chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	5667698	5676776	3	gain	-	-1	germline	1	0.00270589088769064	0.00496670117645726
1	16612740	16618792	7	gain	-	-1	germline	1	0.0143098868447296	0.0366381536556261
1	16633922	16942574	4	gain	-	-1	germline	1	9.25410615260367e-09	5.59665758181893e-10
1	31431062	31434088	4	gain	-	-1	somatic	0	0.0833026280066863	0.270102966350828
1	55663270	55669322	1	loss	A	-1	somatic	0	0.0144002220193641	0.0369117427190493
1	103561824	103616292	3	gain	-	-1	germline	1	2.05380016970439e-07	3.11129655372611e-08
1	105474256	105480308	1	loss	A	-1	somatic	0	0.0143219183134507	0.0366559112967773
1	109644084	109650136	1	loss	A	-1	germline	1	0.0143157835090008	0.03665981898823
1	124943540	124976826	3	gain	-	-1	somatic	0	2.24643616713169e-07	4.93343618179765e-08
1	125079710	125082736	10	gain	-	-1	germline	1	0.0832667578227076	0.270040671883467
1	125152334	125164438	3	gain	-	-1	germline	1	0.00802762138551772	0.0222650031921424
1	152583024	152613284	1	loss	A	-1	germline	1	4.40554717143507e-08	4.3128540738735e-09
1	152788792	152797870	1	loss	A	-1	somatic	0	0.00271274239919616	0.00497515444129115
1	155884390	155905572	2	neutral	AA	27.2839	somatic	0	0.0983804661346021	0.0841940650387748
1	156183964	156223302	2	neutral	AA	6.39897	somatic	0	0.710194126569971	0.854064222904554
1	160871238	160928732	2	neutral	AA	100	somatic	0	0.64461342114125	0.86149873292866
1	166251466	166275674	2	neutral	AA	100	germline	1	0.504378330806547	0.26164480469025
1	169259310	169271414	1	loss	A	-1	somatic	0	0.000534042637991694	0.000673517943857282
1	178727664	178763976	2	neutral	AA	36.3791	somatic	0	0.896757652237947	0.797652415969256
1	179965298	179974376	2	neutral	AA	54.5678	somatic	0	0.170861905062255	0.141542736783039
1	180355652	180376834	2	neutral	AA	39.218	somatic	0	0.352236048139048	0.630511708931671
1	186943254	186955358	2	neutral	AA	100	somatic	0	0.247159650461991	0.198608175891686
1	187730014	187745144	2	neutral	AA	100	somatic	0	0.825650477122752	0.660750478403429
1	187745144	187754222	1	loss	A	-1	germline	1	0.0143282915263352	0.0366942935025759
1	187866184	187935782	2	neutral	AA	36.813	somatic	0	0.818246001710749	0.752877160427185
1	191609346	191642632	2	neutral	AA	36.3786	somatic	0	0.915238464426879	0.982877770365433
1	194481020	194484046	0	loss	-	-1	somatic	0	0.0832652635032806	0.270038076508263
1	196771702	196877612	2	neutral	AA	36.5431	somatic	0	0.245902624520557	0.321062258209144
1	197761204	197879218	2	neutral	AA	40.473	somatic	0	0.327197782876892	0.194293537397689
1	202723844	202766208	2	neutral	AA	92.9272	somatic	0	0.3592604809587	0.752978635234564
1	207166012	207495846	2	neutral	AA	16.7252	somatic	0	0.0466185380541765	0.182731624049193
1	209828892	209847048	2	neutral	AA	54.5678	germline	1	0.476170181618187	0.842365234900235
1	209904542	209913620	1	loss	A	-1	somatic	0	0.00272021519204088	0.00501980551405601
1	210310026	210325156	2	neutral	AA	54.5678	somatic	0	0.817409571766555	0.933913523242985
1	223684946	223887688	2	neutral	AA	76.4364	somatic	0	0.743361770152798	0.709356826417355
1	224011754	224014780	7	gain	AAAAAAA	1.19309	germline	1	0.0832749769678811	0.270054946772524
1	228066594	228072646	1	loss	A	-1	somatic	0	0.0143108301670109	0.0366399290809754
1	229676426	229685504	1	loss	A	-1	somatic	0	0.00270879761446329	0.00497500983031707
1	232660062	232663088	2	neutral	AA	100	somatic	0	0.669516599721093	0.832180937416214
1	234775236	234781288	5	gain	AAAAB	8.88091	germline	1	0.0143130707772791	0.0366445455391802
1	236094572	236097598	6	gain	AAAABB	39.1475	germline	1	0.0832861859522334	0.27007441341801
1	238049368	238097784	2	neutral	AA	25.1393	somatic	0	0.871069258069113	0.939317673418247
1	240182698	240234140	2	neutral	AA	13.6456	somatic	0	0.787855073641688	0.660145199419881
1	240234140	240243218	3	gain	AAA	67.7873	germline	1	0.00270528836800558	0.00496424714216426
1	240243218	240246244	3	gain	AAB	7.00822	germline	1	0.0833071126596569	0.270110753896718
2	3180326	3183352	5	gain	AAAAA	5.57831	germline	1	0.0832899225519326	0.270080902527451
2	3183352	3307418	2	neutral	AA	18.9971	somatic	0	0.894955497826369	0.527582988290868
2	4275738	4293894	2	neutral	AA	54.5679	somatic	0	0.025072923674002	0.0388775986608723
2	5870440	5885570	2	neutral	AA	100	somatic	0	0.671149741464442	0.86664670235205
2	8061264	8076394	2	neutral	AA	54.5678	somatic	0	0.851931538989775	0.999993375839856
2	18292170	18298222	1	loss	A	-1	somatic	0	0.0144249028309871	0.0369700384972426
2	32913802	32916828	9	gain	-	-1	germline	1	0.083268999342581	0.270044564980402
2	34472192	34505478	1	loss	A	-1	germline	1	4.35372278365897e-08	4.16325607321966e-09
2	35752190	35767320	1	loss	A	-1	somatic	0	0.000107990070734738	9.1140372328935e-05
2	52522282	52558594	1	loss	A	-1	germline	1	9.35936698904927e-09	5.68594504812836e-10
2	54337882	54340908	1	loss	A	-1	somatic	0	0.0832772186669848	0.270058840019673
2	56425822	56428848	0	loss	-	-1	somatic	0	0.0832652635032806	0.270038076508263
2	76545696	76548722	0	loss	-	-1	somatic	0	0.0832712409113344	0.270048458118298
2	78848482	78854534	1	loss	A	-1	somatic	0	0.0143643353666663	0.0367426766645237
2	89823784	89826810	6	gain	-	-1	germline	1	0.0832787131602109	0.270061435540547
2	89826810	89838914	27	gain	-	-1	germline	1	0.000532028323802638	0.000670951266305564
2	89838914	89844966	13	gain	-	-1	germline	1	0.0143115376947198	0.0366477418468136
2	89844966	89847992	4	gain	-	-1	germline	1	0.0833041228692803	0.270105562181249
2	146101332	146116462	1	loss	A	-1	germline	1	0.00896149736584947	0.00335247756232426
2	169465078	169468104	0	loss	-	-1	somatic	0	0.0832652635032806	0.270038076508263
2	176400670	176409748	1	loss	A	-1	somatic	0	0.00301863633917318	0.00603572318045087
2	179202746	179211824	1	loss	A	-1	somatic	0	0.00271211691958354	0.00497942219877601
2	183929358	183938436	1	loss	A	-1	somatic	0	0.00271420955794566	0.00497725173344088
2	193824378	193827404	0	loss	-	-1	germline	1	0.0832660106602786	0.270039374193585
2	194813880	194832036	1	loss	A	-1	germline	1	2.22326401544239e-05	1.23931798047261e-05
2	241571632	241592814	2	neutral	AA	4.19426	germline	1	0.301875355137881	0.233336316891703
3	184586	193664	1	loss	A	-1	somatic	0	0.00470563973185166	0.0132538682184147
3	3818812	3903540	2	neutral	AA	48.8699	somatic	0	0.949269583944824	0.843046997942767
3	5492190	5498242	1	loss	A	-1	germline	1	0.0143226263247084	0.0366790074876155
3	27618302	27633432	2	neutral	AA	31.2004	somatic	0	0.00386291329396598	0.0284383216222689
3	32060470	32066522	1	loss	A	-1	somatic	0	0.0143383285036614	0.036699271547219
3	37936962	37946040	1	loss	A	-1	germline	1	0.00272963686320923	0.00503170127779173
3	39008166	39216960	2	neutral	AA	19.8053	somatic	0	7.52871049487716e-05	0.00125373408779283
3	45514066	45538274	2	neutral	AA	36.3786	somatic	0	0.92185474008009	0.865629343932617
3	47190470	47214678	3	gain	AAB	10.3257	somatic	0	1.05019523804756e-06	3.20603029235755e-07
3	58093148	58117356	2	neutral	AA	36.3786	somatic	0	0.733537502823521	0.975138521226127
3	62668460	62695694	2	neutral	AA	54.5678	somatic	0	0.856202593801477	0.710261975920083
3	68690200	68699278	1	loss	A	-1	germline	1	0.00271213848565226	0.00497696240359258
3	74920734	75864846	2	neutral	AA	0.91076	germline	1	0.052934375267962	0.149827465245801
3	80010466	80016518	1	loss	A	-1	somatic	0	0.0148114031851277	0.0381522467239063
3	109420160	109426212	2	neutral	AA	100	germline	1	0.0466741312738671	0.078354989684037
3	109426212	109471602	2	neutral	AA	18.5035	somatic	0	0.696898688863771	0.979283303914603
3	111048148	111078408	2	neutral	AA	100	somatic	0	0.160089617891436	0.0700208933127884
3	111819778	111877272	2	neutral	AA	30.2046	somatic	0	0.0392044598066172	0.0228241228883207
3	113617222	113656560	2	neutral	AA	46.1656	somatic	0	0.728451868278882	0.28774470786334
3	116815704	117081992	2	neutral	AA	100	somatic	0	0.901746294705027	0.114847656456177
3	117602464	117614568	2	neutral	AA	100	somatic	0	0.156758794248963	0.158939570675535
3	123451722	123533424	2	neutral	AA	24.5656	somatic	0	0.398174786081724	0.458558050744145
3	126904388	126928596	2	neutral	AA	54.5685	somatic	0	0.0107699999268356	0.0465178629994029
3	128087554	128099658	2	neutral	AA	100	somatic	0	0.692939070491544	0.830763931474551
3	131988068	131994120	1	loss	A	-1	somatic	0	0.0144525943808334	0.0370535090940415
3	133413314	133419366	1	loss	A	-1	somatic	0	0.0143835124648927	0.0367932539277122
3	140793728	140802806	2	neutral	AA	100	somatic	0	0.179522718847819	0.159824329198178
3	141931504	142116090	2	neutral	AA	16.9995	somatic	0	6.07130975729414e-05	0.00102013768354725
3	146924404	149865676	2	neutral	AA	18.443	somatic	0	4.57517195415878e-10	5.24794950829133e-07
