chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	5670683	5676649	3	gain	AAB	1.15584	germline	1	0.0143167525189259	0.0366491669186262
1	8722292	9083235	2	neutral	AA	14.2857	somatic	0	1.13953130540982e-06	2.51657478349543e-05
1	9894611	10610531	2	neutral	AA	100	somatic	0	6.51924920826097e-26	0
1	16132064	16385619	2	neutral	AA	82.6873	somatic	0	0.000436858029148646	4.12372436218167e-05
1	16612327	16615310	7	gain	AAAAABB	76.7973	germline	1	0.0832762443999815	0.270057160241963
1	16904661	16943440	3	gain	AAB	1.29384	germline	1	9.69645435561856e-07	2.2722015347032e-07
1	55662780	55668746	1	loss	A	-1	germline	1	0.0143190671128893	0.0366631062601739
1	65357530	65476850	2	neutral	AA	100	somatic	0	0.0474702212611979	0.156747354928371
1	74721167	74804691	2	neutral	AA	83.6801	somatic	0	0.241045485561433	0.0821180206766124
1	75413223	75690642	2	neutral	AA	27.9827	somatic	0	0.0178894649833504	0.104806842748043
1	84693336	84741064	2	neutral	AA	100	somatic	0	0.0851321360502123	0.448699848118462
1	109643148	109649114	1	loss	A	-1	germline	1	0.0158168370809877	0.0412130757237393
1	125080173	125083156	7	gain	-	-1	germline	1	0.0832755113598623	0.270055887140869
1	125163697	125166680	5	gain	-	-1	germline	1	0.0832865075104995	0.270074984117279
1	159250438	159671041	2	neutral	AA	6.352	somatic	0	0.0251678265025935	0.036660851733794
1	160876173	160926884	2	neutral	AA	36.3786	somatic	0	0.00281795046314084	0.0143326489750015
1	169258403	169273318	1	loss	A	-1	germline	1	0.000289628238477001	0.00023833843916532
1	179997203	180140387	2	neutral	AA	18.2859	somatic	0	0.0216544484687892	0.0302389353846599
1	195580395	195723579	2	neutral	AA	27.2882	somatic	0	0.00492280578203693	0.00617974747979955
1	217350329	217380159	3	gain	AAB	25.9038	germline	1	9.67278620626306e-07	2.26254592949893e-07
1	222800270	223390904	2	neutral	AA	10.7878	somatic	0	2.64890909102334e-06	8.59969070650113e-05
1	228068248	228074214	1	loss	A	-1	germline	1	0.0233157697242522	0.0647724462026273
1	228074214	228127908	2	neutral	AA	100	somatic	0	0.93822912337869	0.943628109924223
1	228145806	228664848	2	neutral	AA	21.5588	somatic	0	0.239875059918355	0.0690055485472287
1	229676085	229679068	0	loss	-	-1	germline	1	0.0832689142340017	0.270044429428169
1	234777015	234782981	7	gain	AAAAABB	4.16293	germline	1	0.0143095793748717	0.0366366254760014
1	236095501	236098484	5	gain	AAABB	11.4635	germline	1	0.083284308186282	0.270071164643139
1	248904503	248919418	3	gain	-	-1	somatic	0	0.000543085541148546	0.000696888054729228
2	11932	35796	3	gain	-	-1	somatic	0	9.74713288296239e-07	2.31940645245565e-07
2	3179878	3182861	6	gain	-	-1	germline	1	0.0832799096789834	0.270063525813147
2	13569667	13578616	1	loss	A	-1	germline	1	0.0042702222175235	0.00711592755088319
2	34471548	34504361	1	loss	A	-1	germline	1	2.82048578814315e-07	3.44022345055706e-08
2	52521681	52557477	1	loss	A	-1	germline	1	6.07206737695394e-08	5.03717823008287e-09
2	59394513	59403462	1	loss	A	-1	germline	1	0.00585616987453459	0.0102604412238869
2	68513544	68519510	1	loss	A	-1	germline	1	0.0218346661681618	0.0600324655174017
2	89773385	89791283	4	gain	-	-1	germline	1	0.000107660774481278	9.0893790258062e-05
2	89797249	89815147	4	gain	-	-1	germline	1	0.000107665656024681	9.08916298943963e-05
2	89815147	89818130	3	gain	-	-1	germline	1	0.0833158363292061	0.270125914206823
2	89818130	89824096	5	gain	-	-1	germline	1	0.0143132812467943	0.0366428957278634
2	89824096	89827079	9	gain	-	-1	germline	1	0.0832711132289134	0.270048248626305
2	89827079	89841994	30	gain	-	-1	germline	1	0.00010751767541456	9.08052553368899e-05
2	89841994	89850943	4	gain	-	-1	germline	1	0.00270210394901156	0.00496015627195989
2	91411052	91414035	4	gain	-	-1	germline	1	0.0832909063000743	0.270082623183844
2	109198681	109201664	16	gain	-	-1	germline	1	0.083265982313961	0.270039337225312
2	117040988	117046954	1	loss	A	-1	germline	1	0.0212853873771336	0.058283944632294
2	125685722	125694671	1	loss	A	-1	germline	1	0.00436092318486964	0.00943608736889145
2	135114985	135117968	4	gain	-	-1	germline	1	0.0832894400159729	0.270080076810798
2	146104357	146107340	0	loss	-	-1	germline	1	0.083274045295305	0.270053340951827
2	169464230	169470196	1	loss	A	-1	germline	1	0.0220279625091309	0.055780308624818
2	176399705	176408654	1	loss	A	-1	germline	1	0.0145694077587243	0.0371807219219334
2	179203725	179212674	1	loss	A	-1	germline	1	0.00462317980585038	0.00777188494388603
2	239221685	239224668	2	neutral	AA	100	somatic	0	0.326543014494749	0.571692941693553
2	239591577	239871979	2	neutral	AA	21.2113	germline	1	0.0154696383286604	0.0118098184218118
2	240614746	240617729	2	neutral	AA	100	somatic	0	0.316959000410098	0.562347174927935
2	241050264	241053247	2	neutral	AA	100	somatic	0	0.876724683803664	0.927991994003449
2	241100975	241115890	2	neutral	AA	36.4656	somatic	0	0.937774188122197	0.933536775254625
2	241587204	241605102	2	neutral	AA	19.44	somatic	0	0.386729892136178	0.524790089485343
3	4047931	4059863	1	loss	A	-1	germline	1	0.00115688838588471	0.00154102047292826
3	13331027	13378755	2	neutral	AA	21.8276	germline	1	0.862749195109739	0.816955131577701
3	14873238	15102929	2	neutral	AA	12.2742	somatic	0	0.479735876199311	0.814989378500527
3	20713952	20928728	2	neutral	AA	30.7576	somatic	0	0.0188512012335871	0.0810921014986004
3	22602191	22685715	2	neutral	AA	100	somatic	0	0.134485883259455	0.40499046631477
3	23926643	23932609	2	neutral	AA	100	somatic	0	0.0797922563887476	0.169148260779057
3	28281823	28601004	2	neutral	AA	100	somatic	0	0.00425538291245513	0.0242829156589148
3	32061284	32067250	1	loss	A	-1	germline	1	0.0209157283220395	0.0508814759972193
3	39700747	39733560	2	neutral	AA	100	germline	1	0.38428989879438	0.283830801248894
3	41058012	41123638	2	neutral	AA	36.2614	somatic	0	0.00923025092334255	0.00663535358456546
3	51068960	51083875	2	neutral	AA	100	somatic	0	0.860116123176346	0.744421531412638
3	53177941	53336040	2	neutral	AA	38.1904	somatic	0	0.241438350850515	0.146378636070405
3	55078112	55110925	2	neutral	AA	36.4118	somatic	0	0.192244089065565	0.505980784495558
3	59305023	59424343	2	neutral	AA	15.5927	somatic	0	0.0774584364552671	0.224604587243871
3	66687948	66735676	2	neutral	AA	55.5737	somatic	0	0.0885731742070358	0.21076437391404
3	68131720	68170499	2	neutral	AA	51.9187	somatic	0	0.111595743024398	0.133968438176332
3	68585136	68588119	0	loss	-	-1	germline	1	0.0832689142340017	0.270044429428169
3	68689541	68692524	1	loss	A	-1	germline	1	0.0832879737527813	0.27007753045528
3	68698490	68704456	2	neutral	AA	100	germline	1	0.561586345850502	0.726320503410728
3	68716388	68823776	2	neutral	AA	56.5324	germline	1	0.0852728622965392	0.0183312304344149
3	76346902	76388664	2	neutral	AA	36.3906	somatic	0	0.367536299225217	0.284441809805662
3	80013009	80015992	0	loss	-	-1	germline	1	0.0832718462376709	0.270049521701117
3	87458577	87494373	2	neutral	AA	34.3165	germline	1	0.212532350272158	0.558958017370504
3	90704081	93800435	2	neutral	AA	7.3986	somatic	0	0.00384440019316426	0.0662645884995052
3	96619370	96622353	1	loss	A	-1	germline	1	0.0833217030967435	0.270136101065904
3	98555337	98871535	2	neutral	AA	35.1681	somatic	0	0.312769555594736	0.243977894420537
3	99178784	99184750	1	loss	A	-1	germline	1	0.0166124448384738	0.0419541830459987
3	99223529	99232478	1	loss	A	-1	germline	1	0.0202297311483199	0.0472681653440494
3	103110378	103119327	2	neutral	AA	100	somatic	0	0.182639417847644	0.460247426927223
3	104706283	104718215	2	neutral	AA	100	somatic	0	0.590042805462297	0.710740119248634
3	111027260	111101835	2	neutral	AA	100	somatic	0	0.477484138844173	0.196939459424205
3	130267610	130345168	2	neutral	AA	32.8316	somatic	0	0.0798603022069519	0.256255961251327
3	136305202	136308185	1	loss	A	-1	germline	1	0.0832887068817633	0.270078803630851
3	139112205	139118171	1	loss	A	-1	somatic	0	0.0281837226224022	0.0553009946983662
3	145946258	145982054	2	neutral	AA	27.2847	somatic	0	0.298009413807948	0.712063312530429
3	162794242	162907596	1	loss	A	-1	somatic	0	9.45074953085873e-20	0
