0
21	10704246	10707412	7	gain	AAAAABB	13.0247	germline	1	0.0143103976937316	0.036640248763804
21	10707412	10715327	3	gain	AAA	2.87716	germline	1	0.000107933263590528	9.11795415980965e-05
21	10715327	10716910	5	gain	AAABB	1.78559	germline	1	0.0832827082324483	0.270068686549057
21	10716910	10731157	3	gain	AAB	1.94361	germline	1	2.04312472265122e-07	3.06044591891208e-08
21	10731157	10732740	6	gain	AAAAAA	5.40345	germline	1	0.0832815469518152	0.270066669767315
21	10732740	10739072	3	gain	AAA	2.30982	germline	1	0.000532908026539059	0.00067188250503758
21	10751736	10754902	11	gain	AAAAAAABBBB	3.30215	germline	1	0.0143079546403177	0.0366341791397485
21	10762817	10764400	3	gain	AAA	27.0037	germline	1	0.0833067109691272	0.270110369166408
21	13935149	13936732	2	neutral	AA	9.92218	germline	1	0.703282434355077	0.850833514523434
21	16159264	16175094	2	neutral	AA	100	somatic	0	0.0900458293912159	0.127121035407454
21	18161759	18164925	2	neutral	AA	54.5678	somatic	0	0.0510908878094623	0.125730104845152
21	18278901	18282067	2	neutral	AA	54.5678	somatic	0	0.114871843471937	0.173404670682007
21	20586915	20588498	0	loss	-	-1	germline	1	0.0832877406001026	0.270077426063656
21	23965037	23974535	2	neutral	AA	54.5678	somatic	0	0.984832626233384	0.209698088053699
21	25157036	25196611	2	neutral	AA	54.5678	somatic	0	0.884254410985589	0.564137231965796
21	25312170	25375490	2	neutral	AA	27.3789	somatic	0	0.00849855437691074	0.0208987951768537
21	27320997	27328912	2	neutral	AA	54.5678	somatic	0	0.723584733039727	0.883142140241513
21	27613852	27621767	1	loss	A	-1	germline	1	0.000140144986649585	0.000115761118171798
21	28082420	28090335	2	neutral	AA	36.3786	somatic	0	0.141383978075675	0.294255566417046
21	28451259	28463923	2	neutral	AA	54.5678	somatic	0	0.22261789557823	0.122201409450022
21	29866461	29869627	2	neutral	AA	54.5678	somatic	0	0.568506767038834	0.876824001362677
21	29947194	29950360	2	neutral	AA	54.5678	somatic	0	0.138000398752848	0.192218689034606
21	30032676	30046923	2	neutral	AA	41.9302	somatic	0	0.997132450849544	0.986166650001774
21	30920739	30955565	2	neutral	AA	54.5678	somatic	0	0.969690986862197	0.943221021738609
21	31129695	31147108	2	neutral	AA	54.5678	somatic	0	0.422656543562727	0.902596554342364
21	31257918	31262667	2	neutral	AA	54.568	somatic	0	0.303815399224522	0.487953557185963
21	32329609	32342273	2	neutral	AA	36.3786	somatic	0	0.929053988535775	0.679517296860024
21	36112979	36158886	2	neutral	AA	27.284	germline	1	2.74412883583765e-08	1.91254571069166e-08
21	36364676	36371008	2	neutral	AA	54.5678	somatic	0	0.0207202190718098	0.0280441394302561
21	38906974	38938634	2	neutral	AA	9.42058	somatic	0	0.0100393772806496	0.0111992734521528
21	40615031	40621363	2	neutral	AA	54.5678	somatic	0	0.940402104803525	0.915066721281536
21	40651440	40654606	2	neutral	AA	100	somatic	0	0.0281584736192301	0.0732615713385364
21	40790744	40795493	2	neutral	AA	54.5678	somatic	0	0.666096342239869	0.762296161044692
21	41020279	41107344	2	neutral	AA	12.024	somatic	0	0.140396500922382	0.363218059789855
21	41473017	41476183	1	loss	A	-1	somatic	0	0.0192299038076347	0.0510416278746372