3	149865676	149871728	1	loss	A	-1	germline	1	0.0143110660061521	0.0366456109479538
3	149871728	151336312	2	neutral	AA	17.0018	somatic	0	0.000268437270380072	3.89082433631671e-05
3	158078240	158141786	2	neutral	AA	35.6853	somatic	0	0.0368761562128427	0.0337269107466167
3	166720496	166756808	2	neutral	AA	54.6186	somatic	0	0.141877041472566	0.305607405559884
3	170309332	170351696	2	neutral	AA	21.9413	somatic	0	0.33045077972834	0.381767600208667
3	176703270	176890882	2	neutral	AA	82.0381	somatic	0	0.675057051749879	0.822462604618223
3	179102888	179111966	2	neutral	AA	100	somatic	0	0.61557452265821	0.720874394056582
3	183033662	183048792	2	neutral	AA	100	somatic	0	0.44227724175685	0.889880517550539
3	189645472	189654550	1	loss	A	-1	somatic	0	0.00274686739415782	0.00510369406120514
3	193158658	193167736	1	loss	A	-1	germline	1	0.00270851758334972	0.00496785640085795
3	195325274	195521964	2	neutral	AA	48.5051	germline	1	7.84136567644257e-06	3.13348441435268e-05
3	197001678	197301252	2	neutral	AA	49.2851	somatic	0	0.136495986414432	0.118851965700576
3	197382954	197389006	3	gain	AAB	3.2045	somatic	0	0.0143275832680526	0.0366658588646456
4	10209724	10233932	1	loss	A	-1	germline	1	9.98439662397844e-07	2.49207557478925e-07
4	10391284	10400362	1	loss	A	-1	germline	1	0.00271002575550465	0.0049724074915346
4	13287166	13341634	2	neutral	AA	67.0346	somatic	0	0.891541425376952	0.797916549799542
4	25406296	25412348	2	neutral	AA	100	somatic	0	0.69189334374226	0.72369022656142
4	31815364	31818390	0	loss	-	-1	germline	1	0.0832652635032806	0.270038076508263
4	40294216	40297242	4	gain	AAAA	100	germline	1	0.0832944066508231	0.270088689609005
4	42760406	42766458	1	loss	A	-1	somatic	0	0.0143480171115205	0.0367483724688566
4	43450334	43453360	1	loss	A	-1	somatic	0	0.0832734825289686	0.270052351297172
4	44588110	44781774	2	neutral	AA	100	somatic	0	0.0779170401884754	0.23152690155089
4	47172314	47202574	2	neutral	AA	100	somatic	0	0.2133917680716	0.272429715183944
4	49145266	49151318	67	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBBBBBBBBB	100	somatic	0	0.0143061141040932	0.0366314077257416
4	49653634	49656660	12	gain	AAAAAAAAAAAB	17.1435	somatic	0	0.0832660106602786	0.270039374193593
4	55170032	55182136	2	neutral	AA	54.5678	somatic	0	0.560734507760456	0.873802873959876
4	57427428	57448610	2	neutral	AA	33.1829	somatic	0	0.784004513141925	0.874848992559452
4	63201036	63204062	0	loss	-	-1	germline	1	0.0832652635032806	0.270038076508263
4	68066844	68139468	2	neutral	AA	84.9734	somatic	0	0.50394055352558	0.702985582409202
4	68517718	68623628	1	loss	A	-1	germline	1	1.00427285957395e-16	0
4	70914310	70956674	2	neutral	AA	20.7852	somatic	0	0.000914248520152431	0.000612700411622868
4	75604610	75650000	2	neutral	AA	46.6831	somatic	0	0.00616822236058674	0.00174889659005784
4	80431080	80437132	2	neutral	AA	100	somatic	0	0.588420987159016	0.933474465391085
4	80975760	81027202	2	neutral	AA	55.2594	somatic	0	0.0172421329107043	0.0313164743528014
4	81057462	81069566	2	neutral	AA	100	somatic	0	0.191218578935518	0.201730223675679
4	82627956	82643086	2	neutral	AA	100	somatic	0	0.429472889612775	0.784298606372592
4	84564596	84885352	2	neutral	AA	48.5368	somatic	0	0.350794549371643	0.287028748232381
4	85272680	85324122	2	neutral	AA	100	somatic	0	0.0288377864357092	0.0232961895610674
4	95548976	95564106	2	neutral	AA	100	somatic	0	0.951849893324487	0.976794646410129
4	128235828	128287270	2	neutral	AA	54.5678	somatic	0	0.793668686317916	0.729758929392077
4	129476488	129503722	2	neutral	AA	54.5728	somatic	0	0.849288180161186	0.965226936126319
4	139885928	139898032	2	neutral	AA	80.8479	somatic	0	0.576647631800375	0.431486482228072
4	148361754	148413196	2	neutral	AA	68.3451	germline	1	0.871959428464245	0.75208552423396
4	150803736	150927802	2	neutral	AA	18.1918	somatic	0	0.881911065567721	0.725677106919636
4	150927802	150964114	2	neutral	AA	63.8101	germline	1	0.0155899641276175	0.0854488297119179
4	151181986	151194090	2	neutral	AA	54.5678	germline	1	0.185792305865368	0.230100486716773
4	154713328	154752666	2	neutral	AA	54.5678	somatic	0	0.288791708687207	0.734023321853682
4	158507932	158538192	2	neutral	AA	77.7719	somatic	0	0.0326850096856439	0.118025081557381
4	160447598	160453650	2	neutral	AA	54.5678	somatic	0	0.831995087691237	0.987285362865134
4	164738466	164750570	2	neutral	AA	36.5168	somatic	0	0.251478698002411	0.241032603835375
4	169313778	169474156	2	neutral	AA	11.9505	germline	1	0.454474969022179	0.7574444731604
4	172503182	172512260	1	loss	A	-1	somatic	0	0.00270894841140467	0.00496865076050057
4	176052680	176116226	2	neutral	AA	54.5679	somatic	0	0.482028909517939	0.838967210172079
4	179928986	179941090	2	neutral	AA	100	somatic	0	0.00761276231462748	0.011660464553444
5	12809058	12821162	1	loss	A	-1	somatic	0	0.0005644208304758	0.000763876008649356
5	45371844	45377896	1	loss	A	-1	germline	1	0.0143717904456739	0.0368267681447385
5	49599166	49602192	203	gain	-	-1	germline	1	0.0832652635032806	0.270038076508272
5	58026576	58038680	0	loss	-	-1	germline	1	0.0143077645701436	0.0366346030307316
5	91203640	91206666	0	loss	-	-1	germline	1	0.0832675049905676	0.270041969577885
5	92341416	92347468	1	loss	A	-1	germline	1	0.0143577114935009	0.0367843450649999
5	140494154	140506258	2	neutral	AA	35.0999	somatic	0	0.22268178623803	0.46182400719743
5	140845170	140860300	1	loss	A	-1	germline	1	0.000537310903142902	0.000678494917883299
5	142700108	142809044	2	neutral	AA	80.1235	somatic	0	0.143205951364144	0.22226895424444
5	145611120	145647432	2	neutral	AA	54.5707	somatic	0	0.858994159107352	0.803336376324035
5	145989370	145992396	2	neutral	AA	100	somatic	0	0.147525887877138	0.36825656087617
5	146355516	146364594	2	neutral	AA	54.5791	somatic	0	0.93267736983291	0.982466188045815
5	153539240	153581604	2	neutral	AA	100	somatic	0	0.424739085565388	0.505567221967047
5	155914650	155917676	2	neutral	AA	100	somatic	0	0.191034681778882	0.424628883090056
5	156819424	156822450	2	neutral	AA	100	somatic	0	0.132099674699984	0.346637751724371
5	160238804	160256960	2	neutral	AA	100	somatic	0	0.378579552396549	0.357651399073387
5	162753410	162756436	2	neutral	AA	100	somatic	0	0.343008370462317	0.587423819060863
5	164230098	164245228	2	neutral	AA	18.648	somatic	0	0.129318756040012	0.457175803796916
5	164278514	164281540	2	neutral	AA	100	somatic	0	0.0849438310797814	0.272941926683942
5	166260544	166263570	2	neutral	AA	100	somatic	0	0.104327844099231	0.304889469881385
5	166841536	166850614	2	neutral	AA	36.3786	somatic	0	0.789598705896764	0.58462995607023
5	167119928	167189526	2	neutral	AA	54.5678	somatic	0	0.6579698924375	0.922667382234518
5	167243994	167247020	2	neutral	AA	100	somatic	0	0.516421131399631	0.73231153841581
5	167461866	167528438	2	neutral	AA	54.5678	somatic	0	0.787646992288324	0.972759041375653
5	170409190	170421294	2	neutral	AA	100	somatic	0	0.127241233767613	0.107037289873628
5	170996234	171002286	2	neutral	AA	36.38	somatic	0	0.153959218658395	0.428815221068629
5	171643798	171658928	2	neutral	AA	100	somatic	0	0.331832324209816	0.420204136429182
5	172028100	172037178	2	neutral	AA	54.5678	somatic	0	0.0707347497576934	0.0697650193648414
5	172391220	172412402	2	neutral	AA	54.5678	somatic	0	0.661352146163235	0.523251082093407
5	173062992	173087200	2	neutral	AA	54.5683	somatic	0	0.00633321582030377	0.0134472245212224
5	173156798	173159824	2	neutral	AA	100	somatic	0	0.906650513972126	0.938108046818721
5	174642564	174648616	2	neutral	AA	54.5678	somatic	0	0.701469024204268	0.783015923314204
5	176149512	176179772	2	neutral	AA	54.5873	somatic	0	0.629324868416484	0.522518833104593
5	176872726	177017974	2	neutral	AA	21.8946	somatic	0	0.18819681274779	0.510909163920139
5	177556602	177559628	2	neutral	AA	100	somatic	0	0.0990002619362942	0.296388057982942
5	178452298	178491636	2	neutral	AA	61.8081	germline	1	0.0496252775096409	0.0315574161018338
5	178585442	178588468	3	gain	AAB	100	somatic	0	0.0833048703087259	0.270106860103288
5	179006056	179139200	2	neutral	AA	100	somatic	0	0.483001516078401	0.347299353596258
5	180037922	180040948	2	neutral	AA	100	somatic	0	0.856647710041068	0.920676436029088
5	180951774	181003216	1	loss	A	-1	germline	1	9.40179942728359e-13	3.5527136788005e-15
6	257210	296548	3	gain	-	-1	germline	1	1.98820254084937e-09	7.60888019257777e-11
6	296548	381276	5	gain	-	-1	germline	1	1.03797840308779e-18	0
6	381276	384302	3	gain	-	-1	germline	1	0.0833071126596569	0.270110753896718
6	19039592	19048670	1	loss	A	-1	somatic	0	0.0027696882107596	0.00517925461101543
6	32490162	32529500	0	loss	-	-1	germline	1	4.32286052553843e-08	4.12590450693529e-09
