chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	2120180	2284564	2	neutral	AA	14.4802	somatic	0	0.163030592135862	0.0465690192596634
1	14904772	15065420	2	neutral	AA	23.946	somatic	0	0.110745012566816	0.0188348908970649
1	16339396	16350604	1	loss	A	-1	somatic	0	6.76587352854343e-05	5.528649723896e-05
1	32899216	33289628	2	neutral	AA	17.6003	somatic	0	6.068890754118e-20	1.11022302462516e-16
1	39429744	39467104	2	neutral	AA	18.1893	somatic	0	0.00435603590311157	0.00953301161256337
1	44150180	44237976	2	neutral	AA	21.8271	somatic	0	1.63752550644119e-07	8.52591029998351e-07
1	44803980	45293396	2	neutral	AA	23.1115	somatic	0	5.77209965756018e-72	0
1	51554932	51558668	1	loss	A	-1	somatic	0	0.0159761081640175	0.0407175469792738
1	54418576	54422312	1	loss	A	-1	somatic	0	0.025228634937935	0.0695446392885997
1	54422312	54437256	2	neutral	AA	21.8271	somatic	0	0.000203945020534457	0.000387482463557354
1	65714372	65740524	2	neutral	AA	27.2839	somatic	0	0.174547445353999	0.23982065542548
1	72289732	72345772	1	loss	A	-1	germline	1	6.47409177198018e-21	0
1	103561920	103616092	5	gain	AAABB	100	germline	1	4.27838228574777e-12	2.54241072639161e-14
1	112858956	112862692	1	loss	A	-1	somatic	0	0.0240858148143715	0.0598472920263646
1	113962944	114035796	2	neutral	AA	43.1694	somatic	0	0.001938800478136	0.00106672911264882
1	117250624	118431200	2	neutral	AA	15.1082	somatic	0	1.98567144582028e-25	0
1	125079412	125085016	5	gain	-	-1	germline	1	0.00270150199425902	0.00496011042126454
1	125085016	125165340	3	gain	-	-1	germline	1	0.000197922478638887	0.000150954515402035
1	154541508	154547112	2	neutral	AA	36.3786	somatic	0	0.532288593400843	0.91240299407123
1	172840436	173116900	2	neutral	AA	40.4478	somatic	0	0.0357137858974203	0.000341131450767529
1	198362920	198816844	2	neutral	AA	100	somatic	0	6.43955918450836e-11	2.63497277330771e-08
1	206873528	206923964	2	neutral	AA	26.7167	somatic	0	0.996034801158991	0.480699038084757
1	209768928	209860460	2	neutral	AA	100	somatic	0	6.64307095532529e-05	0.000933118008397571
1	216927104	216998088	2	neutral	AA	36.3786	somatic	0	0.00187180718695508	0.0278535168013939
1	224012428	224014296	8	gain	AAAAAAAA	1.9472	somatic	0	0.0832769837340701	0.270058679756122
1	228331244	228676824	2	neutral	AA	22.174	somatic	0	0.321155507423834	0.459206024431962
1	232743460	232793896	2	neutral	AA	23.5322	somatic	0	0.0347503320000592	0.0413726554028206
1	234775844	234783316	7	gain	AAAAABB	3.84496	germline	1	0.000532322321149149	0.000671262884335944
1	236096520	236098388	9	gain	AAAAAABBB	100	germline	1	0.0832737513234801	0.270053065878196
1	247820088	247937772	2	neutral	AA	100	somatic	0	0.00184103754977226	0.00409456517606333
1	248907264	248925944	3	gain	-	-1	somatic	0	9.76108123098933e-06	2.40239629822891e-05
2	34472072	34505696	1	loss	A	-1	germline	1	9.883055432028e-13	3.88578058618805e-15
2	52522556	52558048	1	loss	A	-1	germline	1	1.063488273658e-12	4.55191440096314e-15
2	89000860	89824648	4	gain	-	-1	somatic	0	1.19738872137378e-19	0
2	89824648	89839592	20	gain	-	-1	germline	1	9.63952774911523e-07	2.25232169914769e-07
2	89839592	89848932	4	gain	-	-1	germline	1	0.000107689433314134	9.09325116335014e-05
2	109197676	109201412	9	gain	-	-1	germline	1	0.0143110514896022	0.0366437795020651
2	238930276	238932144	2	neutral	AA	100	somatic	0	0.798378929226247	0.897061987802467
2	239003128	239004996	2	neutral	AA	100	somatic	0	0.403858185464219	0.642386570531374
2	239016204	239018072	2	neutral	AA	100	somatic	0	0.982019267827359	0.959639805414734
2	239083452	239126416	2	neutral	AA	6.60414	somatic	0	6.72479550136757e-08	1.56191142208773e-06
2	239141360	239143228	2	neutral	AA	36.3785	somatic	0	0.112171285250462	0.317111663280865
2	239182456	239184324	2	neutral	AA	54.5678	somatic	0	0.957526915171195	0.953254206586368
2	239365520	239367388	2	neutral	AA	100	somatic	0	0.551687865554456	0.757475524958616
2	239565396	239567264	2	neutral	AA	100	somatic	0	0.582596169237194	0.778488672492019
2	239884824	239886692	2	neutral	AA	100	somatic	0	0.561229267313242	0.764095066674197
2	239920316	239922184	2	neutral	AA	54.5681	somatic	0	0.810428687437818	0.90220919346877
2	239929656	239933392	2	neutral	AA	35.3309	somatic	0	0.616792429984451	0.699508809483498
2	240196780	240204252	2	neutral	AA	36.3786	somatic	0	0.0711918895102947	0.109114127592603
2	240471376	240473244	2	neutral	AA	100	somatic	0	0.856724188038503	0.920674036113682
2	240508736	240510604	2	neutral	AA	100	somatic	0	0.197674575090366	0.432715178393557
2	240613344	240615212	2	neutral	AA	100	somatic	0	0.159314802216585	0.38413684193165
2	241102760	241110232	2	neutral	AA	100	somatic	0	0.0502925310450175	0.149405286331863
2	241110232	241117704	2	neutral	AA	21.8281	somatic	0	0.572301870557024	0.240670065841911
2	241298900	241300768	1	loss	A	100	somatic	0	0.101242899876759	0.299981437332375
2	241336260	241338128	2	neutral	AA	100	somatic	0	0.284553056100603	0.529705740095855
2	241739748	241775240	2	neutral	AA	41.2795	somatic	0	0.158671140391576	0.146742100973946
3	20548	31756	3	gain	-	-1	somatic	0	0.00272192335297706	0.00499874768279984
3	20062320	20265932	2	neutral	AA	27.975	germline	1	1.73461082190298e-16	1.59205981731247e-13
3	26391104	26426596	1	loss	A	-1	germline	1	2.2214000992729e-11	2.39253061806721e-13
3	48132756	48343840	2	neutral	AA	44.8853	somatic	0	9.31775194342872e-32	0
3	75670812	75857612	2	neutral	AA	0.603459	somatic	0	0.0226698170762464	0.13504476031039
3	90226268	90450428	2	neutral	AA	1.30046	somatic	0	9.76297674091796e-31	0
3	129945552	129960496	2	neutral	AA	54.5678	somatic	0	0.465958867189098	0.240840971612596
3	145244472	145339740	2	neutral	AA	27.2839	somatic	0	5.68284657688724e-07	8.59768437400099e-06
3	150542120	150895172	2	neutral	AA	22.3207	somatic	0	8.6982416072083e-15	4.14757117539466e-12
3	155774388	155776256	1	loss	A	-1	somatic	0	0.0961274068396541	0.291704296986445
3	179232732	179236468	2	neutral	AA	100	somatic	0	0.660990639975448	0.801748655494008
3	179245808	179350416	2	neutral	AA	92.807	somatic	0	2.37800676991897e-16	2.57571741713036e-14