21	41566414	41574329	2	neutral	AA	18.1893	somatic	0	0.507667322115428	0.714065421568202
21	41803864	41808613	2	neutral	AA	4.53273	somatic	0	0.247174940375611	0.726460230519035
21	42145792	42175869	2	neutral	AA	27.3004	germline	1	0.59564246102187	0.656355053132424
21	43366285	43581573	2	neutral	AA	60.1229	somatic	0	0.0697157173359816	0.0944740678374101
21	44917625	44928706	2	neutral	AA	36.3786	somatic	0	0.908482686767405	0.999330465426317
21	45340286	45357699	2	neutral	AA	13.7367	somatic	0	0.946824118592606	0.66889048182564
21	45577736	45590400	2	neutral	AA	21.8282	somatic	0	0.306408894047402	0.360989768870605
21	45967154	45970320	1	loss	A	-1	germline	1	0.0150168401032596	0.0387531000899383
22	11210806	11213972	5	gain	-	-1	germline	1	0.0143122913132175	0.0366417203203148
22	11612888	11619220	3	gain	-	-1	germline	1	0.0143183401588397	0.036654414641713
22	11619220	11630301	4	gain	AABB	100	somatic	0	0.00270243938751276	0.00496088399992956
22	12692494	12694077	9	gain	AAAAAABBB	100	germline	1	0.0832738054161357	0.270053224836645
22	15934478	16567678	2	neutral	AA	3.20323	germline	1	0.227218470121139	0.0342189594793763
22	18081026	18109520	2	neutral	AA	10.5132	germline	1	0.109560790314856	0.0489326348191781
22	18138014	18142763	4	gain	AAAA	100	germline	1	0.00270238371363773	0.00496125757944144
22	18142763	18147512	1	loss	A	-1	somatic	0	0.00466256436778417	0.00813821152643335
22	31213594	31352898	2	neutral	AA	23.9081	somatic	0	0.038639686244744	0.114181254730063
22	34468242	34469825	0	loss	-	-1	germline	1	0.0833024520102152	0.270102973520706
22	35367386	35484528	2	neutral	AA	4.26005	somatic	0	0.00133521311016735	0.00203572724310153
22	36380506	36451741	2	neutral	AA	100	somatic	0	3.20199272699805e-14	2.99760216648792e-15
22	38963962	38989290	1	loss	A	-1	germline	1	7.30009927749842e-11	1.26743060491208e-12
22	42520963	42554206	3	gain	AAB	5.03909	germline	1	2.52489044156616e-08	6.56475784843735e-08
22	49752107	49756856	2	neutral	AA	36.3786	germline	1	0.896151323872709	0.673463563160673
X	47151238	47162319	2	gain	-	-1	germline	1	0.0131801435679627	0.103343302128307
X	78268269	78269852	4	gain	AAAA	73.7684	germline	1	0.0832869663736618	0.270076081509501
Y	10113787	10143864	2	gain	AB	1.86218	somatic	0	0.175578179282492	0.039175547904987
Y	10623513	10663088	2	gain	AA	41.7964	somatic	0	0.0272607696918341	0.0966020337247823
Y	10666254	10674169	4	gain	-	-1	germline	1	0.0204917502700596	0.138976032556041
Y	10677335	10754902	2	gain	-	-1	germline	1	0.0596763767196748	0.137555229033311
Y	10754902	10756485	4	gain	-	-1	germline	1	0.0832865792626278	0.270075409234262
Y	10756485	10759651	2	gain	-	-1	germline	1	0.814426689379559	0.838003351741354
Y	10759651	10761234	9	gain	-	-1	germline	1	0.0832738054161357	0.270053224836645
Y	10761234	10762817	2	gain	-	-1	germline	1	0.827624352143171	0.909353803868826
Y	10762817	10764400	5	gain	-	-1	germline	1	0.0832850308330662	0.270072720145522
Y	10764400	10765983	3	gain	-	-1	germline	1	0.0834640287061894	0.270383439135365
Y	10767566	10770732	4	gain	-	-1	germline	1	0.0143163236264504	0.0366477910375202