6	32553708	32665670	1	loss	A	-1	germline	1	2.68586571086642e-09	5.70603897465105e-10
6	35658384	35661410	0	loss	-	-1	somatic	0	0.0832652635032806	0.270038076508263
6	54062516	54071594	1	loss	A	-1	germline	1	0.0143130707772791	0.0366431250363003
6	60238582	60241608	4	gain	-	-1	somatic	0	0.0832944066508231	0.270088689609005
6	76730282	76742386	1	loss	A	-1	somatic	0	0.0143327778793466	0.0367006939542056
6	78258412	78328010	1	loss	A	-1	germline	1	1.00961537831432e-16	0
6	96931858	97001456	2	neutral	AA	100	somatic	0	0.00974507799144453	0.0127977450188254
6	103289484	103313692	1	loss	A	-1	germline	1	4.62631912650079e-06	1.67889726643278e-06
6	110669898	110700158	2	neutral	AA	54.5678	somatic	0	0.449402199080381	0.288002257810939
6	121639148	121651252	1	loss	A	-1	somatic	0	0.000540195647195353	0.000686662740006505
6	123730114	123775504	2	neutral	AA	54.5678	somatic	0	0.366583456863506	0.56827661365977
6	142340014	142376326	2	neutral	AA	94.5225	somatic	0	0.38879184972315	0.758458354019529
6	143998262	144394668	2	neutral	AA	24.5432	somatic	0	4.31088047709726e-06	9.70354428126985e-05
6	152068604	152071630	0	loss	-	-1	somatic	0	0.0832660106602786	0.270039374193585
6	153427278	153487798	2	neutral	AA	1.05871	somatic	0	0.00382389680607577	0.0231602030131335
6	155067370	155073422	2	neutral	AA	100	somatic	0	0.236234520590405	0.628617872723833
6	156722592	156746800	2	neutral	AA	100	somatic	0	0.0365022115513517	0.145741725667258
6	157312662	157315688	8	gain	AAAAABBB	2.22032	germline	1	0.0832727353176593	0.270051053566337
7	9761876	9764902	0	loss	-	-1	somatic	0	0.0832660106602786	0.270039374193585
7	20277226	20280252	0	loss	-	-1	somatic	0	0.0832697465267343	0.270045862688476
7	26096224	26105302	1	loss	A	-1	somatic	0	0.00273513029684694	0.00505652432727433
7	45441442	45447494	1	loss	A	-1	somatic	0	0.0143375016947837	0.0367099407753408
7	57484922	57497026	3	gain	AAB	1.51732	somatic	0	0.000533430734137599	0.00067267005478977
7	58062888	58065914	4	gain	AAAA	12.9648	somatic	0	0.0832996383466857	0.270097774744614
7	61046524	61058628	3	gain	-	-1	somatic	0	0.000533842760773592	0.000673687641856935
7	62296262	62356782	3	gain	AAB	0.481537	germline	1	1.95843309736601e-09	6.33795749216404e-09
7	62402172	62405198	4	gain	-	-1	germline	1	0.0832951540196501	0.270089987471864
7	62438484	62456640	3	gain	AAB	4.41165	germline	1	0.000881015903392992	0.000634274540855517
7	62517160	62574654	2	neutral	AA	3.72995	germline	1	0.00592478997745564	0.0201238648304315
7	62686616	62701746	1	loss	A	-1	germline	1	0.000534548888891098	0.000673570154357761
7	65225430	65231482	1	loss	A	-1	germline	1	0.0146408919703789	0.0376380691920148
7	67733984	67743062	1	loss	A	-1	somatic	0	0.00271688683169207	0.00499928596627419
7	96538478	96928832	2	neutral	AA	100	somatic	0	0.303898635053819	0.315951248268689
7	100729488	100738566	1	loss	A	-1	somatic	0	0.00270696712068716	0.00497356393246806
7	100950386	100956438	3	gain	AAB	7.89711	germline	1	0.0143187326448284	0.0366505832139301
7	100956438	100959464	14	gain	AAAAAAAAAAAAAB	24.8943	germline	1	0.0832660106602786	0.270039374193593
7	100959464	100974594	3	gain	AAB	1.20348	germline	1	0.000107821356719413	9.10829844327221e-05
7	109801436	109813540	1	loss	A	-1	germline	1	0.000534223836950692	0.000673739864689438
7	115432822	115466108	2	neutral	AA	100	somatic	0	0.682995525170413	0.920064528479203
7	134100216	134112320	1	loss	A	-1	germline	1	0.000533083447103342	0.000672657018161771
7	143846962	143849988	4	gain	-	-1	somatic	0	0.0832944066508231	0.270088689609005
7	145626250	146034760	2	neutral	AA	43.1415	somatic	0	0.108360864801041	0.0665036706732841
7	152401464	152407516	7	gain	AAAAABB	0.788631	germline	1	0.0143091793890152	0.0366360232445618
7	154598340	154607418	1	loss	A	-1	somatic	0	0.00273991540371382	0.00508204935244083
7	158592660	158595686	5	gain	AAABB	10.4207	germline	1	0.0832899225519326	0.270080902527451
7	158707648	158722778	1	loss	A	-1	somatic	0	0.000226091014904197	0.000778915613277031
8	4526896	4563208	2	neutral	AA	27.2839	germline	1	0.500304419087491	0.67502999088205
8	9540978	9550056	2	neutral	AA	54.5678	somatic	0	0.181191895223859	0.27173209250785
8	10993458	11096342	2	neutral	AA	44.2246	germline	1	0.764387734071814	0.457686981198685
8	17593164	17686970	2	neutral	AA	80.2571	somatic	0	0.611334834855354	0.872565567316837
8	27893668	27905772	2	neutral	AA	100	somatic	0	0.338795059467783	0.70018470350772
8	28489790	28492816	2	neutral	AA	100	somatic	0	0.381720600316537	0.622963895944496
8	30099622	30253948	2	neutral	AA	100	somatic	0	0.00186629469333888	0.00114823164103639
8	33494794	33509924	2	neutral	AA	54.5678	somatic	0	0.0333500713466613	0.0610083232249307
8	34611388	34632570	2	neutral	AA	54.5678	somatic	0	0.223074495294472	0.250134802159013
8	37386230	37401360	2	neutral	AA	100	somatic	0	0.104016475038278	0.249821329131441
8	40115682	40158046	2	neutral	AA	36.3786	somatic	0	0.422080906685979	0.499617995369005
8	40357762	40490906	2	neutral	AA	15.7431	germline	1	0.6540386547746	0.862325349113473
8	43235488	43238514	4	gain	AAAA	2.61609	germline	1	0.0832959013939092	0.270091285339275
8	43238514	43241540	8	gain	AAAAABBB	1.10024	germline	1	0.0832719881117813	0.270049755840045
8	43241540	43247592	2	neutral	AA	7.73897	somatic	0	0.880393007036228	0.699650768575332
8	43774116	43780168	3	gain	AAB	100	germline	1	0.0143260488143814	0.0366747426174205
8	48225362	48234440	2	neutral	AA	100	somatic	0	0.545843751305872	0.971922757418179
8	49338930	49344982	2	neutral	AA	54.5678	somatic	0	0.137843574026059	0.359165963700268
8	53623746	53654006	2	neutral	AA	54.5678	somatic	0	0.89045173191056	0.959359832614579
8	54011074	54035282	2	neutral	AA	54.5678	somatic	0	0.00719851231403424	0.00526924633998149
8	67419280	67458618	2	neutral	AA	36.3849	somatic	0	0.214664014070967	0.305946414233448
8	68805188	68820318	2	neutral	AA	100	somatic	0	0.909498940812414	0.916661072380586
8	79541436	79562618	2	neutral	AA	54.5678	somatic	0	0.210495981723378	0.27769118521648
8	81142190	81229944	2	neutral	AA	80.4598	somatic	0	0.553943756508059	0.831676422388019
8	83917032	83965448	2	neutral	AA	100	somatic	0	0.976052910347287	0.811655922313817
8	87327334	87357594	2	neutral	AA	36.4075	somatic	0	0.558217569095492	0.362304269194276
8	93464062	93515504	2	neutral	AA	54.5678	somatic	0	0.863179354410207	0.724932670989891
8	94710774	94955880	2	neutral	AA	68.8334	somatic	0	2.07488888819009e-06	2.83973776999957e-05
8	97446278	97449304	2	neutral	AA	100	somatic	0	0.36109787707313	0.604274467867029
8	98647600	98708120	2	neutral	AA	54.5678	somatic	0	0.716230222816187	0.209293147864371
8	100780930	100793034	2	neutral	AA	54.5705	germline	1	0.325216418576016	0.772879973998033
8	102033694	102057902	2	neutral	AA	54.5873	somatic	0	0.757326062417669	0.621232996796748
8	109801436	109964840	2	neutral	AA	65.0806	somatic	0	0.183035247143569	0.232509172234298
8	111486918	111538360	2	neutral	AA	36.3812	somatic	0	0.932706483272344	0.973016722458788
8	112718500	112760864	2	neutral	AA	29.0806	somatic	0	0.868991771082478	0.975728053781763
8	114621854	114630932	1	loss	A	-1	somatic	0	0.0027060630586922	0.00496684556603932
8	117977688	117995844	2	neutral	AA	36.3787	somatic	0	0.402187403254479	0.776252696263821
8	118032156	118044260	2	neutral	AA	54.5704	somatic	0	0.32014211000074	0.467289222570196
8	118861280	118888514	2	neutral	AA	100	somatic	0	0.50690113384805	0.260127176931371
8	121557446	121575602	2	neutral	AA	36.3786	somatic	0	0.10274433737063	0.261741196934111
8	137931132	138073354	2	neutral	AA	100	somatic	0	0.731703569624193	0.936714317322829
8	138926686	138953920	2	neutral	AA	41.4041	somatic	0	0.520911169854081	0.73114264846427
8	140609142	140621246	2	neutral	AA	54.5678	somatic	0	0.974487236145821	0.988286764974017
8	141250654	141296044	2	neutral	AA	19.1627	somatic	0	0.0309431144282439	0.0643319408412183
8	143620012	143632116	1	loss	A	-1	germline	1	0.00270722547479983	0.00497132355201291
8	144125354	144128380	6	gain	AAAABB	16.4474	germline	1	0.0832794604149712	0.270062733307808
8	145030128	145069466	3	gain	AAB	100	somatic	0	1.2095872783206e-08	3.09193080028081e-08
9	22495284	22501336	1	loss	A	-1	somatic	0	0.014845471069282	0.0382004648102066
9	23360720	23378876	1	loss	A	-1	germline	1	2.29280938113155e-05	1.32621980708514e-05
9	29091964	29098016	1	loss	A	-1	somatic	0	0.0143286456670576	0.0366672801385548
9	33794368	33803446	3	gain	-	-1	somatic	0	0.00279862417050534	0.00527403992350706
9	40926650	40929676	6	gain	-	-1	germline	1	0.0832854386485889	0.270073115609779
9	69122918	69128970	1	loss	A	-1	somatic	0	0.0143428176286095	0.0367028276551217
9	72348634	72381920	2	neutral	AA	31.7722	somatic	0	0.00387352084393132	0.0223746960530713
