chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	1448034	1493004	1	loss	A	-1	germline	1	4.0056166990439e-05	2.3132670909809e-05
1	16611918	16635902	6	gain	-	-1	germline	1	0.00270065422271387	0.00495867752699786
1	16719846	16725842	4	gain	-	-1	germline	1	0.0143114613081172	0.0366408601422376
1	16881738	16938700	3	gain	-	-1	germline	1	4.40669986273682e-08	4.46369463613649e-09
1	31431032	31434030	4	gain	-	-1	germline	1	0.0832822074583244	0.270067512693411
1	49386054	49484988	1	loss	A	-1	germline	1	1.0554555806675e-20	0
1	72299768	72347736	1	loss	A	-1	germline	1	5.83788975730138e-11	1.2081446953971e-12
1	109642856	109648852	1	loss	A	-1	germline	1	0.0185745616101734	0.0497385726163547
1	125079558	125082556	10	gain	-	-1	germline	1	0.0832682018203455	0.270043188440368
1	125082556	125085554	5	gain	-	-1	germline	1	0.0832785215791194	0.270061111419135
1	125163502	125166500	5	gain	-	-1	germline	1	0.0832770472644381	0.270058550940435
1	151393004	151488940	2	neutral	AA	47.1907	somatic	0	3.08231606301839e-06	7.22670628749977e-06
1	156012922	156111856	2	neutral	AA	18.1893	germline	1	9.30390202312156e-06	1.45052374929122e-05
1	157625846	157769750	2	neutral	AA	50.0618	somatic	0	0.849642837807809	0.145133672169209
1	162389668	162521580	2	neutral	AA	35.3319	somatic	0	7.1778404437909e-08	9.7419265876475e-08
1	174972274	175017244	2	neutral	AA	54.5678	somatic	0	0.337093314264216	0.244478837841142
1	180374670	180449620	2	neutral	AA	100	somatic	0	0.330264595191411	0.182716416364572
1	181250086	181304050	2	neutral	AA	100	somatic	0	0.406824271574287	0.365064389142829
1	196770732	196827694	1	loss	A	-1	germline	1	0.000318615377548686	0.000241179577092687
1	204058870	204070862	2	neutral	AA	11.0151	germline	1	0.149111712632527	0.526096429602975
1	204094846	204121828	2	neutral	AA	100	somatic	0	0.0507420307723409	0.0331224345113322
1	206139482	206454272	2	neutral	AA	56.6274	somatic	0	0.0111120907066577	0.00434578643400918
1	220014226	220062194	2	neutral	AA	100	somatic	0	1.19942306814369e-05	5.63546101306489e-06
1	221279382	221336344	2	neutral	AA	21.8452	somatic	0	0.10264397124555	0.0951705595212549
1	223222086	223291040	2	neutral	AA	27.3271	somatic	0	1.89508250736758e-05	2.02112457847736e-05
1	224694104	224709094	2	neutral	AA	54.5679	germline	1	0.0375996677917186	0.137127261632929
1	228342670	228555528	3	gain	AAB	2.17174	somatic	0	1.07279055900065e-44	0
1	234563520	234584506	2	neutral	AA	100	somatic	0	0.566749618042246	0.573913593197455
1	234776378	234782374	6	gain	AAAABB	86.6856	germline	1	0.0143089022210405	0.0366356058733531
1	235178110	235363986	2	neutral	AA	22.1058	somatic	0	2.52310618725102e-17	5.44009282066327e-15
1	236095498	236098496	5	gain	AAABB	16.0785	germline	1	0.0832770472644381	0.270058550940435
1	236602160	236785038	2	neutral	AA	100	somatic	0	6.41729337353327e-06	1.21434595213854e-05
2	3177880	3183876	4	gain	-	-1	germline	1	0.0143119266400502	0.0366408601422376
2	23009650	23042628	2	neutral	AA	54.5678	somatic	0	0.00207376462053176	0.000473724682970134
2	24916378	25018310	2	neutral	AA	100	somatic	0	6.73567797356389e-06	6.83707525350741e-06
2	37480996	37483994	1	loss	A	-1	somatic	0	0.126240868223586	0.338154472290335
2	42163872	42175864	2	neutral	AA	100	somatic	0	0.344248796095975	0.652551025904982
2	43273132	43297116	2	neutral	AA	36.3786	somatic	0	0.769025382542833	0.878915247401552
2	46331092	46343084	2	neutral	AA	100	somatic	0	0.0181499156875045	0.0629439689211709
2	52521962	52557938	1	loss	A	-1	germline	1	9.01735132005105e-08	5.10608810788682e-09
2	54200842	54224826	2	neutral	AA	100	somatic	0	0.185095293698562	0.251255266836879
2	61545942	61560932	2	neutral	AA	36.3943	somatic	0	0.000986484540472356	0.000553144469450761
2	65383382	65482316	2	neutral	AA	65.7299	somatic	0	0.00278457554628287	0.00180492140340338
2	68423354	68609230	2	neutral	AA	10.6651	somatic	0	0.999235247802123	0.186610936759624
2	74143538	74230480	2	neutral	AA	60.8848	somatic	0	5.70316961825327e-06	4.20042053606018e-05
2	74326416	74563258	2	neutral	AA	62.0534	somatic	0	0.934821482283174	0.399956368721894
2	76565922	76586908	2	neutral	AA	54.5678	somatic	0	0.960880104049024	0.83491794685246
2	88911686	88929674	2	neutral	AA	18.2951	somatic	0	0.380253062694108	0.707429675725343
2	89772112	89808088	4	gain	AABB	5.24321	somatic	0	3.13453049003648e-09	5.96651505979651e-10
2	89811086	89826076	5	gain	AAAAA	1.81108	germline	1	0.000107610899802546	9.08639062606742e-05
2	89826076	89841066	30	gain	AAAAAAAAAAAAAAAAAAAABBBBBBBBBB	9.19822	germline	1	0.000107520980578707	9.08074560401761e-05
2	89841066	89850060	4	gain	AABB	12.3154	germline	1	0.00270133246595517	0.00495967321081425
2	91412018	91415016	5	gain	-	-1	germline	1	0.0832814702719117	0.270066232429696
2	109199152	109202150	13	gain	AAAAAAAAAAAAB	100	germline	1	0.0832667276536607	0.270040628085712
2	111150850	111231796	2	neutral	AA	54.8425	somatic	0	0.00117048637775802	0.00666395195649017
2	114937324	114943320	2	neutral	AA	54.5678	somatic	0	0.608789957293242	0.764726917126086
2	115464972	115470968	2	neutral	AA	54.5678	somatic	0	0.383430299943491	0.805369845953594
2	117161840	117362706	2	neutral	AA	100	somatic	0	0.000430436886115361	0.00708674839008427
2	125043582	125052576	2	neutral	AA	100	somatic	0	0.499676334116193	0.756648631495736
2	130317064	130332054	2	neutral	AA	54.5678	somatic	0	0.365133772601408	0.507664807005065
2	135053904	136022258	2	neutral	AA	35.8843	somatic	0	1.62800297145677e-27	0
2	136022258	136034250	2	neutral	AA	54.5679	germline	1	0.664962119223144	0.668870593684983
2	136630852	136639846	2	neutral	AA	100	somatic	0	0.327228549519829	0.56538361373001
2	137698140	137824056	2	neutral	AA	35.3646	somatic	0	0.000355349161344428	3.17518564495467e-05
2	138237780	138297740	2	neutral	AA	27.2936	germline	1	0.979693861431978	0.716796221961114
2	147096870	147357696	2	neutral	AA	18.0041	somatic	0	8.13719521836286e-07	1.52398649441166e-05
2	150328714	150385676	2	neutral	AA	36.3786	somatic	0	0.00310902433962646	0.0172329454386093
2	155239438	155260424	2	neutral	AA	54.5678	somatic	0	0.699185467389493	0.743840062795565
2	157469950	157487938	2	neutral	AA	36.3786	somatic	0	0.0697048050825646	0.237124655673164
2	163693798	163699794	2	neutral	AA	100	somatic	0	0.113694513500374	0.221251467017537
2	167932970	167959952	2	neutral	AA	100	somatic	0	0.443417393064309	0.562737239140043
2	177157816	177277736	2	neutral	AA	30.7303	somatic	0	0.00345229412791829	0.0176728958855973
2	180923304	181097188	2	neutral	AA	100	somatic	0	0.00897998691013704	0.0830973212138518
2	183597520	183663476	2	neutral	AA	100	somatic	0	0.729802402069495	0.915818137227432
2	185015574	185027566	2	neutral	AA	100	somatic	0	0.211181021103599	0.39902608423511
2	186253748	186295720	2	neutral	AA	100	somatic	0	0.202284367981787	0.335797461888538
2	189104846	189116838	2	neutral	AA	100	somatic	0	0.659358638897482	0.540642536096804
2	189581528	189629496	2	neutral	AA	100	somatic	0	0.0485374756435437	0.142603741346732
2	192033892	192057876	2	neutral	AA	100	somatic	0	0.0414304312256618	0.0964720302429869
2	194690120	194702112	2	neutral	AA	100	somatic	0	0.211054818320075	0.523311371686555