3	178971051	179111252	2	neutral	AA	37.1286	somatic	0	0.845543781712952	0.765898979028563
3	187392060	187439788	2	neutral	AA	16.0044	somatic	0	0.179105613386352	0.413654054594087
3	191347518	191353484	1	loss	A	-1	germline	1	0.0195251222453793	0.0449287631449014
3	193158199	193167148	1	loss	A	-1	germline	1	0.00313293976811019	0.00594799379504118
3	197725172	197757985	2	neutral	AA	54.5678	somatic	0	0.828566001041467	0.827460474450717
4	68609	86507	2	neutral	AA	27.2839	somatic	0	0.000265121006216241	0.000122221736069572
4	125286	134235	1	loss	A	-1	germline	1	0.0191677278423437	0.0515770157885378
4	6893713	6899679	1	loss	A	-1	germline	1	0.0197467762396899	0.0534021006670076
4	11627734	11756003	2	neutral	AA	55.4927	somatic	0	0.193634122962329	0.282967368494709
4	31592953	31670511	2	neutral	AA	49.3305	somatic	0	0.00458895989778936	0.0218957345991853
4	32651918	32693680	2	neutral	AA	71.7516	somatic	0	0.0662487986008822	0.0686784545310792
4	40294364	40297347	4	gain	AAAA	14.418	germline	1	0.0832909063000743	0.270082623183844
4	49147908	49156857	77	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBBBBBBBBBBBB	100	germline	1	0.0143061096370087	0.0366314009832495
4	49646069	49658001	20	gain	AAAAAAAAAAAAAABBBBBB	59.381	somatic	0	0.0026998908493158	0.0049576810369053
4	61073942	61076925	0	loss	-	-1	germline	1	0.0832667152861311	0.270040610269458
4	62804082	62810048	1	loss	A	-1	germline	1	0.0193604807589982	0.0440258670250498
4	62887606	62932351	2	neutral	AA	54.7091	somatic	0	0.0435581776794843	0.0825547994076482
4	63200821	63203804	0	loss	-	-1	germline	1	0.0832667152861311	0.270040610269458
4	63827251	63851115	1	loss	A	-1	germline	1	2.2162308809161e-05	6.64484878820648e-06
4	65855691	65867623	2	neutral	AA	36.3786	somatic	0	0.496629340858894	0.849341496208544
4	67961689	67982570	2	neutral	AA	54.5678	somatic	0	0.216048536620365	0.22041616794593
4	68519510	68620932	1	loss	A	-1	germline	1	2.69482281544681e-14	0
4	70619542	70625508	1	loss	A	-1	germline	1	0.0208634252605577	0.0569286174396055
4	71228074	71254921	2	neutral	AA	100	somatic	0	0.603178854779587	0.45107404481355
4	74560085	74563068	1	loss	A	-1	germline	1	0.0833114364731453	0.270118274246526
4	82861774	83049703	2	neutral	AA	100	somatic	0	0.037393643775058	0.110688566658084
4	88195378	88213276	2	neutral	AA	54.5678	somatic	0	0.860396708785248	0.997258452647329
4	89800232	89847960	2	neutral	AA	36.5887	somatic	0	0.0713712330083319	0.0234903612670062
4	91154514	91160480	1	loss	A	-1	germline	1	0.0276154557551138	0.0544428336547206
4	93654268	93672166	2	neutral	AA	100	somatic	0	0.284619344780088	0.46309639460028
4	101240037	101439898	2	neutral	AA	100	somatic	0	1.64309824009521e-06	3.39610296353765e-05
4	108014430	108091988	2	neutral	AA	24.2539	somatic	0	0.0369605031229559	0.0615764626782825
4	109288171	109753519	2	neutral	AA	98.7473	somatic	0	2.12164835840449e-08	5.93011305838331e-07
4	111662639	112172732	2	neutral	AA	100	somatic	0	2.17591783180333e-09	3.10780560175417e-08
4	114254866	114260832	1	loss	A	-1	somatic	0	0.020307521894746	0.0457795537918133
4	118204358	118210324	1	loss	A	-1	somatic	0	0.0224578776403039	0.0564610996638814
4	122890651	122923464	2	neutral	AA	36.3786	somatic	0	0.0235996459538943	0.0307761728456355
4	123323186	123341084	2	neutral	AA	100	somatic	0	0.361323290827138	0.802900697086487
4	129465183	129503962	2	neutral	AA	27.3028	somatic	0	0.00639118125995454	0.00593801155032081
4	137170272	137179221	1	loss	A	-1	germline	1	0.00534175617172889	0.00957290375514575
4	147592874	147753956	2	neutral	AA	46.1975	somatic	0	0.954093990317705	0.411208465604582
4	151181423	151193355	2	neutral	AA	54.5678	somatic	0	0.816525200673062	0.952116323755164
4	151339522	151369352	2	neutral	AA	36.3786	somatic	0	0.00707016899253878	0.00463641385591196
4	153642398	153815412	2	neutral	AA	19.8332	somatic	0	0.127328863526968	0.158323333053975
4	154695397	154734176	2	neutral	AA	54.5678	somatic	0	0.424839861319385	0.692676561285504
4	165079220	165085186	1	loss	A	-1	somatic	0	0.0208933908657204	0.0566662162502577
4	172509873	172512856	0	loss	-	-1	somatic	0	0.0832689142340017	0.270044429428169
4	174738174	174914171	2	neutral	AA	43.2431	somatic	0	0.000568729894807409	0.000325671085540269
4	179108269	179206708	2	neutral	AA	48.7438	somatic	0	0.37722438928342	0.511143503327867
4	179451314	179528872	2	neutral	AA	54.5678	somatic	0	0.0396782915271639	0.0520592080612472
4	182028626	182043541	2	neutral	AA	100	somatic	0	0.784978155863209	0.647671978330361
4	186177979	186207809	2	neutral	AA	25.0094	somatic	0	0.687563522514062	0.717972088950133
4	186691055	186878984	2	neutral	AA	64.4357	somatic	0	0.00322935875907456	0.010854122032869
4	189268367	189277316	1	loss	A	-1	somatic	0	0.00644593197166739	0.00985167956367494
5	414637	417620	4	gain	AAAB	6.74043	somatic	0	0.08329457210181	0.270088989193127
5	757682	763648	1	loss	A	-1	somatic	0	0.0164661371967177	0.0408447107751664
5	2419213	2490805	2	neutral	AA	27.8242	somatic	0	0.202573730492928	0.515251541080092
5	2857714	2863680	2	neutral	AA	100	somatic	0	0.218515013427536	0.214210964802637
5	11120624	11165369	2	neutral	AA	64.6986	somatic	0	0.797879392153382	0.25293103020375
5	12811985	12820934	1	loss	A	-1	germline	1	0.00432901831006794	0.00730631423917449
5	13196792	13378755	2	neutral	AA	40.4616	somatic	0	0.579913524030786	0.837442460160136
5	14029049	14035015	2	neutral	AA	100	somatic	0	0.619106515548353	0.809122497675756
5	15917288	15938169	2	neutral	AA	27.2882	somatic	0	0.0523075185410379	0.0367435998566352
5	16964321	17029947	2	neutral	AA	21.4035	somatic	0	0.00537939832587613	0.00225559822340626
5	17713054	17716037	4	gain	AAAB	25.6952	somatic	0	0.08329457210181	0.270088989193127
5	18029252	18044167	2	neutral	AA	100	somatic	0	0.735534328722519	0.975211825260858
5	19995049	20690088	3	gain	AAB	0.22955	germline	1	1.25227995103871e-146	0
5	20690088	20696054	3	gain	AAB	99.9672	germline	1	0.0143286762055906	0.0366739124401367
5	45371430	45377396	1	loss	A	-1	germline	1	0.0201272988751057	0.0545987657620298
5	46320024	46403548	2	neutral	AA	2.06449	germline	1	0.734398715638084	0.51963190423952
5	46403548	46409514	1	loss	A	-1	germline	1	0.0207248808741203	0.056504709544413
5	50490258	50749779	2	neutral	AA	28.4654	somatic	0	0.498690080609895	0.577099282884397
5	55436072	55546443	2	neutral	AA	26.7652	somatic	0	0.0812123255512254	0.265977778269161
5	55650848	55656814	2	neutral	AA	54.5678	somatic	0	0.329099071040415	0.423531153178363
5	66076433	66097314	2	neutral	AA	100	somatic	0	0.240207038893222	0.373622523889519
5	67010112	67016078	2	neutral	AA	100	somatic	0	0.376533537458591	0.317125817214893
5	79443256	79452205	2	neutral	AA	100	somatic	0	0.55681027907186	0.593612958473782
5	82098126	82199548	2	neutral	AA	36.38	somatic	0	0.0104035218498468	0.028852348417915
5	83878977	83917756	2	neutral	AA	100	somatic	0	0.661446325118412	0.911983312785457
5	84651574	84660523	1	loss	A	-1	germline	1	0.0152831951078994	0.0395764444537706
5	85671760	85674743	1	loss	A	-1	somatic	0	0.124669938787972	0.335853040311383
5	108106903	108265002	2	neutral	AA	36.3787	germline	1	2.284403563524e-07	1.39116383698346e-05
5	108443982	108476795	2	neutral	AA	54.5678	somatic	0	0.087513452278158	0.214813045943323
5	111659656	111668605	2	neutral	AA	100	somatic	0	0.0899009931356502	0.402339994650451
5	114920075	114926041	1	loss	A	-1	germline	1	0.0225642699958255	0.0500618300088792
5	116152054	116161003	2	neutral	AA	36.3802	germline	1	0.803465664617486	0.994423892980098
5	125614130	125617113	1	loss	A	-1	germline	1	0.0833239032208407	0.270139921210346
5	137844430	137853379	1	loss	A	-1	germline	1	0.00669872391864095	0.00948081350087526
5	146113306	146286320	2	neutral	AA	35.7005	somatic	0	0.384819361042168	0.264405027345706
5	150823463	150844344	1	loss	A	-1	germline	1	1.48596239526668e-05	7.06492941493497e-06
5	155596263	155649957	2	neutral	AA	100	germline	1	0.0665352029876981	0.0675709158662454
5	163504196	163557890	2	neutral	AA	39.2807	somatic	0	0.246187875858422	0.400745394402572
5	166463332	166567737	2	neutral	AA	100	somatic	0	0.515223715360071	0.0454598408306957