3	191503624	191817448	2	neutral	AA	12.6103	somatic	0	0.000145186900992835	0.000276819463440603
3	196012976	196089564	2	neutral	AA	18.2614	somatic	0	3.9153070157302e-16	1.55431223447522e-15
3	197673628	197800652	2	neutral	AA	14.0917	somatic	0	3.33106603870814e-20	0
4	509964	674348	2	neutral	AA	22.8308	somatic	0	0.601245600506791	0.294157746315487
4	950812	991908	2	neutral	AA	6.91885	somatic	0	0.123638990413013	0.212092037331945
4	3065388	3192412	2	neutral	AA	100	somatic	0	1.17628656387894e-09	1.36906430636685e-09
4	9715468	10072256	2	neutral	AA	10.8277	somatic	0	1.59084635698382e-10	9.70887231721562e-07
4	22767184	22828828	2	neutral	AA	27.2839	somatic	0	0.00480166547658464	0.00384846144257656
4	30739808	30793980	2	neutral	AA	50.1831	somatic	0	0.836392175086079	0.0233659198750492
4	32131468	32320136	2	neutral	AA	71.3712	somatic	0	6.6504238933051e-05	0.000160671332963602
4	32421008	32445292	2	neutral	AA	56.7199	somatic	0	0.0248490123988244	0.0633361526220728
4	42325144	42345692	2	neutral	AA	70.0715	somatic	0	0.146686357683347	0.0582480942214351
4	63061812	63252348	2	neutral	AA	77.6594	somatic	0	0.23193839838106	0.0847429723822638
4	79193860	79240560	2	neutral	AA	27.2839	somatic	0	0.0973321942340773	0.237541788458633
4	81581164	82160244	2	neutral	AA	25.6568	somatic	0	0.00114728657361907	9.02936207247684e-07
4	82160244	82162112	2	neutral	AA	-1	germline	1	NA	NA
4	82162112	83705080	2	neutral	AA	3.96479	germline	1	1.8312985214263e-170	0
4	83705080	84213176	2	neutral	AA	100	somatic	0	8.25238590181761e-21	1.59872115546023e-14
4	89546316	89557524	2	neutral	AA	100	somatic	0	0.058846252318552	0.0636031631372196
4	126945544	126979168	2	neutral	AA	36.3786	somatic	0	0.00429595754303559	0.0137441358374845
4	134322276	134404468	2	neutral	AA	100	somatic	0	0.000830443712412264	0.000224298159689384
4	141654176	141760652	2	neutral	AA	85.0757	somatic	0	0.000129825494088463	3.45335324750673e-05
4	150190936	150230164	2	neutral	AA	45.1554	somatic	0	0.0117893872290897	0.0267347494718561
4	152553956	152580108	2	neutral	AA	27.2839	somatic	0	0.00147575569144901	0.00115708087331434
4	184072720	184164252	2	neutral	AA	48.1189	somatic	0	0.118006283701169	0.0884337129619185
4	184889036	184952548	2	neutral	AA	21.8349	somatic	0	0.0558711204345631	0.0147767763290795
4	189271364	189275100	1	loss	A	-1	somatic	0	0.0143894324733343	0.0367639967607333
5	709840	777088	3	gain	-	-1	germline	1	2.21624397509416e-05	1.23286734692307e-05
5	7176856	7193668	1	loss	A	-1	germline	1	2.10263035968396e-07	3.14967892878215e-08
5	140178456	140269988	2	neutral	AA	44.9001	somatic	0	0.0610879401627785	0.0168702829843195
5	140269988	140708968	2	neutral	AA	26.2105	somatic	0	2.5436461057426e-47	0
5	143460532	143538988	2	neutral	AA	30.0686	somatic	0	0.113691081271596	0.052367520248789
5	145971124	146030900	2	neutral	AA	36.3786	somatic	0	0.0259246278279813	0.0366487921658792
5	168030336	168149888	2	neutral	AA	13.642	somatic	0	0.000143186279950189	0.000150187289404413
5	171353508	171426360	2	neutral	AA	17.3924	somatic	0	4.92944107600899e-12	4.48847181644396e-10
5	176585776	176589512	2	neutral	AA	100	germline	1	0.100282741697916	0.209904909487474
5	176589512	176682912	2	neutral	AA	69.4087	germline	1	0.0673731498194363	0.101470026465246
5	179370964	179389644	2	neutral	AA	8.22772	somatic	0	0.0193465560970757	0.0212981675495789
5	181253908	181281928	2	neutral	AA	9.04558	somatic	0	0.00266962345498204	0.00466933154264682
6	297012	382940	3	gain	AAB	0.445847	germline	1	6.98675518231224e-30	0
6	491284	537984	2	neutral	AA	39.6524	germline	1	0.0255587564694795	0.208377667956714
6	767748	881696	2	neutral	AA	17.4983	somatic	0	0.0782972928088203	0.127736916616387
6	5056676	5090300	2	neutral	AA	54.5678	somatic	0	0.0542561870848533	0.0734253738870476
6	5090300	5144472	2	neutral	AA	100	germline	1	0.010447290664554	0.0398188207065037
6	17557332	17744132	2	neutral	AA	18.651	somatic	0	7.29414025739152e-39	0
6	17744132	17749736	1	loss	A	-1	somatic	0	0.0225113628499514	0.0543386719932111
6	25449632	25481388	2	neutral	AA	36.3834	somatic	0	0.0523791488162085	0.0712731077040196
6	32486388	32490124	1	loss	A	-1	germline	1	0.0182997722588339	0.0487309228561276
6	32490124	32529352	0	loss	-	-1	germline	1	9.16865449409992e-11	1.3908874052504e-12
6	32555504	32667584	1	loss	A	-1	germline	1	1.85081328343449e-15	5.55111512312578e-16
6	36384904	36424132	2	neutral	AA	21.9071	somatic	0	3.87593878381446e-10	8.5855694775816e-09
6	42003848	42005716	1	loss	A	-1	somatic	0	0.101546885763071	0.300468598229629
6	48442844	49763520	2	neutral	AA	21.6312	somatic	0	2.74989884457705e-14	1.52100554373646e-14
6	56249216	56327672	2	neutral	AA	38.4539	somatic	0	0.0283903048803082	0.128392206637448
6	60231792	60241132	3	gain	-	-1	germline	1	0.000169679345860892	0.000364077786154882
6	73881268	73892476	1	loss	A	-1	somatic	0	3.44713497222199e-05	5.84435589919829e-05
6	79776676	79847660	2	neutral	AA	100	somatic	0	0.000348878950155158	0.00427022965383361
6	80574312	80583652	1	loss	A	-1	somatic	0	0.000109933998907523	9.23962850322146e-05
6	93902492	93949192	2	neutral	AA	21.8271	somatic	0	0.00023624793271725	0.00153141539178936
6	94857040	94868248	1	loss	A	-1	germline	1	2.30342215261614e-05	1.31185410775503e-05
6	99149704	99334636	2	neutral	AA	17.6988	germline	1	1.14559596239145e-05	9.41295263050534e-05
6	101467892	101495912	2	neutral	AA	52.2355	somatic	0	0.365423341825198	0.340700030354098
6	103289192	103315344	1	loss	A	-1	germline	1	4.74479976879751e-10	1.38178357644847e-11
6	106944868	107025192	1	loss	A	16.0699	somatic	0	5.50199653130552e-23	0
6	107025192	107028928	1	loss	A	-1	somatic	0	0.0204480660476404	0.0459772847535136
6	107051344	107055080	1	loss	A	-1	somatic	0	0.0168121131502135	0.0411320405716697
6	142369620	142513456	2	neutral	AA	75.7682	somatic	0	0.0955646188452619	0.133798771363788
6	157313620	157315488	6	gain	AAAABB	9.44379	germline	1	0.0832834488601681	0.270069907767533
7	8107120	8131404	2	neutral	AA	15.6071	somatic	0	0.95285418177714	0.701923629185989