2	194705110	194864004	1	loss	A	-1	germline	1	4.6124647538286e-29	0
2	194864004	194890986	2	neutral	AA	100	somatic	0	0.344291071542523	0.227013792318245
2	197745082	197787054	2	neutral	AA	100	somatic	0	0.382915967473861	0.170650643123884
2	197787054	197897980	2	neutral	AA	70.6469	somatic	0	0.015566276461118	0.0634477866072571
2	198683456	198713436	2	neutral	AA	27.4279	germline	1	0.149659848832148	0.301019821496511
2	198833356	199837686	2	neutral	AA	24.5429	somatic	0	7.43435694686058e-09	2.48056125751184e-07
2	202182122	202766732	2	neutral	AA	21.6602	germline	1	3.32200532518041e-52	0
2	202937618	202946612	1	loss	A	-1	somatic	0	0.0111437258523405	0.0186341898498893
2	202946612	203210436	2	neutral	AA	43.8296	somatic	0	1.01404332861935e-22	0
2	213580518	213595508	2	neutral	AA	54.6057	somatic	0	0.170445054522713	0.144981136269635
2	214324022	214339012	2	neutral	AA	100	somatic	0	0.756320680073166	0.589482353247888
2	214848672	214953602	2	neutral	AA	92.746	somatic	0	0.270863143997115	0.519824895196643
2	221777050	221786044	2	neutral	AA	54.5678	somatic	0	0.209715371188477	0.242496774064738
2	221938942	221947936	2	neutral	AA	54.5678	somatic	0	0.439970436609544	0.874714209950595
2	225593504	225626482	2	neutral	AA	54.5742	somatic	0	0.103911106150776	0.215040608155577
2	230558192	230564188	2	neutral	AA	100	somatic	0	0.268716746170511	0.525068640274188
2	231601496	231607492	2	neutral	AA	100	somatic	0	0.698567972288072	0.911868022389097
2	234386638	234404626	2	neutral	AA	51.0271	somatic	0	0.616743387436596	0.619301332234837
3	4425048	4437040	2	neutral	AA	54.5678	somatic	0	0.367993492880041	0.738794158126052
3	33682530	33763476	2	neutral	AA	18.1929	somatic	0	0.00391283421435929	0.00864489954030534
3	39393720	39423700	2	neutral	AA	36.3978	somatic	0	0.723547535804316	0.217693093946664
3	57006970	57840414	2	neutral	AA	71.4911	somatic	0	3.49146692716268e-34	0
3	60829420	60982318	2	neutral	AA	100	somatic	0	0.0474425531310627	0.032548319078249
3	61491978	61506968	1	loss	A	-1	germline	1	0.00025435424669722	0.000245425523391907
3	64606900	64633882	2	neutral	AA	100	somatic	0	0.00161982521965979	0.00974274447826928
3	68690176	68699170	0	loss	-	-1	germline	1	0.0143102980366736	0.0366419110751305
3	75141872	75558594	2	neutral	AA	19.6317	somatic	0	0.000943880132598419	0.0207357176272641
3	75669520	75774450	3	gain	AAB	0.408911	germline	1	6.1155999878413e-05	8.16040526313566e-05
3	86090568	86546264	2	neutral	AA	12.643	germline	1	0.0012480482112211	0.0059681732750938
3	88018282	88165184	2	neutral	AA	32.2843	somatic	0	0.218402591587319	0.252805702446887
3	88980640	89079574	2	neutral	AA	20.2759	somatic	0	0.872017337231654	0.367773672892241
3	90272778	93795428	2	neutral	AA	4.24267	somatic	0	8.62219075276104e-17	1.56541446472147e-14
3	94766780	95045594	2	neutral	AA	62.5268	somatic	0	0.0018507812023429	0.00555791623771873
3	96454654	96460650	2	neutral	AA	100	somatic	0	0.242810398190091	0.378361518296652
3	99755452	99788430	2	neutral	AA	100	somatic	0	0.565964997429459	0.51128021585566
3	102441660	102684498	2	neutral	AA	23.1261	somatic	0	0.000213137782674308	0.000390612662520384
3	113615206	113630196	2	neutral	AA	100	somatic	0	0.905396073950855	0.993573155562509
3	123448646	123475628	2	neutral	AA	36.3786	somatic	0	0.920641460747405	0.879554477679472
3	124054242	124123196	2	neutral	AA	100	somatic	0	0.000279228481421141	0.00164313708824759
3	124369032	124381024	2	neutral	AA	54.5678	somatic	0	0.377357576213423	0.843167069944633
3	128683154	128695146	3	gain	AAB	9.10623	germline	1	0.000532757244294267	0.000671759657462578
3	138486614	138498606	2	neutral	AA	100	somatic	0	0.657983384199101	0.5759278395631
3	139344042	139433982	2	neutral	AA	36.3803	somatic	0	0.0838732036465761	0.101283601978038
3	141478618	141586546	2	neutral	AA	100	somatic	0	0.0434885641311611	0.0404874296483511
3	149923984	149968954	2	neutral	AA	100	somatic	0	0.329503729431457	0.137028937330477
3	157176146	157314054	2	neutral	AA	100	somatic	0	0.531982536724728	0.600134316404485
3	162794398	162908322	1	loss	A	-1	germline	1	3.4883469381688e-23	0
3	181334030	181648820	2	neutral	AA	100	somatic	0	0.358016451019901	0.219040863675034
3	189053880	189122834	2	neutral	AA	30.9067	somatic	0	0.15802489132003	0.207563554669364
3	192768402	192870334	2	neutral	AA	27.3658	germline	1	0.546253373982203	0.747639992244595
3	197034556	197142484	2	neutral	AA	9.07714	somatic	0	0.00367140645661722	0.0084792745844311
4	125916	134910	1	loss	A	-1	germline	1	0.0168628415013507	0.0440879576680571
4	6895400	6898398	0	loss	-	-1	germline	1	0.0832652535081175	0.27003806774878
4	31814776	31817774	0	loss	-	-1	germline	1	0.083268938911616	0.270044468624346
4	40293120	40296118	4	gain	-	-1	germline	1	0.0832881051399215	0.270077754962622
4	43450014	43453012	0	loss	-	-1	somatic	0	0.0832969522966555	0.270093118898065
4	45023964	45026962	0	loss	-	-1	germline	1	0.0832836818470077	0.270070073234137
4	49089252	49092250	21	gain	-	-1	somatic	0	0.0832659905782464	0.270039347915028
4	49146214	49155208	70	gain	-	-1	somatic	0	0.00269987019794468	0.00495761092624225
4	49652876	49655874	15	gain	-	-1	somatic	0	0.0832667276536607	0.270040628085712
4	60463664	60466662	0	loss	-	-1	germline	1	0.0832881051399215	0.270077754962626
4	63200838	63203836	0	loss	-	-1	germline	1	0.0832704131100136	0.270047029005583
4	68519290	68621222	1	loss	A	-1	germline	1	2.67670807729498e-14	0
4	70617890	70623886	1	loss	A	-1	somatic	0	0.020924198014488	0.0570955206393111
4	74560260	74563258	0	loss	-	-1	germline	1	0.0832836818470077	0.270070073234137
4	89181506	89187502	4	gain	-	-1	germline	1	0.0143140207989166	0.0366457647213712
4	106135196	106141192	1	loss	A	-1	germline	1	0.0195830741354956	0.0441336696639549
4	131021594	131438316	3	gain	-	-1	somatic	0	4.43517397487157e-86	0
4	134511266	134517262	1	loss	A	-1	germline	1	0.025164411789589	0.070735304465351
4	162470614	162476610	1	loss	A	-1	somatic	0	0.0209138119792038	0.0568309885981373
4	185519238	185525234	1	loss	A	-1	somatic	0	0.0215474817116495	0.0585339331525426
4	189269736	189278730	1	loss	A	-1	somatic	0	0.00753747537187969	0.00970525222582397
5	45371732	45377728	1	loss	A	-1	germline	1	0.0201403310669775	0.054643766398113
5	58026290	58038282	1	loss	A	-1	germline	1	0.0015842453886718	0.00157985361918767
5	84651528	84660522	1	loss	A	-1	germline	1	0.0151777171254421	0.0392540375923477
5	86918016	86924012	1	loss	A	-1	germline	1	0.0199228175193901	0.0539556498683773
5	92341398	92347394	1	loss	A	-1	germline	1	0.0184984856917906	0.0494850486484159
5	113822068	113837058	1	loss	A	-1	germline	1	0.000353795042642091	0.000238906269028671
5	139499938	139631850	2	neutral	AA	100	germline	1	2.29451984619899e-13	5.4900528567714e-13
5	140843042	140861030	1	loss	A	-1	germline	1	0.000303655679807069	0.000275552749362085
5	141973288	141988278	2	neutral	AA	54.5678	somatic	0	0.599022084067678	0.48909853758639
5	143577218	143589210	2	neutral	AA	54.5678	germline	1	0.228425396495901	0.265927723081005
5	144998270	145010262	2	neutral	AA	38.8891	somatic	0	0.459759921811641	0.491933184934916
5	145660828	145663826	2	neutral	AA	100	somatic	0	0.661898872328089	0.827779315858229