5	170893087	170964679	2	neutral	AA	100	somatic	0	0.727683304341188	0.931033562684117
5	175480941	175501822	2	neutral	AA	100	somatic	0	0.194828441665364	0.376840682206745
5	178872612	178902442	2	neutral	AA	75.452	somatic	0	0.0547446437357089	0.158915776407135
5	181169522	181178471	2	neutral	AA	30.1892	somatic	0	0.167926967467978	0.329971889420466
5	181241114	181282876	3	gain	AAB	3.27682	germline	1	2.5232555394842e-09	1.54807278107683e-10
6	20958558	20961541	4	gain	-	-1	germline	1	0.0832909063000743	0.270082623183844
6	32487853	32666833	1	loss	A	-1	somatic	0	5.58873396709203e-14	1.11022302462516e-16
6	35787051	35798983	4	gain	-	-1	germline	1	0.000532638923628955	0.000671461294607489
6	51200212	51203195	1	loss	A	-1	germline	1	0.0835882599452257	0.270598624832374
6	60238702	60241685	4	gain	-	-1	germline	1	0.0832938389310077	0.270087715982508
6	61733185	61757049	1	loss	A	-1	germline	1	6.4130990285867e-06	1.25026142960838e-06
6	66297175	66338937	1	loss	A	-1	germline	1	1.09467641573168e-09	2.9550140112633e-11
6	96667098	96673064	2	neutral	AA	100	somatic	0	0.0168456937469239	0.0407421758331974
6	103289358	103316205	1	loss	A	-1	germline	1	2.56268448065965e-06	1.30479776794257e-06
6	108861602	108924245	2	neutral	AA	41.0677	somatic	0	0.652391824759689	0.377213938797846
6	109213596	109279222	2	neutral	AA	36.3861	germline	1	0.136557961131144	0.120550913850005
6	118645842	118648825	5	gain	AAAAA	9.26802	somatic	0	0.0832865075104995	0.270074984117279
6	121017327	121321593	2	neutral	AA	12.6046	somatic	0	0.315055249460656	0.343087129532468
6	121953989	121989785	2	neutral	AA	100	somatic	0	0.639947233107836	0.344520875951301
6	122478997	122484963	2	neutral	AA	54.5678	somatic	0	0.317277574225852	0.378526518041436
6	124110698	124149477	3	gain	AAB	22.6521	germline	1	4.25984384127428e-10	1.02856612116398e-11
6	128987903	129050546	2	neutral	AA	46.0746	somatic	0	0.360145987117964	0.641098559981378
6	157308505	157311488	9	gain	AAAAAABBB	3.39903	somatic	0	0.0832703802253826	0.270046975555877
6	157773853	157970731	2	neutral	AA	20.6683	germline	1	0.619323225193322	0.299995185489471
6	169324029	169335961	2	neutral	AA	54.5686	somatic	0	0.193719985435135	0.545433189132009
7	903849	906832	4	gain	AAAB	100	germline	1	0.0832909063000743	0.270082623183844
7	1088795	1103710	2	neutral	AA	21.8271	somatic	0	0.365064238993543	0.346043773991038
7	4480466	4519245	2	neutral	AA	38.2302	somatic	0	0.170852737403076	0.369788717091157
7	6085320	6100235	2	neutral	AA	21.8345	somatic	0	0.017528891236684	0.0126517889635075
7	10881984	10932695	2	neutral	AA	100	somatic	0	0.259858021123861	0.241514518774803
7	13715834	13736715	2	neutral	AA	100	somatic	0	0.448663591021545	0.396542091678327
7	32496802	32935303	2	neutral	AA	100	somatic	0	0.0335118574908573	0.0499485593577866
7	37329262	37365058	2	neutral	AA	54.5678	somatic	0	0.234044763711333	0.498131000720961
7	41937997	42066266	2	neutral	AA	62.9326	somatic	0	0.0401291213361369	0.0445425485373346
7	50728898	50785575	2	neutral	AA	100	somatic	0	0.554266542963442	0.192895816616819
7	51525359	51531325	1	loss	A	-1	somatic	0	0.0232275964161555	0.0562909941101152
7	54395005	54397988	1	loss	A	-1	germline	1	0.0832872406290267	0.270076257284091
7	57443631	57446614	1	loss	A	-1	germline	1	0.0833033705592018	0.270104268062274
7	57485393	57497325	3	gain	AAB	1.49484	germline	1	0.00056407642264134	0.000773293017359622
7	57905996	57914945	1	loss	A	-1	germline	1	0.00622523051751937	0.00936285252197222
7	61044112	61059027	3	gain	-	-1	somatic	0	0.000109100035269134	9.33066052437592e-05
7	62335751	62356632	3	gain	AAB	0.404924	germline	1	0.00114845692735585	0.00159091162065939
7	62401377	62407343	4	gain	-	-1	germline	1	0.014314091143878	0.0366439408611194
7	63009909	63015875	3	gain	AAB	1.9729	somatic	0	0.014323581520545	0.0366679861254651
7	65226278	65229261	1	loss	A	-1	germline	1	0.0832872406290267	0.270076257284091
7	65796031	65822878	3	gain	AAB	0.201781	germline	1	2.06258575625843e-07	3.17791160053815e-08
7	66073450	66115212	2	neutral	AA	100	somatic	0	0.120238517045594	0.171069396040351
7	66225583	66625305	2	neutral	AA	87.5304	somatic	0	0.261104872390177	0.340555457206548
7	66625305	66986248	2	neutral	AA	100	somatic	0	0.0005791550368659	5.11664389146738e-06
7	67019061	67022044	3	gain	AAA	100	somatic	0	0.0832960384590977	0.270091535627507
7	71216142	71738167	2	neutral	AA	26.5743	somatic	0	0.759317510233072	0.250233724318133
7	74058941	74157380	2	neutral	AA	12.1321	germline	1	0.00812288220052973	0.0167857190279526
7	83637354	83649286	2	neutral	AA	100	somatic	0	0.00218993664297836	0.00199987955105929
7	83813351	83887926	2	neutral	AA	21.8401	somatic	0	0.00539157321961252	0.0141355450597317
7	85367494	86447340	2	neutral	AA	46.2056	somatic	0	6.2600432082903e-08	6.39648401506987e-05
7	87822503	87926908	2	neutral	AA	55.0709	somatic	0	0.00311648078269961	0.00656023860560107
7	94065922	94283681	2	neutral	AA	18.1905	germline	1	0.000280028885236969	0.00384274839850107
7	98486728	98516558	2	neutral	AA	65.3291	somatic	0	0.154819667253078	0.266310202458323
7	100950686	100956652	3	gain	AAB	11.2789	germline	1	0.0143165210776824	0.0366481216549595
7	100956652	100959635	13	gain	AAAAAAAABBBBB	14.1458	germline	1	0.083267448263528	0.270041883317977
7	100959635	100968584	4	gain	AABB	0.485532	germline	1	0.00270233589344977	0.00496050996942832
7	100968584	100977533	3	gain	AAB	0.753248	germline	1	0.00270691524565958	0.00496886394368545
7	102832959	102868755	2	neutral	AA	65.1555	somatic	0	0.0419301696145612	0.184240714389891
7	109801247	109813179	1	loss	A	-1	germline	1	0.00107474098770205	0.00147926321878777
7	113327153	113392779	2	neutral	AA	100	somatic	0	0.459649506041081	0.728345559667179
7	117008175	117032039	2	neutral	AA	20.4139	somatic	0	0.687449983112526	0.587758550130541
7	129939480	129948429	2	neutral	AA	54.5678	somatic	0	0.772255481011038	0.981291553115724
7	131299728	131323592	2	neutral	AA	32.7328	somatic	0	0.314758473248066	0.509185667184381
7	132015648	132624180	2	neutral	AA	45.0064	somatic	0	0.000260196257207411	0.00255035235882206
7	138408217	138414183	2	neutral	AA	54.5678	somatic	0	0.573169608185081	0.900881237231841
7	143846226	143849209	4	gain	AABB	36.4496	germline	1	0.08329457210181	0.270088989193127
7	145218406	145224372	1	loss	A	-1	somatic	0	0.0220523661928321	0.055350310899571
7	152401470	152407436	12	gain	AAAAAAAAAABB	1.98468	germline	1	0.0143070348278641	0.0366327941175757
7	154480621	154498519	2	neutral	AA	100	somatic	0	0.760646554612919	0.299682409068239
7	156968443	156983358	2	neutral	AA	20.3912	somatic	0	0.800689603689016	0.966941694728485
7	158149711	158152694	4	gain	AAAB	79.9462	germline	1	0.0832909063000743	0.270082623183844
7	158594178	158597161	5	gain	AAABB	39.3378	germline	1	0.0832865075104995	0.270074984117279
7	159310098	159330979	3	gain	AAB	5.75298	somatic	0	2.26018935255484e-05	1.32118152073035e-05
8	25722409	25728375	3	gain	-	-1	germline	1	0.0143169839634698	0.0366491669186262
8	32821949	32833881	0	loss	-	-1	germline	1	0.0143068035252022	0.0366327941175768
8	42331753	42337719	1	loss	A	-1	germline	1	0.0143196458129535	0.0366599695039626
8	42519682	42522665	0	loss	-	-1	germline	1	0.0832689142340017	0.270044429428169
8	43235602	43238585	5	gain	-	-1	germline	1	0.0832865075104995	0.270074984117279
8	43238585	43241568	9	gain	-	-1	germline	1	0.0832711132289134	0.270048248626305
8	45971013	46000843	2	neutral	AA	7.49751	somatic	0	0.641550900971616	0.195013560552466
8	46493038	46496021	1	loss	A	-1	germline	1	0.08329530527784	0.27009026240813
8	50117383	50126332	1	loss	A	-1	germline	1	0.00480749841853196	0.00953047793124784
8	50636425	50660289	2	neutral	AA	100	somatic	0	0.0426561995691325	0.0331422563354161
8	56569612	56578561	2	neutral	AA	54.5678	germline	1	0.146630239007562	0.173834900440797
8	62195550	62225380	2	neutral	AA	100	somatic	0	0.315397631557275	0.719010866086069
8	62777235	63376818	2	neutral	AA	9.99821	germline	1	0.00113031973110496	0.0286680248163478
8	67985553	68003451	2	neutral	AA	45.3564	somatic	0	0.251121767143574	0.255313824799648