7	29215520	29265956	2	neutral	AA	15.591	somatic	0	0.649306955129076	0.641301971214399
7	32293984	32350024	2	neutral	AA	13.6438	somatic	0	0.991795475431718	0.270610461952826
7	32441556	32510672	2	neutral	AA	100	somatic	0	1.0311180993694e-06	6.18621487624704e-06
7	47297760	47366876	2	neutral	AA	26.3882	somatic	0	4.36465166539918e-07	1.83274252896215e-05
7	48179456	48299008	2	neutral	AA	5.14933	somatic	0	6.15854394640173e-07	8.39455489565211e-07
7	50026908	50163272	2	neutral	AA	100	somatic	0	0.00265036972867412	0.0102048653748499
7	52662656	52677600	4	gain	AAAB	4.66721	germline	1	9.66217740550669e-07	2.25712900703279e-07
7	57470888	58053704	2	neutral	AA	0.364213	somatic	0	3.82060897017347e-10	1.52002854747479e-11
7	61096676	62297800	2	neutral	AA	1.17188	somatic	0	6.50502876061985e-11	6.37694341776296e-11
7	62297800	62456580	3	gain	AAB	0.576528	germline	1	6.97294104372976e-20	0
7	62456580	62518224	3	gain	AAB	-1	somatic	0	NA	NA
7	62518224	62574264	1	loss	A	17.321	somatic	0	5.68995666277037e-15	8.88178419700125e-16
7	64234916	65002664	2	neutral	AA	9.11673	somatic	0	5.23211175991283e-31	0
7	65002664	66964064	2	neutral	AA	3.01864	somatic	0	7.55089641590504e-250	0
7	72119744	72364452	2	neutral	AA	100	somatic	0	1.19372564947011e-45	0
7	73763584	73771056	1	loss	A	-1	somatic	0	0.000967044441990457	0.00123624427269198
7	74079276	74081144	1	loss	A	-1	somatic	0	0.0984827090505042	0.29553816773729
7	74081144	74161468	1	loss	A	100	somatic	0	2.73559647554678e-23	0
7	95555672	95772360	2	neutral	AA	15.3847	germline	1	2.51406259825408e-05	3.41156001448795e-07
7	99599892	99607364	2	neutral	AA	54.5678	somatic	0	0.894122289602347	0.620538555835803
7	100948588	100957928	3	gain	AAB	24.2482	germline	1	0.000374057395168881	0.00340813327494616
7	100957928	100959796	15	gain	AAAAAAAAABBBBBB	5.84422	germline	1	0.0832705190145266	0.270047452085457
7	100959796	100976608	3	gain	AAB	0.467121	germline	1	1.7617133080849e-06	2.04529039027346e-05
7	143847208	143850944	4	gain	AAAB	27.8348	germline	1	0.0143149870872396	0.0366457546962619
7	150439380	150646728	2	neutral	AA	100	somatic	0	0.0847497647958451	0.182021008569875
7	152178488	152402648	2	neutral	AA	12.4806	somatic	0	8.72978489325233e-14	3.35247385407911e-11
7	152402648	152408252	7	gain	AAAAAAB	9.63463	germline	1	0.002701103629503	0.00495948661452428
7	152408252	152410120	2	neutral	AA	-1	somatic	0	NA	NA
7	152410120	152462424	2	neutral	AA	2.2785	somatic	0	7.57518983996852e-08	1.35819822055794e-09
7	152462424	152466160	1	loss	A	-1	somatic	0	0.0211393798137611	0.0570985463028579
7	155576380	155766916	2	neutral	AA	45.3153	somatic	0	0.0412245216363096	0.00676195752571729
8	39375572	39528748	1	loss	A	-1	germline	1	5.64690411328231e-52	0
8	43236728	43240464	4	gain	-	-1	germline	1	0.0143168823451007	0.036654095432101
8	49055548	50523796	2	neutral	AA	13.8988	somatic	0	5.68475776831232e-31	0
8	54504504	54556808	2	neutral	AA	39.1711	somatic	0	0.00194841995105553	0.00265586212148627
8	54556808	54558676	2	neutral	AA	100	somatic	0	0.537166334264669	0.747371321122408
8	67950368	67995200	2	neutral	AA	34.8202	somatic	0	0.182491157471859	0.120487623488909
8	82911180	84134720	2	neutral	AA	51.3083	somatic	0	3.27176345731843e-21	0
8	87258016	87284168	2	neutral	AA	54.5678	somatic	0	0.538117407181859	0.111677467420932
8	93659652	93672728	2	neutral	AA	36.3786	somatic	0	0.0125100271757814	0.0212127510699246
8	101071876	101096160	2	neutral	AA	12.7922	somatic	0	0.0226551882742306	0.0499154264464853
8	111344008	111484108	2	neutral	AA	22.0719	somatic	0	0.254255557152883	0.221076834792924
8	120603684	120659724	2	neutral	AA	27.2839	germline	1	0.0724302459416861	0.0682490278256247
8	124817892	124885140	2	neutral	AA	100	somatic	0	0.000867789628795588	0.000243415285986814
8	127711424	127731972	2	neutral	AA	36.3786	somatic	0	0.00103131877733996	0.000650987130591973
8	130816040	131027124	2	neutral	AA	9.58459	somatic	0	1.59671192380614e-22	0
8	132147924	132282420	2	neutral	AA	27.2839	somatic	0	8.72097399211044e-08	5.90705877101527e-07
8	133362124	133427504	2	neutral	AA	84.6173	somatic	0	5.93192692841782e-05	2.06960314913518e-05
8	141106852	141172232	2	neutral	AA	49.9137	somatic	0	0.649844746679632	0.27768665333728
8	142220180	142274352	2	neutral	AA	1.47063	germline	1	5.90958426979904e-07	8.48731872779007e-05
8	142831016	142864640	2	neutral	AA	27.2839	somatic	0	0.489405464944806	0.504305731944311
8	143425040	143464268	2	neutral	AA	15.5922	somatic	0	0.81530328090306	0.669823607648139
8	144123672	144153560	2	neutral	AA	11.3346	somatic	0	0.00123152064111553	0.000144130573236367
8	145067012	145070748	3	gain	-	-1	somatic	0	0.0143297176043819	0.0366683663307055
9	6696780	6711724	1	loss	A	-1	germline	1	1.00691899397848e-06	2.52007799517173e-07
9	42386788	42388656	5	gain	AAAAB	52.4248	somatic	0	0.0832852961137289	0.270073115833379
9	69586736	69605416	2	neutral	AA	54.5678	somatic	0	0.197789203754178	0.22298169032077
9	70012640	70221856	2	neutral	AA	100	germline	1	0.339437365024489	0.159143305450725
9	71436056	71471548	2	neutral	AA	56.6269	somatic	0	0.326238005136492	0.527887967778382
9	71959096	71968436	2	neutral	AA	100	somatic	0	0.113516971346232	0.146637370465529
9	79627236	79649652	2	neutral	AA	36.3786	somatic	0	0.0342296844519195	0.0330981190652667
9	81173940	81198224	2	neutral	AA	27.284	somatic	0	0.14407566352729	0.434517331162297
9	82662736	82677680	2	neutral	AA	100	somatic	0	0.00773645832804694	0.00242935149685353
9	83768592	84065604	2	neutral	AA	9.23902	somatic	0	2.53577332312535e-27	0
9	85262992	85302220	2	neutral	AA	9.9529	somatic	0	0.0235647278251814	0.0163303000527235
9	88027632	88042576	2	neutral	AA	36.3786	somatic	0	0.010929871813754	0.00177001379300112
9	94873852	94914948	2	neutral	AA	36.3786	somatic	0	0.00937163705979181	0.0127422321135953
9	96315948	97287308	2	neutral	AA	15.9688	somatic	0	8.9274943778277e-79	0
9	103679604	103698284	2	neutral	AA	36.3786	somatic	0	0.431670684036961	0.574710841047277
9	106393808	106421828	2	neutral	AA	100	somatic	0	0.00594587544305302	0.00546407317989139