5	146925984	147147836	2	neutral	AA	48.9577	somatic	0	0.114931570310545	0.0286246539452114
5	147399668	147456630	2	neutral	AA	100	somatic	0	0.000160106245709917	0.000129914935385833
5	147564558	147567556	2	neutral	AA	100	somatic	0	0.412621323564542	0.649917938941237
5	150517588	150520586	2	neutral	AA	100	somatic	0	0.340288814012291	0.584846898859803
5	153146834	153149832	2	neutral	AA	100	somatic	0	0.45767932387631	0.687192976577243
5	160905658	160908656	2	neutral	AA	100	somatic	0	0.234604995594358	0.475868574992759
5	163079208	163082206	2	neutral	AA	100	somatic	0	0.855005412460447	0.920038824405125
5	164236436	164242432	2	neutral	AA	12.1263	somatic	0	0.197249412431306	0.492772338703555
5	164590200	164599194	2	neutral	AA	100	somatic	0	0.490763079399056	0.854172583627047
5	164740100	164743098	2	neutral	AA	100	somatic	0	0.898474929757845	0.935429591424488
5	166484936	166487934	2	neutral	AA	100	somatic	0	0.990230782803747	0.961645528281622
5	167153490	167177474	2	neutral	AA	36.3853	somatic	0	0.454596610386087	0.922453718898107
5	167225442	167291398	2	neutral	AA	43.5649	somatic	0	0.366009618708395	0.0878833410675794
5	169980604	170004588	2	neutral	AA	54.5684	somatic	0	0.000692271722026805	0.000627313362373316
5	171635500	171665480	2	neutral	AA	54.5706	somatic	0	0.00449759386959915	0.0227583123940264
5	171833368	171836366	2	neutral	AA	100	somatic	0	0.601364443921087	0.790806187170167
5	172801722	172807718	2	neutral	AA	54.5873	somatic	0	0.0852533314159763	0.131417872648003
5	173116512	173200456	2	neutral	AA	100	somatic	0	4.45651894282821e-06	2.894452415525e-06
5	173901988	173913980	2	neutral	AA	56.584	somatic	0	0.298457767516854	0.600568538877798
5	174627504	174633500	2	neutral	AA	54.5851	somatic	0	0.0716460019687643	0.127466350259479
5	176135498	176153486	2	neutral	AA	54.5873	somatic	0	0.536392596753164	0.375384846922731
5	178584864	178587862	9	gain	AAAAAABBB	19.5575	germline	1	0.083268938911616	0.270044468624341
5	178680800	178686796	0	loss	-	-1	germline	1	0.0143382978453714	0.0367243161413221
5	179208448	179247422	2	neutral	AA	18.2877	somatic	0	0.000446909246973974	0.00664759434317197
5	179673138	179694124	2	neutral	AA	54.5693	somatic	0	0.000994464716660131	0.000666653719037069
5	180506582	180575536	2	neutral	AA	21.9644	germline	1	0.00514474333780748	0.0238019739395051
5	180950286	181001252	1	loss	A	-1	germline	1	2.55996485406974e-11	1.26010313294955e-13
6	296802	380746	3	gain	AAB	0.794058	germline	1	4.76074492092297e-18	0
6	7078278	7096266	2	neutral	AA	36.3786	somatic	0	0.117126305549453	0.263104392246541
6	27188862	27257816	2	neutral	AA	23.3968	somatic	0	0.00114806268893916	0.0027169264864918
6	32492324	32666208	1	loss	A	-1	germline	1	9.74234151468811e-14	0
6	34848752	34887726	2	neutral	AA	100	somatic	0	0.144304446657171	0.136025993263981
6	44349414	44367402	2	neutral	AA	38.466	somatic	0	0.917564347437121	0.73076749898141
6	49619898	49667866	2	neutral	AA	54.5678	somatic	0	0.592592850556619	0.44490671633818
6	60229820	60241812	3	gain	-	-1	germline	1	0.000534239042148793	0.000673882125356573
6	61842744	61962664	2	neutral	AA	100	somatic	0	0.777738753635557	0.893502882707326
6	72758462	72773452	2	neutral	AA	54.5678	somatic	0	0.340596621789184	0.411992391717483
6	85943666	85991634	2	neutral	AA	100	somatic	0	0.463826270023182	0.807427187725018
6	107984962	107996954	2	neutral	AA	100	germline	1	0.0769509455090253	0.0583555225251995
6	114214806	114229796	2	neutral	AA	54.5678	somatic	0	0.888845857937768	0.90697529922565
6	118645850	118648848	4	gain	AAAA	10.9136	germline	1	0.0832836818470077	0.270070073234133
6	118648848	118693818	2	neutral	AA	54.5679	somatic	0	0.0591300176233537	0.0316891281188684
6	123097880	123193816	2	neutral	AA	100	somatic	0	0.124750360520501	0.330241539409761
6	124216134	124231124	2	neutral	AA	100	germline	1	0.358705354220346	0.42134444008106
6	129273760	129306738	2	neutral	AA	55.0709	somatic	0	0.140184665687055	0.211216409217494
6	131744112	132025924	2	neutral	AA	13.6252	somatic	0	0.225509047534673	0.270240877855606
6	137605202	137635182	2	neutral	AA	100	somatic	0	0.906972694868785	0.579520948720686
6	154807726	154888672	2	neutral	AA	100	somatic	0	0.0676868265535653	0.116327906915304
6	157308058	157311056	9	gain	AAAAAABBB	5.26244	germline	1	0.083268938911616	0.270044468624341
6	157314054	157317052	5	gain	AAABB	8.66015	germline	1	0.0832814702719117	0.270066232429696
6	160533906	160692800	2	neutral	AA	21.422	somatic	0	3.64194117855925e-06	0.000253574188991856
6	164776076	164782072	1	loss	A	-1	germline	1	0.0182052370007968	0.0447054282259565
6	166610852	166697794	2	neutral	AA	67.1953	somatic	0	6.66011306972633e-08	6.95078717916076e-07
6	167063550	167069546	2	neutral	AA	35.8133	somatic	0	0.301008990388818	0.310643896762963
7	902398	1019320	2	neutral	AA	45.2479	somatic	0	0.694933148774131	0.537285327469145
7	35280464	35286460	2	neutral	AA	54.5678	somatic	0	0.38129874332617	0.395069378822563
7	41552280	41612240	2	neutral	AA	100	somatic	0	0.170694535957884	0.111814505456225
7	44772132	44907042	2	neutral	AA	13.6962	germline	1	1.1037919759312e-10	4.20913169874026e-08
7	50759138	50774128	2	neutral	AA	37.5727	somatic	0	0.00878334997852217	0.00859941740457215
7	50980990	51022962	2	neutral	AA	36.3787	somatic	0	0.420898536098408	0.571632294477391
7	57483652	57486650	2	neutral	AA	15.5957	somatic	0	0.367044016757437	0.609712135153258
7	57486650	57498642	3	gain	AAB	1.69726	germline	1	0.000533405315494555	0.000673109592508325
7	57498642	58035284	2	neutral	AA	1.21433	germline	1	0.00138956528337102	0.00119270687226092
7	61096242	61959666	2	neutral	AA	22.4763	somatic	0	0.05413817111075	0.0445246469955267
7	61959666	62454336	3	gain	AAB	0.305948	somatic	0	8.80856686738182e-14	9.32587340685131e-15
7	62685182	62703170	1	loss	A	-1	germline	1	5.36274747373806e-05	4.26598235239162e-05
7	64537946	64672856	2	neutral	AA	21.9213	somatic	0	0.752085490942787	0.586197127126869
7	70917690	71271454	2	neutral	AA	41.023	somatic	0	1.93379430948358e-07	8.77934104304146e-08
7	78193836	78205828	2	neutral	AA	100	somatic	0	0.877753912319629	0.982552037694629
7	78907360	79012290	2	neutral	AA	100	somatic	0	0.0651941092844682	0.266783529432998
7	90497628	90506622	2	neutral	AA	54.5678	somatic	0	0.809822757789716	0.976717654722299
7	91531938	92851058	2	neutral	AA	100	somatic	0	0.0489473799053689	0.00211681638002947
7	98016612	98061582	2	neutral	AA	19.566	somatic	0	1.04236949837018e-07	1.73866183672544e-08
7	100951654	100957650	4	gain	AABB	2.06291	germline	1	0.0143129736856982	0.0366422613919537
7	100957650	100960648	15	gain	AAAAAAAAABBBBBB	9.56036	germline	1	0.0832667276536607	0.270040628085712
7	100960648	100969642	4	gain	AABB	0.363442	germline	1	0.00270317722665582	0.00496422724253398
7	101260448	101284432	2	neutral	AA	3.81187	germline	1	0.00260573121807596	0.00412844142289281
7	102042926	102072906	2	neutral	AA	11.1732	germline	1	0.058540234940059	0.0954068190365207
7	103011280	103065244	2	neutral	AA	48.6601	somatic	0	0.0453024683010415	0.0228363065305347
7	112589890	112646852	2	neutral	AA	54.5707	somatic	0	0.976721710035561	0.702086695948679