8	68301751	68397207	2	neutral	AA	28.202	somatic	0	0.287341355499307	0.38750109135484
8	72188600	72203515	2	neutral	AA	36.3793	somatic	0	0.714351286084209	0.853223314825815
8	72621135	72826962	2	neutral	AA	100	somatic	0	0.000604262935139283	0.00551496513888272
8	80341139	80353071	2	neutral	AA	100	somatic	0	0.668799497367593	0.863198863430933
8	82465035	82963196	2	neutral	AA	31.2236	germline	1	0.00011283703329312	0.00015046437297217
8	89027635	89045533	2	neutral	AA	100	somatic	0	0.118346436493527	0.327460264220664
8	101621861	101636776	2	neutral	AA	21.6385	somatic	0	0.316407452155472	0.661668719569811
8	104399034	104413949	2	neutral	AA	54.5681	somatic	0	0.308338065499051	0.233693672580473
8	106928618	106934584	2	neutral	AA	100	somatic	0	0.646004393018056	0.966599293519201
8	111280815	111286781	1	loss	A	-1	germline	1	0.020786107184533	0.0566738442802601
8	118040293	118049242	2	neutral	AA	100	somatic	0	0.0307471234094821	0.0998112090766413
8	120835364	120883092	2	neutral	AA	100	somatic	0	0.300892624720766	0.533299315750989
8	122702722	122765365	2	neutral	AA	27.4011	somatic	0	0.29176089458839	0.390828922816191
8	130837363	130840346	1	loss	A	-1	germline	1	0.0832975048372961	0.270094082079415
8	136012868	136039715	2	neutral	AA	100	somatic	0	0.856192750952138	0.971619303850636
8	136147103	136153069	1	loss	A	-1	germline	1	0.017918593476119	0.0476815176763131
8	137859345	137913039	2	neutral	AA	47.9073	somatic	0	0.874250511802288	0.914162666716375
8	141489656	141492639	4	gain	AABB	18.9965	germline	1	0.08329530527784	0.270090262408127
8	142184695	142390522	2	neutral	AA	13.6911	somatic	0	0.0161174177835739	0.0261190978928815
8	143619518	143631450	1	loss	A	-1	germline	1	0.000630448314549415	0.000853371458698238
8	144123645	144126628	5	gain	AAAAB	44.0059	germline	1	0.0832887068817633	0.270078803630847
9	3093371	3135133	2	neutral	AA	54.5681	somatic	0	0.218944997976624	0.274864583332751
9	4459585	4477483	2	neutral	AA	100	somatic	0	0.971869934888771	0.641863614859587
9	8006372	8015321	1	loss	A	-1	germline	1	0.00480242680731856	0.00908498532712854
9	25161605	25212316	2	neutral	AA	54.6166	somatic	0	0.693159311262358	0.830182452428786
9	33722815	34050945	2	neutral	AA	1.97917	somatic	0	0.000755933719324837	4.59279288150816e-05
9	34056911	34068843	2	neutral	AA	54.5678	somatic	0	0.0436605569468939	0.0399503552421745
9	40911845	40914828	5	gain	-	-1	germline	1	0.083281375827174	0.270066072072287
9	40923777	40929743	6	gain	AAAABB	1.42616	germline	1	0.0143102734115182	0.0366376704527819
9	74169312	74193176	2	neutral	AA	54.5789	somatic	0	0.316123407489437	0.87561283178503
9	80884045	81242005	2	neutral	AA	38.147	somatic	0	0.591933733339497	0.651807082024786
9	93988364	94507406	2	neutral	AA	100	somatic	0	0.104460723320971	0.139606465521193
9	98546388	98549371	0	loss	-	-1	germline	1	0.0832667152861311	0.270040610269458
9	126929633	126983327	2	neutral	AA	54.8373	germline	1	0.0115236738612307	0.0125639126591468
9	130046868	130049851	2	neutral	AA	100	germline	1	0.222523271147843	0.462078654226311
9	130049851	130729975	1	loss	A	-1	somatic	0	1.21459409895399e-135	0
9	134449776	134503470	2	neutral	AA	6.67989	germline	1	0.263823073481977	0.248501513755772
9	137325388	137328371	5	gain	AAABB	12.5291	germline	1	0.0832857743971996	0.270073710954851
10	5846680	5852646	1	loss	A	-1	germline	1	0.0200135160419084	0.0542412340072659
10	26566598	26650122	2	neutral	AA	1.86176	somatic	0	0.00917484773417794	0.031055553783279
10	26936490	26939473	4	gain	AAAB	3.30232	germline	1	0.08329457210181	0.270088989193127
10	38483683	38486666	2	neutral	AA	13.9118	somatic	0	0.1100459341037	0.313840823048978
10	38486666	38489649	4	gain	AAAB	11.748	germline	1	0.0832938389310077	0.270087715982508
10	38489649	38525445	2	neutral	AA	0.739324	somatic	0	3.42262529923381e-07	1.10477621855232e-05
10	38525445	38528428	10	gain	AAAAAAAABB	8.62472	germline	1	0.0832681812461514	0.270043156370881
10	38573173	38582122	4	gain	AAAB	8.7374	germline	1	0.00270223046190448	0.00496043922808509
10	38582122	38829711	2	neutral	AA	0.61973	somatic	0	7.01990381724298e-06	6.51065910584059e-06
10	38829711	38835677	2	neutral	AA	4.27051	somatic	0	0.717568576699431	0.82170951416577
10	39557563	39560546	1	loss	A	-1	somatic	0	0.0832872406290267	0.270076257284091
10	41827626	41842541	2	neutral	AA	26.7718	germline	1	0.0151429015734001	0.0303198653931218
10	41857456	41914133	37	gain	AAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBB	5.86898	germline	1	4.59339776169511e-06	1.66336184559412e-06
10	42298940	42322804	2	neutral	AA	3.51545	somatic	0	6.82411991323482e-06	4.94654197128463e-05
10	45150688	45165603	2	neutral	AA	54.6088	somatic	0	0.880460529883262	0.98353108861627
10	46513919	46561647	4	gain	AABB	0.380635	germline	1	9.16382560491342e-11	1.3873346915716e-12
10	57428716	57506274	2	neutral	AA	51.4431	somatic	0	0.862516279412426	0.707529877569928
10	65548442	65554408	1	loss	A	-1	germline	1	0.0204011993681324	0.0482584728549337
10	67726032	67729015	1	loss	A	-1	germline	1	0.0852925292386153	0.273541357729153
10	74112635	74240904	2	neutral	AA	66.0598	somatic	0	0.122180478385303	0.156616430458789
10	74240904	74595881	2	neutral	AA	11.8495	somatic	0	3.07776640449935e-06	6.43606702610544e-05
10	76499035	76502018	1	loss	A	-1	germline	1	0.0832923726050858	0.270085169574418
10	98892416	99348815	2	neutral	AA	100	somatic	0	0.00931868927277979	0.0652868175930554
10	128462895	128465878	6	gain	AAAAAA	27.2839	germline	1	0.0832806427504652	0.270064798940526
10	131621892	131624875	1	loss	A	-1	somatic	0	0.0834897812522153	0.270427818802136
10	132361676	132364659	4	gain	AAAA	22.8075	germline	1	0.08329457210181	0.270088989193127
11	4107591	4119523	2	neutral	AA	100	somatic	0	0.145685356492474	0.511861416247863
11	4948797	4954763	1	loss	A	-1	germline	1	0.0179247966211512	0.046384846080371
11	5819833	5825799	2	neutral	AA	100	germline	1	0.664095951655775	0.795916302022915
11	8173420	8203250	2	neutral	AA	16.3281	somatic	0	0.24409224891281	0.277656172823916
11	18220164	18252977	2	neutral	AA	26.4118	somatic	0	0.811166292604034	0.97421806813179
11	22825916	22855746	2	neutral	AA	100	somatic	0	0.462926514566767	0.652281805576497
11	33057606	33248518	2	neutral	AA	16.0799	somatic	0	0.329231612986061	0.21010494229265
11	34405922	34435752	2	neutral	AA	36.3786	somatic	0	0.0156791371167223	0.00973013006760548
11	42794118	42797101	0	loss	-	-1	germline	1	0.0832652493470176	0.270038064185554
11	46964352	47047876	2	neutral	AA	100	somatic	0	6.93915631173911e-06	0.000170750885051807
11	48578155	48581138	1	loss	A	-1	germline	1	0.0832975048372961	0.270094082079415
11	48754152	50048774	2	neutral	AA	0.766791	somatic	0	0.0632708598582767	0.0555417778741831
11	50236703	50299346	2	neutral	AA	12.6027	somatic	0	0.324253740289043	0.350095208816067
11	50299346	50418666	2	neutral	AA	100	somatic	0	0.081991939652073	0.107238802710005
11	50728898	50821371	2	neutral	AA	1.55745	somatic	0	0.0146798550150558	0.00785180356095327
11	55006520	55027401	2	neutral	AA	100	somatic	0	0.0242047265710406	0.0478692116245779
11	55203398	55206381	3	gain	AAA	42.777	somatic	0	0.0832960384590977	0.270091535627507
11	55224279	55257092	2	neutral	AA	6.23219	germline	1	0.233139599880662	0.306343281816593
11	55600137	55683661	1	loss	A	-1	germline	1	7.95966126365998e-17	0
11	57956707	58114806	2	neutral	AA	31.1015	somatic	0	0.730420564087833	0.329554270336078
11	63424546	63430512	3	gain	AAB	8.00611	germline	1	0.0143299501265816	0.0366878600156596
11	64221007	64316463	2	neutral	AA	13.4773	germline	1	0.00456335172909837	0.0194925649988249
11	65873589	65876572	1	loss	A	-1	somatic	0	0.083524311581825	0.270487719420801
11	66025722	66124161	2	neutral	AA	100	somatic	0	4.14954928519207e-06	1.50816102229001e-06
11	66440359	66828149	2	neutral	AA	94.3653	somatic	0	4.24981247600268e-13	2.47782905304916e-11
11	69870809	69930469	2	neutral	AA	100	somatic	0	0.776826072851411	0.855984997222466
11	72075246	72155787	2	neutral	AA	57.7845	germline	1	0.0045803412970537	0.0019185623004252
11	73250548	73253531	1	loss	A	-1	somatic	0	0.0834009372154382	0.270273651107572