9	73897946	74049246	2	neutral	AA	30.9757	somatic	0	0.636197388719875	0.280096588770026
9	77680446	78034488	2	neutral	AA	30.2337	somatic	0	0.0703702398286854	0.0573362607299513
9	86092726	86126012	2	neutral	AA	27.2848	somatic	0	0.46094160803847	0.320977856299243
9	90144540	90202034	2	neutral	AA	100	somatic	0	0.782392687608397	0.419070268578585
9	97842684	97848736	2	neutral	AA	54.5678	somatic	0	0.0613578230270312	0.176449305852517
9	107423000	107537988	2	neutral	AA	14.6256	somatic	0	3.37016957243133e-07	3.54633699961582e-07
9	113795756	113953108	2	neutral	AA	100	germline	1	0.332804605149811	0.497583182254653
9	118967190	119018632	2	neutral	AA	83.6996	somatic	0	0.647590488564539	0.344895168934654
9	128036112	128039138	2	neutral	AA	100	somatic	0	0.0990724178356938	0.296493524156741
9	128647364	128653416	1	loss	A	-1	somatic	0	0.0143557012080117	0.036766176836355
9	129406890	129425046	2	neutral	AA	4.5545	somatic	0	0.594252608984877	0.775332811446488
9	129425046	129440176	3	gain	AAB	1.20029	somatic	0	0.000172084643851977	0.00033483238463905
9	129440176	129446228	2	neutral	AA	1.24111	somatic	0	0.759599980868044	0.985679085637641
9	133755252	133785512	2	neutral	AA	19.0187	somatic	0	0.732435906507793	0.971863548421536
9	135195628	135262200	2	neutral	AA	22.8511	somatic	0	0.0168538431260765	0.0512929270578062
9	136832694	136920448	2	neutral	AA	9.23133	somatic	0	0.0927044197537135	0.242225479515341
9	137325932	137328958	6	gain	AAAABB	3.11405	germline	1	0.0832794604149712	0.270062733307808
9	137328958	137335010	2	neutral	AA	4.03212	somatic	0	0.675437100350147	0.723194246883554
9	137822196	137834300	2	neutral	AA	100	somatic	0	0.889990748978461	0.771267454147742
10	38524006	38527032	4	gain	-	-1	germline	1	0.0832973961587234	0.270093881087754
10	38527032	38530058	20	gain	-	-1	germline	1	0.0832652635032806	0.270038076508272
10	38578474	38581500	4	gain	-	-1	somatic	0	0.0832921645769342	0.270084796047743
10	39256298	39268402	1	loss	A	-1	somatic	0	0.002713432736554	0.00499558320355609
10	39341026	39353130	1	loss	A	-1	germline	1	0.000532663656902247	0.000671836187947639
10	39546794	39549820	5	gain	-	-1	somatic	0	0.0832891752211292	0.270079604696458
10	41858658	41913126	25	gain	AAAAAAAAAAAAAAAAABBBBBBBB	4.32535	somatic	0	2.20925210912188e-05	1.22898539566263e-05
10	42300454	42321636	2	neutral	AA	1.92967	somatic	0	1.62476039125289e-05	8.55659850084178e-05
10	46515672	46561062	6	gain	AAABBB	0.517387	germline	1	4.24851405595973e-10	1.02430286474942e-11
10	52519256	52531360	2	neutral	AA	100	somatic	0	0.196492166819362	0.429280263607827
10	53989892	54023178	2	neutral	AA	27.3747	somatic	0	0.7937953376067	0.982900112708092
10	76318746	76327824	2	neutral	AA	100	somatic	0	0.315174706452182	0.618417565742147
10	76536618	79057276	2	neutral	AA	4.13994	somatic	0	8.76584416016652e-19	3.54161144855425e-14
10	86407430	86425586	2	neutral	AA	36.3786	germline	1	0.00879143604117656	0.0423026130397658
10	98929018	98935070	1	loss	A	-1	somatic	0	0.0143221543137729	0.0366679907935857
10	100305848	100317952	2	neutral	AA	42.4116	somatic	0	0.0941025706394796	0.202614502448141
10	102856766	103428680	2	neutral	AA	10.1426	germline	1	5.5175659005712e-19	5.88418203051333e-15
10	108013070	108034252	2	neutral	AA	100	germline	1	0.584726670838132	0.691104870590035
10	119971822	120068654	2	neutral	AA	36.3786	somatic	0	0.506670288531475	0.552386825010131
10	124377678	124429120	2	neutral	AA	27.3798	somatic	0	0.27889852810487	0.760912089457585
10	128462778	128465804	5	gain	AAABB	7.78444	germline	1	0.0832884278957576	0.270078306870018
10	133110714	133113740	4	gain	AAAB	23.1646	germline	1	0.0832973961587234	0.270093881087754
11	4947510	4953562	1	loss	A	-1	somatic	0	0.0143382103855325	0.0366896715615336
11	5764530	5788738	1	loss	A	-1	germline	1	9.72054152101035e-07	2.28153233083894e-07
11	7416726	7425804	2	neutral	AA	54.5678	somatic	0	0.231989362675235	0.372706182571287
11	9940410	10297478	2	neutral	AA	13.3417	somatic	0	0.621500624203678	0.232872365919181
11	19538882	19675052	2	neutral	AA	40.9574	somatic	0	0.0245194055682329	0.0786017131362934
11	20921764	20930842	2	neutral	AA	100	somatic	0	0.52884869888982	0.570932846390124
11	24120246	24129324	2	neutral	AA	100	somatic	0	0.230866994854583	0.456332725629161
11	24764784	24773862	2	neutral	AA	100	somatic	0	0.379113294979654	0.230212705927088
11	24970552	24991734	2	neutral	AA	54.5786	somatic	0	0.356884510138339	0.698901088355519
11	27040336	27046388	2	neutral	AA	100	somatic	0	0.526405204378127	0.486182249028195
11	27972344	27999578	2	neutral	AA	100	somatic	0	0.414082310545937	0.611164572440478
11	28989080	28992106	0	loss	-	-1	germline	1	0.0832667578227076	0.270040671883459
11	41652890	42294402	2	neutral	AA	22.5158	somatic	0	0.296795272408426	0.639501554534762
11	44285510	44306692	2	neutral	AA	54.6459	somatic	0	0.986843364357722	0.915123269242549
11	48776094	48942524	2	neutral	AA	0.49415	somatic	0	0.608848747899998	0.427208775668047
11	50688526	50821670	2	neutral	AA	1.35697	somatic	0	0.262431222963241	0.369751427423201
11	55968896	56011260	2	neutral	AA	54.5678	somatic	0	0.322188078990077	0.591626022558055
11	68802162	68820318	2	neutral	AA	54.5679	germline	1	0.138099061858163	0.363307411945231
11	72911470	73099082	2	neutral	AA	16.2324	somatic	0	0.751369521141525	0.647042348427892
11	73728490	73795062	2	neutral	AA	21.9241	germline	1	1.78039639593349e-05	0.000404893556714359
11	76939076	77020778	2	neutral	AA	54.568	somatic	0	0.842653502024014	0.996408279200774
11	85281758	85339252	2	neutral	AA	100	somatic	0	0.947247950448745	0.843842935378996
11	88419720	88425772	2	neutral	AA	54.5678	somatic	0	0.787738113551021	0.987011157829514
11	90710402	90755792	2	neutral	AA	54.5685	somatic	0	0.599885086661676	0.289459848722999
11	93355126	93391438	2	neutral	AA	100	somatic	0	0.972916188244689	0.925670009107298
11	95576210	95585288	2	neutral	AA	100	somatic	0	0.75899678473139	0.87951789160502
11	104397000	104403052	1	loss	A	-1	somatic	0	0.0143814989934213	0.0367993130324564
11	107913212	107919264	1	loss	A	-1	somatic	0	0.0144170673819819	0.0369403440890683
11	108581958	108627348	2	neutral	AA	100	somatic	0	0.0111309302065945	0.0463482815817587
11	108627348	108642478	2	neutral	AA	54.5678	somatic	0	0.435432281777858	0.425065688830211
11	115115092	115169560	2	neutral	AA	74.256	somatic	0	0.394052081167756	0.672187980946127
11	121714798	121781370	2	neutral	AA	27.8714	somatic	0	0.190706298211745	0.573381557390547
12	523498	544680	2	neutral	AA	54.5913	somatic	0	0.461887816525314	0.391801596997794
12	1727846	1758106	2	neutral	AA	54.5693	somatic	0	0.131402043153028	0.188738509856626
12	1758106	1797444	2	neutral	AA	18.191	somatic	0	0.587970164875094	0.844695481677018
12	2254370	2257396	5	gain	AAABB	9.80934	germline	1	0.0832899225519326	0.270080902527451
12	11562346	11574450	2	neutral	AA	100	somatic	0	0.0199866466145244	0.0646697900288099
12	12137286	12264378	2	neutral	AA	48.5061	somatic	0	0.000578752350013255	0.00244434963206808
12	13011800	13259932	2	neutral	AA	54.1568	somatic	0	0.00107562897393241	0.00453709002327185
12	14312980	14406786	2	neutral	AA	13.8034	somatic	0	0.543617522636646	0.885687667521582
12	17714204	18044038	2	neutral	AA	32.3362	somatic	0	0.161566139119502	0.152026032593103
12	18095480	18098506	1	loss	A	-1	germline	1	0.0832749769678811	0.270054946772516
12	18912500	18954864	2	neutral	AA	100	somatic	0	0.450898203156417	0.411961828307735
12	21287910	21296988	1	loss	A	-1	germline	1	0.0027084960435905	0.00497197388973225
12	30105674	30269078	2	neutral	AA	2.81885	somatic	0	0.0512702033932328	0.0698013950026276
12	31848650	31909170	3	gain	AAB	0.609172	germline	1	9.70314329807656e-15	0
12	32323732	32329784	2	neutral	AA	54.5678	somatic	0	0.535475112110076	0.917821832574658
12	33146804	33152856	1	loss	A	-1	germline	1	0.0143221543137729	0.0366640823400344
12	33945668	34717298	2	neutral	AA	4.17331	somatic	0	0.387869492254369	0.342530313741762
12	37259138	37262164	4	gain	-	-1	germline	1	0.0833026280066863	0.270102966350828
12	37365048	37368074	0	loss	-	-1	germline	1	0.0832652635032806	0.270038076508263
12	37368074	38200224	2	neutral	AA	1.54358	somatic	0	0.000219424133176246	0.000409332241087079
12	41885892	42376104	2	neutral	AA	1.85148	somatic	0	0.0184266748280772	0.077052754358346
12	45508014	45517092	1	loss	A	-1	germline	1	0.0027453623077439	0.00504867722937119
12	50207392	50376848	2	neutral	AA	15.8576	somatic	0	2.23791246995087e-12	2.54220933193494e-09
12	57342700	57506104	2	neutral	AA	36.3789	somatic	0	1.08773453964035e-07	2.39873225438281e-06
12	57506104	57509130	2	neutral	AA	-1	germline	1	NA	NA