7	122381358	128272428	2	neutral	AA	3.78004	somatic	0	6.20192452353862e-40	0
7	129618530	129744446	2	neutral	AA	47.2193	somatic	0	2.77367429127861e-06	8.97982033476463e-06
7	132466630	132475624	2	neutral	AA	54.5678	somatic	0	0.106616688177939	0.174678916536931
7	138297740	138345708	2	neutral	AA	64.4927	somatic	0	0.000391419781914796	0.00124892892700867
7	143325386	143355366	2	neutral	AA	27.3798	somatic	0	0.562866488807213	0.626224579570454
7	149030580	149153498	2	neutral	AA	100	somatic	0	1.94064568343546e-14	4.89608353859694e-14
7	152394336	152418320	4	gain	AAAB	2.59289	germline	1	0.499535104204306	0.0995825465340729
7	155260424	155353362	2	neutral	AA	3.1623	germline	1	4.24230562121826e-09	2.28914557309778e-08
7	157577878	157631842	2	neutral	AA	24.3009	somatic	0	3.70936130374946e-06	4.33357050267924e-05
8	6109924	6115920	1	loss	A	-1	germline	1	0.0203835415726914	0.0554106117940302
8	32822104	32834096	0	loss	-	-1	germline	1	0.0143085532858982	0.0366366566743898
8	40916704	40922700	0	loss	-	-1	germline	1	0.0143087859084924	0.0366377075017954
8	42331760	42337756	1	loss	A	-1	germline	1	0.0143262421137251	0.0366752042601985
8	43237156	43240154	9	gain	-	-1	germline	1	0.083268938911616	0.270044468624341
8	43240154	43243152	5	gain	-	-1	germline	1	0.0832814702719117	0.270066232429696
8	43776796	43779794	4	gain	-	-1	germline	1	0.0832888423739084	0.270079035266209
8	88932672	89049594	2	neutral	AA	21.9294	somatic	0	0.0171674775181059	0.00684003864180005
8	90545596	90611552	2	neutral	AA	54.5678	somatic	0	0.501078294467318	0.819957576447657
8	98301422	98346392	2	neutral	AA	36.385	somatic	0	0.142149782374416	0.19546463307908
8	107370372	107412344	2	neutral	AA	27.9305	somatic	0	0.157024981068527	0.275812517726413
8	131777090	132094878	2	neutral	AA	78.356	somatic	0	8.46589277069356e-14	1.12557774212263e-09
8	144122854	144125852	4	gain	AAAB	100	germline	1	0.0832822074583244	0.270067512693411
8	144125852	144314726	2	neutral	AA	9.63733	somatic	0	0.0276486882601896	0.0125763179150017
9	4988672	5000664	2	neutral	AA	100	somatic	0	0.49461617343307	0.690711509124895
9	19918712	20005654	2	neutral	AA	100	somatic	0	0.0516852673895377	0.0150814562086339
9	22496992	22502988	1	loss	A	-1	germline	1	0.0204892849608629	0.0510567482715838
9	23363414	23378404	1	loss	A	-1	germline	1	0.000239919357180683	0.00022715095179382
9	29092592	29098588	1	loss	A	-1	germline	1	0.0268294355232392	0.0563569756878638
9	31149220	31188194	2	neutral	AA	100	somatic	0	0.14904213506171	0.26572694071909
9	40910708	40925698	5	gain	AAABB	1.17362	germline	1	0.00270105691086894	0.00495924646673995
9	40925698	40928696	5	gain	AAABB	1.75175	germline	1	0.0832777844191359	0.27005983117757
9	61668860	61674856	2	neutral	AA	9.09464	somatic	0	0.0869430097907853	0.146334319294236
9	80010624	80076580	2	neutral	AA	19.4007	somatic	0	0.0042163299219349	0.0103298844583879
9	80634208	80712156	2	neutral	AA	34.99	somatic	0	0.923584197873511	0.666332452393513
9	90905356	91058254	2	neutral	AA	100	somatic	0	3.44536989384523e-07	4.08166230292384e-05
9	105604550	105616542	2	neutral	AA	54.5678	somatic	0	0.693018883989052	0.880733796842886
9	127450976	127456972	2	neutral	AA	100	somatic	0	0.959424108801898	0.742784319257306
9	128590216	128674160	2	neutral	AA	21.9647	somatic	0	2.66357912630936e-08	1.79078980533376e-08
9	129429656	129438650	3	gain	AAB	0.43394	germline	1	0.00270402577873525	0.00496394250329435
9	130077224	130173160	2	neutral	AA	50.2984	somatic	0	0.00196002922376477	0.00547221688463817
9	132268762	132385684	2	neutral	AA	53.7346	somatic	0	0.000424422087253464	0.000742943554287279
9	134706136	134715130	2	neutral	AA	12.5519	somatic	0	0.449226456902368	0.531122377913706
9	137326388	137329386	4	gain	AAAB	26.7783	germline	1	0.0832822074583244	0.270067512693411
9	137500272	137536248	2	neutral	AA	40.9662	somatic	0	0.400646064186427	0.638480380483933
10	11854092	11863086	2	neutral	AA	54.5678	somatic	0	0.19821199607826	0.376942932161056
10	21246826	21258818	2	neutral	AA	54.568	somatic	0	0.104351779301145	0.235537713839273
10	26550288	26649222	2	neutral	AA	0.643038	somatic	0	0.405881889880067	0.494958761163054
10	26925038	27647556	2	neutral	AA	2.84948	somatic	0	6.28738885714047e-13	3.77475828372553e-15
10	31233164	31239160	2	neutral	AA	100	somatic	0	0.126851013172402	0.259146239531416
10	32408380	33010978	2	neutral	AA	68.6052	somatic	0	0.0224506683646392	0.001144287428966
10	38485326	38527298	2	neutral	AA	0.38887	somatic	0	9.26750241250168e-09	4.29173163674079e-09
10	38581262	38836092	2	neutral	AA	0.428948	somatic	0	1.0673858403874e-05	0.000207576701272139
10	41810108	41843086	2	neutral	AA	5.18848	somatic	0	0.0881799078599472	0.03388660468605
10	41858076	41915038	36	gain	AAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBB	7.10568	germline	1	2.20928267639388e-05	1.22901871736358e-05
10	42298782	42322766	2	neutral	AA	3.47742	somatic	0	1.70797955702267e-06	1.16953506368311e-06
10	43300114	43521966	2	neutral	AA	9.65426	somatic	0	7.09078154201987e-12	9.68691793445942e-12
10	46091252	46103244	2	neutral	AA	27.2842	germline	1	0.614413593024737	0.893527757026943
10	46169200	46331092	3	gain	AAB	0.449343	germline	1	2.4152724465785e-21	0
10	46513970	46558940	6	gain	AAAABB	1.32226	germline	1	4.2446606315738e-10	1.0233147662575e-11
10	50210504	50246480	2	neutral	AA	36.3934	somatic	0	0.670983623734379	0.899367797405645
10	51310770	51331756	2	neutral	AA	100	somatic	0	0.980208003989383	0.500716963654438
10	66396706	66411696	2	neutral	AA	100	germline	1	0.31706733616504	0.42120597324302
10	68366392	68381382	1	loss	A	-1	somatic	0	0.00118637463527979	0.00174514261102254
10	71292440	71313426	2	neutral	AA	27.2841	somatic	0	0.190896410324728	0.448630013077765
10	74185510	74296436	2	neutral	AA	25.0134	somatic	0	3.97969340051416e-08	5.02299091209579e-10
10	74329414	74461326	2	neutral	AA	35.0551	somatic	0	0.00154883846741935	0.00206587666266878
10	75066922	75102898	2	neutral	AA	54.5678	somatic	0	0.152964081968713	0.112484318453977
10	89919014	89928008	2	neutral	AA	54.5678	somatic	0	0.115604098724887	0.339474662575521
10	93831404	93849392	2	neutral	AA	72.3092	somatic	0	0.624531233564912	0.511485565272118
10	101692160	102057916	2	neutral	AA	34.0071	somatic	0	5.33369268410508e-17	0
10	103865710	103922672	2	neutral	AA	27.284	somatic	0	0.138722849051835	0.0732627533226932
10	109720804	109774768	2	neutral	AA	27.2843	germline	1	0.000951538799049352	0.00530855770488969
10	128464300	128467298	4	gain	AABB	24.2863	germline	1	0.0832822074583244	0.270067512693411
10	128985952	129027924	2	neutral	AA	54.5678	somatic	0	0.00532719117102425	0.0255747772650641
10	132424658	132451640	2	neutral	AA	10.2002	germline	1	0.426286026986652	0.821331139297698
11	3654562	3657560	3	gain	-	-1	germline	1	0.0832940031598302	0.270087997515364
11	18923376	18941364	3	gain	-	-1	germline	1	2.21788697662143e-05	1.23474224190678e-05
11	54755472	54776458	1	loss	A	-1	germline	1	4.66291069071791e-05	4.04041977193348e-05
11	55184186	55217164	1	loss	A	-1	germline	1	2.21960161732572e-06	1.36026955832591e-06
11	61114230	61162198	2	neutral	AA	41.1171	somatic	0	0.0730198369794464	0.299881601592889