11	78202328	78291818	2	neutral	AA	54.5679	somatic	0	0.355607939329162	0.26206188997037
11	80108465	80114431	2	neutral	AA	100	somatic	0	0.0691040637158569	0.136349599340422
11	81787894	81805792	1	loss	A	-1	germline	1	6.047786693507e-05	4.50658651237612e-05
11	84818622	84824588	2	neutral	AA	54.5678	somatic	0	0.588751486603382	0.803451506531379
11	93719894	93734809	2	neutral	AA	100	somatic	0	0.916923341573062	0.914883756433739
11	96595506	96604455	2	neutral	AA	100	somatic	0	0.277485093340328	0.652063823640463
11	112617199	112623165	2	neutral	AA	100	somatic	0	0.0854566121806799	0.26735137257972
11	117154342	117169257	2	neutral	AA	100	somatic	0	0.0696313129606359	0.139512369151862
11	118985904	119009768	2	neutral	AA	21.8271	somatic	0	0.0223151694408603	0.0176442291603333
11	135028478	135076206	3	gain	AAB	2.64625	somatic	0	4.40650546351896e-09	6.31958307906189e-09
12	757682	766631	1	loss	A	-1	germline	1	0.00514515989713262	0.00935237852456983
12	2255148	2258131	5	gain	-	-1	germline	1	0.0832879737527813	0.270077530455277
12	37615630	37624579	1	loss	A	-1	germline	1	0.00424607353025874	0.00774644393096402
12	37678273	37743899	2	neutral	AA	6.20345	somatic	0	0.00560241875748955	0.0567506800558646
12	41776915	41797796	2	neutral	AA	100	somatic	0	0.981401737657044	0.888707091229797
12	42081181	42090130	2	neutral	AA	5.25987	somatic	0	0.376531978968894	0.712656472192401
12	44312465	44375108	2	neutral	AA	29.5178	somatic	0	0.666311501817726	0.192695201072579
12	45508648	45517597	1	loss	A	-1	germline	1	0.00509849867032072	0.00948566715803367
12	47167196	47220890	2	neutral	AA	21.8913	somatic	0	0.195209963255602	0.244616307486705
12	48954013	48959979	2	neutral	AA	100	somatic	0	0.716798528076058	0.975934112887316
12	50344091	50382870	2	neutral	AA	8.5626	somatic	0	0.0959135851632427	0.380434887969712
12	50827337	50848218	2	neutral	AA	100	somatic	0	0.206623547564831	0.359716956918887
12	52712593	52766287	2	neutral	AA	54.7109	somatic	0	0.788309415150084	0.829119051016619
12	53106349	53115298	2	neutral	AA	100	somatic	0	0.0869285990282996	0.305733562613919
12	53371836	53380785	2	neutral	AA	100	somatic	0	0.0162441167709427	0.0233072007037242
12	56411513	56420462	2	neutral	AA	100	somatic	0	0.789544689210764	0.89952029843674
12	59540680	59552612	1	loss	A	-1	germline	1	0.000807947304744944	0.00158014277633634
12	60244668	60250634	2	neutral	AA	100	somatic	0	0.167061347370724	0.21848794570626
12	60298362	60310294	2	neutral	AA	54.5693	somatic	0	0.61528027143242	0.649204021249726
12	67642508	67779726	2	neutral	AA	72.6657	somatic	0	0.605793173364254	0.787576093179889
12	71550238	71606915	2	neutral	AA	91.1342	somatic	0	0.44485155576102	0.712855960577407
12	72269141	72275107	2	neutral	AA	54.5967	somatic	0	0.153102601720811	0.356044681129137
12	74240904	74339343	2	neutral	AA	50.5846	somatic	0	0.408586686254648	0.460013094171006
12	74443748	74548153	2	neutral	AA	54.5678	somatic	0	0.910827597317542	0.84626736186361
12	79857893	79860876	2	neutral	AA	100	somatic	0	0.800198024493961	0.897853291474495
12	81537322	81623829	2	neutral	AA	56.5616	somatic	0	0.028466244711141	0.132432096520215
12	82802114	82828961	2	neutral	AA	36.3786	somatic	0	0.561846903207494	0.709358550263763
12	86032703	86038669	1	loss	A	-1	germline	1	0.020117938435054	0.0515025046246739
12	93701996	93734809	2	neutral	AA	48.1443	somatic	0	0.30083344797327	0.122952833840777
12	95399323	95432136	2	neutral	AA	36.7096	somatic	0	0.984783504310815	0.962684749846769
12	99038583	99068413	2	neutral	AA	37.6699	somatic	0	0.642828698364786	0.734231226681771
12	100831366	100837332	2	neutral	AA	100	somatic	0	0.676011717721106	0.9660218485555
12	104214088	104255850	2	neutral	AA	36.3858	somatic	0	0.986565851292706	0.627037763387183
12	115606165	115689689	2	neutral	AA	85.0623	somatic	0	0.0142914865373075	0.0213943566391845
12	122359677	122404422	2	neutral	AA	28.8617	somatic	0	0.0114048697585263	0.0148799353950622
12	123299322	123338101	2	neutral	AA	27.2851	somatic	0	7.38932588117798e-05	7.55470006983394e-05
12	124408998	124450760	2	neutral	AA	7.88901	somatic	0	0.0116044968151335	0.0449201767123771
12	127905074	127973683	2	neutral	AA	36.5391	somatic	0	0.400245927116743	0.679782199266927
12	128635909	128647841	2	neutral	AA	15.6017	somatic	0	0.39643931514276	0.294547016446328
12	131013360	131049156	2	neutral	AA	13.0569	germline	1	0.0461654321732275	0.218404566932016
12	132209543	132284118	2	neutral	AA	8.42992	somatic	0	0.198263554806403	0.5835026259658
12	133214814	133226746	3	gain	AAB	71.786	somatic	0	0.000614088450871024	0.000950871403389897
12	133226746	133241661	3	gain	-	-1	somatic	0	0.000108907830621839	9.33908048151855e-05
13	20499176	20505142	2	neutral	AA	100	somatic	0	0.657358318197147	0.841359972137144
13	22017523	22020506	1	loss	A	-1	germline	1	0.122767359550981	0.33305051228856
13	22020506	22023489	0	loss	-	-1	germline	1	0.083267448263528	0.270041883317981
13	29651020	29659969	2	neutral	AA	33.213	somatic	0	0.486781798004421	0.918483206969378
13	32052335	32067250	2	neutral	AA	54.5678	somatic	0	0.911977779179956	0.845302878925746
13	33848101	33863016	2	neutral	AA	100	somatic	0	0.302397610622952	0.319702759469674
13	37496310	37499293	1	loss	A	-1	germline	1	0.0852839347953381	0.273527222462247
13	45225263	45237195	2	neutral	AA	36.3786	germline	1	0.0777992816311217	0.167939858897487
13	48605002	48616934	2	neutral	AA	100	somatic	0	0.578043031801101	0.871742604245627
13	49687831	50007012	2	neutral	AA	41.0941	somatic	0	0.245217960059832	0.396927718970974
13	50493241	50502190	1	loss	A	20.8521	germline	1	0.00740142712954802	0.0103783343608397
13	54189178	54260770	2	neutral	AA	70.7225	somatic	0	0.310355552783299	0.446420100013676
13	57178144	57213940	1	loss	A	-1	germline	1	1.48294251051449e-08	8.85885365065064e-10
13	62511748	62526663	2	neutral	AA	100	germline	1	0.0824826408142531	0.157890450729298
13	62678796	62687745	2	neutral	AA	54.5678	somatic	0	0.99303507229995	0.962389488238825
13	62687745	62690728	1	loss	A	-1	somatic	0	0.124159409964673	0.335102771761324
13	63027807	63030790	3	gain	AAB	4.42495	germline	1	0.0832960384590977	0.270091535627507
13	63030790	63039739	3	gain	AAB	1.32528	germline	1	0.00295680519865633	0.00584383836803004
13	63039739	63057637	3	gain	AAB	1.43567	germline	1	3.25553937801703e-05	3.51203844867198e-05
13	63057637	63063603	3	gain	AAB	1.01259	germline	1	0.0143167525189259	0.0366491669186262
13	63063603	63066586	5	gain	AAABB	0.590196	germline	1	0.0832865075104995	0.270074984117279
13	63066586	63069569	3	gain	AAB	0.966529	germline	1	0.0832960384590977	0.270091535627507
13	63522985	63588611	2	neutral	AA	54.5682	germline	1	0.058010569050857	0.00573754364433088
13	64283650	64364191	2	neutral	AA	27.284	germline	1	0.00526254605951506	0.0427284299500382
13	72233345	72239311	1	loss	A	-1	somatic	0	0.0228063648174178	0.0565864291422606
13	80382901	80415714	2	neutral	AA	45.0007	somatic	0	0.650155650376879	0.791750482190926
13	94471610	94519338	2	neutral	AA	40.9052	somatic	0	0.608365366698576	0.668290773665667
13	97230885	97281596	2	neutral	AA	100	somatic	0	0.979298572694327	0.845455344005017
13	98603065	98606048	1	loss	A	-1	germline	1	0.0832960384590977	0.270091535627511
13	100825400	100867162	2	neutral	AA	54.5722	somatic	0	0.198607963076447	0.521217066281485
13	103629420	103653284	2	neutral	AA	54.5678	somatic	0	0.375913407281015	0.623629046838119
13	108294832	108300798	1	loss	A	-1	germline	1	0.0257153854885433	0.057386091190302
13	109216579	109219562	1	loss	A	-1	germline	1	0.08329530527784	0.27009026240813
13	110373983	110403813	2	neutral	AA	7.70746	somatic	0	0.00268142711123157	0.00392973907235539
13	111421016	111426982	2	neutral	AA	100	somatic	0	0.46776485720776	0.781465053200933
13	114332424	114341373	3	gain	-	-1	somatic	0	0.00293972666440975	0.00576493145543777
14	16093285	16096268	5	gain	-	-1	germline	1	0.0832865075104995	0.270074984117279
14	20236672	20239655	1	loss	A	-1	somatic	0	0.0909815472207548	0.283190840875491
14	34346262	34352228	1	loss	A	-1	germline	1	0.0293178846111247	0.0563790293998117
