chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	9258040	9344324	3	gain	-	-1	germline	1	3.02706055858566e-25	0
1	16613168	16636488	9	gain	-	-1	germline	1	0.000532155907954768	0.000671103867341261
1	16720440	16944312	4	gain	-	-1	germline	1	9.14962864708945e-11	1.38800082538637e-12
1	31430696	31433028	9	gain	-	-1	germline	1	0.0832702165970405	0.270046832865675
1	72301328	72345636	1	loss	A	-1	germline	1	6.23809153209626e-13	2.77555756156289e-15
1	125067492	125163104	3	gain	-	-1	germline	1	1.76422429957102e-08	1.27339889743894e-08
1	125163104	125165436	6	gain	-	-1	germline	1	0.0832759171145278	0.270056733332726
1	152482484	152536120	2	neutral	AA	55.7694	germline	1	0.478360686979105	0.693957526809851
1	152582760	152613076	1	loss	A	-1	germline	1	5.27703263105947e-09	1.54610768632324e-10
1	162293208	162344512	2	neutral	AA	54.5728	somatic	0	0.247946993095057	0.557287452477584
1	163230672	163253992	2	neutral	AA	100	somatic	0	0.834987978533838	0.66908953388488
1	169415136	169461776	2	neutral	AA	100	germline	1	0.513490656563344	0.399176248602026
1	175329088	175385056	2	neutral	AA	54.5678	germline	1	0.0280825952891177	0.0525278657669698
1	179314476	179335464	2	neutral	AA	41.2052	somatic	0	0.633179781082079	0.809494346694455
1	179916132	180007080	2	neutral	AA	21.8597	somatic	0	0.00495695309368461	0.0111295661244178
1	184678076	184743372	2	neutral	AA	100	somatic	0	0.570912438930352	0.856679233621479
1	188544532	188588840	2	neutral	AA	36.9508	somatic	0	0.580884070882369	0.593292751064334
1	194190304	194325560	2	neutral	AA	21.0022	somatic	0	0.43001806352862	0.451807351489567
1	199777776	199817420	2	neutral	AA	100	somatic	0	0.259439800768737	0.306492682481686
1	201442824	201473140	2	neutral	AA	100	germline	1	0.865934578830319	0.288820459800604
1	202105112	202128432	2	neutral	AA	36.3797	somatic	0	0.459611116794969	0.798098515104962
1	203161508	203175500	2	neutral	AA	100	somatic	0	0.0630477692475254	0.0943733983265241
1	203655892	203660556	2	neutral	AA	100	somatic	0	0.429294327465476	0.66945147036468
1	218604012	218666976	2	neutral	AA	100	somatic	0	0.184842403900046	0.194454396839875
1	219254640	219401556	2	neutral	AA	36.8079	somatic	0	0.000132614001812382	0.00386279123279043
1	224011920	224014252	7	gain	AAAAAAA	1.68555	germline	1	0.0832736368695993	0.270052773114111
1	228172208	228193196	2	neutral	AA	18.1895	somatic	0	0.596258407608215	0.620017716316633
1	230340968	230371284	2	neutral	AA	100	somatic	0	0.00440199247651009	0.0102673934278241
1	234776432	234783428	6	gain	AAAABB	2.51099	germline	1	0.00270078746979016	0.00495863155942411
1	236096344	236098676	4	gain	AABB	16.1691	germline	1	0.0832776273314167	0.270059703524506
1	244610476	244650120	2	neutral	AA	20.3369	somatic	0	0.42230404127335	0.257759519545671
2	13992	60632	3	gain	-	-1	somatic	0	4.08197820312543e-14	8.65973959207622e-15
2	3178516	3183180	4	gain	-	-1	germline	1	0.0143110053675152	0.0366399915410486
2	34469292	34504272	1	loss	A	-1	germline	1	8.70094575795837e-10	3.42779138406968e-11
2	78474132	78497452	1	loss	A	-1	germline	1	8.76990807126288e-05	5.16635959332268e-05
2	89772672	89786664	5	gain	-	-1	germline	1	2.2107105422583e-05	1.22952410457344e-05
2	89788996	89795992	3	gain	-	-1	germline	1	0.00405425259774237	0.0102712320544088
2	89795992	89826308	4	gain	-	-1	somatic	0	1.97711559098385e-09	7.57274243312622e-11
2	89826308	89842632	25	gain	-	-1	germline	1	4.59401691362143e-06	1.66342330099045e-06
2	89842632	89851960	4	gain	-	-1	germline	1	0.000532311108009017	0.000671173339438114
2	91412068	91414400	4	gain	-	-1	germline	1	0.0832776273314167	0.270059703524506
2	117040748	117045412	1	loss	A	-1	germline	1	0.0143226146012189	0.0366700725358743
2	146104464	146118456	1	loss	A	-1	germline	1	6.36457058327749e-05	4.2028032632091e-05
2	169464108	169468772	1	loss	A	-1	germline	1	0.0204441431950966	0.0556057757520236
2	172040968	172045632	1	loss	A	-1	germline	1	0.0157909070866837	0.0411038105404373
2	179202540	179211868	1	loss	A	-1	somatic	0	0.000906017212043441	0.00102795892153296
2	203317752	203327080	1	loss	A	-1	germline	1	0.000612470186437463	0.000799782386425751
2	219187012	219191676	0	loss	-	-1	germline	1	0.0143079469520192	0.0366359281980996
2	240310268	240317264	2	neutral	AA	100	somatic	0	0.128681146068639	0.0926198141765571
2	240785996	240886272	2	neutral	AA	100	somatic	0	0.000122337730378311	0.00320709765796845
2	241571880	241592868	2	neutral	AA	2.45957	somatic	0	0.582529177292804	0.43819651099817
3	20988	34980	3	gain	AAB	58.1082	somatic	0	0.000537529953202829	0.00068112724535474
3	55968	90948	4	gain	AAAB	100	germline	1	1.97784077701256e-11	1.88515869581352e-13
3	14313816	14367452	2	neutral	AA	100	germline	1	0.0009104832130117	0.0097312967058345
3	21657284	21706256	2	neutral	AA	100	somatic	0	0.0128231210485758	0.0408986590381101
3	32060336	32067332	0	loss	-	-1	germline	1	0.0144408874695195	0.037037382014663
3	41073516	41199444	2	neutral	AA	44.366	somatic	0	0.0154954690564068	0.022020373522418
3	41199444	41201776	1	loss	A	-1	somatic	0	0.124158411303033	0.335101458322268
3	70976752	71289240	2	neutral	AA	51.2033	somatic	0	0.00307068132343343	0.000890865941325036
3	75713044	75773676	2	neutral	AA	0.986404	germline	1	1.38950328809246e-07	4.48878558767518e-08
3	80010920	80015584	1	loss	A	-1	germline	1	0.0227133065779934	0.0628433270491643