Y	10775481	10777064	6	gain	-	-1	germline	1	0.083280385684299	0.270064652996566
Y	10777064	10781813	3	gain	-	-1	germline	1	0.247753423422325	0.14051621619527
Y	10784979	10786562	6	gain	-	-1	germline	1	0.083280385684299	0.270064652996566
Y	10788145	10789728	3	gain	-	-1	germline	1	0.0832997418554668	0.270098267277649
Y	10789728	10796060	2	gain	-	-1	germline	1	0.890275055470083	0.942580635350696
Y	10796060	10797643	9	gain	-	-1	germline	1	0.0832738054161357	0.270053224836645
Y	10797643	10800809	3	gain	-	-1	germline	1	0.0145717676017709	0.0371821180838461
Y	10800809	10802392	5	gain	-	-1	germline	1	0.0832865792626278	0.270075409234262
Y	10807141	10808724	4	gain	-	-1	germline	1	0.0832954831851662	0.270090871873797
Y	10821388	10826137	3	gain	-	-1	germline	1	0.104370988767477	0.139041559867498
Y	10845133	10846716	4	gain	-	-1	germline	1	0.0832916118197572	0.270084148907645
Y	10887874	10889457	3	gain	-	-1	germline	1	0.0833070981559562	0.270111041505165
Y	10924283	10927449	4	gain	-	-1	germline	1	0.0143138185867064	0.0366437437949487
Y	10935364	10938530	3	gain	-	-1	germline	1	0.0143230463754871	0.0366689534443772
Y	10938530	10986020	2	gain	-	-1	somatic	0	6.38171904257614e-05	2.27011005327071e-06
Y	10986020	10989186	11	gain	-	-1	germline	1	0.0143092982741622	0.0366385933245365
Y	10989186	10998684	2	gain	-	-1	germline	1	0.0260218544322373	0.0591752349983823
Y	10998684	11000267	10	gain	-	-1	germline	1	0.0832714830691085	0.27004919145272
Y	11000267	11005016	3	gain	-	-1	germline	1	0.0143660153676484	0.0367850764544134
Y	11012931	11014514	21	gain	-	-1	germline	1	0.083268773730553	0.270044485893719
Y	11014514	11039842	2	gain	AA	8.98919	germline	1	0.00749644519442686	0.0126510120611516
Y	11291539	11307369	21	gain	AAAAAAAAAAAAABBBBBBBB	17.806	germline	1	4.32281259027034e-08	4.12572342955997e-09
Y	11307369	11308952	4	gain	AABB	12.154	germline	1	0.0832943217602391	0.270088854971125
Y	11313701	11332697	6	gain	AAAABB	0.747385	germline	1	0.000107594866793434	9.08608496636987e-05
Y	11332697	11334280	33	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBB	16.4583	germline	1	0.0832676126073178	0.270042469243898
Y	11687289	11688872	4	gain	AAAA	8.91391	germline	1	0.0832865792626278	0.270075409234262
Y	11688872	11690455	8	gain	AAAAAABB	37.1911	germline	1	0.0832757407454028	0.270056586023506
Y	11717366	11718949	4	gain	AAAA	5.59071	germline	1	0.0832885148323733	0.270078770622671
Y	11720532	11723698	24	gain	AAAAAAAAAAAAAAABBBBBBBBB	51.4728	germline	1	0.0143070996585466	0.0366332595764874
Y	11730030	11731613	4	gain	AABB	100	germline	1	0.083298580382439	0.270096250334668
Y	11742694	11747443	2	gain	AA	7.36654	germline	1	0.137923708706322	0.170332251522288
Y	11747443	11749026	13	gain	AAAAAAAAABBBB	26.3067	germline	1	0.0832707089650916	0.270047847001184
Y	26637141	26640307	4	gain	AABB	18.606	germline	1	0.0143146739226549	0.0366470551461455
Y	56826534	56837615	21	gain	AAAAAAAAAAAAAABBBBBBB	18.4872	germline	1	4.5943412413207e-06	1.66359813880135e-06
Y	56839198	56851862	8	gain	AAAAAAAB	4.04116	germline	1	0.000107567821170277	9.08346248353897e-05