11	65961996	65970990	2	neutral	AA	49.826	somatic	0	0.65407646785333	0.96645229766155
11	71913026	72110894	2	neutral	AA	77.6694	somatic	0	0.00060522213757858	0.000599975146453491
11	78784442	78805428	2	neutral	AA	27.8026	somatic	0	0.000873054846949175	0.00103339404320679
11	83323414	83425346	2	neutral	AA	14.0042	somatic	0	0.846177899479612	0.910741129559567
11	86177510	86189502	1	loss	A	-1	germline	1	0.00153886283087976	0.00159877077274961
11	88021280	88087236	2	neutral	AA	23.9506	somatic	0	0.0155768755498645	0.0539242050279537
11	92782104	92788100	2	neutral	AA	100	somatic	0	0.177860327504636	0.18548342617344
11	104396356	104399354	0	loss	-	-1	germline	1	0.083282944650023	0.270068792961561
11	104402352	104486296	2	neutral	AA	66.4851	somatic	0	0.556668425069578	0.601411977021777
11	104489294	104501286	2	neutral	AA	100	somatic	0	0.172161449583639	0.476568866245723
11	104789094	104792092	1	loss	A	-1	somatic	0	0.1241573832278	0.335099786727195
11	107367374	107373370	1	loss	A	-1	germline	1	0.0165519716937015	0.0406127261316044
11	111585560	111594554	2	neutral	AA	100	somatic	0	0.112718646890274	0.103872494008879
11	118891686	119011606	2	neutral	AA	35.6324	somatic	0	0.000344221332857368	0.000684683123725605
11	122864036	122876028	2	neutral	AA	27.2991	somatic	0	0.463958071006854	0.79434589813362
11	127319064	127346046	2	neutral	AA	33.312	somatic	0	0.213295583857694	0.615275658322308
11	133312066	133363032	2	neutral	AA	7.63457	somatic	0	0.00218065004012474	0.00262003027758417
12	326782	458694	2	neutral	AA	33.048	somatic	0	1.22717958877067e-06	2.25923188601485e-06
12	2254496	2257494	6	gain	AAAABB	7.46636	germline	1	0.0832763101150261	0.27005727070773
12	14309454	14318448	2	neutral	AA	100	somatic	0	0.122429497043231	0.265163081678249
12	19786800	19792796	2	neutral	AA	100	somatic	0	0.156648893614768	0.391051398764189
12	29476336	29491326	2	neutral	AA	100	somatic	0	0.2731459184681	0.198676744803859
12	31880732	31886728	2	neutral	AA	54.5678	somatic	0	0.85488780867218	0.987111711808205
12	34677866	37615906	2	neutral	AA	2.45331	somatic	0	1.38133797118385e-15	2.16493489801906e-14
12	37615906	37624900	0	loss	-	-1	germline	1	0.0143097164322304	0.0366398092357193
12	37624900	37753814	2	neutral	AA	0.818155	germline	1	0.00192658737848807	0.00500341974700425
12	38278464	38347418	2	neutral	AA	15.5908	somatic	0	0.285446629891976	0.279075939756935
12	38791122	38869070	2	neutral	AA	21.8563	somatic	0	0.310706991922867	0.484021729745109
12	41951014	42088922	2	neutral	AA	2.72134	somatic	0	0.49901953678667	0.638105709037578
12	54734486	54836418	2	neutral	AA	24.9654	somatic	0	0.0755746248461675	0.0214494900623921
12	60946342	60967328	2	neutral	AA	54.8585	somatic	0	0.193299652690187	0.123210019876659
12	64055268	64070258	2	neutral	AA	36.3892	somatic	0	0.652322520229115	0.495578888028149
12	66033948	66057932	2	neutral	AA	28.2969	somatic	0	0.845805372430731	0.988139862885137
12	67523954	67535946	2	neutral	AA	100	somatic	0	0.754244646777288	0.663080838075264
12	77228480	77357394	2	neutral	AA	18.2951	somatic	0	0.045797597058487	0.149611813794999
12	78946334	79003296	2	neutral	AA	27.2907	somatic	0	0.047445261321562	0.14988735342906
12	82343068	82409024	2	neutral	AA	18.1897	somatic	0	0.00511516437606303	0.00731502789258898
12	91178174	91250126	2	neutral	AA	100	somatic	0	0.0814502026687185	0.0495472139887415
12	104168508	104222472	2	neutral	AA	36.3786	somatic	0	4.35582969023839e-05	1.24432627260918e-05
12	105790426	105802418	2	neutral	AA	54.5678	somatic	0	0.457996715298132	0.967645261677421
12	121964636	121985622	2	neutral	AA	36.3786	germline	1	0.0297335840717066	0.0224797125886396
12	121985622	122033590	2	neutral	AA	100	somatic	0	0.0290394268541868	0.0914442469973172
12	129123860	129156838	2	neutral	AA	20.1253	somatic	0	0.266993170122642	0.226568351267288
12	131465298	131480288	2	neutral	AA	15.5951	somatic	0	0.0115855867929303	0.0576867748010692
13	22020310	22023308	0	loss	-	-1	germline	1	0.0832667276536607	0.270040628085716
13	26361414	26367410	2	neutral	AA	100	somatic	0	0.785738849165892	0.617369542233339
13	26475338	26478336	0	loss	-	-1	germline	1	0.083286630687806	0.270075194368743
13	27881400	27941360	2	neutral	AA	18.2921	somatic	0	0.0782324175692796	0.0577734877765428
13	29059614	29152552	2	neutral	AA	36.3786	germline	1	0.00859164749862471	0.00451463604090052
13	31655882	31706848	2	neutral	AA	27.2936	somatic	0	0.844742860513618	0.878641970986624
13	35595254	35616240	2	neutral	AA	100	somatic	0	0.430344787834005	0.489229583009689
13	37498984	37510976	1	loss	A	-1	germline	1	0.00108003752998433	0.00116104531882311
13	38233494	38251482	2	neutral	AA	54.5678	somatic	0	0.981229834061116	0.945796819949547
13	38482328	38485326	0	loss	-	-1	germline	1	0.0832873679112207	0.270076474663469
13	44244484	44268468	2	neutral	AA	54.5678	germline	1	0.00761716738865939	0.0272935272352707
13	45617568	45653544	2	neutral	AA	36.3786	somatic	0	0.462840593956988	0.752885941752128
13	45932358	45938354	2	neutral	AA	100	somatic	0	0.849816692562058	0.990555762300565
13	48123896	48150878	2	neutral	AA	36.3786	somatic	0	0.17785819374533	0.0943185575262826
13	50708172	50720164	3	gain	AAB	100	germline	1	0.000533351965459709	0.000673122461249509
13	60685516	60703504	2	neutral	AA	36.3786	somatic	0	0.921302921592504	0.98127321332867
13	63026954	63059932	3	gain	AAB	0.419503	germline	1	2.26479654855738e-07	1.98102530635236e-06
13	63059932	63068926	4	gain	AABB	2.41444	germline	1	0.0027017352465187	0.0049600288565893
13	63494642	63524622	2	neutral	AA	36.3786	germline	1	0.0686860724736963	0.178372136003818
13	63650538	63662530	1	loss	A	-1	germline	1	0.00113784592128707	0.00128921434108664
13	65872056	66048938	2	neutral	AA	73.7573	somatic	0	0.145401693852549	0.199207741505038
13	68210496	68306432	2	neutral	AA	20.0508	somatic	0	0.00465477878508288	0.0212692362268749
13	68528284	68537278	2	neutral	AA	100	somatic	0	0.211902865002828	0.466531687907326
13	75012958	75060926	2	neutral	AA	21.867	somatic	0	0.330302500284824	0.0752035318751723
13	77504296	77519286	2	neutral	AA	54.5678	somatic	0	0.608507908630523	0.815869482018112
13	88815750	88914684	2	neutral	AA	100	somatic	0	0.493578229151557	0.142135992402337
13	92035602	92104556	2	neutral	AA	32.6277	somatic	0	0.554848549158308	0.496226516796945
13	93828406	93852390	2	neutral	AA	54.5678	somatic	0	0.147304870116005	0.272804444728578
13	96919344	96991296	2	neutral	AA	22.4906	somatic	0	2.58702197088577e-05	9.2236123062972e-05
13	105595556	105631532	2	neutral	AA	36.3786	germline	1	0.0339166104581069	0.055460481405013
13	109022270	109025268	1	loss	A	-1	somatic	0	0.0836892017374028	0.270773611810775
13	111309744	111315740	2	neutral	AA	36.3786	somatic	0	0.111275341015364	0.233161708036529
13	113989956	114073900	2	neutral	AA	7.08089	germline	1	0.00150930923574868	0.01565585057439
14	0	16093264	3	gain	AAB	-1	somatic	0	NA	NA
14	16093264	16096262	4	gain	-	-1	germline	1	0.0832910541075861	0.270082876203552
14	16096262	18488666	3	gain	AAB	-1	somatic	0	NA	NA
14	18491664	18659552	3	gain	AAB	-1	somatic	0	NA	NA