3	82662404	82709044	2	neutral	AA	54.5678	germline	1	0.177655402886752	0.210967497222581
3	90302036	90444288	2	neutral	AA	3.37765	somatic	0	0.224824169690412	0.16176472270254
3	100201376	100236356	2	neutral	AA	54.5678	somatic	0	0.296696926070096	0.585026874149695
3	106849908	106880224	2	neutral	AA	100	somatic	0	0.409633589081003	0.299752701297521
3	113636028	113778280	2	neutral	AA	100	somatic	0	0.0133230946980047	0.0421249078916968
3	117308928	117367228	2	neutral	AA	32.587	somatic	0	0.217096256860569	0.292461104920006
3	119629268	119736540	2	neutral	AA	18.1894	germline	1	0.826153208343779	0.700808305882719
3	131464168	131597092	2	neutral	AA	36.3877	germline	1	0.0116534845270591	0.0146950699134906
3	131988868	131995864	1	loss	A	-1	germline	1	0.0189009990114432	0.0507567097374719
3	131995864	132114796	2	neutral	AA	54.5699	somatic	0	0.26774741355451	0.188674558496708
3	139110796	139117792	1	loss	A	-1	somatic	0	0.0131110799955312	0.0418526034862552
3	142319628	142697412	2	neutral	AA	13.9945	somatic	0	4.54358774322551e-07	1.65055365819455e-06
3	146666476	146675804	1	loss	A	-1	germline	1	0.00411601255103292	0.0105439653026849
3	149245668	149252664	1	loss	A	-1	germline	1	0.00610801437794038	0.00930618373537972
3	162806248	162827236	1	loss	A	-1	germline	1	1.38114017246632e-06	2.8504006044372e-07
3	165835516	165844844	2	neutral	AA	100	germline	1	0.610853917228537	0.349365124221325
3	177584132	177607452	2	neutral	AA	100	somatic	0	0.494011626748042	0.225794043927866
3	182798484	182884768	2	neutral	AA	22.1584	somatic	0	0.866531615358154	0.720735693382212
3	191345264	191354592	1	loss	A	-1	germline	1	0.00176897455865419	0.00208547964691974
3	193157228	193168888	1	loss	A	-1	germline	1	0.000399561872576689	0.000304380204880661
3	195265356	195270020	2	neutral	AA	100	somatic	0	0.708294559429528	0.944951550635661
4	555016	557348	4	gain	-	-1	germline	1	0.0832781974100355	0.270060693593732
4	9472584	9474916	0	loss	-	-1	germline	1	0.0832656564106485	0.270038912682804
4	10209496	10232816	1	loss	A	-1	germline	1	5.16483307856069e-07	3.18456464531991e-08
4	40294628	40296960	4	gain	-	-1	germline	1	0.0832781974100355	0.270060693593732
4	60464096	60466428	0	loss	-	-1	germline	1	0.0832673664568378	0.270041882731512
4	61072748	61077412	0	loss	-	-1	germline	1	0.0143146942237904	0.0366516419762617
4	63829172	63850160	1	loss	A	-1	germline	1	2.42020115650452e-06	8.47428098138536e-07
4	68518824	68621432	1	loss	A	-1	germline	1	5.98089752876433e-18	0
4	70619956	70624620	1	loss	A	-1	germline	1	0.0207401180216635	0.0565451559500287
4	74558704	74563368	1	loss	A	-1	germline	1	0.020669594930164	0.0563004871574194
4	91010964	91015628	0	loss	-	-1	germline	1	0.0143225245752197	0.0366798331732968
4	118206748	118209080	0	loss	-	-1	germline	1	0.0832656564106485	0.270038912682804
4	165079948	165084612	1	loss	A	-1	germline	1	0.0180138966669142	0.0479801976635044
4	172502704	172512032	1	loss	A	-1	germline	1	0.00130616776589124	0.00148657367923211
4	185519928	185524592	1	loss	A	-1	germline	1	0.0210788274372861	0.0576252033281635
5	1177660	1179992	0	loss	-	-1	somatic	0	0.0832702165970405	0.270046832865681
5	12809676	12821336	1	loss	A	-1	germline	1	0.00035202448491282	0.000335526429717903
5	21449736	21452068	0	loss	-	-1	germline	1	0.0832673664568378	0.270041882731512
5	23903000	23905332	0	loss	-	-1	germline	1	0.0832679364785563	0.270042872753047
5	46269212	46276208	1	loss	A	-1	germline	1	0.0151713347408708	0.0392418863554193
5	46404468	46411464	1	loss	A	-1	germline	1	0.00500494086102768	0.00944390372143333
5	49599308	49601640	188	gain	-	-1	germline	1	0.083265086401574	0.27003792267186
5	50937876	50944872	1	loss	A	-1	somatic	0	0.00596453753254416	0.00959520847028572
5	86918304	86922968	0	loss	-	-1	germline	1	0.0143175739138941	0.036663024599956
5	87622568	87655216	1	loss	A	-1	germline	1	1.38323998421824e-09	3.00302005484809e-11
5	92344868	92347200	0	loss	-	-1	germline	1	0.0832781974100355	0.270060693593739
5	139598184	139600516	1	loss	A	-1	somatic	0	0.127406786059037	0.339853763207449
5	140971732	140974064	2	neutral	AA	100	somatic	0	0.0983489094464858	0.29532683390332
5	141349516	141351848	2	neutral	AA	100	somatic	0	0.205418736317641	0.442064137405301
5	143086856	143107844	2	neutral	AA	100	somatic	0	0.122805009368591	0.159480438751874
5	143723492	143847088	2	neutral	AA	34.4593	somatic	0	0.161314541113534	0.261939992769326
5	144987436	144989768	2	neutral	AA	100	somatic	0	0.159241737841574	0.384059569607469
5	146766752	146769084	2	neutral	AA	100	somatic	0	0.361781711691751	0.60490481809828
5	148282552	148284884	2	neutral	AA	100	somatic	0	0.394030427685281	0.633868477935117
5	148993812	148996144	2	neutral	AA	54.5678	somatic	0	0.579153618182746	0.776212337655303
5	149385588	149387920	2	neutral	AA	100	somatic	0	0.407274607064277	0.645368278410058
5	151719920	151722252	2	neutral	AA	100	somatic	0	0.0925001933675237	0.285726929209057
5	154840136	154842468	2	neutral	AA	100	somatic	0	0.644669465652104	0.81763749622391
5	154905432	154907764	2	neutral	AA	100	somatic	0	0.42056180607312	0.656675718244919
5	155392820	155418472	2	neutral	AA	33.2643	somatic	0	0.306895822794441	0.604444462573016
5	158128256	158130588	2	neutral	AA	100	somatic	0	0.643947269403015	0.817202230034878