12	57509130	57630170	2	neutral	AA	59.3456	germline	1	0.577025980442643	0.896976587450562
12	59542602	59554706	1	loss	A	-1	germline	1	0.000541248984640736	0.000696146757290683
12	69700884	70387786	2	neutral	AA	42.0417	somatic	0	0.00818440354957137	0.0318264798788465
12	74391184	74569718	2	neutral	AA	99.7998	somatic	0	0.489534303708274	0.505756708895006
12	79762334	79768386	4	gain	-	-1	germline	1	0.0143164912527295	0.0366473866894756
12	85635800	85735658	2	neutral	AA	36.5389	somatic	0	0.868010628038656	0.599726296150498
12	88698112	88704164	1	loss	A	-1	germline	1	0.0150045494936543	0.0387358785070144
12	90090072	90096124	1	loss	A	-1	germline	1	0.0143366749279614	0.0367195454007242
12	92955694	92961746	2	neutral	AA	54.5678	somatic	0	0.85951720342451	0.624848411108121
12	99382918	99401074	2	neutral	AA	100	somatic	0	0.630392020369246	0.902811428653902
12	99809584	100006274	2	neutral	AA	100	germline	1	0.620246619824581	0.702515849737201
12	100006274	100411758	2	neutral	AA	26.8754	somatic	0	1.61531884652506e-16	3.14415160573844e-13
12	100411758	100653838	2	neutral	AA	24.116	somatic	0	0.501131436381004	0.649720020520222
12	107786120	107831510	2	neutral	AA	54.5681	somatic	0	0.250257089298232	0.551866327277602
12	108575906	108624322	2	neutral	AA	46.5078	somatic	0	0.573720972705556	0.496353057744096
12	109864982	110013256	2	neutral	AA	33.5613	somatic	0	0.728239708771235	0.749071996222971
12	115457030	115481238	2	neutral	AA	54.5678	somatic	0	0.585951009159071	0.979100800679997
12	123109784	123121888	2	neutral	AA	100	somatic	0	0.132672432509772	0.155080282493365
12	131903340	131918470	2	neutral	AA	96.6895	germline	1	0.243104481663241	0.38476143939904
13	21375664	21378690	5	gain	-	-1	germline	1	0.0832914172298351	0.270083498203093
13	22020202	22023228	0	loss	-	-1	germline	1	0.0832660106602786	0.270039374193585
13	23058120	23064172	1	loss	A	-1	germline	1	0.0143801962914129	0.0368488878794667
13	29388512	29391538	1	loss	A	-1	somatic	0	0.0834656959729838	0.270386019052561
13	31957586	31966664	1	loss	A	-1	germline	1	0.0030382179466472	0.0060682500062218
13	37498192	37510296	1	loss	A	-1	germline	1	0.000533453616730247	0.00067310039641455
13	45423286	45426312	1	loss	A	-1	germline	1	0.0832734825289686	0.270052351297172
13	48957654	48963706	1	loss	A	-1	germline	1	0.0143205023835531	0.0366679907935857
13	50494862	50500914	1	loss	A	-1	germline	1	0.0143389191071802	0.0366822064250135
13	54858354	54867432	1	loss	A	-1	germline	1	0.00272300610104591	0.00501521467523502
13	61960376	61966428	1	loss	A	-1	germline	1	0.0148583252597857	0.038239519930368
13	63028554	63043684	3	gain	-	-1	germline	1	0.000118257834867915	0.000121589997601701
13	63058814	63061840	4	gain	-	-1	germline	1	0.0832988909452661	0.270096476854442
13	63061840	63064866	3	gain	-	-1	germline	1	0.0833504743885301	0.270186041956265
13	63064866	63067892	5	gain	-	-1	germline	1	0.0832891752211292	0.270079604696458
13	69824950	69834028	1	loss	A	-1	germline	1	0.0144825372168887	0.0371576297383813
13	86274286	86277312	2	neutral	AA	100	somatic	0	0.677496926769641	0.836693803814668
13	86791732	86794758	2	neutral	AA	100	somatic	0	0.359572903792816	0.6028648692487
13	87254710	87275892	2	neutral	AA	56.3546	somatic	0	0.758974019709845	0.648379820163214
13	87823598	87835702	2	neutral	AA	58.0998	somatic	0	0.652623706762551	0.784230348118126
13	89145960	89191350	1	loss	A	-1	germline	1	9.2894874660133e-11	1.4193091146808e-12
13	89397118	89400144	2	neutral	AA	100	somatic	0	0.0900921085082067	0.281699862744715
13	89518158	89527236	2	neutral	AA	50.3369	somatic	0	0.912145872318532	0.858288759059986
13	91669644	91820944	2	neutral	AA	27.284	somatic	0	0.0342249431132261	0.143607439947328
13	92202220	92205246	2	neutral	AA	100	somatic	0	0.353391633430544	0.597153890596301
13	93100942	93140280	2	neutral	AA	54.6201	somatic	0	0.616651483664796	0.509033991738016
13	94311342	94320420	2	neutral	AA	100	somatic	0	0.732210882493157	0.861883045398832
13	94928646	94931672	2	neutral	AA	100	somatic	0	0.143404276213703	0.362577787600188
13	95049686	95079946	2	neutral	AA	100	somatic	0	0.833248988530037	0.881136796809365
13	95600418	95609496	2	neutral	AA	54.6831	somatic	0	0.450541738963872	0.375880678240525
13	95757770	95760796	2	neutral	AA	100	somatic	0	0.597608240300398	0.78833768043718
13	96532426	96586894	2	neutral	AA	100	somatic	0	0.983145492067941	0.984561048136613
13	97258666	97261692	2	neutral	AA	100	somatic	0	0.32113862313202	0.566448296571463
13	97385758	97412992	2	neutral	AA	100	somatic	0	0.381055193932975	0.556462394692382
13	98602210	98608262	1	loss	A	-1	germline	1	0.0144257340837007	0.0369861466016341
13	98611288	98656678	2	neutral	AA	100	somatic	0	0.00066209950409796	0.00701287030066999
13	98977434	98989538	2	neutral	AA	55.0709	somatic	0	0.14511288041901	0.137087439703114
13	99107552	99134786	2	neutral	AA	55.5044	somatic	0	0.804118435320183	0.746549608482261
13	101837004	101840030	2	neutral	AA	100	somatic	0	0.470506315370796	0.697358805506358
13	102324190	102327216	2	neutral	AA	100	somatic	0	0.791609965239228	0.894067603817745
13	104563430	104566456	2	neutral	AA	54.5678	somatic	0	0.105757820074966	0.307155790982472
13	105080876	105099032	2	neutral	AA	60.9234	somatic	0	0.468654915661047	0.408687524164175
13	105773830	105776856	2	neutral	AA	100	somatic	0	0.170373121232011	0.398601463578256
13	106091560	106094586	2	neutral	AA	100	somatic	0	0.809047606310322	0.901674565107604
13	106315484	106318510	2	neutral	AA	100	somatic	0	0.743539995787327	0.871575465868004
13	106484940	106487966	2	neutral	AA	100	somatic	0	0.400407059223354	0.63945166935699
13	106956996	106963048	2	neutral	AA	54.5678	somatic	0	0.272356169986206	0.735050639170955
13	108990468	108999546	2	neutral	AA	38.3226	somatic	0	0.505866563455356	0.933794901374002
13	109214392	109220444	1	loss	A	-1	somatic	0	0.0155564502062249	0.0403414385775648
13	109374770	109377796	2	neutral	AA	100	somatic	0	0.510217396389849	0.727678651301148
13	109486732	109489758	2	neutral	AA	100	somatic	0	0.959483970202928	0.953800224748766
13	109544226	109547252	2	neutral	AA	100	somatic	0	0.22348555623124	0.463216099926353
13	109650136	109653162	2	neutral	AA	100	somatic	0	0.567927136518736	0.768677155533151
13	110491364	110500442	2	neutral	AA	90.629	somatic	0	0.0954670725624434	0.236009946041189
13	111438502	111441528	2	neutral	AA	100	somatic	0	0.232926747154963	0.473946716087654
13	112824410	112830462	2	neutral	AA	54.5678	somatic	0	0.230535672221128	0.710694610596143
13	112839540	112845592	2	neutral	AA	27.3007	somatic	0	0.858504524993713	0.736748934697723
13	113260154	113266206	2	neutral	AA	100	somatic	0	0.596407958169018	0.699776863209303
13	113514338	113532494	2	neutral	AA	11.7437	germline	1	0.0214596170943903	0.0809829208595361
14	0	16092268	3	gain	AAB	-1	somatic	0	NA	NA
14	16092268	16095294	9	gain	-	-1	germline	1	0.083268999342581	0.270044564980402
14	16095294	18488860	3	gain	AAB	-1	somatic	0	NA	NA
14	18491886	18658316	3	gain	AAB	-1	somatic	0	NA	NA
14	18658316	18661342	6	gain	AAAABB	10.5062	germline	1	0.083281702211841	0.270066626636905
14	18661342	18682524	3	gain	AAB	-1	somatic	0	NA	NA
14	18682524	19956470	3	gain	AAB	0.393953	germline	1	6.77288396193838e-28	0
14	22180580	22219918	2	neutral	AA	100	somatic	0	0.82454268003061	0.597299411730512
14	31310022	31379620	2	neutral	AA	36.3786	somatic	0	0.000485215565123715	7.03323029428438e-05
14	31978768	32060470	2	neutral	AA	60.5149	somatic	0	0.819505933634307	0.977422647521749
14	34348126	34351152	0	loss	-	-1	germline	1	0.0832667578227076	0.270040671883459
14	41141496	41202016	1	loss	A	-1	germline	1	2.04068902643089e-13	4.44089209850063e-16
14	41401732	41428966	2	neutral	AA	36.3789	somatic	0	0.534858277101019	0.604313122599904
14	42518326	42524378	1	loss	A	-1	somatic	0	0.0143248685640472	0.0366740318479015
14	49968338	49986494	2	neutral	AA	27.2839	somatic	0	0.0626011520955672	0.156372759268451
14	51932212	51968524	2	neutral	AA	86.0924	somatic	0	0.0145387082960071	0.0381282164694396
14	76140212	76161394	2	neutral	AA	36.3804	somatic	0	0.241514570301337	0.380000811013964
14	82031834	82037886	0	loss	-	-1	germline	1	0.014308000364719	0.0366342479848013
14	82161952	82467578	2	neutral	AA	27.4663	somatic	0	0.00236073177471176	0.0161019010683247
14	82939634	82991076	2	neutral	AA	54.5678	germline	1	0.550637094002816	0.223055184225589
14	92759004	92807420	2	neutral	AA	15.5908	somatic	0	0.224776564276384	0.169296313526418
14	99927598	99930624	5	gain	AAABB	8.13854	somatic	0	0.0832906698881679	0.270082200362996
14	104203336	104775250	2	neutral	AA	7.20247	germline	1	0.0116589991022995	0.0458530632526734
14	106866216	106881346	3	gain	AAB	6.76527	somatic	0	0.000124685456064592	0.000125153845377368