14	18659552	18662550	4	gain	AABB	8.22172	germline	1	0.0832888423739084	0.270079035266209
14	18662550	18680538	3	gain	AAB	-1	somatic	0	NA	NA
14	18680538	18695528	2	neutral	AA	100	germline	1	0.0664880163440002	0.0812487134098895
14	18695528	19726840	3	gain	AAB	-1	somatic	0	NA	NA
14	19726840	19957686	3	gain	AAB	0.409205	germline	1	1.93746023276567e-24	0
14	19957686	20008652	2	neutral	AA	47.4888	somatic	0	0.982157414655574	0.819632132618968
14	21102922	21117912	2	neutral	AA	54.5679	somatic	0	0.423443771933362	0.904209254717607
14	34348086	34351084	0	loss	-	-1	germline	1	0.0832836818470077	0.270070073234137
14	34351084	34453016	2	neutral	AA	81.5509	somatic	0	0.000409876701616286	1.15043237134405e-05
14	38785126	38818104	2	neutral	AA	54.5678	somatic	0	0.344606725788232	0.3325042648174
14	40146218	40149216	0	loss	-	-1	germline	1	0.0832895796131814	0.270080315574231
14	44823098	44904044	2	neutral	AA	37.2672	somatic	0	0.60563318584335	0.713201697139072
14	44904044	44993984	2	neutral	AA	74.5815	somatic	0	0.000280662222811877	0.00157891979923908
14	49811770	49844748	2	neutral	AA	39.5931	somatic	0	0.00144348876553284	0.0112480484868176
14	63392710	63419692	2	neutral	AA	54.5785	somatic	0	0.180563391938467	0.168203436839068
14	65002636	65044608	2	neutral	AA	27.2937	somatic	0	0.0615624791403504	0.0202437879972194
14	69877384	69982314	2	neutral	AA	31.8655	somatic	0	1.94833934519237e-07	2.46701692827589e-05
14	85425012	85437004	2	neutral	AA	54.5678	somatic	0	0.11622425353819	0.298605698028478
14	90020946	90026942	2	neutral	AA	54.5678	somatic	0	0.382880965163524	0.55035701529399
14	104189494	104300420	2	neutral	AA	81.2213	germline	1	6.40888323364171e-07	4.7006609069089e-05
14	104792092	104807082	2	neutral	AA	15.2169	somatic	0	0.627516329813143	0.68606982193655
15	0	17079606	6	gain	-	-1	somatic	0	NA	NA
15	17079606	17082604	15	gain	-	-1	germline	1	0.0832667276536607	0.270040628085712
15	17082604	20671210	6	gain	-	-1	somatic	0	2.53544130928141e-10	6.20514750693246e-12
15	40739822	40754812	2	neutral	AA	54.5678	somatic	0	0.00924723181947922	0.00438318951861361
15	46882724	46912704	2	neutral	AA	36.3786	somatic	0	0.0908875730390349	0.137345863311814
15	64558932	64567926	2	neutral	AA	36.3798	somatic	0	0.0507653367945185	0.150865935551591
15	69421688	69430682	2	neutral	AA	54.5678	somatic	0	0.156590020592579	0.471020258309702
15	77867054	78058926	2	neutral	AA	100	somatic	0	0.0940531518135252	0.36588390741323
15	87280774	87325744	1	loss	A	-1	germline	1	5.62270592105426e-10	4.57534010678273e-12
15	90155856	90221812	2	neutral	AA	16.975	somatic	0	0.000629919839867638	0.00118847262206179
15	96991296	97036266	2	neutral	AA	100	somatic	0	0.0244963728965558	0.113503621483096
15	97234134	97288098	2	neutral	AA	100	somatic	0	0.80568912090219	0.776323071842187
16	1025316	1028314	4	gain	AAAA	4.93616	germline	1	0.0832822074583244	0.270067512693411
16	1364090	1430046	2	neutral	AA	100	somatic	0	0.404106886934815	0.314031983542637
16	3099932	3120918	2	neutral	AA	36.3786	somatic	0	0.177791342183183	0.161654801019524
16	5651230	5666220	2	neutral	AA	14.1755	somatic	0	0.975669444967021	0.969052875198424
16	12654558	12666550	2	neutral	AA	54.5678	somatic	0	0.449814842803065	0.366993178985292
16	13862752	13868748	2	neutral	AA	54.5678	somatic	0	0.609656976623209	0.554528275995343
16	21558618	21582602	3	gain	AAB	24.6005	germline	1	9.65681029846681e-07	2.255011279928e-07
16	22613914	22679870	4	gain	AABB	100	germline	1	2.07932247533772e-15	0
16	22679870	22697858	4	gain	AABB	3.59301	germline	1	2.21229722736095e-05	1.23018255449026e-05
16	24418710	24433700	2	neutral	AA	54.5678	somatic	0	0.139771366148633	0.140587827949061
16	25174206	25180202	2	neutral	AA	36.3787	somatic	0	0.0392649253995006	0.0750341129853367
16	25327104	25333100	1	loss	A	-1	germline	1	0.0154161107133995	0.0395976215741122
16	27590594	27605584	2	neutral	AA	54.5678	somatic	0	0.0125813800575475	0.00901854814597647
16	34063276	34066274	20	gain	AAAAAAAAAAAAABBBBBBB	29.3045	germline	1	0.0832659905782464	0.270039347915028
16	34069272	34084262	2	neutral	AA	5.5914	germline	1	0.170575536580234	0.542552727589804
16	34084262	34087260	13	gain	AAAAAAAABBBBB	20.3761	germline	1	0.0832667276536607	0.270040628085712
16	34087260	34096254	2	neutral	AA	13.9767	somatic	0	0.442932245057575	0.677240029080814
16	34096254	34099252	11	gain	AAAAAAABBBB	2.03397	germline	1	0.0832667276536607	0.270040628085712
16	34174202	34177200	4	gain	AABB	5.5966	germline	1	0.0832822074583244	0.270067512693411
16	34192190	34959678	2	neutral	AA	0.829221	somatic	0	9.98044481337617e-12	7.04392100203677e-12
16	35232496	35523302	3	gain	AAB	3.07208	somatic	0	1.20146322684801e-60	0
16	36122902	36125900	5	gain	-	-1	germline	1	0.0832792587443887	0.27006239166513
16	54404706	54410702	2	neutral	AA	54.5678	somatic	0	0.816997720331363	0.727285033797204
16	70288110	70423020	2	neutral	AA	46.4144	somatic	0	1.61425111423467e-11	3.19200221809979e-12
16	73600900	73663858	2	neutral	AA	15.796	somatic	0	0.0218219338840943	0.00335706140382996
16	78469652	78496634	2	neutral	AA	46.1249	somatic	0	0.814529037946135	0.551971003725547
16	82415020	82436006	2	neutral	AA	54.5678	somatic	0	0.0212373070859464	0.0561216319682757
16	89022612	89097562	2	neutral	AA	10.3737	somatic	0	0.0121890152985436	0.107101659067691
17	2416388	2461358	2	neutral	AA	15.5912	somatic	0	0.00465295278436012	0.0223547408922073
17	9713520	9740502	2	neutral	AA	27.284	somatic	0	0.293096849899699	0.0950100558916769
17	10843766	10897730	2	neutral	AA	100	somatic	0	0.149886875507674	0.116370487446092
17	21288798	21303788	4	gain	AABB	0.196646	germline	1	0.000107661612808753	9.09616873554508e-05
17	21855420	21858418	6	gain	-	-1	germline	1	0.0832763101150261	0.27005727070773
17	21858418	21912382	3	gain	-	-1	germline	1	6.47361969994374e-10	1.33841981941885e-09
17	21966346	21984334	11	gain	-	-1	germline	1	0.000532068960798141	0.000671002236720897
17	21987332	22158218	5	gain	AAABB	0.742765	somatic	0	4.24575210057154e-10	1.02362562870439e-11
17	26784132	26823106	3	gain	-	-1	germline	1	2.10962538503892e-08	4.48678146858228e-08
17	26823106	26826104	4	gain	-	-1	germline	1	0.0832822074583244	0.270067512693411
17	26865078	26868076	7	gain	-	-1	germline	1	0.0832726244472512	0.270050869610659
17	26877070	26880068	5	gain	-	-1	germline	1	0.0832770472644381	0.270058550940435
17	26937030	26940028	18	gain	AAAAAAAAAAAABBBBBB	5.82877	germline	1	0.0832659905782464	0.270039347915028
17	39027964	39054946	2	neutral	AA	54.5678	germline	1	0.0132565200530905	0.016808465887071
17	41138556	41192520	2	neutral	AA	15.8366	somatic	0	0.188337538641586	0.291675715020441
17	44436356	44469334	2	neutral	AA	31.1	somatic	0	1.48741382039277e-05	1.06323265668395e-05
17	57285784	57309768	2	neutral	AA	54.5678	somatic	0	0.764339909114726	0.795876965449981
17	57309768	57390714	2	neutral	AA	62.2447	germline	1	0.113702920815761	0.322330154307392
17	57609568	57612566	0	loss	-	-1	germline	1	0.0832999015180635	0.270098240351645
17	64397040	64421024	2	neutral	AA	100	germline	1	0.00113025570283666	0.00385431502159095
17	69232814	69277784	2	neutral	AA	36.3786	somatic	0	0.838565557920499	0.758187604259025