5	159238288	159347892	2	neutral	AA	100	somatic	0	0.24236373553713	0.320613636984335
5	159690696	159693028	2	neutral	AA	100	somatic	0	0.332101745025324	0.577064998676192
5	160175752	160185080	2	neutral	AA	36.4385	somatic	0	0.974851145493049	0.996733782169922
5	160238716	160241048	2	neutral	AA	100	somatic	0	0.817609081431534	0.905220806564079
5	160632824	160635156	2	neutral	AA	100	somatic	0	0.318830027712341	0.564192695996984
5	160772744	160775076	2	neutral	AA	100	somatic	0	0.124860684882097	0.336141847882404
5	162789924	162792256	2	neutral	AA	100	somatic	0	0.520559019355218	0.735298377249763
5	163494188	163533832	2	neutral	AA	100	somatic	0	0.377523274624772	0.207245810306844
5	164590228	164592560	2	neutral	AA	100	somatic	0	0.204572624381047	0.441020709040405
5	166744996	166747328	2	neutral	AA	100	somatic	0	0.379197620541544	0.620732013712866
5	166842940	166845272	2	neutral	AA	54.5678	somatic	0	0.139760014944	0.357512361521815
5	167383964	167386296	2	neutral	AA	54.5678	somatic	0	0.147400558690191	0.368084121543742
5	168291112	168293444	2	neutral	AA	100	somatic	0	0.202478362013327	0.438507836229802
5	168724864	168731860	2	neutral	AA	36.3915	germline	1	0.53734343935516	0.51119831409869
5	168883440	168885772	2	neutral	AA	100	somatic	0	0.819298545507178	0.905920438720562
5	169300868	169303200	2	neutral	AA	100	somatic	0	0.287458643322173	0.532698899650317
5	170163708	170191692	2	neutral	AA	100	somatic	0	0.58587852875181	0.460057115749099
5	171026548	171035876	2	neutral	AA	54.5678	somatic	0	0.392430638451507	0.451402119631058
5	171110500	171112832	2	neutral	AA	100	somatic	0	0.141843310365588	0.360395326799169
5	172686932	172689264	2	neutral	AA	100	somatic	0	0.267244645718408	0.511572516615792
5	175753512	175767504	2	neutral	AA	100	somatic	0	0.0725867412841338	0.146741970886572
5	178584560	178586892	6	gain	AAAAAA	6.3372	somatic	0	0.083275347048554	0.270055743274098
5	179211868	179214200	2	neutral	AA	100	somatic	0	0.703131990378338	0.850802422977675
5	179454396	179456728	2	neutral	AA	36.3786	somatic	0	0.478623098404484	0.703721857310486
5	180424508	180426840	1	loss	A	-1	somatic	0	0.124955525909447	0.336272337619372
5	180949208	181002844	1	loss	A	-1	germline	1	1.80240547380115e-15	0
6	256520	296164	3	gain	AAB	2.04024	germline	1	4.2970603095139e-12	2.56461518688411e-14
6	296164	366124	4	gain	AABB	11.3366	somatic	0	1.09063516523478e-20	0
6	366124	382448	4	gain	AABB	1.20459	germline	1	2.21094238727315e-05	1.22957865095197e-05
6	6996000	7098608	2	neutral	AA	78.1376	somatic	0	2.42029311073737e-08	6.75836919761252e-09
6	13168804	13210780	2	neutral	AA	54.5678	somatic	0	0.728121124257934	0.589944298662235
6	18861216	18961492	2	neutral	AA	15.6777	somatic	0	0.0494645428898679	0.0562203145544863
6	32487092	32603692	0	loss	-	-1	germline	1	4.10287574657763e-17	0
6	32603692	32666656	1	loss	A	-1	germline	1	4.25910396173347e-05	8.9134531814361e-06
6	35786872	35798532	3	gain	AAB	3.42243	germline	1	0.000108375672012038	9.223296541927e-05
6	40576800	40609448	2	neutral	AA	100	somatic	0	0.340245927298233	0.325512924821137
6	54864964	55063184	2	neutral	AA	100	somatic	0	0.000810179825758919	0.00269810573194829
6	63456052	63509688	2	neutral	AA	36.3787	somatic	0	0.0573048187573715	0.089291903589354
6	68689060	68705384	3	gain	AAB	7.603	germline	1	4.60714572613056e-06	1.66881261021157e-06
6	69428304	69479608	2	neutral	AA	100	somatic	0	0.416370017940605	0.584920920530021
6	73882424	73891752	1	loss	A	-1	germline	1	0.00114669585577007	0.00148350994913582
6	75022772	75027436	2	neutral	AA	100	somatic	0	0.185819068923248	0.189687776057407
6	99860904	99888888	2	neutral	AA	36.3789	somatic	0	0.0571395017024145	0.0946568422213672
6	114386932	114400924	2	neutral	AA	100	germline	1	0.107506424652949	0.183410153277884
6	115594908	115599572	2	neutral	AA	100	somatic	0	0.252380155346433	0.233756348496848
6	153394296	153431608	2	neutral	AA	0.335639	somatic	0	0.00020657432465474	0.00497477890820319
6	157312056	157314388	10	gain	AAAAAABBBB	5.39618	germline	1	0.0832679364785563	0.27004287275304
6	158673944	158697264	2	neutral	AA	100	somatic	0	0.0233200288237709	0.059097575002834
6	159291924	159315244	2	neutral	AA	36.3786	somatic	0	0.0254107963177411	0.0338626185219046
6	165310816	165317812	1	loss	A	-1	germline	1	0.00589584168905287	0.0081632506054844
6	165956780	165961444	2	neutral	AA	100	somatic	0	0.530042051080196	0.794620212316603
7	9761752	9766416	1	loss	A	-1	germline	1	0.0143477964431701	0.0367525671689102
7	23998612	24000944	0	loss	-	-1	germline	1	0.0832696465626779	0.270045842833548
7	26097412	26106740	1	loss	A	-1	germline	1	0.00114335184159707	0.00141351043872184
7	39832892	39902852	2	neutral	AA	100	somatic	0	0.98473548260149	0.875549106611666
7	39902852	40035776	2	neutral	AA	37.5957	somatic	0	3.18558868679097e-08	4.3804025073868e-08
7	51457912	51607160	2	neutral	AA	20.3757	somatic	0	0.00128729849844139	6.59393234727634e-05
7	52717192	52892092	2	neutral	AA	100	somatic	0	0.0498090023335828	0.00523366994746877
7	57486132	57497792	3	gain	AAB	3.29086	germline	1	0.00010790107063073	9.11639316534263e-05
7	61044764	61056424	3	gain	-	-1	somatic	0	0.000107748371779805	9.0983824640456e-05
7	62297048	62378668	3	gain	AAB	0.578744	germline	1	1.01321934340895e-09	2.10108341835991e-09
7	62401988	62406652	5	gain	-	-1	germline	1	0.0143100158170478	0.0366372826019387