14	35136757	35145706	1	loss	A	-1	germline	1	0.00326106166895153	0.00573367474283848
14	37299432	37302415	1	loss	A	-1	germline	1	0.0841604056308025	0.271589317732554
14	48405141	48458835	2	neutral	AA	27.4586	somatic	0	0.970873070232723	0.112217374239529
14	49663967	49717661	2	neutral	AA	100	germline	1	0.00298071436987676	0.0114411256089715
14	49884709	49920505	2	neutral	AA	55.0709	somatic	0	0.133694518559179	0.162829165809109
14	59519799	59564544	2	neutral	AA	54.5679	somatic	0	0.499398498796291	0.379826086090495
14	76141075	76158973	2	neutral	AA	46.8827	somatic	0	0.629386122232972	0.565997708491581
14	79646100	79649083	0	loss	-	-1	germline	1	0.083267448263528	0.270041883317981
14	89543694	89585456	2	neutral	AA	54.8594	somatic	0	0.95654874178903	0.849297003076674
14	92449136	92481949	2	neutral	AA	34.6695	somatic	0	0.746229604910686	0.992620775390659
14	95736402	95754300	2	neutral	AA	100	somatic	0	0.743522826720991	0.81426577610597
14	96279308	96288257	2	neutral	AA	54.5678	somatic	0	0.692221590898083	0.701747964823691
14	99927517	99930500	5	gain	AAABB	14.9923	germline	1	0.083281375827174	0.270066072072287
14	102093175	102111073	2	neutral	AA	54.568	somatic	0	0.281204291318392	0.220325934237804
14	105320781	105359560	2	neutral	AA	53.9255	somatic	0	0.554330322033206	0.712299628260354
14	106865975	106880890	3	gain	AAA	72.2681	somatic	0	0.000108106667905148	9.14549699070344e-05
15	0	17080658	5	gain	AAAAB	-1	somatic	0	NA	NA
15	17080658	17083641	16	gain	-	-1	germline	1	0.083265982313961	0.270039337225312
15	17083641	20341077	5	gain	AAAAB	-1	somatic	0	0.251524596555806	0.162303973703838
15	20341077	20344060	11	gain	AAAAAAABBBB	43.4967	germline	1	0.0832681812461514	0.270043156370881
15	20344060	20358975	5	gain	AAAAB	4.98919	germline	1	0.000107622542949058	9.08678691134979e-05
15	20358975	20388805	5	gain	AAAAB	-1	germline	1	NA	NA
15	20388805	20672190	5	gain	AAAAB	2.65737	germline	1	9.2419835758677e-09	5.5907634077812e-10
15	22226333	22229316	3	gain	AAB	17.7557	germline	1	0.0833547098995745	0.270193407372765
15	22229316	22271078	3	gain	AAB	2.33333	germline	1	0.000108634685795066	9.32446096000294e-05
15	25871559	25895423	2	neutral	AA	29.0233	somatic	0	0.654288332450909	0.83989217918499
15	27306382	27309365	1	loss	A	-1	germline	1	0.0833011708742782	0.270100448285844
15	37045877	37072724	2	neutral	AA	100	somatic	0	0.942721574575577	0.353047723751896
15	41630748	41797796	2	neutral	AA	59.6093	somatic	0	3.20888027936361e-07	1.01713885225507e-06
15	41797796	41812711	2	neutral	AA	100	somatic	0	0.906144924338767	0.956583281753233
15	46988216	47194043	2	neutral	AA	13.2224	germline	1	0.0665606880088136	0.191858598595439
15	48300736	48479716	2	neutral	AA	85.9729	somatic	0	0.126415844027829	0.212554912684731
15	49252313	49255296	1	loss	A	-1	germline	1	0.109514142511134	0.313004259658203
15	56882827	56888793	2	neutral	AA	100	somatic	0	0.18152454613072	0.204764914427429
15	57688237	57691220	1	loss	A	-1	germline	1	0.0943814915288722	0.288837445552234
15	62562459	62580357	2	neutral	AA	100	somatic	0	0.260205646922537	0.367991858445378
15	70953638	70965570	2	neutral	AA	100	somatic	0	0.613573870012789	0.782857981801347
15	90211886	90220835	2	neutral	AA	54.5678	somatic	0	0.940709321025479	0.992572087326777
15	93427560	93448441	2	neutral	AA	21.8307	somatic	0	0.4047930834696	0.449054534262495
15	98671674	98683606	2	neutral	AA	54.846	somatic	0	0.619834547041079	0.488859146507469
16	844189	847172	4	gain	AABB	10.1584	germline	1	0.0832916394499663	0.270083896376939
16	1023169	1026152	5	gain	AAABB	11.1019	germline	1	0.0832865075104995	0.270074984117279
16	12582294	12606158	2	neutral	AA	36.3818	somatic	0	0.256586794890442	0.271359684080774
16	13542820	13739698	2	neutral	AA	23.9077	somatic	0	0.213519627687419	0.323230209547779
16	13936576	14005185	2	neutral	AA	51.3634	germline	1	0.36051999831671	0.55623805679928
16	17516176	17554955	2	neutral	AA	100	somatic	0	0.745910490690616	0.673808018978419
16	19935389	19953287	1	loss	A	-1	germline	1	6.86341901291776e-05	3.93367897809638e-05
16	20278434	20299315	2	neutral	AA	54.5728	somatic	0	0.0372940032969763	0.0244593125614401
16	21558141	21582005	4	gain	AABB	5.15245	germline	1	9.65703834818372e-07	2.25464428460498e-07
16	22408296	22426194	2	neutral	AA	41.849	somatic	0	0.0463366343088658	0.187015483546309
16	22614123	22691681	4	gain	AAAB	2.04064	somatic	0	4.74510054612761e-18	0
16	22691681	22697647	4	gain	AABB	8.65362	germline	1	0.0143142068467613	0.0366435924804696
16	28887372	28902287	2	neutral	AA	54.5678	somatic	0	0.996720363754997	0.850690895072548
16	29761391	29853864	2	neutral	AA	14.0892	somatic	0	1.50424750214302e-05	3.59200543063043e-05
16	34062877	34065860	22	gain	AAAAAAAAAAAAAAABBBBBBB	88.5341	germline	1	0.0832652493470176	0.270038064185551
16	34068843	34083758	2	neutral	AA	23.7983	germline	1	0.139078829242168	0.417717208164794
16	34083758	34086741	11	gain	AAAAAAABBBB	22.1355	germline	1	0.0832681812461514	0.270043156370881
16	34086741	34095690	2	neutral	AA	100	somatic	0	0.653822553304864	0.621721076410578
16	34095690	34098673	11	gain	AAAAAAABBBB	4.14782	germline	1	0.0832681812461514	0.270043156370881
16	34098673	34161316	2	neutral	AA	3.78404	germline	1	0.0548250141066364	0.193584395775767
16	34161316	34164299	4	gain	AABB	1.02712	somatic	0	0.0832909063000743	0.270082623183844
16	34164299	34191146	2	neutral	AA	-1	somatic	0	NA	NA
16	34191146	34957777	2	neutral	AA	0.563183	germline	1	0.042126070636584	0.00890468840491199
16	35971997	36124130	2	neutral	AA	23.4809	somatic	0	0.00548050124259479	0.0341312605852261
16	36124130	36127113	4	gain	-	-1	germline	1	0.0832894400159729	0.270080076810798
16	58612967	58615950	0	loss	-	-1	somatic	0	0.0832667152861311	0.270040610269458
16	61094823	61431902	2	neutral	AA	100	somatic	0	0.0526345786666861	0.0829067433282659
16	77423765	77459561	2	neutral	AA	36.5114	somatic	0	0.696117584804466	0.963748894242164
16	78336563	78351478	1	loss	A	-1	germline	1	0.000303631746253535	0.000265929110803587
16	81149532	81155498	2	neutral	AA	54.5678	somatic	0	0.338574426866917	0.346114463182849
16	85788097	85823893	2	neutral	AA	34.8986	somatic	0	0.146911932764878	0.327823478129765
16	88976924	89078346	2	neutral	AA	100	somatic	0	1.36307919759276e-05	2.10604631645239e-06
17	1264792	1267775	2	neutral	AA	100	somatic	0	0.276412983464766	0.521225466422963
17	2690666	2711547	2	neutral	AA	36.3786	somatic	0	0.927800382864034	0.890703126296518
17	6192708	6652090	2	neutral	AA	100	somatic	0	2.59263733426873e-06	8.08055592771417e-07
17	11899187	11905153	2	neutral	AA	100	somatic	0	0.219320668236612	0.332129229913509
17	15887458	15890441	1	loss	A	-1	somatic	0	0.0841485768906636	0.271568864420897
17	21289671	21304586	4	gain	AABB	0.218484	germline	1	0.000107664842419611	9.08894695795803e-05
17	21674478	21859424	4	gain	-	-1	germline	1	2.04135068358391e-07	3.05898995023313e-08
17	21886271	21966812	0	loss	-	-1	germline	1	5.19898805050654e-19	0
17	21966812	21978744	18	gain	-	-1	germline	1	0.014306572225839	0.0366327941175757
17	21978744	22154741	6	gain	AAAABB	0.280865	germline	1	1.97668043669528e-09	7.56665841095128e-11
17	22157724	22160707	3	gain	AAB	2.42846	germline	1	0.083296771645583	0.270092808851269
17	22709579	22718528	2	neutral	AA	3.18763	somatic	0	0.141344476243247	0.175155352371452
17	26784357	26823136	3	gain	-	-1	somatic	0	2.68648692856677e-08	2.41748119300667e-08
17	26823136	26826119	5	gain	-	-1	germline	1	0.083284308186282	0.270071164643139
17	26826119	26864898	3	gain	-	-1	germline	1	3.56081834301944e-08	1.03008430485385e-06
17	26864898	26867881	7	gain	-	-1	germline	1	0.0832762443999815	0.270057160241963
17	26867881	26876830	3	gain	-	-1	germline	1	0.00332784626130609	0.00722749383814059
17	29740510	29746476	2	neutral	AA	54.5678	somatic	0	0.588676228564677	0.591178348122374
17	31112690	31130588	2	neutral	AA	54.5678	somatic	0	0.761378060149579	0.587692468817538
17	40157146	40207857	2	neutral	AA	100	somatic	0	0.000891440893128739	0.00162127889699648
17	41857456	42659883	2	neutral	AA	100	somatic	0	2.67508287621613e-31	0