9	107701408	107733164	2	neutral	AA	16.0568	somatic	0	0.00031505398933782	0.000107164541002458
9	110423084	110464180	2	neutral	AA	36.3786	somatic	0	0.0153423465797354	0.00676040648717535
9	113451112	113484736	2	neutral	AA	36.3786	somatic	0	0.039080931979053	0.0993138461594798
9	114966060	114994080	2	neutral	AA	27.2839	somatic	0	0.987354507434232	0.969187057768938
9	122124236	122161596	2	neutral	AA	36.3787	somatic	0	0.230090214833005	0.383581493322456
9	126528980	126543924	2	neutral	AA	27.2839	somatic	0	0.394021681487543	0.881327175874939
9	127584400	127586268	1	loss	A	-1	somatic	0	0.0915862786163823	0.284204684901951
9	129904456	130076312	2	neutral	AA	20.6355	germline	1	2.18788028711989e-49	0
9	131402592	131467972	2	neutral	AA	27.2839	somatic	0	4.21177581665027e-10	1.71833488549211e-08
9	131742568	131746304	5	gain	AAAAB	15.2494	germline	1	0.0143127276459656	0.0366418044010162
9	132381424	132390764	2	neutral	AA	36.3786	somatic	0	0.0605775812934041	0.127249293006787
9	135939964	135996004	2	neutral	AA	64.466	somatic	0	0.296066738117908	0.543936543707393
9	137129880	137133616	2	neutral	AA	54.5678	somatic	0	0.0348489138313636	0.084905538970043
9	138119920	138123656	2	neutral	AA	54.5678	somatic	0	0.677730591274253	0.755587946453896
10	1718560	1819432	2	neutral	AA	15.8345	somatic	0	2.07010490811144e-08	9.89575171805868e-07
10	16925948	17019348	2	neutral	AA	21.8271	somatic	0	0.0542920277494895	0.039718662001292
10	26559224	26660096	2	neutral	AA	0.538184	somatic	0	0.00218859676726886	0.00570336025657203
10	26990732	27687496	2	neutral	AA	12.0652	somatic	0	1.01169929930761e-51	0
10	28797088	28868072	2	neutral	AA	75.701	somatic	0	8.69178380335702e-10	1.84792725566041e-09
10	30016892	30278412	2	neutral	AA	46.6911	somatic	0	3.45516814174935e-27	0
10	38525632	38529368	11	gain	AAAAAAAAAAB	3.36857	germline	1	0.0143089383218621	0.0366374156210485
10	39315796	41710572	2	neutral	AA	7.35107	somatic	0	1.04694240092415e-51	0
10	41858144	41914184	18	gain	AAAAAAAAAAAABBBBBB	2.78095	germline	1	9.22242616977555e-09	5.58344037671077e-10
10	42298992	42321408	2	neutral	AA	1.47785	somatic	0	3.57445913416708e-07	5.1936114749962e-06
10	46092900	46104108	2	neutral	AA	54.5678	germline	1	0.074651559683469	0.287240138879382
10	46105976	46332004	3	gain	AAB	0.260661	germline	1	5.97522808557904e-37	0
10	46515068	46559900	5	gain	AAABB	0.57982	germline	1	4.53336144293046e-16	0
10	68645264	68665812	1	loss	A	-1	somatic	0	3.35456869751887e-07	2.98775773566184e-07
10	68665812	68703172	2	neutral	AA	18.4484	somatic	0	6.44173747287703e-12	1.44295686510532e-12
10	68703172	68705040	1	loss	A	-1	somatic	0	0.0873110235233143	0.276995643929824
10	71759220	71841412	2	neutral	AA	42.693	somatic	0	0.00065341816516001	0.00307326707076383
10	72243032	72246768	1	loss	A	-1	somatic	0	0.0219785817899139	0.0493070369470147
10	75129092	75349516	2	neutral	AA	100	germline	1	1.26498805022189e-26	0
10	80374436	80417400	2	neutral	AA	18.1893	germline	1	9.89718440868186e-06	0.000129257742032762
10	82053768	82393744	2	neutral	AA	13.9573	somatic	0	2.62191670973448e-09	2.81411671743115e-10
10	97192040	97208852	2	neutral	AA	18.6127	germline	1	0.659184383390022	0.174896820827747
10	114829696	115020232	2	neutral	AA	28.5497	somatic	0	2.73805786665755e-07	1.49757469536382e-07
10	125817272	125929352	2	neutral	AA	1.82254	germline	1	0.0601946976382583	0.0237786660824043
10	130786152	130804832	2	neutral	AA	4.13943	germline	1	0.0037918435821797	0.00694933130438424
10	132997864	133055772	2	neutral	AA	18.5648	germline	1	4.7745511243208e-10	1.78005044038088e-09
11	9151332	9592180	1	loss	A	-1	somatic	0	1.7602351242311e-116	0
11	18922840	18941520	4	gain	-	-1	germline	1	4.333533367997e-08	4.13231859841545e-09
11	55221816	55313348	2	neutral	AA	4.29499	somatic	0	0.000194167955342188	9.10433093662677e-05
11	55599152	55685080	1	loss	A	-1	germline	1	5.54103850230278e-29	0
11	65464060	65525704	2	neutral	AA	100	germline	1	3.35995533284901e-12	1.61437530010744e-12
11	65525704	65559328	2	neutral	AA	36.3786	germline	1	0.854208007765472	0.717300977044844
11	67290964	67404912	2	neutral	AA	15.5735	somatic	0	1.80778146797356e-07	1.08313397876314e-05
11	69495204	69497072	2	neutral	AA	100	somatic	0	0.113021140601945	0.318406138568325
11	70763576	70778520	2	neutral	AA	18.7918	somatic	0	0.375042640169283	0.573080753236511
11	71475284	71550004	2	neutral	AA	31.9904	somatic	0	0.0136521522583033	0.030741381023354
11	76373180	76404936	2	neutral	AA	100	somatic	0	0.000527449096168964	0.00093918100320145
11	77127852	77224988	2	neutral	AA	6.36128	germline	1	1.07694798258747e-11	6.70830058169258e-11
11	77224988	78614780	2	neutral	AA	5.32593	somatic	0	1.94951220096998e-134	0
11	78614780	78880036	2	neutral	AA	24.624	somatic	0	4.83324975503242e-31	0
11	80251148	80266092	2	neutral	AA	22.6583	somatic	0	0.0708087714414555	0.0317790457836269
11	85787900	85922396	2	neutral	AA	30.2309	somatic	0	4.40235967893062e-06	5.54884002967881e-07
11	86167104	86202596	2	neutral	AA	27.2839	somatic	0	0.00177330462714674	0.00150160705227909
11	86908700	87321528	2	neutral	AA	100	somatic	0	6.54499404768129e-28	0
11	90564376	90603604	2	neutral	AA	54.5678	somatic	0	0.0528655607212355	0.00921233896094176
11	94550688	94595520	2	neutral	AA	36.3786	somatic	0	0.999895662422414	0.349648788091629
11	105013356	107273636	2	neutral	AA	7.119	somatic	0	1.30086150904571e-90	0
11	107273636	107744372	2	neutral	AA	8.49584	somatic	0	2.69816296562842e-06	2.65957653677873e-08
11	107744372	108172144	2	neutral	AA	5.2894	somatic	0	8.71198164918086e-99	0
11	108172144	108562556	2	neutral	AA	15.5908	somatic	0	3.29669928374377e-40	0
11	118085620	118141660	2	neutral	AA	100	somatic	0	0.227998929585931	0.480904875913699
11	122940552	123054500	2	neutral	AA	13.9064	somatic	0	1.06891378212582e-16	2.1538326677728e-14
11	135030248	135075080	3	gain	AAB	9.96747	somatic	0	3.3601081331774e-15	1.11022302462516e-16
12	239104	285804	2	neutral	AA	39.0248	somatic	0	0.179260868696749	0.45673246415079