7	62436968	62455624	3	gain	AAB	3.54645	germline	1	7.03336639472182e-05	1.16652515136373e-05
7	65226040	65228372	0	loss	-	-1	germline	1	0.0832673664568378	0.270041882731512
7	65305328	65321652	2	neutral	AA	100	somatic	0	0.192062085060521	0.235487051645625
7	65797380	65823032	3	gain	AAB	0.170993	germline	1	9.40042970213071e-09	5.81569459257025e-10
7	73812464	73908076	2	neutral	AA	24.2575	germline	1	0.00061510141490774	0.000973965927214882
7	75043760	75570792	2	neutral	AA	54.5883	germline	1	1.93955406985452e-06	2.35322978614505e-06
7	77898128	77935440	2	neutral	AA	54.5678	somatic	0	0.0137898502348827	0.0217095544425823
7	86200048	86556844	2	neutral	AA	71.0168	somatic	0	8.40476038893465e-06	0.000423026345660826
7	88825880	88888844	2	neutral	AA	44.4613	somatic	0	0.255967780294398	0.0138426384039323
7	94735168	94751492	2	neutral	AA	100	somatic	0	0.435546853579571	0.433919206991485
7	97766768	97773764	1	loss	A	-1	germline	1	0.00549396583091454	0.00950742920220116
7	100949948	100956944	4	gain	AABB	24.7721	germline	1	0.0027019022010507	0.00496105188420481
7	100956944	100959276	15	gain	AAAAAAAAAAAAAAB	5.59275	germline	1	0.0832679364785563	0.27004287275304
7	100959276	100975600	3	gain	AAB	0.443608	germline	1	4.60823919196768e-06	1.67183797361581e-06
7	101264768	101446664	2	neutral	AA	3.56482	somatic	0	3.66499197512121e-09	7.34732386042936e-09
7	106101336	106103668	4	gain	AABB	19.5537	somatic	0	0.0832804777561229	0.270064653897131
7	109802220	109813880	1	loss	A	-1	germline	1	0.000280370526079624	0.000230379632959687
7	111047508	111252724	2	neutral	AA	100	somatic	0	0.0226812716164048	0.0434586558448486
7	119190852	119195516	0	loss	-	-1	germline	1	0.014315414098414	0.0366576039172877
7	120662344	120674004	1	loss	A	-1	germline	1	0.000408069078529156	0.000286301388505272
7	132438944	132462264	2	neutral	AA	100	somatic	0	0.224088386590384	0.103670972405243
7	134260236	134320868	2	neutral	AA	100	somatic	0	0.0056455123889848	0.016031214802576
7	143847088	143849420	4	gain	-	-1	germline	1	0.0832781974100355	0.270060693593732
7	152400864	152407860	11	gain	AAAAAAAAABB	11.6715	germline	1	0.00270027942295526	0.00495846657670207
7	154599940	154609268	1	loss	A	-1	germline	1	0.00114890002661974	0.00143655510814
7	156505184	156521508	1	loss	A	-1	germline	1	1.98372509228711e-05	7.51249491881545e-06
7	157223440	157265416	2	neutral	AA	54.5679	somatic	0	0.0831875851757738	0.181793820311871
7	158149244	158151576	4	gain	AAAA	28.1518	germline	1	0.0832776273314167	0.270059703524506
7	158594656	158596988	8	gain	AAAABBBB	100	somatic	0	0.0832719267190949	0.27004980297797
7	159291924	159331568	3	gain	AAB	5.09083	somatic	0	9.75407156564299e-07	2.28591506834519e-07
8	15918232	15929892	1	loss	A	-1	germline	1	0.000250260342064766	0.000280770828943511
8	25208920	25213584	0	loss	-	-1	germline	1	0.014307137467964	0.0366334903815813
8	39375820	39529732	1	loss	A	-1	germline	1	3.78906303840391e-38	0
8	43237612	43242276	13	gain	-	-1	germline	1	0.0143073173498182	0.0366337612430724
8	55909700	55912032	1	loss	A	-1	germline	1	0.124417135295289	0.33548183733788
8	55912032	55921360	2	neutral	AA	100	germline	1	0.194236401297154	0.234133694705977
8	61152036	61196344	2	neutral	AA	100	somatic	0	0.00418909715039971	0.039923509474893
8	64768968	64780628	2	neutral	AA	100	somatic	0	0.00509060611617036	0.00434979741758423
8	73003260	73073220	2	neutral	AA	54.5704	somatic	0	0.336699079780887	0.265261564261113
8	76962996	76969992	2	neutral	AA	100	somatic	0	0.416850246660593	0.870894299848276
8	81106960	81307512	2	neutral	AA	42.2778	somatic	0	0.012224768593516	0.0815680998786975
8	87503636	87538616	2	neutral	AA	100	somatic	0	0.0113464032571513	0.0557514342716083
8	94093868	94345724	2	neutral	AA	36.3786	somatic	0	0.00140270971546565	0.0132299056070564
8	94345724	94641888	2	neutral	AA	48.1056	somatic	0	3.88713621716101e-06	3.64748215753163e-06
8	111070828	111280708	2	neutral	AA	26.3546	somatic	0	0.000232552914777431	0.000221771573724494
8	111280708	111285372	1	loss	A	-1	germline	1	0.0144271096630606	0.0369873663584441
8	111285372	111586200	2	neutral	AA	100	somatic	0	0.00127604013036024	0.0118860381819945
8	115468980	115839768	2	neutral	AA	31.7912	germline	1	0.00134036847964488	0.000706864035585175
8	126037604	126051596	2	neutral	AA	100	somatic	0	0.0176612151672761	0.0500371252318719
8	126179856	126182188	0	loss	-	-1	germline	1	0.083265086401574	0.270037922671867
8	137963452	137993768	2	neutral	AA	100	somatic	0	0.100310480271347	0.260721422397213
8	139591188	139595852	3	gain	AAB	3.63383	germline	1	0.014314514260124	0.0366502871079842
8	142548164	142564488	2	neutral	AA	12.1262	somatic	0	0.0113976079195704	0.0693371345047402
8	144124596	144126928	6	gain	AAAABB	18.7425	germline	1	0.0832759171145278	0.270056733332726
8	144126928	144236532	2	neutral	AA	100	somatic	0	4.83742226679236e-05	0.000445312561484168
8	145069056	145071388	3	gain	-	-1	germline	1	0.0833820043744758	0.270240930316612
9	1303588	1874928	2	neutral	AA	22.7636	somatic	0	1.12090536884165e-12	1.2068985255631e-08
9	3061916	3071244	2	neutral	AA	100	germline	1	0.0725754279009233	0.221598316716795
9	4766608	4785264	2	neutral	AA	100	somatic	0	0.439457830417042	0.602186477087087
9	5979248	5995572	2	neutral	AA	100	somatic	0	0.111205498361238	0.0540298224157544