15	17078744	17081770	9	gain	-	-1	germline	1	0.0832675049905676	0.270041969577894
15	20271174	20274200	7	gain	AAAAABB	32.5222	germline	1	0.0832787131602109	0.270061435540547
15	20340772	20343798	14	gain	AAAAAAAAABBBBB	20.9179	germline	1	0.0832660106602786	0.270039374193593
15	20343798	20358928	7	gain	AAAAABB	4.07769	germline	1	0.000107583254324648	9.08449711846115e-05
15	20380110	20383136	3	gain	AAB	12.5321	germline	1	0.0833071126596569	0.270110753896718
15	20649424	20670606	6	gain	AAAABB	1.30435	somatic	0	2.21156468652261e-05	1.23009360614157e-05
15	22225970	22259256	4	gain	AAAB	2.24797	germline	1	2.21467425543968e-05	1.23134596250463e-05
15	27303598	27309650	1	loss	A	-1	somatic	0	0.0144060328931528	0.0369142445654035
15	53063936	53079066	2	neutral	AA	72.2974	somatic	0	0.415860261839698	0.407465104072197
15	55400008	55421190	2	neutral	AA	27.2843	somatic	0	0.154689753244013	0.211234648031186
15	55723790	55760102	2	neutral	AA	54.5873	somatic	0	0.00278046244799655	0.0111249984786806
15	59485108	59527472	2	neutral	AA	35.409	somatic	0	0.0688975299367171	0.134917026243064
15	63497584	63576260	2	neutral	AA	33.6474	somatic	0	0.448656883145704	0.640308858975614
15	63785054	63809262	2	neutral	AA	46.6831	somatic	0	0.762452157376047	0.893146405572279
15	64698906	64726140	2	neutral	AA	54.5678	somatic	0	0.000259777403150147	0.00110699851537244
15	64819946	64865336	2	neutral	AA	36.3786	somatic	0	0.00748682911904833	0.0331543127308648
15	65521978	65528030	1	loss	A	-1	germline	1	0.0143094152041585	0.0366374435065591
15	65667226	65682356	2	neutral	AA	54.5678	somatic	0	0.457982695404093	0.769979533222731
15	67149966	67152992	2	neutral	AA	100	somatic	0	0.391855907565426	0.631943987172938
15	68351288	68363392	2	neutral	AA	38.5115	somatic	0	0.0295974259400024	0.0430193738720005
15	70402916	70405942	2	neutral	AA	100	somatic	0	0.0899003790111175	0.281378854322737
15	71295586	71301638	2	neutral	AA	54.571	somatic	0	0.346973925337847	0.748273666469777
15	73371422	73395630	2	neutral	AA	44.1757	somatic	0	0.907699655682322	0.981175394773687
15	74660498	74751278	2	neutral	AA	22.5328	somatic	0	0.168396424405667	0.3390997586423
15	75441206	75525934	2	neutral	AA	18.2422	somatic	0	7.54467447883017e-07	9.32029872169338e-08
15	75943522	75946548	2	neutral	AA	100	somatic	0	0.163111870957034	0.38914981952142
15	76591086	76603190	1	loss	A	-1	germline	1	0.000538023401347858	0.000686423544807968
15	79335668	79447630	2	neutral	AA	53.8036	somatic	0	0.474921240159445	0.325523888713702
15	79825880	79828906	2	neutral	AA	100	somatic	0	0.252830961669863	0.496046975851665
15	81187580	81281386	2	neutral	AA	48.5561	somatic	0	0.0425850669916326	0.0261168559999226
15	81956184	81959210	2	neutral	AA	100	somatic	0	0.662580809549269	0.828167416829098
15	88486292	88489318	2	neutral	AA	100	somatic	0	0.111490276809677	0.316061140436104
15	93712194	93724298	2	neutral	AA	54.5679	somatic	0	0.601013543195157	0.398494036948799
15	95331104	95340182	2	neutral	AA	54.5679	somatic	0	0.990665406910103	0.960897153333881
15	98432754	98499326	2	neutral	AA	52.9516	somatic	0	0.636684877497336	0.717881380630964
15	101464806	101476910	2	neutral	AA	53.6384	somatic	0	0.767774484686403	0.889538026087046
16	844254	847280	4	gain	AABB	8.83949	germline	1	0.0833048703087259	0.270106860103288
16	1022788	1025814	3	gain	AAB	4.3514	somatic	0	0.0833063652039141	0.270109455961023
16	13617000	13653312	2	neutral	AA	22.0311	somatic	0	0.706040646267914	0.635859300276252
16	19935288	19953444	1	loss	A	-1	germline	1	2.22092283860234e-05	1.23687086120983e-05
16	21557224	21584458	4	gain	AABB	3.91055	germline	1	2.04238844958139e-07	3.05950885737261e-08
16	22416608	22425686	2	neutral	AA	100	somatic	0	0.400659522946351	0.433759584057844
16	22613298	22698026	4	gain	AAAB	1.9587	germline	1	2.28117112891859e-19	0
16	23103510	23112588	2	neutral	AA	100	somatic	0	0.548664818296409	0.637857913369678
16	25021994	25040150	2	neutral	AA	54.5678	somatic	0	0.0225205957972182	0.0696421392131733
16	34060656	34066708	14	gain	AAAAAAAAABBBBB	2.56834	germline	1	0.0143063498746746	0.036632117772444
16	34075786	34084864	2	neutral	AA	21.8274	germline	1	0.007153908207984	0.0137422417200018
16	34084864	34087890	11	gain	AAAAAAABBBB	99.6685	germline	1	0.0832660106602786	0.270039374193593
16	34087890	34093942	2	neutral	AA	7.79541	germline	1	0.032697355062155	0.0745424390170278
16	34093942	34096968	3	gain	AAB	8.753	germline	1	0.0833048703087259	0.270106860103288
16	34096968	34099994	10	gain	AAAAAAABBB	6.07514	germline	1	0.0832667578227076	0.270040671883467
16	34205904	34959378	2	neutral	AA	1.23239	somatic	0	0.000127433444488878	0.00148353456502215
16	35948880	35960984	1	loss	A	-1	germline	1	0.0143326598015523	0.0366839837179261
16	35979140	36088076	2	neutral	AA	3.1687	germline	1	0.522266316524162	0.663147127880885
16	36121362	36127414	4	gain	-	-1	germline	1	0.0143168451361679	0.0366512935858246
16	50561434	50588668	2	neutral	AA	41.2047	somatic	0	0.0260772884029841	0.0572286628333384
16	54310648	54359064	2	neutral	AA	13.6489	somatic	0	0.930005944919027	0.698953073747377
16	55766154	55787336	1	loss	A	-1	germline	1	0.000534040555577984	0.000672943878697096
16	63621650	63630728	2	neutral	AA	36.3924	somatic	0	0.131009528059555	0.107870983534935
16	70151758	70163862	3	gain	AAB	3.96355	germline	1	0.000533382891672059	0.000672448464325792
16	75365556	75371608	2	neutral	AA	54.5678	somatic	0	0.496496257548963	0.846191018977325
16	75507778	75544090	3	gain	AAB	100	germline	1	9.31853070443179e-09	5.69898683799863e-10
16	78167632	78185788	2	neutral	AA	100	somatic	0	0.509270195792667	0.820199648824758
16	85194004	85200056	1	loss	A	-1	somatic	0	0.0143251046072522	0.0366605295167419
16	85596462	85599488	2	neutral	AA	100	somatic	0	0.161112516506299	0.386507461032134
17	1915458	1933614	2	neutral	AA	66.0761	somatic	0	0.0250760362894966	0.0770268220896589
17	11728776	11762062	2	neutral	AA	54.5678	somatic	0	0.915933692971883	0.996506042701919
17	21290936	21303040	4	gain	AABB	0.309958	germline	1	0.000532796626389776	0.000671640890635872
17	21675238	21859824	4	gain	-	-1	germline	1	2.04790953082942e-07	3.10289952620835e-08
17	21977838	21983890	10	gain	-	-1	germline	1	0.0143067035369734	0.0366324728003109
17	21986916	22159398	6	gain	AAAABB	0.386056	germline	1	1.9778252048759e-09	7.56741336260802e-11
17	26713528	26804308	3	gain	-	-1	somatic	0	6.69509497379464e-06	2.68100308972175e-05
17	26807334	26828516	3	gain	-	-1	germline	1	2.2382571393322e-05	1.28092911001465e-05
17	26876932	26879958	5	gain	-	-1	germline	1	0.0832914172298351	0.270083498203093
17	26937452	26940478	18	gain	AAAAAAAAAAAABBBBBB	15.2945	germline	1	0.0832652635032806	0.270038076508272
17	30943876	31409880	2	neutral	AA	28.1514	somatic	0	5.63117695272423e-06	0.000331049180719023
17	39967408	40088448	2	neutral	AA	28.3283	germline	1	0.00496799079463066	0.00218624114336996
17	42391234	42409390	2	neutral	AA	8.53705	somatic	0	0.0447759893622969	0.178610684502106
17	43338372	43359554	2	neutral	AA	54.5678	somatic	0	0.0179241566335412	0.028970493057681
17	43656102	43683336	2	neutral	AA	23.7583	somatic	0	0.590554336637222	0.375337847150493
17	50809566	50867060	2	neutral	AA	17.743	germline	1	0.422418217453512	0.11904666762998
17	53775046	53778072	0	loss	-	-1	germline	1	0.0832660106602786	0.270039374193585
17	62946852	63034606	2	neutral	AA	66.9779	somatic	0	0.300464911427648	0.198128676539712
17	63249452	63285764	2	neutral	AA	27.5591	somatic	0	0.341025992972599	0.338379837702107
17	63488506	63627702	2	neutral	AA	5.47334	somatic	0	0.83289904202396	0.842151308810622
17	63809262	63851626	2	neutral	AA	34.2472	somatic	0	0.583161736770048	0.813074063060012
17	66795924	66798950	6	gain	AAAAAA	6.71543	germline	1	0.0832802076751629	0.270064031079621
17	66798950	66801976	4	gain	AAAA	4.12564	germline	1	0.0832973961587234	0.270093881087754
17	68463250	68475354	2	neutral	AA	100	somatic	0	0.669070141683601	0.362592714976991
17	74394210	74415392	2	neutral	AA	27.2839	somatic	0	0.235431279552949	0.272048941224236
17	80742758	80745784	6	gain	AAAABB	3.33245	germline	1	0.083281702211841	0.270066626636905
18	142222	157352	1	loss	A	-1	germline	1	0.000112365727697906	9.74927638955903e-05
18	29594280	29597306	1	loss	A	-1	germline	1	0.0832891752211292	0.27007960469645
18	41283718	41289770	1	loss	A	-1	germline	1	0.0143146040047044	0.0366541351938668
18	48016568	48019594	2	neutral	AA	100	germline	1	0.387047805707584	0.62773073997597
18	48152738	48189050	2	neutral	AA	22.7732	somatic	0	0.710615138793382	0.747587815375814
18	48664132	48667158	2	neutral	AA	100	somatic	0	0.173131751749902	0.402151820077263