12	2254676	2256544	6	gain	AAAABB	22.7371	germline	1	0.0832792926610049	0.270062689721081
12	2867380	3110220	2	neutral	AA	4.91745	somatic	0	2.46646704770642e-35	0
12	4703624	4742852	2	neutral	AA	36.3786	germline	1	0.6172385245601	0.117758875616149
12	6184948	6269008	2	neutral	AA	35.7018	somatic	0	1.15772326831561e-05	0.000142300416719809
12	11917840	11970144	2	neutral	AA	27.2841	somatic	0	0.0136240429990679	0.0224694497660339
12	11970144	11973880	2	neutral	AA	-1	germline	1	NA	NA
12	11973880	12057940	2	neutral	AA	26.7699	germline	1	7.52832733999502e-10	4.5828992822905e-09
12	13425316	13492564	2	neutral	AA	36.3786	somatic	0	0.000125012756021716	0.000176809620529905
12	15177500	15226068	2	neutral	AA	64.337	somatic	0	5.91009018703665e-05	0.000505378459003891
12	19315120	19427200	2	neutral	AA	54.5721	somatic	0	3.08518861963194e-19	1.0769163338864e-14
12	21868676	21937792	2	neutral	AA	100	somatic	0	0.0523478476664506	0.0195277363885201
12	34427240	34608436	2	neutral	AA	65.0288	somatic	0	4.12311693692887e-14	1.11022302462516e-16
12	34677552	37733600	2	neutral	AA	0.547243	germline	1	1.60725678176371e-65	0
12	39990144	40483296	2	neutral	AA	19.3713	germline	1	8.77650411961309e-08	1.93461997533007e-08
12	40483296	40485164	6	gain	AAABBB	29.6724	germline	1	0.0832788308714694	0.270061887724612
12	41994508	42213064	2	neutral	AA	1.22656	somatic	0	7.44600875162033e-18	8.88178419700125e-16
12	56312728	56549964	2	neutral	AA	13.7517	somatic	0	4.13502568548316e-44	0
12	57455944	57637140	2	neutral	AA	19.4083	somatic	0	0.000235084422293168	0.000338867732543657
12	63762312	63805276	2	neutral	AA	53.8826	somatic	0	6.3546778411997e-05	1.47553204244977e-05
12	64813996	64855092	2	neutral	AA	54.5678	somatic	0	0.546041164273574	0.15755771481686
12	69398068	69424220	2	neutral	AA	73.0738	somatic	0	0.000841412464021445	0.00160036937622388
12	71598572	71656480	2	neutral	AA	54.5678	somatic	0	0.328634098395283	0.196721627996443
12	77228724	77303444	2	neutral	AA	21.8271	somatic	0	0.0450191301752725	0.0223910362309452
12	79985892	80053140	2	neutral	AA	100	somatic	0	0.0822845320817187	0.0576557903623607
12	111185228	111289836	2	neutral	AA	54.5679	somatic	0	0.183705273713025	0.291141578095047
12	125594980	125744420	2	neutral	AA	34.0588	somatic	0	0.00571152479619755	0.0029284655624765
13	19727948	19995072	1	loss	A	-1	somatic	0	5.38307699866478e-75	0
13	22019984	22023720	0	loss	-	-1	germline	1	0.014310177041979	0.0366376350491201
13	58014476	58025684	1	loss	A	-1	germline	1	2.3413898134208e-05	1.33489491669359e-05
13	63028188	63063680	3	gain	-	-1	germline	1	2.27992699183853e-11	3.6514902213014e-11
13	63063680	63067416	5	gain	-	-1	germline	1	0.0143132378148829	0.0366437795020651
13	86738712	86755524	2	neutral	AA	21.8391	somatic	0	0.284323140628951	0.608389495982534
13	89290400	89301608	2	neutral	AA	54.5679	germline	1	0.0123608296086755	0.065513390551467
13	95051312	95111088	2	neutral	AA	12.1263	somatic	0	0.000508290500130558	0.00195720026303992
13	95692036	95729396	2	neutral	AA	36.4277	somatic	0	0.00656724165209431	0.0251074128761447
13	97875728	97890672	2	neutral	AA	100	somatic	0	0.3812334693597	0.433228599728007
13	98223176	98258668	2	neutral	AA	54.5678	germline	1	0.000568224766391846	0.00152783928062206
13	112644136	112674024	2	neutral	AA	12.1265	somatic	0	0.0451540049435795	0.0497927563693701
13	113105532	113118608	2	neutral	AA	12.4276	somatic	0	0.800894997183365	0.652313973574832
13	114330940	114342148	3	gain	-	-1	somatic	0	0.000156634864694407	0.000248247372002242
14	29568572	29740428	2	neutral	AA	100	somatic	0	0.127079324898459	0.0113413448799652
14	31223620	31229224	1	loss	A	-1	somatic	0	0.0052764068951074	0.0123739176930405
14	31229224	31468328	2	neutral	AA	14.0197	somatic	0	4.64052090052723e-59	0
14	40847556	40855028	2	neutral	AA	100	somatic	0	0.2999329342683	0.51596116581692
14	46279700	46302116	1	loss	A	-1	germline	1	2.36180396173284e-09	1.46637701980978e-10
14	49888676	49920432	1	loss	A	15.6826	somatic	0	5.29596134482409e-10	2.93970514597675e-10
14	58434776	58447852	2	neutral	AA	100	somatic	0	0.000479184195304415	0.000216031230882652
14	64218104	64417980	2	neutral	AA	29.3577	somatic	0	7.5202686122031e-39	0
14	64417980	64419848	1	loss	A	-1	somatic	0	0.100984650829661	0.299569127441627
14	69840784	69947260	2	neutral	AA	20.5362	somatic	0	1.12064176171932e-11	1.61240942819774e-09
14	73655240	73701940	2	neutral	AA	19.5188	somatic	0	2.91694605947725e-14	2.46913600676635e-13
14	76408672	76468448	2	neutral	AA	10.9348	somatic	0	1.30315602522956e-07	3.55052136358225e-07
14	76703816	76743044	2	neutral	AA	27.2839	somatic	0	0.000298531358258808	0.000193994839977174
14	77656496	77858240	2	neutral	AA	23.0656	somatic	0	1.31560651090975e-47	0
14	87954780	87980932	2	neutral	AA	35.7932	somatic	0	0.00346688808492913	0.0040171945980787
14	95706980	95748076	2	neutral	AA	43.7949	somatic	0	0.245637456257996	0.299942597166613
14	101996536	102379476	2	neutral	AA	17.4406	somatic	0	8.59816758766819e-59	0
14	103539504	103873876	2	neutral	AA	15.7634	somatic	0	4.1213355552415e-39	0
14	106864544	106879488	3	gain	AAB	18.2953	somatic	0	9.745877405045e-07	2.28875667307449e-07
15	17024952	17026820	3	gain	-	-1	germline	1	0.0833106992160253	0.270117229559522
15	17079124	17082860	10	gain	-	-1	germline	1	0.0143085740104175	0.0366360990767468
15	20271536	20359332	7	gain	AAAAABB	3.8722	germline	1	1.97689505203893e-09	7.56493756526311e-11
15	20359332	20379880	6	gain	AAAABB	-1	germline	1	NA	NA
15	20379880	20381748	3	gain	AAB	6.0851	germline	1	0.0841257538807162	0.271530035976619
15	20381748	20389220	6	gain	AAAABB	-1	germline	1	NA	NA
15	20389220	20673156	6	gain	AAAABB	0.861858	germline	1	4.37430455050309e-14	1.11022302462516e-16
15	20673156	22221728	6	gain	AAAABB	-1	germline	1	NA	NA
15	22221728	22275900	5	gain	AAABB	2.52955	somatic	0	4.25417537387202e-10	1.02646779964743e-11
15	25522484	25548636	2	neutral	AA	3.88501	somatic	0	0.878575952007943	0.947450521393053
15	25744776	25765324	2	neutral	AA	93.3037	somatic	0	0.000616541371710352	0.00174781046969263