9	6699836	6711496	1	loss	A	-1	germline	1	0.000174588924086603	0.00025471824097778
9	13618880	13716824	2	neutral	AA	48.0299	somatic	0	0.135207421251754	0.211843707772073
9	23361976	23378300	1	loss	A	-1	germline	1	1.44800389542828e-05	7.94764342337828e-06
9	29091700	29098696	1	loss	A	-1	germline	1	0.0143161340049718	0.0366505580781356
9	32078992	32113972	2	neutral	AA	100	somatic	0	0.202872794146661	0.0770509806807882
9	37381960	37400616	2	neutral	AA	36.3859	somatic	0	0.111024388637288	0.191881073038048
9	39035348	39037680	6	gain	AAAABB	2.33606	germline	1	0.0832759171145278	0.270056733332726
9	40868300	40912608	4	gain	AABB	1.78305	germline	1	0.000107587656763876	9.08443483204069e-05
9	40912608	40914940	7	gain	-	-1	germline	1	0.0832747769857412	0.27005475321812
9	40921936	40924268	5	gain	AAABB	3.67946	germline	1	0.0832776273314167	0.270059703524506
9	40924268	40928932	7	gain	AAAAABB	2.08052	germline	1	0.0143091162780912	0.0366359281980978
9	42386432	42388764	6	gain	AAABBB	71.4146	germline	1	0.0832759171145278	0.270056733332726
9	69122812	69129808	1	loss	A	-1	germline	1	0.0191803550970249	0.0516331715838243
9	73362388	73374048	2	neutral	AA	100	somatic	0	0.810028545048441	0.73984335815276
9	73908076	73950052	2	neutral	AA	63.4291	somatic	0	0.726173587162575	0.618917170306156
9	77156552	77161216	3	gain	AAB	15.4241	somatic	0	0.0143159540253385	0.0366500161395875
9	83002876	83058844	2	neutral	AA	54.5678	somatic	0	0.0271926157849299	0.0422525809958948
9	83350344	83378328	2	neutral	AA	100	somatic	0	0.0123068108718006	0.00704406679699421
9	86083448	86120760	2	neutral	AA	54.5678	somatic	0	0.0502423762662072	0.0153591343983124
9	97239736	97274716	2	neutral	AA	100	somatic	0	0.291818996627557	0.210320357836434
9	97829732	97871708	2	neutral	AA	100	germline	1	0.107970972232568	0.273844309074962
9	124342240	124435520	2	neutral	AA	35.0964	somatic	0	0.729245152578024	0.903749076300875
9	128588812	128602804	2	neutral	AA	54.5678	somatic	0	0.47343674741286	0.789601409025528
9	128649444	128651776	0	loss	-	-1	somatic	0	0.0832673664568378	0.270041882731512
9	128672764	128803356	2	neutral	AA	29.5189	somatic	0	2.46159694488845e-05	5.94054143902012e-05
9	129423668	129470308	2	neutral	AA	0.194822	somatic	0	0.825001118837552	0.790838761720082
9	137326816	137329148	5	gain	AAABB	9.92	germline	1	0.0832770572559592	0.27005871345793
10	4666332	4668664	0	loss	-	-1	somatic	0	0.0832702165970405	0.270046832865681
10	18837896	18856552	2	neutral	AA	100	somatic	0	0.244762421746273	0.105999281766128
10	19598128	19654096	2	neutral	AA	36.5172	somatic	0	0.444228483787921	0.829055556507557
10	25194928	25241568	2	neutral	AA	100	somatic	0	0.583287837671924	0.906720982586834
10	26568476	26594128	2	neutral	AA	0.823366	somatic	0	0.0060242117161714	0.0801622331477486
10	26636104	26659424	2	neutral	AA	0.992925	somatic	0	0.256120949010519	0.835371827126485
10	26901952	26934600	2	neutral	AA	5.27695	somatic	0	0.161961661772819	0.170749102015103
10	26936932	26941596	3	gain	AAA	4.00241	somatic	0	0.014313704448323	0.0366445971397289
10	29143004	29187312	2	neutral	AA	100	somatic	0	0.395576713733211	0.73812516019243
10	36626392	37148760	2	neutral	AA	2.62023	somatic	0	0.0518512616950472	0.0971606107776497
10	38484996	38491992	3	gain	AAA	4.81181	germline	1	0.00270165626831423	0.00495989659414398
10	38491992	38524640	3	gain	AAA	0.964047	germline	1	5.09077429986931e-10	2.44175601959995e-09
10	38524640	38526972	4	gain	AABB	51.8817	germline	1	0.0832776273314167	0.270059703524506
10	38526972	38529304	20	gain	AAAAAAAAAAAAAAAAAABB	4.62582	germline	1	0.0832673664568378	0.270041882731505
10	38573612	38578276	3	gain	AAA	16.3092	germline	1	0.0224109894146672	0.0618475871982131
10	38578276	38580608	6	gain	AAAABB	100	germline	1	0.0832759171145278	0.270056733332726
10	38580608	38582940	4	gain	AABB	100	germline	1	0.0832816179481343	0.270066634064727
10	38582940	38802148	2	neutral	AA	1.02969	somatic	0	9.26429418234683e-07	6.6818384858558e-05
10	38802148	38816140	1	loss	A	-1	germline	1	0.000590494527864627	0.000345416614297767
10	38816140	38834796	2	neutral	AA	3.6433	somatic	0	2.7249281761249e-05	0.000243707992069186
10	41857068	41899044	21	gain	AAAAAAAAAAAAAABBBBBBB	2.41815	germline	1	4.59399031962803e-06	1.66342330099045e-06
10	42300148	42321136	3	gain	AAB	1.2426	germline	1	2.31589009839154e-07	5.78168208864582e-08
10	42321136	42323468	2	neutral	AA	100	somatic	0	0.106517801808376	0.308339132745812
10	46514072	46560712	6	gain	AAAABB	0.439391	germline	1	2.00962060673771e-13	4.44089209850063e-16
10	47327940	48183784	2	neutral	AA	1.84344	germline	1	3.55684076764797e-06	5.0555146144271e-05
10	50886572	50891236	2	neutral	AA	100	germline	1	0.241823351974348	0.312542764686868
10	51471904	51516212	2	neutral	AA	100	somatic	0	0.340134779221767	0.271252494434195
10	56364440	56460052	2	neutral	AA	27.4499	somatic	0	0.00149922492741128	0.01285740409366
10	67310848	67341164	2	neutral	AA	100	somatic	0	0.028376721908872	0.0389919981584788
10	67725944	67728276	0	loss	-	-1	germline	1	0.0832724967661019	0.270050793020708
10	69521584	69530912	1	loss	A	-1	germline	1	0.000726287578795126	0.000913920003835167
10	72709428	72842352	2	neutral	AA	100	somatic	0	0.000765885654618662	0.00235130454996957