18	51245310	51248336	2	neutral	AA	100	germline	1	0.835378565205292	0.912461008789481
18	51895900	51898926	2	neutral	AA	100	germline	1	0.707447439736983	0.853078171727228
18	56434900	56519628	2	neutral	AA	100	somatic	0	0.492733755233591	0.433107723830874
18	56580148	56601330	2	neutral	AA	54.8372	somatic	0	0.93382478103615	0.998543037092067
18	57279154	57282180	1	loss	A	-1	germline	1	0.0832749769678811	0.270054946772516
18	57751210	57754236	2	neutral	AA	100	germline	1	0.119566215014012	0.32829946605252
18	58465346	58468372	2	neutral	AA	100	somatic	0	0.227604886814404	0.467903111334196
18	58565204	58574282	2	neutral	AA	15.5918	germline	1	0.777277899601805	0.707725155277634
18	58867804	58892012	2	neutral	AA	54.5679	somatic	0	0.000435132579278407	0.00159928655559993
18	59276314	59436692	2	neutral	AA	100	somatic	0	0.943762656049199	0.771950082242225
18	62465718	62468744	2	neutral	AA	100	germline	1	0.462437279860336	0.691010345566241
18	63297868	63300894	2	neutral	AA	100	somatic	0	0.084434804487995	0.272064088885791
18	63721508	63724534	2	neutral	AA	100	germline	1	0.464744878463546	0.692844922878712
18	65376730	65379756	2	neutral	AA	100	germline	1	0.856333115949845	0.92053189222508
18	65509874	65512900	2	neutral	AA	100	somatic	0	0.103252486289148	0.303185798128893
18	66057580	66066658	1	loss	A	-1	germline	1	0.00278119654202516	0.00519044364336396
18	67343630	67567554	2	neutral	AA	100	somatic	0	0.140720361477512	0.451993726312577
18	69540506	69549584	1	loss	A	-1	germline	1	0.00271190126751403	0.00497913275328099
18	69849158	69855210	2	neutral	AA	100	somatic	0	0.505432702563454	0.727525626704299
18	71952228	71976436	2	neutral	AA	24.8077	somatic	0	0.86146329722492	0.995505461309645
18	72893314	72902392	2	neutral	AA	54.5678	somatic	0	0.829105549550306	0.908801451090641
18	74306456	74321586	2	neutral	AA	36.3786	somatic	0	0.42340454265128	0.156820751794919
18	75093216	75132554	2	neutral	AA	29.7887	somatic	0	0.753276850859781	0.806345626772154
18	77689524	78818222	2	neutral	AA	9.91331	somatic	0	0.0288442761483332	0.122018909020844
18	79169238	79175290	2	neutral	AA	54.5678	somatic	0	0.647797299208172	0.721501191605806
18	79365928	79378032	2	neutral	AA	27.2839	germline	1	0.491702695588468	0.360655264391821
19	5785712	5918856	2	neutral	AA	12.2499	germline	1	3.99619096037042e-07	3.17440122854507e-06
19	5918856	6091338	2	neutral	AA	5.09594	germline	1	0.00889478336825683	0.0196969229274979
19	7450012	7453038	11	gain	AAAAAAABBBB	5.10638	germline	1	0.0832667578227076	0.270040671883467
19	8630152	8920648	2	neutral	AA	0.808349	germline	1	7.5396821989423e-08	1.95198944921149e-05
19	8920648	8923674	1	loss	A	-1	somatic	0	0.0837850979206205	0.270939764970974
19	11928492	11934544	1	loss	A	-1	somatic	0	0.0143383285036614	0.0367021164094247
19	13710806	13777378	2	neutral	AA	17.5432	somatic	0	0.00209071665207274	0.00155138636898899
19	18180208	18286118	2	neutral	AA	100	somatic	0	0.00887336948852556	0.124138666086554
19	21505782	21587484	2	neutral	AA	0.287802	germline	1	0.198945826425768	0.124663129473991
19	22958262	22961288	1	loss	A	-1	somatic	0	0.0832787131602109	0.270061435540538
19	24329040	24368378	4	gain	AABB	0.786862	germline	1	4.25994951419641e-10	1.02721164907393e-11
19	24368378	24419820	5	gain	AAABB	1.616	germline	1	4.33200917801397e-08	4.13050549319394e-09
19	27336884	27339910	4	gain	AAAB	6.12547	germline	1	0.0832973961587234	0.270093881087754
19	27345962	27379248	5	gain	AAABB	0.270304	germline	1	2.03890483051355e-07	3.05084857377125e-08
19	27379248	27382274	3	gain	AAB	2.642	germline	1	0.0833250532272812	0.270141905719134
19	27382274	27388326	6	gain	AAAABB	0.540389	germline	1	0.0143123631827129	0.036642769918111
19	27388326	27400430	5	gain	AAABB	0.514125	germline	1	0.000532622110279288	0.000671484691108004
19	27400430	27406482	3	gain	AAB	35.7727	germline	1	0.0143346672407548	0.0366846946561881
19	27406482	27409508	2	neutral	AA	58.9083	somatic	0	0.130484072631092	0.344319559541483
19	27470028	27473054	1	loss	A	-1	somatic	0	0.0832734825289686	0.270052351297172
19	28392958	28501894	2	neutral	AA	20.0007	somatic	0	0.646438623642275	0.707104282082885
19	29512578	29515604	1	loss	A	-1	somatic	0	0.0832809549407862	0.270065328855979
19	44760592	44784800	2	neutral	AA	18.19	somatic	0	0.0048628469275655	0.0465073723231719
19	53015520	53048806	3	gain	AAB	2.76401	germline	1	4.36146349139477e-08	4.18590606621194e-09
20	60520	66572	8	gain	-	-1	somatic	0	0.0143085898661546	0.0366360232445618
20	2765764	2799050	2	neutral	AA	36.3845	somatic	0	0.501492990891788	0.762939295150575
20	6160936	6218430	2	neutral	AA	54.5678	germline	1	0.354367132061472	0.658923297090049
20	6239612	6248690	2	neutral	AA	54.5678	somatic	0	0.148811812213344	0.539211741883197
20	7634598	7661832	2	neutral	AA	100	somatic	0	0.719318243850044	0.769417884449249
20	13008774	13045086	2	neutral	AA	54.5679	somatic	0	0.774712416624723	0.314416887989111
20	15111844	15126974	2	neutral	AA	54.5679	somatic	0	0.281568593566218	0.599618494607581
20	15789668	15792694	2	neutral	AA	100	somatic	0	0.111158964825593	0.315544770457483
20	16055956	16158840	2	neutral	AA	100	somatic	0	0.950500181466034	0.985895056696317
20	16655104	16670234	2	neutral	AA	100	somatic	0	0.943827111665991	0.852642436479138
20	18228624	18231650	2	neutral	AA	100	somatic	0	0.223357891535784	0.463080230984251
20	20144082	20177368	2	neutral	AA	54.5789	somatic	0	0.0853244742920681	0.20655145957106
20	20346824	20380110	2	neutral	AA	13.2154	germline	1	0.117806346096092	0.239919102238872
20	21284884	21309092	2	neutral	AA	100	somatic	0	0.0102637614886629	0.0742879832486012
20	22225970	22410556	2	neutral	AA	21.8279	somatic	0	0.0116913705079096	0.0162500533795508
20	23445448	23481760	2	neutral	AA	36.9904	somatic	0	0.0127668968234658	0.0263446557892013
20	23572540	23623982	2	neutral	AA	61.2721	germline	1	0.0256436600586987	0.0431101120538997
20	23929608	23944738	2	neutral	AA	45.9549	somatic	0	0.318066325469672	0.686542114107187
20	26280810	26380668	2	neutral	AA	32.3998	somatic	0	0.00050381874286268	0.0218415211154349
20	28780286	28789364	7	gain	-	-1	germline	1	0.0027006874435026	0.00495898194079525
20	28804494	28822650	9	gain	-	-1	germline	1	2.21002833817537e-05	1.22962875616084e-05
20	28952768	28955794	4	gain	-	-1	germline	1	0.0832988909452661	0.270096476854442
20	29264446	29376408	3	gain	-	-1	germline	1	5.94099980481193e-10	3.44096084958778e-10
20	30281182	30284208	4	gain	AABB	7.08933	somatic	0	0.0832973961587234	0.270093881087754
20	30813758	30816784	9	gain	-	-1	germline	1	0.083268999342581	0.270044564980402
20	30937824	30943876	5	gain	-	-1	germline	1	0.0143136604629905	0.036642769918111
20	30995318	31182930	3	gain	-	-1	somatic	0	5.42399355624755e-06	2.11840067965152e-06
20	31182930	31188982	14	gain	-	-1	germline	1	0.0143063498746746	0.0366317627475876
20	31188982	31240424	3	gain	AAB	1.78869	germline	1	2.27237678305008e-05	1.31248916810378e-05
20	31240424	31243450	40	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBB	100	germline	1	0.0832652635032806	0.270038076508272
20	31243450	31246476	2	neutral	AA	7.53286	somatic	0	0.0855996454135099	0.274069665485932
20	31546050	31582362	2	neutral	AA	27.2878	somatic	0	0.918156875728713	0.924567196303554
20	32708034	32735268	2	neutral	AA	70.2665	somatic	0	0.00549523550741673	0.0197807643240967
20	34024344	34030396	2	neutral	AA	27.2879	somatic	0	0.836798453886289	0.811465449812364
20	35252900	35292238	2	neutral	AA	54.5678	somatic	0	0.185087190614767	0.145058169171184
20	37201644	37237956	2	neutral	AA	27.5069	somatic	0	0.950155888852477	0.858310181376742
20	37368074	37452802	2	neutral	AA	100	somatic	0	0.0156636160745916	0.0179381469917355
20	38496772	38517954	2	neutral	AA	54.5678	somatic	0	0.218595353274033	0.373812646705598
20	40766272	40787454	2	neutral	AA	54.5678	germline	1	0.234288824032348	0.208618559728705
20	41758800	41761826	2	neutral	AA	100	somatic	0	0.549708680170048	0.756113257763514
20	43519932	43522958	2	neutral	AA	100	somatic	0	0.527364151229039	0.740234240363748
20	43613738	43619790	2	neutral	AA	100	somatic	0	0.436377215452	0.766138061489683
20	43640972	43647024	1	loss	A	-1	somatic	0	0.0143366749279614	0.0367195454007242
20	45868108	45886264	2	neutral	AA	54.5873	germline	1	0.590627933392524	0.586475644541034
20	48582430	48667158	2	neutral	AA	23.997	germline	1	0.00108801400542411	0.00568123669736065
20	51411740	51417792	2	neutral	AA	54.5678	germline	1	0.246733806518226	0.262810893364803
20	55200292	55230552	2	neutral	AA	54.5679	somatic	0	0.249543152899207	0.21841050108119
20	56368328	56374380	2	neutral	AA	18.1893	somatic	0	0.914461877666424	0.997272020488888