15	33024372	33087884	2	neutral	AA	33.1754	somatic	0	0.276189489362863	0.0406622464482436
15	35460244	35716160	2	neutral	AA	100	somatic	0	7.30570478583554e-17	6.68354260824344e-14
15	42528756	42530624	1	loss	A	-1	somatic	0	0.0946269278134613	0.289243681639689
15	44277204	44282808	1	loss	A	-1	somatic	0	0.0112354055356902	0.0443560923194742
15	47421048	47637736	2	neutral	AA	28.4497	somatic	0	1.52256727274266e-23	0
15	50506984	50757296	2	neutral	AA	37.9528	somatic	0	5.00043190703992e-70	0
15	50757296	50768504	1	loss	A	-1	somatic	0	8.14874829407293e-05	0.000116954884108345
15	52694412	52720564	2	neutral	AA	100	somatic	0	0.0943884279167323	0.217777714224612
15	54846348	54885576	2	neutral	AA	21.8272	germline	1	0.788755079352894	0.100439296573018
15	59021328	59053084	2	neutral	AA	36.3786	somatic	0	2.15404121460892e-07	2.37755681919971e-07
15	61175132	61234908	2	neutral	AA	18.5937	germline	1	0.00528883327020064	0.00650948047445621
15	62553716	62566792	2	neutral	AA	36.3786	somatic	0	0.539639365315903	0.91113789109029
15	68211888	68260456	2	neutral	AA	25.5933	somatic	0	0.000149275776767812	0.00164427539467837
15	69360708	69373784	2	neutral	AA	100	somatic	0	0.0455932061722758	0.0902876174803354
15	69868804	69909900	2	neutral	AA	36.3786	somatic	0	6.15660124404533e-06	8.47582878993336e-07
15	70281632	70313388	2	neutral	AA	47.1741	somatic	0	0.0968656363935343	0.0954341724224114
15	73709412	73718752	2	neutral	AA	54.6352	somatic	0	0.486541415454669	0.540637316322266
15	74527596	74662092	2	neutral	AA	75.1682	somatic	0	0.000230869939503493	0.000259031511118946
15	76287252	76373180	2	neutral	AA	27.2881	somatic	0	0.00375497108774617	0.00503845211564147
15	77077416	77081152	1	loss	A	-1	somatic	0	0.0331297128851547	0.0965828891704326
15	79130348	79137820	2	neutral	AA	54.5678	germline	1	0.494352723340201	0.774418671192986
15	79277920	79307808	2	neutral	AA	27.2839	somatic	0	0.00212989446566774	0.00556361363370161
15	84997736	85130364	2	neutral	AA	21.8271	somatic	0	6.05480992817934e-07	1.1873065679513e-06
15	90386916	90545696	2	neutral	AA	42.3683	somatic	0	9.51220133920105e-28	0
15	91251800	91272348	2	neutral	AA	21.8271	somatic	0	0.00266678580286962	0.018146191863387
15	91446072	91466620	2	neutral	AA	36.3786	somatic	0	0.649158348075618	0.704150639181917
15	93470984	93538232	2	neutral	AA	18.1893	somatic	0	0.321285160193396	0.0466711808081237
15	94393776	94481572	2	neutral	AA	43.7915	somatic	0	2.05024275907125e-08	2.52561860314415e-10
15	94631012	94647824	2	neutral	AA	36.3786	somatic	0	0.281698208678204	0.143452842539009
15	95135372	95243716	2	neutral	AA	21.8276	somatic	0	0.0139770845525079	0.00413204924590294
15	100621688	100659048	2	neutral	AA	27.2839	somatic	0	0.411230885966504	0.234787506325263
15	101490308	101512724	2	neutral	AA	29.4934	somatic	0	0.471854967592111	0.568635213085313
16	3924668	3934008	1	loss	A	-1	somatic	0	0.000379232311718837	0.000534787256151747
16	12085960	12366160	2	neutral	AA	3.21607	somatic	0	4.82638420448716e-06	2.28912289124139e-09
16	19935296	19953976	1	loss	A	-1	germline	1	4.47830726342193e-08	4.31456359528681e-09
16	22614008	22698068	3	gain	AAB	1.6435	germline	1	7.07127260536475e-27	0
16	34049904	34051772	2	neutral	AA	36.3786	somatic	0	0.503418939405237	0.722592212016445
16	34061112	34064848	14	gain	AAAAAAAAABBBBB	6.21172	germline	1	0.0143089383218621	0.0366380739087221
16	34068584	34083528	2	neutral	AA	5.59098	germline	1	0.474295672333707	0.896947858247918
16	34083528	34085396	12	gain	AAAAAAABBBBB	100	germline	1	0.0832705190145266	0.270047452085457
16	34085396	34096604	2	neutral	AA	3.75371	germline	1	0.687648114580061	0.9502984325165
16	34096604	34098472	12	gain	AAAAAAAABBBB	5.37417	germline	1	0.0832705190145266	0.270047452085457
16	34098472	34100340	4	gain	AABB	38.7824	germline	1	0.0832977659434077	0.270094771005411
16	35878676	35925376	2	neutral	AA	54.5678	somatic	0	0.106499715147484	0.00404057330851226
16	35925376	36089760	2	neutral	AA	1.84129	somatic	0	6.20819869603915e-19	0
16	36100968	36127120	3	gain	-	-1	somatic	0	0.000533264844185708	0.000672494164463688
16	48667004	48672608	2	neutral	AA	100	somatic	0	0.737701417476396	0.565424525599918
16	58927928	58987704	2	neutral	AA	22.3902	somatic	0	0.0084935981377732	0.000228208685149278
16	68878764	68981504	2	neutral	AA	31.8914	somatic	0	6.48011784536026e-28	0
16	70150872	70162080	3	gain	AAB	9.39301	germline	1	2.21590934855408e-05	1.23178248532252e-05
16	72577404	72674540	2	neutral	AA	27.7359	somatic	0	4.63315203961363e-15	7.80375764009023e-13
17	4888556	4963276	2	neutral	AA	51.5575	somatic	0	2.30160749313486e-07	2.67221837546572e-07
17	21291464	21304540	4	gain	AABB	0.239393	germline	1	4.60362495551094e-06	1.66649481214698e-06
17	21676272	21859336	3	gain	-	-1	germline	1	2.25372932948646e-09	1.83975501499845e-10
17	21885488	21967680	0	loss	-	-1	germline	1	7.75045083817562e-30	0
17	21967680	21991964	7	gain	-	-1	germline	1	4.59719683074779e-06	1.66485379005099e-06
17	22122724	22158216	6	gain	AAAABB	0.181423	germline	1	9.26576912403602e-13	3.44169137633799e-15
17	26936560	26940296	14	gain	AAAAAAAAABBBBB	4.53144	germline	1	0.0143076996963334	0.0366339049282276
17	35553644	35611552	2	neutral	AA	88.8074	somatic	0	7.90564215398796e-11	3.82002873777765e-10
17	39242944	39246680	1	loss	A	100	somatic	0	0.0205634078275098	0.0455922545664122
17	40206832	40445936	2	neutral	AA	11.9268	somatic	0	5.45001273942936e-26	0
17	44589160	44944080	2	neutral	AA	9.56365	somatic	0	8.98541941176477e-61	0
17	58558064	59288452	2	neutral	AA	20.1628	somatic	0	1.77080868654035e-184	0
17	74385628	74415516	2	neutral	AA	18.1941	somatic	0	0.002948115214669	0.0236788972078202
17	80579916	80727488	2	neutral	AA	5.75872	somatic	0	0.258812087583234	0.104114923789597
17	81149656	81357004	2	neutral	AA	43.8378	somatic	0	0.561372746422451	0.283730430587004
18	5306988	5308856	0	loss	-	-1	somatic	0	0.0832996134542006	0.270097979286823
18	51272864	51302752	2	neutral	AA	36.3786	somatic	0	0.00711101507872433	0.00217806908283702