17	44554088	44592867	2	neutral	AA	45.7314	somatic	0	0.000248106596931652	0.000323266794062582
17	46907675	47194043	2	neutral	AA	52.6056	somatic	0	2.78175108967429e-05	0.000186064422763921
17	47214924	47229839	2	neutral	AA	54.5678	somatic	0	0.718426097206682	0.639761685830556
17	48184399	48190365	2	neutral	AA	100	somatic	0	0.359252723947591	0.429372614070169
17	50230737	50242669	1	loss	A	-1	germline	1	0.00109727486633803	0.00157040355522631
17	51289702	51304617	2	neutral	AA	100	somatic	0	0.880508234607092	0.976842962606635
17	55006520	55018452	2	neutral	AA	15.5963	somatic	0	0.300411167241707	0.326347807102914
17	55585222	55612069	2	neutral	AA	54.5694	somatic	0	0.703900215042365	0.970519909754769
17	56313074	56319040	2	neutral	AA	100	somatic	0	0.828367658269137	0.984866329885007
17	58684559	59123060	2	neutral	AA	100	somatic	0	8.90029022280005e-09	2.21372484454641e-07
17	62643000	62657915	2	neutral	AA	100	somatic	0	0.529792040202843	0.788559875013684
17	63355937	63394716	2	neutral	AA	54.5678	somatic	0	0.00871031107567831	0.00384553649810071
17	64397004	64462630	2	neutral	AA	100	germline	1	0.00515426182528679	0.0164702169527419
17	67734981	67746913	2	neutral	AA	37.6898	somatic	0	0.818257176085808	0.701356773729769
17	68477748	68525476	2	neutral	AA	100	somatic	0	0.013479523361947	0.0717812899378812
17	71058043	71069975	2	neutral	AA	100	somatic	0	0.640688910976512	0.488618720064893
17	73080517	73083500	2	neutral	AA	100	somatic	0	0.213573656970172	0.451675126461624
17	76728726	76761539	2	neutral	AA	41.2246	somatic	0	0.000952002627376208	0.000561768364492621
17	79496950	79520814	2	neutral	AA	100	somatic	0	0.54204651164206	0.412239222603654
17	79640134	79658032	2	neutral	AA	100	germline	1	0.00839005422936564	0.00987390328116899
17	80898960	80964586	2	neutral	AA	3.96169	somatic	0	0.430663718671651	0.54858268256929
17	82584355	82587338	4	gain	AAAA	48.8079	germline	1	0.08329457210181	0.270088989193127
18	5306757	5309740	1	loss	A	-1	germline	1	0.0859131716954826	0.27460688266887
18	24409889	24412872	1	loss	A	-1	germline	1	0.106933952703712	0.3089875768773
18	29594343	29597326	1	loss	A	-1	germline	1	0.0896704589277229	0.28098992968446
18	40679171	40688120	1	loss	A	-1	germline	1	0.00580184465265246	0.00949883445345079
18	47119468	47208958	2	neutral	AA	55.0905	somatic	0	0.520099629743586	0.848701423094094
18	48664662	48667645	2	neutral	AA	100	somatic	0	0.932173267273499	0.946028819157681
18	50227754	50230737	2	neutral	AA	100	somatic	0	0.27528548550053	0.520052265945548
18	50791541	50857167	2	neutral	AA	13.1449	somatic	0	0.264488742775934	0.356121295575142
18	52283041	52312871	2	neutral	AA	54.5678	somatic	0	0.0960941343529088	0.319117794618954
18	54028096	54031079	2	neutral	AA	100	somatic	0	0.470251948897472	0.697185330725473
18	54132501	54230940	2	neutral	AA	50.0345	somatic	0	0.0347705479966011	0.0569943309890113
18	56599442	56614357	2	neutral	AA	27.7246	somatic	0	0.226112956447037	0.527650875618947
18	57279566	57282549	1	loss	A	-1	germline	1	0.0833055702911769	0.270108087878134
18	60498223	61297667	2	neutral	AA	20.2468	somatic	0	0.0750985130154198	0.108257318128539
18	62681779	62687745	2	neutral	AA	100	somatic	0	0.816681154131778	0.970674656905077
18	67663389	67669355	2	neutral	AA	100	somatic	0	0.232219813716902	0.520618068378825
18	68322632	68343513	2	neutral	AA	100	somatic	0	0.825666665653699	0.834508681326008
18	68910283	68931164	2	neutral	AA	100	somatic	0	0.469124841861745	0.633352012491597
18	69077331	69089263	1	loss	A	-1	germline	1	0.00148043776518098	0.00162367802506347
18	70861165	70882046	2	neutral	AA	54.579	somatic	0	0.457998648585284	0.443296572614655
18	71812742	71815725	2	neutral	AA	100	somatic	0	0.175285427056893	0.404906886040558
18	73026823	73029806	2	neutral	AA	100	somatic	0	0.203166144163221	0.439336719478365
18	74846453	74849436	2	neutral	AA	100	somatic	0	0.88705591383156	0.931573654210884
18	74965773	75013501	2	neutral	AA	40.1312	somatic	0	0.146310733282392	0.407102917908398
18	75806979	75809962	2	neutral	AA	100	somatic	0	0.569120804555625	0.769499455277102
18	76743641	76749607	2	neutral	AA	54.5686	somatic	0	0.646132947308089	0.858390311776597
18	76907706	76970349	2	neutral	AA	10.0182	germline	1	0.933451965250856	0.68539643850543
18	77098618	77101601	2	neutral	AA	54.5678	somatic	0	0.410807953876928	0.648359825659901
18	77909994	77981586	2	neutral	AA	10.9851	somatic	0	0.125372246588865	0.235412327790661
18	78473781	78485713	2	neutral	AA	7.82097	somatic	0	0.953861556475024	0.522396348594623
18	78903333	79174786	2	neutral	AA	21.8271	somatic	0	0.350471692937743	0.537773513977713
18	79201633	79207599	1	loss	A	-1	germline	1	0.0264098727712991	0.0565244956587165
18	80227785	80260598	3	gain	AAB	9.85444	somatic	0	2.06582822076185e-07	3.13688600650508e-08
19	5772105	5813867	2	neutral	AA	8.39612	somatic	0	0.00111420598569484	0.0033738534837946
19	7424687	7448551	2	neutral	AA	36.3791	germline	1	0.00550807681175104	0.00336428872320038
19	7448551	7451534	11	gain	AAAAAAABBBB	5.97986	germline	1	0.0832681812461514	0.270043156370881
19	8880391	8919170	2	neutral	AA	2.45871	somatic	0	0.478450760670886	0.263583713778106
19	12683716	12689682	2	neutral	AA	75.0449	somatic	0	0.956452284435404	0.998714062874676
19	14136437	14172233	2	neutral	AA	21.8539	somatic	0	0.0453189773331207	0.041246954357309
19	15723393	15732342	2	neutral	AA	36.3789	somatic	0	0.124028434903358	0.159450004075923
19	15780070	15914305	2	neutral	AA	65.7445	somatic	0	2.6968645009647e-09	5.91120485893271e-08
19	19386517	19416347	2	neutral	AA	39.9829	somatic	0	0.00257086611914537	0.00421358394333538
19	19416347	19613225	2	neutral	AA	100	somatic	0	0.0118858241122582	0.0412906782634407
19	21403025	21823628	2	neutral	AA	5.46427	germline	1	0.0801913676844241	0.0807319871636735
19	22957168	22960151	1	loss	A	-1	germline	1	0.083296771645583	0.270092808851273
19	24329348	24403923	4	gain	AABB	0.195691	germline	1	9.91711856586862e-17	0
19	27243739	27333229	2	neutral	AA	1.38785	somatic	0	0.346121267197934	0.598280217460513
19	27336212	27342178	3	gain	AAB	1.34376	germline	1	0.0143166367978916	0.0366488184945057
19	27345161	27380957	6	gain	AAAABB	0.143605	germline	1	4.32876424397864e-08	4.12936806970521e-09
19	27380957	27383940	4	gain	AAAB	5.83407	germline	1	0.08329457210181	0.270088989193127
19	27383940	27398855	6	gain	AAAABB	0.258863	germline	1	0.000107616849987202	9.08743487412211e-05
19	29886677	30068640	2	neutral	AA	31.7664	somatic	0	2.53911894335005e-07	1.02426603265648e-06
19	32404329	32472938	2	neutral	AA	36.3807	somatic	0	0.00930756231736416	0.0236096264554475
19	34391007	34393990	6	gain	AAAABB	4.32787	germline	1	0.083281375827174	0.270066072072287
19	35363465	35369431	1	loss	A	-1	germline	1	0.0175629139905678	0.042110081613571
19	45016453	45022419	2	neutral	AA	54.5678	germline	1	0.101531179080239	0.227998446814909
19	46889777	46943471	2	neutral	AA	47.6002	somatic	0	3.71248565150985e-05	4.36317472518599e-05
19	50296363	50552901	2	neutral	AA	12.9221	germline	1	1.22513126687311e-13	1.51101353651484e-13
19	52384463	52387446	1	loss	A	-1	germline	1	0.0833004376564262	0.270099175035796
20	59660	62643	7	gain	-	-1	germline	1	0.083277710495901	0.270059706457293
20	65626	68609	3	gain	-	-1	germline	1	0.083296771645583	0.270092808851269
20	1583973	1613803	1	loss	A	-1	germline	1	1.17175993829328e-05	7.40026824608275e-06
20	1816647	1819630	2	neutral	AA	100	somatic	0	0.991945574722046	0.962051669761326
20	1819630	1879290	2	neutral	AA	10.6457	somatic	0	0.00462636646309924	0.0317325360025875
20	3952475	3970373	2	neutral	AA	36.3787	somatic	0	0.0151812970412704	0.0457904465748604
20	5080049	5169539	2	neutral	AA	22.0671	somatic	0	0.00353478592230185	0.00893354191816043
20	14888153	14903068	3	gain	AAB	74.0946	germline	1	0.00827642406037878	0.0547153358002982
20	16782358	16812188	2	neutral	AA	100	somatic	0	0.102512739374793	0.0635399483789075
20	26283213	26381652	2	neutral	AA	8.34525	somatic	0	0.477489498816454	0.25771925845856
20	28779984	28818763	8	gain	-	-1	somatic	0	3.49854215024715e-07	4.17846151012924e-07