17	75423684	75426682	1	loss	A	-1	somatic	0	0.127269792078709	0.339654203672791
17	75426682	75441672	2	neutral	AA	28.9805	somatic	0	0.00433386088313328	0.0119390094799647
17	80742136	80745134	4	gain	AAAB	26.4052	germline	1	0.0832851562568348	0.270072633792575
17	81044934	81185840	2	neutral	AA	75.2812	germline	1	2.99831493798559e-05	0.00220819952679119
17	81185840	81359724	2	neutral	AA	8.77288	germline	1	0.263248324497875	0.0864629323605602
17	82585906	82588904	4	gain	AABB	27.2188	germline	1	0.0832836818470077	0.270070073234133
17	83119550	83140536	2	neutral	AA	4.83868	somatic	0	0.640182721683475	0.879320405497481
18	5306460	5309458	1	loss	A	-1	germline	1	0.0835590252423636	0.270547923941109
18	41285458	41288456	0	loss	-	-1	germline	1	0.0832652535081175	0.27003806774878
18	44358408	44364404	1	loss	A	-1	germline	1	0.0262910238028073	0.0565139207098009
18	51037952	51061936	2	neutral	AA	54.5678	somatic	0	0.0314848682318033	0.109295665011641
18	51235820	51247812	2	neutral	AA	100	germline	1	0.355301510142597	0.6591468629962
18	51898378	51901376	2	neutral	AA	100	germline	1	0.373658524466432	0.615713862447613
18	52216166	52231156	2	neutral	AA	36.3848	germline	1	0.681087058575746	0.897501944112895
18	52456006	53376392	2	neutral	AA	36.1964	somatic	0	3.71721463987333e-09	6.71156670239981e-08
18	53385386	53886052	2	neutral	AA	9.58214	germline	1	0.000889420857942892	0.00435823686265235
18	58463998	58466996	2	neutral	AA	100	somatic	0	0.672914981012102	0.834078169137353
18	58697842	58700840	2	neutral	AA	100	somatic	0	0.857039508718252	0.920819736464177
18	60058934	60157868	2	neutral	AA	33.5365	somatic	0	0.0516703483730735	0.128203825448828
18	62037614	62319426	2	neutral	AA	100	somatic	0	0.845431628678163	0.18508761726945
18	64534948	64588912	2	neutral	AA	100	somatic	0	0.913139684145239	0.938491368950961
18	65752136	65779118	2	neutral	AA	100	somatic	0	0.498774548407001	0.490221629589083
18	66099904	66102902	1	loss	A	-1	germline	1	0.0843876183598612	0.271982602131114
18	69607564	69613560	2	neutral	AA	54.5678	somatic	0	0.469673624055529	0.7218702077286
18	74593238	74599234	2	neutral	AA	100	somatic	0	0.670858420562516	0.881114040948289
18	74848068	74851066	2	neutral	AA	100	somatic	0	0.821383952285889	0.906786738660529
18	74958994	75009960	2	neutral	AA	69.3136	somatic	0	0.00880374606563701	0.125071682879775
18	75588574	75624550	2	neutral	AA	40.7207	somatic	0	0.000711933733625776	0.0152195583457203
18	77552264	77555262	2	neutral	AA	100	somatic	0	0.232876876718381	0.473894953263906
18	77858060	78037940	2	neutral	AA	16.3799	somatic	0	1.48022984465629e-05	0.000262271310484952
18	78229812	78232810	2	neutral	AA	100	germline	1	0.382552320247139	0.623682112885725
18	78388706	78412690	2	neutral	AA	21.63	germline	1	0.0207784889831892	0.0894156004430392
18	78907360	78916354	2	neutral	AA	54.568	germline	1	0.590075275599814	0.914525912968647
18	79198166	79201164	3	gain	AAB	21.8406	germline	1	0.0832984268967865	0.27009567961599
19	440706	482678	2	neutral	AA	6.12371	somatic	0	0.00632071683403737	0.00142486266443809
19	2761158	2818120	2	neutral	AA	29.4179	somatic	0	0.978151395812835	0.862589609807059
19	5513322	5588272	2	neutral	AA	30.6847	somatic	0	0.00519020579452146	0.0292267218649112
19	7450030	7453028	11	gain	AAAAAAABBBB	4.86249	germline	1	0.0832667276536607	0.270040628085712
19	8880076	8925046	2	neutral	AA	1.24259	germline	1	0.0158965203063116	0.0519816988662021
19	10343100	10406058	2	neutral	AA	20.6171	somatic	0	5.94437878463273e-06	4.39369786764399e-06
19	11530308	11557290	2	neutral	AA	21.2351	somatic	0	0.00175231148466795	0.0116416275643997
19	12525644	12582606	2	neutral	AA	24.6342	somatic	0	0.000109156921146762	0.000215832319923726
19	12582606	12588602	1	loss	A	-1	germline	1	0.0143787234908859	0.0368406595461956
19	13275144	13428042	2	neutral	AA	60.6403	somatic	0	3.36772060930129e-13	3.39728245535298e-14
19	16884736	16896728	2	neutral	AA	54.5678	somatic	0	0.0459678013612273	0.0538422792868617
19	17193530	17259486	2	neutral	AA	26.3796	somatic	0	7.03127970904449e-06	5.25110370808157e-06
19	24328770	24403720	4	gain	AABB	0.396484	germline	1	9.92191602598499e-17	0
19	27242826	27338762	2	neutral	AA	1.03811	germline	1	0.00110070177898095	0.000192195970222908
19	27338762	27341760	4	gain	AABB	7.76036	germline	1	0.083286630687806	0.270075194368738
19	27344758	27380734	5	gain	AAABB	0.223437	germline	1	9.23279532459332e-09	5.58818435969499e-10
19	27380734	27383732	3	gain	AAB	2.4424	germline	1	0.0833013761604865	0.270100801105012
19	27383732	27398722	5	gain	AAABB	0.333423	germline	1	0.000107600269289139	9.08617344820284e-05
19	48912370	48921364	2	neutral	AA	54.5678	somatic	0	0.0451455087513755	0.131280684817322
19	50342416	50432356	2	neutral	AA	18.2911	somatic	0	0.0195750139125024	0.0321450414509984
19	56089582	56101574	2	neutral	AA	10.6489	somatic	0	0.239931971952713	0.503097181065635
20	59960	62958	8	gain	-	-1	germline	1	0.0832711502171406	0.270048309202842
20	15925376	15934370	2	neutral	AA	100	somatic	0	0.0230508432632206	0.0483193800805745
20	18662550	18692530	2	neutral	AA	30.5913	somatic	0	0.0188825239723171	0.0407554311178813
20	26205518	26307450	2	neutral	AA	3.1947	somatic	0	0.00077695277833494	0.00057675825149861
20	26316444	26322440	0	loss	-	-1	germline	1	0.014309600113844	0.0366366566743898
20	28780800	28786796	7	gain	-	-1	germline	1	0.0143083206666401	0.0366356058733531
20	28804784	28873738	8	gain	-	-1	germline	1	4.59560201078147e-06	1.6641429892994e-06
20	29263478	29266476	5	gain	-	-1	germline	1	0.0832770472644381	0.270058550940435
20	29266476	29314444	3	gain	-	-1	germline	1	1.46297046776588e-09	7.15886239177621e-11
20	29407382	29410380	6	gain	-	-1	germline	1	0.0832755729708998	0.270055990479456
20	29890060	29893058	5	gain	-	-1	germline	1	0.0832777844191359	0.27005983117757
20	29893058	29896056	3	gain	-	-1	germline	1	0.0833906313745851	0.270255759652565
20	30144890	30150886	0	loss	-	-1	germline	1	0.0143482636767073	0.0367538108791777
20	31053284	31056282	26	gain	-	-1	germline	1	0.0832659905782464	0.270039347915028
20	31161212	31164210	3	gain	-	-1	germline	1	0.0833493135519078	0.270184035236576
20	31164210	31167208	5	gain	-	-1	germline	1	0.0832822074583244	0.270067512693411
20	31182198	31188194	14	gain	-	-1	germline	1	0.0143078554381318	0.0366363064044467
20	31188194	31191192	4	gain	-	-1	germline	1	0.0832851562568348	0.270072633792575
20	31191192	31239160	3	gain	AAA	3.69348	germline	1	0.000118111592635611	0.000104563113045741
20	31239160	31242158	48	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6.7303	germline	1	0.0832652535081175	0.270038067748776
20	31242158	31245156	3	gain	AAA	4.12953	germline	1	0.0833116992495557	0.270118726874799
20	31245156	31248154	2	neutral	AA	27.2839	somatic	0	0.570667208157974	0.770514131757403
20	31772804	31823770	2	neutral	AA	100	somatic	0	0.493392786246704	0.204237768745024
20	60535616	60550606	1	loss	A	-1	germline	1	0.000478936684935582	0.000278850146480769
20	63026954	63068926	2	neutral	AA	52.7741	somatic	0	0.00348011217070507	0.0332466282471022
21	10669882	10690868	5	gain	AAAAA	1.57034	germline	1	4.59752877750009e-06	1.6644214457795e-06