10	85400172	85404836	2	neutral	AA	100	somatic	0	0.806718488413611	0.79944300083187
10	98673916	98729884	2	neutral	AA	27.2842	somatic	0	0.930937797785671	0.460036159144818
10	111387980	111425292	2	neutral	AA	40.4008	somatic	0	0.0364887769299797	0.0358599322183963
10	113778280	113820256	2	neutral	AA	39.0882	somatic	0	0.739676173214156	0.590493909026918
10	116987112	117047744	2	neutral	AA	54.5873	somatic	0	0.246424407096237	0.221372443577493
10	117752008	117814972	2	neutral	AA	54.6773	somatic	0	0.0170348668892322	0.0844262929699571
10	125778752	125785748	2	neutral	AA	100	somatic	0	0.129415703192053	0.424552796097443
10	127247912	127254908	2	neutral	AA	100	somatic	0	0.233690351428801	0.226377560154377
10	128462884	128465216	4	gain	AABB	19.9001	germline	1	0.0832776273314167	0.270059703524506
10	129969356	130004336	2	neutral	AA	36.384	somatic	0	0.9004220096163	0.853165227660002
10	132364320	132366652	4	gain	AAAB	13.4512	germline	1	0.0832776273314167	0.270059703524506
10	132756096	132767756	2	neutral	AA	26.7496	germline	1	0.267705909922826	0.521084852950057
11	2185084	2196744	2	neutral	AA	22.1752	germline	1	0.821554502883353	0.92287302215433
11	18924180	18940504	6	gain	AAAABB	3.3085	germline	1	4.59657062374713e-06	1.66402606793792e-06
11	23359644	23366640	2	neutral	AA	100	somatic	0	0.833392555993044	0.904921558537026
11	25414136	25421132	2	neutral	AA	100	somatic	0	0.232716757551717	0.252856383860371
11	26545156	26554484	2	neutral	AA	54.5678	germline	1	0.910504895758912	0.842627109300494
11	28984428	28991424	0	loss	-	-1	germline	1	0.0147342986127345	0.0379238158767526
11	30698448	30726432	2	neutral	AA	100	somatic	0	0.886750735977929	0.61203861303479
11	34007556	34014552	2	neutral	AA	100	somatic	0	0.110784427107079	0.111284591037657
11	34861068	35007984	2	neutral	AA	46.2892	somatic	0	0.1323836938055	0.0218925860832095
11	35220196	35285492	2	neutral	AA	6.31278	somatic	0	0.0882344577100932	0.231402352234483
11	36402520	36444496	2	neutral	AA	100	somatic	0	0.0230652020435377	0.0895003650566518
11	37962628	37988280	2	neutral	AA	62.1335	somatic	0	0.635060702212706	0.140438631850054
11	38107212	38258792	2	neutral	AA	55.6297	somatic	0	0.0383710010430879	0.185998419707349
11	39716292	39776924	2	neutral	AA	18.1893	somatic	0	0.278548426508797	0.306486189497046
11	43815948	43834604	2	neutral	AA	54.5887	somatic	0	0.495106214182485	0.283406952151727
11	46059332	46353164	2	neutral	AA	36.3916	somatic	0	5.20965425802471e-05	1.94029235857096e-05
11	47085412	47766356	2	neutral	AA	21.8531	somatic	0	1.15074290868443e-27	0
11	47766356	48941684	2	neutral	AA	0.671392	somatic	0	0.0258368632779383	0.0427261588489104
11	50683688	50821276	2	neutral	AA	7.27756	germline	1	0.427219716377471	0.380642374975727
11	55592548	55681164	1	loss	A	-1	germline	1	6.26756059193403e-20	0
11	59281772	59293432	2	neutral	AA	54.5685	somatic	0	0.0601340958656374	0.0741904904659793
11	63588976	63801188	2	neutral	AA	22.2459	somatic	0	7.10189571144927e-16	6.66133814775094e-16
11	64589404	64731656	2	neutral	AA	100	somatic	0	0.00824855050574342	0.0327520653334856
11	67634996	67641992	2	neutral	AA	100	somatic	0	0.507235540178288	0.85913000019029
11	69689488	69694152	2	neutral	AA	100	somatic	0	0.315063840225478	0.483824802812883
11	70895132	70923116	2	neutral	AA	100	somatic	0	0.850499790049903	0.738560161415968
11	71123668	71156316	2	neutral	AA	14.156	somatic	0	0.262667114490337	0.567101205695427
11	71480464	71527104	2	neutral	AA	9.39861	germline	1	0.145903032033089	0.0859241665960794
11	86176728	86188388	1	loss	A	-1	germline	1	0.000253476496064469	0.000274038764189966
11	91073928	91106576	2	neutral	AA	36.9545	somatic	0	0.324297132728593	0.414191197659168
11	94917064	94940384	2	neutral	AA	100	germline	1	0.00374800688135963	0.0239031550584912
11	95716940	95870852	2	neutral	AA	54.5678	germline	1	0.1172687239282	0.0582054223430359
11	98058268	98095580	2	neutral	AA	100	somatic	0	0.294916187421993	0.672263180663531
11	98319452	98363760	2	neutral	AA	100	somatic	0	0.946840056692603	0.693412073881918
11	120326536	120454796	2	neutral	AA	41.6063	somatic	0	0.738298761922849	0.765825450289801
11	120816256	120928192	2	neutral	AA	100	somatic	0	7.50456209674738e-06	0.000429324066659298
11	121940280	122021900	2	neutral	AA	36.5778	somatic	0	0.302196054713347	0.448444351648263
11	123705604	123745248	2	neutral	AA	54.5679	germline	1	0.26790441946217	0.691959192588968
11	127567396	127597712	2	neutral	AA	100	somatic	0	0.00995972825575128	0.0651092212832131
11	130596664	130668956	2	neutral	AA	100	somatic	0	0.00248662880051712	0.0223120366530331
11	131286936	131293932	2	neutral	AA	100	germline	1	0.237314534412351	0.310768447539403
11	133325104	133402060	2	neutral	AA	18.0546	somatic	0	0.000598568018573158	0.0115057244081873
11	135055448	135076436	3	gain	-	-1	somatic	0	1.00967893506315e-06	2.51154774533191e-07
12	757900	764896	1	loss	A	-1	germline	1	0.0028963669775135	0.00550457126531656
12	2255044	2257376	7	gain	-	-1	germline	1	0.0832747769857412	0.27005475321812
12	6144820	6151816	1	loss	A	-1	germline	1	0.0049184659681916	0.00898564821692471
12	12378256	12389916	1	loss	A	-1	germline	1	0.000126855216972613	0.000119581846368066
12	33233332	33242660	1	loss	A	-1	germline	1	0.000984221064168144	0.00123195996475811
12	37596504	37748084	2	neutral	AA	3.9238	germline	1	0.613112593489091	0.559018489937332