18	51358792	51416700	2	neutral	AA	36.3786	somatic	0	0.0281323274678275	0.00662006858614717
18	52877476	52933516	2	neutral	AA	78.2039	somatic	0	0.0061771203642304	0.000670792569457679
18	54792176	54795912	2	neutral	AA	100	somatic	0	0.627562104441965	0.723456294059184
18	56191308	56219328	2	neutral	AA	74.9555	somatic	0	0.0560878895802138	0.0180277666675434
18	56598532	56723688	2	neutral	AA	17.2575	somatic	0	2.1066215073424e-11	5.61763635609225e-10
18	59576124	59637768	2	neutral	AA	27.8829	somatic	0	0.404322271996373	0.343082589028026
18	62376256	62385596	2	neutral	AA	100	somatic	0	0.240644714197573	0.283431001307918
18	63590456	63756708	2	neutral	AA	8.77927	somatic	0	0.0926596794361027	0.0572264669438275
18	63909884	63956584	2	neutral	AA	100	somatic	0	0.00542834894229908	0.0125644918026604
18	65529440	65540648	3	gain	AAB	22.5353	germline	1	0.00405827768990762	0.00968183959997471
18	66065556	66130936	2	neutral	AA	43.3101	somatic	0	0.000808026416888131	0.00370362652725653
18	67393704	67417988	2	neutral	AA	100	somatic	0	0.145625177923934	0.157160768438564
18	68833932	68837668	2	neutral	AA	100	somatic	0	0.585702219566094	0.78622031468853
18	69850124	69865068	2	neutral	AA	100	somatic	0	0.132269904165646	0.323962605522422
18	71413640	71447264	2	neutral	AA	18.1893	somatic	0	0.980048955394543	0.507638741275854
18	73554368	73558104	2	neutral	AA	36.3786	somatic	0	0.310948493669829	0.514831702040365
18	75723116	75728720	2	neutral	AA	54.5678	somatic	0	0.0778512260619731	0.230273616193229
18	78878168	78919264	2	neutral	AA	8.53423	germline	1	0.000527865228553973	0.0040835331633452
19	450188	481944	2	neutral	AA	3.73748	germline	1	0.0281687066674759	0.0211359481717756
19	4806364	4897896	1	loss	A	35.4143	somatic	0	3.02471629163081e-25	0
19	7062908	7096532	1	loss	A	-1	germline	1	2.09977913686678e-13	5.55111512312578e-16
19	7449584	7451452	12	gain	AAAAAAAABBBB	7.84649	germline	1	0.0832705190145266	0.270047452085457
19	8886076	8917832	2	neutral	AA	0.722497	germline	1	0.284649988437314	0.315887907025204
19	9343736	9967648	2	neutral	AA	86.0529	germline	1	4.75615903079301e-115	0
19	11596544	11738512	2	neutral	AA	17.5685	somatic	0	4.23572323026126e-35	0
19	11904764	12072884	2	neutral	AA	69.097	somatic	0	2.89632398804766e-32	0
19	12072884	12085960	1	loss	A	-1	somatic	0	2.84019674941058e-05	1.49113289071856e-05
19	13619588	13634532	1	loss	A	-1	somatic	0	1.34984353466444e-05	6.59130491788007e-05
19	16670032	16800792	1	loss	A	-1	somatic	0	2.83092837937123e-41	0
19	24330700	24405420	3	gain	AAB	2.41735	germline	1	2.76173765546052e-25	0
19	24414760	27338180	2	neutral	AA	0.627469	somatic	0	1.0225905532745e-10	4.04685729371579e-10
19	27338180	27340048	4	gain	AABB	4.32436	germline	1	0.0832977659434077	0.270094771005411
19	27347520	27379276	5	gain	AAABB	0.492488	germline	1	1.97845568987475e-11	1.87849735766576e-13
19	27379276	27383012	3	gain	AAB	2.93076	germline	1	0.0210609725066057	0.0575122158110496
19	27383012	27399824	4	gain	AAAB	0.660147	germline	1	2.04122241993976e-07	3.05845827552886e-08
19	29960852	29972060	2	neutral	AA	27.2842	somatic	0	0.0114533029987653	0.0518115350856774
19	34391748	34393616	5	gain	AAABB	2.80185	germline	1	0.0832908380735523	0.270082740197815
19	56322068	56344484	1	loss	A	-1	germline	1	4.46254106831359e-08	4.41915781745905e-09
20	65380	67248	4	gain	-	-1	germline	1	0.0832945328793894	0.270089156579854
20	28557984	28559852	6	gain	-	-1	germline	1	0.0832792926610049	0.270062689721081
20	28784012	28787748	6	gain	-	-1	germline	1	0.0143111243623651	0.0366409266082262
20	28804560	28832580	8	gain	-	-1	somatic	0	4.32761486488501e-08	4.13615630634467e-09
20	28869940	28871808	7	gain	-	-1	germline	1	0.0832788308714694	0.270061887724612
20	29262220	29264088	12	gain	-	-1	germline	1	0.0832705190145266	0.270047452085457
20	29264088	29389244	3	gain	-	-1	germline	1	3.50935121836653e-11	3.10862446895044e-14
20	29407924	29411660	5	gain	-	-1	germline	1	0.0143125090070543	0.0366413655023213
20	29876792	29878660	10	gain	-	-1	germline	1	0.0832723660357692	0.270050659956591
20	29886132	29893604	3	gain	-	-1	germline	1	0.0027181883864694	0.00501204783407649
20	30812660	30838812	8	gain	-	-1	somatic	0	0.000532271002124205	0.000671182482137156
20	30939684	30943420	4	gain	-	-1	somatic	0	0.0143148413073407	0.036645315756168
20	31161976	31184392	3	gain	-	-1	somatic	0	0.0164554603860811	0.000677145790118572
20	31184392	31188128	19	gain	-	-1	germline	1	0.0143074811251761	0.0366336855196994
20	37423512	37430984	2	neutral	AA	36.3786	somatic	0	0.642260964484855	0.810500062086395
20	38772208	38790888	2	neutral	AA	54.5678	somatic	0	0.000178224182221917	5.9198215670575e-05
20	40459012	40543072	2	neutral	AA	100	somatic	0	0.000629161223816309	0.00412571240114978
20	42911696	42973340	2	neutral	AA	53.2263	somatic	0	0.00205612663450172	0.0220440608667296
20	43001360	43006964	2	neutral	AA	100	germline	1	0.946455605112148	0.441906922592708
20	43270352	43283428	2	neutral	AA	54.5678	somatic	0	0.388413373548824	0.320473681561563
20	44615312	44619048	2	neutral	AA	54.5678	somatic	0	0.899538229020391	0.674586417005034
20	45054292	45063632	2	neutral	AA	54.5678	somatic	0	0.363950587685279	0.304082213200899
20	46356288	46380572	2	neutral	AA	36.3786	somatic	0	0.00111991897442012	0.00845844207934121
20	47161396	47174472	2	neutral	AA	36.3786	somatic	0	0.0184048358228367	0.0250899001002081
20	47370612	47376216	1	loss	A	-1	somatic	0	0.00713759396069165	0.0179749616658601
20	48665136	48695024	2	neutral	AA	27.2839	somatic	0	1.26360743512668e-05	9.50490167428431e-06
20	49481452	49494528	2	neutral	AA	36.3785	somatic	0	0.10822646483027	0.196243325873222
20	51844472	51853812	1	loss	A	-1	somatic	0	0.000481018898014169	0.00231505739360294
20	51853812	51865020	1	loss	A	36.3786	somatic	0	0.000141619733162564	0.000229761909466442
20	53632148	53647092	1	loss	A	22.8949	somatic	0	1.18779096478493e-05	2.06022171593823e-05
20	53916084	53921688	2	neutral	AA	100	somatic	0	0.137395956380704	0.230947755590401