21	10690868	10693866	49	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBB	100	germline	1	0.0832652535081175	0.270038067748776
21	10693866	10738836	6	gain	AAAABB	1.07047	germline	1	1.97416479798502e-11	1.87516668859189e-13
21	20107586	20128572	2	neutral	AA	36.3787	somatic	0	0.839487433177063	0.892241406323534
21	24016978	24037964	2	neutral	AA	100	somatic	0	0.403447247056831	0.634670351372688
21	25593926	25617910	2	neutral	AA	100	somatic	0	0.777821020722821	0.649491709312281
21	29209514	29215510	2	neutral	AA	54.5678	somatic	0	0.11927801385615	0.298371243859113
21	34054282	34069272	2	neutral	AA	54.568	somatic	0	0.223344295538324	0.360244175342198
21	35544288	35592256	2	neutral	AA	36.3795	somatic	0	0.00585094454303863	0.0209458009238903
21	35925034	35931030	2	neutral	AA	100	somatic	0	0.108841422119876	0.138641392974752
21	38488324	38509310	2	neutral	AA	46.8446	somatic	0	0.0541438458139696	0.0784979997515879
21	42688522	42706510	2	neutral	AA	19.3799	somatic	0	0.0972570378553896	0.110264504972594
21	43273132	43294118	2	neutral	AA	100	somatic	0	0.0289047058764242	0.0325712979346062
22	11212520	11215518	5	gain	-	-1	germline	1	0.0832807330907848	0.27006495217041
22	11626244	11629242	4	gain	AAAB	81.575	germline	1	0.0832910541075861	0.270082876203552
22	18965348	19058286	2	neutral	AA	18.1894	germline	1	0.84742038445457	0.925128347648039
22	24133900	24145892	2	neutral	AA	54.5678	somatic	0	0.18052682659322	0.371875410035818
22	25435032	25575938	1	loss	A	-1	germline	1	8.94068690031642e-21	0
22	25803786	25812780	2	neutral	AA	100	somatic	0	0.487672929907032	0.59356342131966
22	29272472	29323438	2	neutral	AA	27.4282	somatic	0	0.207256891187446	0.310221074541778
22	33127900	33142890	2	neutral	AA	46.2892	germline	1	0.176202660722846	0.468210384985327
22	34521970	34542956	2	neutral	AA	54.5678	somatic	0	0.271214928658104	0.736849066570613
22	35244488	35253482	2	neutral	AA	100	somatic	0	0.810581533975163	0.671141540231615
22	35592256	35631230	2	neutral	AA	12.2106	germline	1	0.203671947080185	0.37186781948519
22	36608578	36683528	2	neutral	AA	10.7485	somatic	0	0.201732874955204	0.0290560077729325
22	36728498	36746486	2	neutral	AA	46.2814	somatic	0	0.23907381263561	0.0917334942408712
22	36746486	36752482	0	loss	-	-1	germline	1	0.0143133227159296	0.0366429620343951
22	38965006	38988990	1	loss	A	-1	germline	1	1.10693391252956e-05	5.86372316069284e-06
22	39111908	39171868	2	neutral	AA	7.88231	somatic	0	0.00181087191967018	0.00341169764478033
22	41642220	41651214	2	neutral	AA	54.5678	somatic	0	0.0454918759935964	0.193119014632213
22	44739154	44748148	2	neutral	AA	13.6493	somatic	0	0.659515789130746	0.764657946927027
22	46331092	46343084	2	neutral	AA	54.5678	somatic	0	0.217037755495344	0.300014341385543
22	46714836	46723830	2	neutral	AA	54.5686	somatic	0	0.752741645168579	0.891656082427103
22	49083256	49122230	2	neutral	AA	13.7479	germline	1	0.231172977629865	0.143703733664218
22	50642216	50645214	4	gain	AABB	20.8941	germline	1	0.0832851562568348	0.270072633792575
X	3522650	3525648	2	gain	-	-1	somatic	0	0.470606195467827	0.697428994474311
X	45926362	45929360	0	loss	-	-1	germline	1	0.0832652535081175	0.27003806774878
X	58487982	58490980	0	loss	-	-1	somatic	0	0.0832652535081175	0.27003806774878
X	78268786	78271784	2	gain	-	-1	germline	1	0.349878068541395	0.593923316514929
X	103925670	103955650	2	gain	-	-1	germline	1	0.723416203879101	0.944570777812329
X	104006616	104048588	2	gain	-	-1	germline	1	0.0577132864816692	0.132544280853041
X	141787412	141793408	0	loss	-	-1	germline	1	0.0143217016941824	0.0366695951342283
X	145340042	145343040	0	loss	-	-1	germline	1	0.0832733615702349	0.270052149821218
X	155560224	155563222	0	loss	-	-1	germline	1	0.0832659905782464	0.270039347915033
Y	10654892	10657890	8	gain	-	-1	germline	1	0.0832704131100136	0.270047029005578
Y	10660888	10663886	3	gain	-	-1	germline	1	0.0833058002146344	0.270108483471451
Y	10666884	10669882	5	gain	-	-1	germline	1	0.0832785215791194	0.270061111419135
Y	10753826	10759822	4	gain	-	-1	germline	1	0.0143129736856982	0.0366443633544388
Y	10759822	10765818	6	gain	-	-1	germline	1	0.014309251163689	0.0366366566743885
Y	10765818	10774812	3	gain	-	-1	germline	1	0.00384439543288089	0.00934954788070497
Y	10774812	10777810	5	gain	-	-1	germline	1	0.0832792587443887	0.27006239166513
Y	10777810	10795798	2	gain	-	-1	germline	1	0.121631202279505	0.0997010949404449
Y	10795798	10801794	6	gain	-	-1	germline	1	0.0143097164322304	0.0366384080680483
Y	10801794	10843766	2	gain	-	-1	germline	1	0.487598826317349	0.0422064830622937
Y	10843766	10846764	3	gain	-	-1	germline	1	0.0832940031598302	0.270087997515364
Y	10846764	10876744	2	gain	-	-1	germline	1	0.164950212362622	0.18082109882652
Y	10876744	10894732	3	gain	-	-1	germline	1	0.000126760857035243	0.000134824757004326
Y	10924712	10927710	5	gain	-	-1	germline	1	0.0832777844191359	0.27005983117757
Y	10927710	10933706	2	gain	-	-1	germline	1	0.0900539267316586	0.20925742933514
Y	10933706	10939702	4	gain	-	-1	germline	1	0.0143143698516723	0.0366475164959738
Y	10939702	10954692	2	gain	-	-1	germline	1	0.902142618362838	0.401187140330831
Y	10957690	10960688	4	gain	-	-1	germline	1	0.083286630687806	0.270075194368738
Y	10972680	10984672	2	gain	-	-1	germline	1	0.270147638886772	0.270314045472464
Y	10984672	10990668	9	gain	-	-1	germline	1	0.0143084369758521	0.0366377075017942
Y	10990668	10999662	2	gain	-	-1	germline	1	0.173145185080125	0.207625426635332
Y	10999662	11002660	8	gain	-	-1	germline	1	0.0832711502171406	0.270048309202842
Y	11002660	11005658	3	gain	-	-1	germline	1	0.0833183360682928	0.270130251042482
Y	11005658	11020648	2	gain	-	-1	germline	1	0.0269763943035997	0.0504097563880244
Y	11020648	11035638	3	gain	-	-1	germline	1	0.00436746482814787	0.011668308255806
Y	11290468	11305458	30	gain	AAAAAAAAAAAAAAAAAAAABBBBBBBBBB	14.1143	germline	1	0.000107520163456492	9.08074560401761e-05
Y	11305458	11335438	12	gain	AAAAAAAABBBB	3.33464	somatic	0	0.000107533238115078	9.08248217892371e-05
Y	11530308	11533306	19	gain	AAAAAAAAAAAAABBBBBB	11.748	germline	1	0.0832659905782464	0.270039347915028
Y	11686204	11689202	3	gain	AAB	12.4378	germline	1	0.0833308734499394	0.270152019893874
Y	11689202	11692200	6	gain	AAAABB	100	germline	1	0.0832763101150261	0.27005727070773
Y	11716184	11719182	3	gain	AAA	7.02916	germline	1	0.0833116992495557	0.270118726874799
Y	11719182	11725178	20	gain	AAAAAAAAAAAAAABBBBBB	83.602	germline	1	0.0143064598326682	0.0366321033936794
Y	11725178	11746164	2	gain	AA	5.08129	germline	1	0.888685393455126	0.16853660064642
Y	11746164	11749162	9	gain	AAAAAABBB	3.65046	germline	1	0.0832682018203455	0.270043188440368
Y	26637230	26640228	6	gain	AAABBB	78.812	germline	1	0.0832755729708998	0.270055990479456
Y	56827090	56830088	14	gain	AAAAAAAAABBBBB	31.3436	germline	1	0.0832667276536607	0.270040628085712
Y	56830088	56836084	37	gain	AAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBB	23.9848	germline	1	0.0143061109500659	0.0366314029329023
Y	56836084	56851074	10	gain	AAAAAAABBB	1.86904	germline	1	0.000532093528077105	0.000671040730311989