12	39793248	39807240	2	neutral	AA	22.442	somatic	0	0.538857574974015	0.352085890045617
12	41462960	41467624	2	neutral	AA	100	somatic	0	0.552501696455593	0.751644144641639
12	45508980	45515976	1	loss	A	-1	germline	1	0.00460860175941197	0.00926340579836882
12	59533628	59547620	2	neutral	AA	4.17066	somatic	0	0.0187641464069338	0.0389461413131124
12	64629048	64643040	2	neutral	AA	54.5678	somatic	0	0.0395941160510495	0.105337061210257
12	79761396	79768392	4	gain	-	-1	germline	1	0.00270104972168419	0.00495912653778297
12	80169496	80190484	2	neutral	AA	100	somatic	0	0.676457198020463	0.358123272818807
12	80808464	80815460	2	neutral	AA	100	somatic	0	0.94879539929082	0.989513857194435
12	83194100	83254732	2	neutral	AA	36.3786	somatic	0	0.352533177970339	0.419509146838794
12	90092156	90096820	1	loss	A	-1	germline	1	0.0181830335277794	0.0485165036903962
12	92111668	92118664	2	neutral	AA	54.5678	somatic	0	0.715451151354669	0.654419434146222
12	93277668	93293992	2	neutral	AA	100	somatic	0	0.0755665472741629	0.130671663298716
12	93932960	93958612	2	neutral	AA	54.5678	somatic	0	0.0223165241729332	0.00452305220011184
12	95723936	95730932	2	neutral	AA	54.5873	somatic	0	0.556285709235874	0.424477199572164
12	118705796	118731448	2	neutral	AA	8.61806	germline	1	0.0975590138978604	0.143230539386775
12	119314448	119333104	2	neutral	AA	27.2844	somatic	0	0.282897857670782	0.277835508361556
12	129635880	129670860	2	neutral	AA	52.4044	somatic	0	0.826484408370464	0.94769927400365
12	130197892	130242200	2	neutral	AA	100	somatic	0	0.0740476016757541	0.308169493706797
13	19243664	19322952	2	neutral	AA	100	somatic	0	0.226586729148848	0.197250807478274
13	22018744	22023408	1	loss	A	-1	germline	1	0.0161415853151962	0.0422063761440871
13	23058816	23063480	1	loss	A	-1	germline	1	0.0154601350362996	0.0400940749999841
13	24056912	24059244	0	loss	-	-1	germline	1	0.0832724967661019	0.270050793020708
13	26475196	26477528	0	loss	-	-1	germline	1	0.0832816179481343	0.270066634064734
13	26561480	26577804	2	neutral	AA	100	somatic	0	0.901101520255569	0.835160773122579
13	27174796	27179460	2	neutral	AA	54.5678	somatic	0	0.166030482679812	0.248713940786715
13	29285256	29376204	2	neutral	AA	100	somatic	0	0.00306613418132114	0.0122573314450752
13	33231000	33366256	2	neutral	AA	100	somatic	0	0.00986323310298034	0.0167939076989897
13	34774784	34795772	2	neutral	AA	100	somatic	0	0.453436680573345	0.583107837085553
13	39399140	39413132	2	neutral	AA	100	somatic	0	0.35780834132953	0.493029851018199
13	39755936	39795580	2	neutral	AA	69.0833	somatic	0	0.906813842826796	0.8321516548865
13	45422696	45436688	1	loss	A	-1	somatic	0	0.000195498595826235	0.000176704961907026
13	49137572	49144568	2	neutral	AA	54.5679	somatic	0	0.419762188368583	0.615843600409283
13	50494796	50501792	1	loss	A	-1	germline	1	0.00547615336532347	0.00960073154304641
13	57178308	57215620	1	loss	A	-1	germline	1	6.56074542072004e-11	7.94919685631612e-13
13	57947868	57982848	2	neutral	AA	100	germline	1	0.0162520341923186	0.0176418427973558
13	58773396	58848020	2	neutral	AA	57.1973	somatic	0	0.206534030568155	0.395754129043225
13	61709384	61744364	2	neutral	AA	100	somatic	0	0.628190859681135	0.48456332339147
13	62401988	62476612	2	neutral	AA	31.5286	somatic	0	0.212975116590812	0.164780617906349
13	63029296	63064276	3	gain	AAB	0.354169	germline	1	3.4673623836624e-09	8.34002955585333e-09
13	63064276	63068940	4	gain	AABB	0.858251	germline	1	0.0143116351128767	0.0366421588185128
13	68670404	68693724	1	loss	A	-1	germline	1	2.22788329846577e-07	3.26736185884968e-08
13	72271012	72273344	0	loss	-	-1	germline	1	0.0832833282598611	0.270069604336
13	78455476	78460140	2	neutral	AA	100	somatic	0	0.527947745996728	0.893837106920677
13	81167592	81211900	2	neutral	AA	18.2221	somatic	0	0.824554119688407	0.90052702150771
13	81801896	81832212	2	neutral	AA	36.3786	somatic	0	0.175302666295752	0.55726030869587
13	86113764	86141748	2	neutral	AA	54.5678	somatic	0	0.199506956050794	0.259728081064994
13	90159784	90169112	2	neutral	AA	100	somatic	0	0.353287533767043	0.682414569552814
13	94574260	94585920	2	neutral	AA	100	somatic	0	0.899916962595391	0.999608714764239
13	98601624	98606288	1	loss	A	-1	germline	1	0.0158913055318609	0.0414142152983487
13	103680720	103690048	2	neutral	AA	54.5678	somatic	0	0.872134251893541	0.951731552093828
13	108006580	108011244	2	neutral	AA	100	germline	1	0.630220632949228	0.953559873391774
13	108549936	108566260	2	neutral	AA	100	somatic	0	0.181801675780568	0.0932255684636581
13	109216888	109219220	1	loss	A	-1	germline	1	0.0834299506179833	0.270324146099206
13	112150544	112178528	2	neutral	AA	55.647	somatic	0	0.00139425487384985	0.00472158302383052
13	112924768	112955084	2	neutral	AA	22.9656	germline	1	0.0229494112598125	0.0393347110903545
13	113293224	113335200	2	neutral	AA	10.8458	somatic	0	0.845023715783084	0.833702223023086
14	0	16093132	4	gain	AAAB	-1	germline	1	NA	NA
14	16093132	16095464	6	gain	-	-1	germline	1	0.083275347048554	0.270055743274098
14	16095464	18488096	4	gain	AAAB	-1	germline	1	NA	NA
14	18490428	18660664	4	gain	AAAB	-1	germline	1	NA	NA
14	18660664	18662996	5	gain	AAABB	21.4419	germline	1	0.0832759171145278	0.270056733332726
14	18662996	18681652	4	gain	AAAB	-1	germline	1	NA	NA