20	57133906	57142984	2	neutral	AA	54.5678	somatic	0	0.470732814267912	0.860111875326863
20	58426008	58444164	2	neutral	AA	54.5678	germline	1	0.757437979168332	0.737372815508858
20	59007000	59013052	2	neutral	AA	37.003	somatic	0	0.827349425963989	0.946121159027867
20	61200850	61246240	2	neutral	AA	53.3348	somatic	0	0.0231205699078414	0.0420415169905891
20	61821180	61869596	2	neutral	AA	7.75985	somatic	0	0.115208654182262	0.141083291639203
20	62105624	62175222	2	neutral	AA	7.85527	somatic	0	0.3767099192335	0.366206652370911
20	63043684	63055788	2	neutral	AA	24.0589	germline	1	0.143906761384824	0.316238870041011
20	63485480	63530870	2	neutral	AA	9.94812	germline	1	0.887980940125464	0.959656415394539
21	10690858	10693884	47	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBB	100	germline	1	0.0832652635032806	0.270038076508272
21	10693884	10739274	6	gain	AAAABB	0.470113	germline	1	1.97503799282281e-11	1.87627691161651e-13
21	15214728	15217754	1	loss	A	-1	germline	1	0.0832802076751629	0.270064031079613
21	16969808	16972834	1	loss	A	-1	germline	1	0.0832966487736002	0.27009258321123
21	17463046	17484228	2	neutral	AA	22.5436	somatic	0	0.00333800225542351	0.014723400578784
21	20585878	20588904	1	loss	A	-1	germline	1	0.0832914172298351	0.270083498203085
21	24214052	24374430	2	neutral	AA	63.7169	somatic	0	8.11945796355489e-05	0.000970787070882606
21	27766576	27814992	2	neutral	AA	100	somatic	0	0.447249133489809	0.237356578968506
21	32596072	32868412	2	neutral	AA	27.2852	somatic	0	0.559561279809988	0.819408397957968
21	33615834	33621886	2	neutral	AA	54.568	somatic	0	0.0975451965591098	0.146819781458936
21	37129020	37156254	2	neutral	AA	54.5678	somatic	0	0.100602551181035	0.121302697283334
21	45795484	45798510	4	gain	AAAB	3.69993	germline	1	0.0833026280066863	0.270102966350828
21	45967966	45970992	1	loss	A	-1	germline	1	0.08330935505948	0.270114647731112
21	46400684	46482386	2	neutral	AA	16.0914	somatic	0	0.113303520195879	0.0299183886728657
22	11619840	11628918	4	gain	AABB	17.6587	germline	1	0.0143176708941987	0.0366502280325003
22	16785222	16794300	2	neutral	AA	54.6231	somatic	0	0.643244485084397	0.857078278095092
22	17075718	17078744	2	neutral	AA	100	somatic	0	0.151382366905712	0.373498729225239
22	18095480	18107584	2	neutral	AA	9.1027	somatic	0	0.875622208535629	0.619661647216306
22	18730940	18733966	3	gain	AAB	5.84088	somatic	0	0.0833071126596569	0.270110753896718
22	19696234	19699260	2	neutral	AA	100	somatic	0	0.54744864515082	0.754527799110411
22	22347010	22356088	2	neutral	AA	1.3433	somatic	0	0.485756165710903	0.656522571231919
22	23197316	23200342	2	neutral	AA	100	somatic	0	0.602634044979672	0.79160037429829
22	24117220	24120246	2	neutral	AA	100	somatic	0	0.100723590976224	0.299151378652065
22	24144454	24168662	2	neutral	AA	54.5678	somatic	0	0.229697253821012	0.626779258994932
22	24940292	24946344	2	neutral	AA	54.5685	somatic	0	0.808637831047381	0.934243799670753
22	25170268	25173294	2	neutral	AA	100	somatic	0	0.850641476260708	0.918409498370898
22	27167428	27176506	2	neutral	AA	62.0802	somatic	0	0.505154856380337	0.910012482157865
22	27294520	27303598	2	neutral	AA	72.6132	somatic	0	0.179583200924518	0.373267297966391
22	27706056	27709082	2	neutral	AA	100	somatic	0	0.137030115872706	0.353660274695688
22	27814992	27818018	2	neutral	AA	100	somatic	0	0.878954779617702	0.928752219222099
22	28722792	28725818	2	neutral	AA	100	somatic	0	0.436868143778364	0.670263428214031
22	29119198	29122224	3	gain	AAA	56.5518	germline	1	0.083314587515874	0.270123733504057
22	29715320	29718346	2	neutral	AA	100	somatic	0	0.208871359405787	0.446128844708088
22	29821230	29824256	2	neutral	AA	100	germline	1	0.116069608000199	0.323042019683535
22	30045154	30066336	2	neutral	AA	27.362	somatic	0	0.163000391836886	0.207227334938697
22	31225294	31228320	2	neutral	AA	15.9901	somatic	0	0.349262244157583	0.593393856226796
22	31891014	31906144	2	neutral	AA	35.2981	somatic	0	0.108123681951121	0.217032093782217
22	34054604	34109072	2	neutral	AA	91.5605	somatic	0	0.000638286198997493	0.00039456495018575
22	34142358	34145384	2	neutral	AA	100	somatic	0	0.798072967541683	0.896924092459304
22	34795974	34799000	2	neutral	AA	100	somatic	0	0.227953559015015	0.468305547007428
22	34874650	34886754	2	neutral	AA	54.8597	somatic	0	0.331870685434392	0.400163355743805
22	36690250	36729588	2	neutral	AA	26.9747	somatic	0	0.118430822248982	0.191231572615853
22	37470958	37473984	2	neutral	AA	100	somatic	0	0.938003298199462	0.947744663990308
22	37737246	37761454	2	neutral	AA	27.3897	somatic	0	0.208446670835837	0.265264985755091
22	38330342	38333368	2	neutral	AA	100	somatic	0	0.239647892598596	0.48149519306087
22	39114076	39117102	2	neutral	AA	14.1993	somatic	0	0.592086589089126	0.784751645870857
22	39685990	39689016	2	neutral	AA	100	somatic	0	0.196618616290021	0.431432912274708
22	40711804	40714830	2	neutral	AA	100	germline	1	0.111841286610324	0.316599887806393
22	40950858	40956910	2	neutral	AA	54.6842	somatic	0	0.458166461687689	0.893129679710966
22	41689202	41701306	2	neutral	AA	36.5161	somatic	0	0.0614189338574136	0.0908771486623055
22	43335346	43338372	2	neutral	AA	36.3786	somatic	0	0.578363727099858	0.77578195983779
22	44088820	44091846	2	neutral	AA	100	somatic	0	0.129368186849737	0.342704181952744
22	44252224	44255250	2	neutral	AA	100	somatic	0	0.137477404721482	0.354293014837946
22	44515486	44518512	2	neutral	AA	100	somatic	0	0.659156347866175	0.826177823505459
22	44663760	44666786	2	neutral	AA	100	somatic	0	0.87397914279717	0.926991225388116
22	44706124	44709150	2	neutral	AA	100	somatic	0	0.621444892229676	0.803484192572007
22	45553404	45710756	2	neutral	AA	100	germline	1	0.0878745716831563	0.157838186651008
22	45753120	45756146	2	neutral	AA	100	somatic	0	0.0948877409696643	0.28967158192754
22	46642764	46654868	2	neutral	AA	48.4209	somatic	0	0.717411568226173	0.971552925463196
22	47157184	47163236	2	neutral	AA	36.7139	somatic	0	0.608941157035332	0.805005033515383
22	47650422	47713968	2	neutral	AA	25.6869	somatic	0	0.529726756429843	0.323100981401951
22	47883424	47919736	2	neutral	AA	27.2881	somatic	0	0.22474047866112	0.155775689642969
22	47931840	47940918	2	neutral	AA	36.5471	somatic	0	0.130567214794108	0.102033852476
22	48216284	48228388	2	neutral	AA	54.5696	somatic	0	0.770840879154613	0.98815376274276
22	49148292	49157370	2	neutral	AA	8.75494	somatic	0	0.468046809886124	0.499459182177457
22	49378268	49381294	2	neutral	AA	100	somatic	0	0.107621122017014	0.310062119524382
22	50373822	50419212	2	neutral	AA	25.1967	somatic	0	0.11657120107571	0.050194098624585
22	50643136	50646162	4	gain	AAAB	25.2303	germline	1	0.0832944066508231	0.270088689609005
22	50709708	50721812	2	neutral	AA	54.5678	somatic	0	0.0334375905714504	0.137592164797458
X	15021064	15024090	1	loss	A	-1	somatic	0	0.0832734825289686	0.270052351297172
X	26084120	26087146	0	loss	-	-1	somatic	0	0.0832704937163188	0.270047160401111
X	30017920	30020946	1	loss	A	-1	germline	1	0.0832719881117813	0.270049755840037
X	41304900	41320030	2	neutral	AA	54.5678	somatic	0	0.271844849283943	0.183480786795285
X	50225548	50228574	0	loss	-	-1	germline	1	0.0832660106602786	0.270039374193585
X	52364930	52555568	2	neutral	AA	100	somatic	0	0.287666138850599	0.39864788902365
X	52582802	53063936	2	neutral	AA	6.74737	somatic	0	0.0722643756058746	0.0809267545325729
X	53076040	53672162	2	neutral	AA	13.6593	germline	1	4.23944051932742e-06	0.000161209587979161
X	58489554	58498632	1	loss	A	-1	somatic	0	0.0143358482031925	0.036679362913051
X	62553472	62686616	2	neutral	AA	3.83441	somatic	0	0.000204570447693538	0.00281209539598415
X	79665502	79671554	1	loss	A	-1	germline	1	0.0143089435772999	0.036637088436543
X	80546068	80573302	2	neutral	AA	36.3786	somatic	0	0.186481917394855	0.568763340275211
X	92199194	93636544	2	neutral	AA	12.1632	somatic	0	6.26905759304835e-07	7.03289996162315e-06
X	108772596	108775622	0	loss	-	-1	germline	1	0.083268999342581	0.270044564980394
X	110382428	110933160	2	neutral	AA	60.2868	somatic	0	0.000199720581708274	0.000840136528111324
X	119445298	119472532	2	neutral	AA	2.17741	somatic	0	0.0185697464566316	0.0488678653515426
X	119738820	119744872	1	loss	A	-1	somatic	0	0.0143825649179371	0.0368570965424245
X	125273374	125279426	0	loss	-	-1	germline	1	0.0143061141040932	0.0366314077257394
X	126504956	126541268	2	neutral	AA	54.5678	germline	1	0.238538946382953	0.404631940514615
X	126777296	126780322	1	loss	A	-1	somatic	0	0.0832749769678811	0.270054946772516
X	141380772	141386824	1	loss	A	-1	somatic	0	0.0143409273196563	0.036701405175786
X	154740562	155043162	2	neutral	AA	25.2203	somatic	0	0.869539587903584	0.73684446676849