20	55382464	55395540	2	neutral	AA	100	somatic	0	0.00891474541527544	0.0552121162255694
20	56221196	56224932	2	neutral	AA	54.5678	somatic	0	0.41112941433494	0.686996729914142
20	57751088	57777240	2	neutral	AA	54.5678	somatic	0	0.20153227140572	0.467939771650955
20	58711240	58761676	2	neutral	AA	34.8824	somatic	0	0.0108411004480127	0.0700391747862567
20	58939136	58955948	2	neutral	AA	100	somatic	0	0.000474141760734731	0.00131574354807074
20	58955948	58961552	1	loss	A	-1	somatic	0	0.00675185298269511	0.0133702594082693
20	61649604	61660812	2	neutral	AA	100	somatic	0	0.0101068112098689	0.0229278150496143
20	62013864	62025072	2	neutral	AA	21.8271	somatic	0	0.0518628341439057	0.0474463275795866
20	62148360	62155832	2	neutral	AA	54.5678	germline	1	0.276657994726393	0.298072332879678
20	63665176	63747368	2	neutral	AA	4.91868	somatic	0	3.69527779083884e-06	8.57791307717903e-06
20	63868788	63878128	2	neutral	AA	18.1893	somatic	0	0.00996963344521079	0.00449203310804513
21	10421572	10423440	9	gain	AAAAAABBB	41.1548	germline	1	0.0832742130901989	0.270053867855542
21	10520576	10522444	3	gain	AAA	56.5897	germline	1	0.0833264060909622	0.27014450249338
21	10651336	10653204	4	gain	AAAA	15.7496	germline	1	0.0833009991090783	0.270100385516156
21	10653204	10658808	6	gain	AAAAAA	4.77932	germline	1	0.0027013559209488	0.00495975395146364
21	10658808	10690564	4	gain	AAAA	2.15916	germline	1	4.28540558011859e-12	2.54241072639161e-14
21	10690564	10692432	8	gain	AAAAABBB	31.6696	germline	1	0.0832769837340701	0.270058679756122
21	10694300	10703640	4	gain	AAAA	3.56048	germline	1	0.000107748914564262	9.09583832136018e-05
21	10703640	10707376	7	gain	AAAAABB	10.8792	germline	1	0.014310177041979	0.0366380739087221
21	10707376	10739132	4	gain	AAAB	1.69865	somatic	0	9.29311842571989e-13	3.44169137633799e-15
21	10752208	10755944	10	gain	AAAAAAABBB	8.68502	germline	1	0.0143083554274781	0.0366354408201183
21	16373020	16376756	2	neutral	AA	100	somatic	0	0.627613485321857	0.92579089163818
21	24213016	24502556	2	neutral	AA	44.7484	somatic	0	0.36704865039423	0.0647747974399279
21	25578524	25651376	2	neutral	AA	100	somatic	0	0.0133913409566027	0.00216568634212044
21	26215512	26249136	2	neutral	AA	36.3786	somatic	0	0.375048484773055	0.133927988046701
21	27033696	27151380	2	neutral	AA	100	somatic	0	0.0452080113264092	0.0563855116473747
21	28571060	28578532	2	neutral	AA	100	somatic	0	0.200967606249999	0.154889807008536
21	30016892	30048648	2	neutral	AA	79.6423	somatic	0	0.122092617667271	0.330467466959458
21	31188128	31257244	2	neutral	AA	36.3786	somatic	0	2.13049446876803e-06	7.92484416978212e-08
21	34302084	34307688	2	neutral	AA	22.1726	somatic	0	0.139547956532224	0.230622251613183
21	36145800	36157008	2	neutral	AA	54.5678	somatic	0	0.00267538372600899	0.00877596979505602
21	37208692	37218032	2	neutral	AA	36.3786	somatic	0	0.0109305627274297	0.0586378231550233
21	38506952	38744188	2	neutral	AA	100	somatic	0	0.000376763368353464	0.000341001494635562
21	39388648	39409196	2	neutral	AA	54.5678	germline	1	0.000236511457328088	0.000775844149824789
21	42661384	42666988	2	neutral	AA	54.5678	somatic	0	0.784169131082449	0.74472253338838
21	45340096	45394268	2	neutral	AA	19.8653	somatic	0	5.12617147591992e-05	0.00120168235431384
21	46083560	46223660	2	neutral	AA	21.3889	germline	1	0.00206320574783225	0.00917571862020761
21	46223660	46225528	2	neutral	AA	-1	germline	1	NA	NA
21	46225528	46558032	2	neutral	AA	4.47224	germline	1	6.93177847991784e-17	9.88098491916389e-14
22	11626432	11630168	4	gain	AABB	64.2747	germline	1	0.0143198714706897	0.0366521198445737
22	17198676	17236036	2	neutral	AA	52.0175	somatic	0	4.47874838293452e-09	7.20813010390842e-08
22	18080372	19118980	2	neutral	AA	5.4685	somatic	0	3.62353812773911e-07	2.16368156724656e-09
22	21442772	21453980	2	neutral	AA	36.3786	somatic	0	0.034651989368867	0.085244624198679
22	21655724	21892960	2	neutral	AA	74.6416	somatic	0	9.56484726072723e-40	0
22	22901680	22903548	5	gain	AAABB	96.8492	germline	1	0.0832876052273532	0.270077125954803
22	30601576	30605312	2	neutral	AA	21.8271	somatic	0	0.122728433786254	0.203800509919642
22	34260988	34294612	2	neutral	AA	54.5782	somatic	0	0.571160706644454	0.229998854339354
22	35279048	35301464	2	neutral	AA	54.5678	somatic	0	0.00564458704266993	0.0181502392227878
22	37614048	37628992	2	neutral	AA	21.8272	somatic	0	0.307022824097228	0.521222052946722
22	39711812	39801476	2	neutral	AA	12.3306	somatic	0	0.90397675869108	0.635782717875805
22	40376820	40401104	2	neutral	AA	27.2839	somatic	0	0.000196017081726963	0.000229059549132549
22	40683172	40720532	2	neutral	AA	13.642	somatic	0	2.15553343924441e-11	3.35287353436797e-13
22	40720532	40726136	1	loss	A	-1	somatic	0	0.00498348083777099	0.0115566320977627
22	42519416	42551172	2	neutral	AA	8.50632	somatic	0	5.38167713128857e-07	4.14325044850727e-06
22	44734864	44742336	2	neutral	AA	18.2108	somatic	0	0.0103951159106205	0.0206143188016322
22	45007592	45022536	2	neutral	AA	53.0912	somatic	0	0.0496164297079316	0.109327541082907
22	48114076	48132756	2	neutral	AA	32.6522	somatic	0	0.368291867174803	0.761218752668477
22	49546832	49632760	2	neutral	AA	100	somatic	0	1.28599477772623e-09	2.55312331498558e-07
22	49754180	49767256	2	neutral	AA	27.2839	germline	1	0.569929752723758	0.885658673277999
X	23809528	23822604	1	loss	A	-1	somatic	0	2.03010249781831e-05	9.65102943961682e-06
X	23822604	24128956	1	loss	A	18.0861	somatic	0	3.73987859930233e-85	0
X	58311488	62619096	2	neutral	AA	0.844508	somatic	0	3.29761621529363e-62	0
X	63250480	63285972	3	gain	AAB	24.118	germline	1	4.48588928560623e-10	1.3455681013852e-11
X	123926856	123953008	1	loss	A	-1	somatic	0	4.22633239156892e-09	1.92720173153305e-08
X	123953008	124029596	2	neutral	AA	100	somatic	0	4.24303982164834e-19	0
X	126289876	126571944	2	neutral	AA	15.6634	somatic	0	0.943317208639153	0.0704879225638866
X	135575704	135684048	2	neutral	AA	18.1893	somatic	0	0.022760681658432	0.0180182251080557
X	138900744	139066996	2	neutral	AA	100	somatic	0	0.0198020794306209	0.000264600244884394