20	29257264	29269196	4	gain	-	-1	germline	1	0.00273792110412117	0.00508197154555179
20	29272179	29313941	3	gain	-	-1	germline	1	7.6294544298277e-10	2.39752440123198e-10
20	31163401	31166384	4	gain	-	-1	germline	1	0.0832931057654329	0.270086442776271
20	31166384	31169367	6	gain	-	-1	germline	1	0.083277710495901	0.270059706457293
20	31178316	31181299	3	gain	-	-1	germline	1	0.0832960384590977	0.270091535627507
20	31181299	31190248	5	gain	-	-1	germline	1	0.00270132390576052	0.00496058071169636
20	31226044	31243942	3	gain	AAB	1.27116	germline	1	2.34362982745873e-05	1.4418452203846e-05
20	31243942	31246925	2	neutral	AA	75.4838	somatic	0	0.0840643360616095	0.271423167064702
20	33367838	33546818	2	neutral	AA	23.2236	somatic	0	1.96076118186357e-05	0.000163048437477498
20	38462802	38465785	1	loss	A	-1	somatic	0	0.0841470983927648	0.271566307835863
20	43641290	43647256	1	loss	A	-1	somatic	0	0.0187296587071189	0.0498916218208426
20	50042808	50260567	2	neutral	AA	10.3644	germline	1	1.13995720122585e-10	1.18001275417612e-09
20	54031079	54040028	1	loss	A	-1	germline	1	0.00493848218585368	0.00896082014448785
20	55137772	55155670	2	neutral	AA	27.2888	somatic	0	0.198823548365838	0.247446533000798
20	61044112	61047095	3	gain	AAB	10.8844	somatic	0	0.0832960384590977	0.270091535627507
20	63693016	63695999	3	gain	AAA	7.45406	somatic	0	0.0833033705592018	0.27010426806227
21	10673174	10691072	4	gain	AAAA	1.69099	germline	1	2.21257745943991e-05	1.23028035643458e-05
21	10691072	10694055	53	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBB	100	germline	1	0.0832652493470176	0.270038064185551
21	10694055	10703004	5	gain	AAAAB	4.64649	germline	1	0.00270159795156068	0.00495987333062997
21	10703004	10732834	6	gain	AAAABB	4.65118	germline	1	4.3266954231419e-08	4.12819045614299e-09
21	10732834	10738800	5	gain	AAAAB	3.37344	germline	1	0.0143127027736261	0.0366415022574254
21	15953084	15956067	2	neutral	AA	100	somatic	0	0.910192569173704	0.939270627930703
21	18709376	18712359	2	neutral	AA	80.4706	somatic	0	0.575800190433669	0.77395801092191
21	19159809	19267197	2	neutral	AA	21.8352	somatic	0	0.774236264729494	0.876396516902278
21	19553565	19574446	2	neutral	AA	100	somatic	0	0.627548211503548	0.857705105602587
21	20585683	20588666	1	loss	A	-1	germline	1	0.086604778968161	0.275790452363943
21	21235977	21247909	2	neutral	AA	100	germline	1	0.556098579817708	0.8976280263169
21	24254773	24305484	2	neutral	AA	100	somatic	0	0.349032055686735	0.203418341304352
21	26032641	26035624	2	neutral	AA	100	germline	1	0.303409968094952	0.548924066222733
21	26912626	26945439	2	neutral	AA	100	somatic	0	0.195035978378272	0.0827918578805571
21	27082657	27085640	2	neutral	AA	100	somatic	0	0.374064293968005	0.616076993733164
21	31783865	31786848	3	gain	AAB	11.2829	somatic	0	0.0833099698962844	0.270115727628138
21	37159231	37162214	1	loss	A	-1	somatic	0	0.125207450270023	0.336641589528594
21	39298042	39301025	2	neutral	AA	100	somatic	0	0.643489465810982	0.816934363889696
21	39563529	39566512	2	neutral	AA	100	somatic	0	0.666570901063304	0.830463408898993
21	40342092	40368939	2	neutral	AA	100	somatic	0	0.509126838388989	0.728510290025586
21	41084859	41087842	2	neutral	AA	100	somatic	0	0.161443075778531	0.386947000779628
21	41153468	41174349	2	neutral	AA	100	somatic	0	0.0627383359442533	0.0359757001291876
21	41803762	41806745	3	gain	AAA	14.0342	somatic	0	0.0833070368053004	0.270110634443941
21	42257178	42269110	2	neutral	AA	34.8753	somatic	0	0.413086242704104	0.395082196845174
21	43262449	43265432	3	gain	AAA	100	germline	1	0.0833026373256661	0.270102994799079
21	44786762	44789745	2	neutral	AA	100	somatic	0	0.15328424555124	0.376065003820493
21	45434073	45443022	2	neutral	AA	41.8582	somatic	0	0.169715558169485	0.350344143796038
22	10726868	10729851	9	gain	-	-1	germline	1	0.0832711132289134	0.270048248626305
22	18730257	18733240	40	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABB	54.8656	germline	1	0.0832652493470176	0.270038064185551
22	23291264	23762578	1	loss	A	-1	somatic	0	1.87862811998912e-47	0
22	24013150	24016133	2	neutral	AA	100	somatic	0	0.126932765423634	0.339164022845538
22	32144808	32147791	1	loss	A	-1	germline	1	0.0968099071682717	0.29281941341321
22	33675087	33785458	2	neutral	AA	18.7306	somatic	0	0.843630696548991	0.66463242199279
22	42313855	42436158	2	neutral	AA	6.29756	somatic	0	0.0015567157399167	0.00113378440848377
22	44631646	44640595	2	neutral	AA	21.8271	somatic	0	0.877991853050351	0.696392604441973
22	50642391	50645374	4	gain	AAAB	13.0133	germline	1	0.08329530527784	0.270090262408127
X	5136726	5139709	0	loss	-	-1	somatic	0	0.083267448263528	0.270041883317981
X	5563295	5566278	0	loss	-	-1	germline	1	0.0832667152861311	0.270040610269458
X	63251532	63284345	2	gain	AB	93.6488	germline	1	0.17024368219934	0.209466326967752
X	70914859	70920825	0	loss	-	-1	somatic	0	0.0143122400099403	0.0366491669186272
X	77865249	77868232	0	loss	-	-1	germline	1	0.0832667152861311	0.270040610269458
X	78267954	78270937	2	gain	-	-1	germline	1	0.0850171087352455	0.273067473663339
X	93540914	93546880	0	loss	-	-1	germline	1	0.0143063409297745	0.036632097544619
X	119737620	119743586	0	loss	-	-1	germline	1	0.014326823407933	0.0366930915528206
X	140723025	140726008	2	gain	AB	100	germline	1	0.26544267011347	0.509637004665603
Y	10655276	10658259	8	gain	-	-1	germline	1	0.083274045295305	0.270053340951824
Y	10661242	10759681	3	gain	-	-1	germline	1	1.19149558090969e-05	7.03290175062543e-05
Y	10759681	10765647	5	gain	-	-1	germline	1	0.0143118929458375	0.0366425473559072
Y	10765647	10774596	3	gain	-	-1	germline	1	0.00630434072542435	0.0222115054363289
Y	10774596	10777579	5	gain	-	-1	germline	1	0.083284308186282	0.270071164643139
Y	10777579	10795477	2	gain	-	-1	germline	1	8.12382969801142e-05	0.000151924551961335
Y	10795477	10798460	7	gain	-	-1	germline	1	0.0832762443999815	0.270057160241963
Y	10798460	10810392	3	gain	-	-1	germline	1	0.00270296856166036	0.00496220803912073
Y	10810392	10899882	2	gain	-	-1	germline	1	0.440332758706563	0.0636250957402297
Y	10920763	10923746	2	gain	-	-1	germline	1	NA	NA
Y	10923746	10926729	5	gain	-	-1	germline	1	0.0832850412891271	0.270072437796805
Y	10926729	10932695	2	gain	-	-1	germline	1	0.896733944743143	0.719894001464432
Y	10932695	10935678	4	gain	-	-1	germline	1	0.0832901731554098	0.270081349995131
Y	10935678	10986389	2	gain	-	-1	germline	1	0.0162094347592975	0.0004332340926958
Y	10986389	10989372	15	gain	-	-1	germline	1	0.0832667152861311	0.270040610269454
Y	10989372	10998321	2	gain	-	-1	germline	1	0.199560021012015	0.359669407133434
Y	10998321	11001304	8	gain	-	-1	germline	1	0.083274045295305	0.270053340951824
Y	11004287	11010253	2	gain	-	-1	germline	1	0.875920301322699	0.830277545736321
Y	11013236	11016219	16	gain	-	-1	germline	1	0.0832667152861311	0.270040610269454
Y	11016219	11040083	2	gain	AA	51.2983	germline	1	0.670634277797489	0.494001174493281
Y	11290655	11305570	28	gain	AAAAAAAAAAAAAAAAAABBBBBBBBBB	5.45072	germline	1	0.00010751767541456	9.08052553368899e-05
Y	11305570	11335400	7	gain	AAAAABB	1.98267	somatic	0	0.000107558310297738	9.08419549916495e-05
Y	11687394	11690377	7	gain	AAAAAAA	18.4926	germline	1	0.0832762443999815	0.270057160241963
Y	11690377	11693360	4	gain	AAAA	13.6502	germline	1	0.0832931057654329	0.270086442776271
Y	11717224	11720207	3	gain	AAA	5.61593	germline	1	0.0833459070501018	0.270178124823452
Y	11720207	11726173	21	gain	AAAAAAAAAAAAAABBBBBBB	63.9145	germline	1	0.014306572225839	0.0366327941175757
Y	11726173	11747054	2	gain	AA	8.49737	germline	1	0.141803974064047	0.159673921107722
Y	11747054	11750037	11	gain	AAAAAAABBBB	13.0988	germline	1	0.0832681812461514	0.270043156370881
Y	21584988	21620784	2	gain	-	-1	germline	1	0.111141990870741	0.344188346089406
Y	26638190	26641173	6	gain	AAAABB	23.6621	germline	1	0.0832784435517014	0.27006097957153
Y	56826150	56838082	25	gain	AAAAAAAAAAAAAAAABBBBBBBBB	5.83337	germline	1	0.000532044176763241	0.000671001808159155
Y	56838082	56844048	7	gain	AAAAABB	4.31874	germline	1	0.0143095793748717	0.0366366254760014