14	18681652	18695644	3	gain	AAB	6.4881	germline	1	0.000543703616924094	0.000703544021200764
14	18695644	19728720	4	gain	AAAB	-1	germline	1	NA	NA
14	19728720	19880300	4	gain	AAAB	1.56931	germline	1	4.52931883661603e-16	0
14	19880300	19957256	4	gain	AABB	0.450839	germline	1	2.26845988000478e-19	0
14	21484716	21487048	0	loss	-	-1	germline	1	0.0832759171145278	0.270056733332732
14	22447832	22450164	2	neutral	AA	100	somatic	0	0.331263693057849	0.576231978027263
14	24943072	24957064	2	neutral	AA	100	somatic	0	0.807865811011861	0.466770386597651
14	26381916	26409900	2	neutral	AA	94.9842	somatic	0	0.227604518792003	0.330954233806866
14	27366020	27398668	2	neutral	AA	100	somatic	0	0.313437849338371	0.22391084804799
14	27519932	27566572	2	neutral	AA	100	somatic	0	0.5241012303518	0.822535878309714
14	28615972	28648620	2	neutral	AA	48.5131	somatic	0	0.850047356263263	0.989586742399403
14	29569760	29597744	2	neutral	AA	100	somatic	0	0.661403670162672	0.385938504526155
14	31377060	31379392	2	neutral	AA	100	somatic	0	0.182748447053716	0.414330654177746
14	31715200	31731524	2	neutral	AA	100	somatic	0	0.461891645808316	0.140285779827855
14	34348028	34350360	0	loss	-	-1	germline	1	0.0832816179481343	0.270066634064734
14	35136244	35145572	1	loss	A	-1	germline	1	0.000592804461852967	0.000728159787311111
14	37300340	37302672	1	loss	A	-1	germline	1	0.0832998627401312	0.270098318187622
14	37407612	37409944	2	neutral	AA	100	somatic	0	0.672644665482541	0.833955568623382
14	41141144	41201776	1	loss	A	-1	germline	1	3.81327198783371e-15	0
14	44699776	44716100	2	neutral	AA	57.1973	somatic	0	0.946377035289825	0.841997260309199
14	45777160	45781824	2	neutral	AA	54.5682	somatic	0	0.850820971095087	0.924779126194022
14	49776540	49790532	2	neutral	AA	100	somatic	0	0.0354202106567577	0.0306241148997141
14	51441588	51446252	2	neutral	AA	100	somatic	0	0.662746782007798	0.934266907584768
14	52528300	52530632	1	loss	A	-1	somatic	0	0.0833608922773891	0.270204281677301
14	53402800	53573036	2	neutral	AA	100	somatic	0	0.000149701839374167	0.00790366142372811
14	54881288	54897612	2	neutral	AA	54.8448	germline	1	0.262511196046333	0.31107863231832
14	58290672	58313992	2	neutral	AA	54.5681	somatic	0	0.300959454627711	0.345894800645782
14	63551664	63556328	2	neutral	AA	54.5678	somatic	0	0.205964077112466	0.313388792528462
14	64535768	64538100	2	neutral	AA	100	somatic	0	0.598735903626844	0.789076979414514
14	65237700	65258688	2	neutral	AA	100	somatic	0	0.542275488020058	0.632649103074318
14	72047140	72054136	2	neutral	AA	54.6067	germline	1	0.873998488382071	0.991241029486467
14	72800376	72837688	2	neutral	AA	15.6993	somatic	0	0.592891090200115	0.391849992000381
14	73437012	73439344	2	neutral	AA	100	somatic	0	0.174285423417574	0.403621451203372
14	79255352	79411596	2	neutral	AA	100	somatic	0	0.847129940118486	0.355858510209636
14	79647128	79649460	1	loss	A	-1	germline	1	0.0833375028489316	0.270163675259828
14	79808036	79922304	2	neutral	AA	25.6377	somatic	0	0.102728109455695	0.221777860261961
14	82035096	82037428	0	loss	-	-1	germline	1	0.0832702165970405	0.270046832865681
14	82674064	82676396	1	loss	A	-1	somatic	0	0.0834042623541173	0.270279563890442
14	82732364	82755684	2	neutral	AA	29.3287	somatic	0	0.671560897510582	0.90396281239661
14	86414592	86416924	2	neutral	AA	100	somatic	0	0.168712615159797	0.396466354520778
14	87041900	87055892	2	neutral	AA	100	somatic	0	0.418503426102165	0.477339626180235
14	90628516	90633180	2	neutral	AA	100	somatic	0	0.971165910281625	0.803790932289026
14	94429676	94469320	2	neutral	AA	70.3736	somatic	0	0.0123742631302083	0.0131955202560076
14	95413780	95420776	2	neutral	AA	54.7239	somatic	0	0.939440392949226	0.997561662738579
14	96227648	96281284	2	neutral	AA	100	somatic	0	0.0928973205487306	0.120292118307456
14	96281284	96330256	2	neutral	AA	27.3645	somatic	0	0.0449711105426328	0.0764707263523626
14	99926200	99928532	4	gain	AAAB	22.8869	germline	1	0.0832799076648591	0.270063663817307
14	100371612	100380940	2	neutral	AA	100	somatic	0	0.922390789756891	0.9616340153816
14	101113188	101131844	2	neutral	AA	36.3786	somatic	0	0.423223634399587	0.338697326762852
14	103774000	103871944	2	neutral	AA	36.5665	somatic	0	2.20596015430313e-09	7.7097590533981e-09
14	104058504	104063168	1	loss	A	-1	germline	1	0.0211570920236151	0.0469216238967918
14	104240400	104294036	2	neutral	AA	26.5287	somatic	0	0.738503819732479	0.991275150382091
14	104888696	104921344	2	neutral	AA	100	somatic	0	0.72886269848394	0.254153303105663
14	105184860	105187192	1	loss	A	-1	germline	1	0.113706907846193	0.319450369193697
14	105348100	105357428	2	neutral	AA	12.127	somatic	0	0.295504135402203	0.549994067008047
14	106866232	106880224	3	gain	AAB	11.5793	somatic	0	2.34216112834074e-05	1.41441091031647e-05
15	0	17079568	3	gain	-	-1	germline	1	NA	NA
15	17079568	17081900	10	gain	-	-1	germline	1	0.0832690765314763	0.270044852804059
15	17081900	20379348	3	gain	-	-1	germline	1	0.000667037494060706	0.000156017563328614
15	20379348	20381680	1	loss	A	-1	germline	1	0.0839855219176976	0.271287438429646
15	20381680	20673180	3	gain	-	-1	germline	1	2.05360180094358e-11	2.18269846641306e-13
15	40511504	40574468	2	neutral	AA	100	somatic	0	0.857183013728677	0.893893733590992
15	58302332	58323320	2	neutral	AA	100	germline	1	0.864838723996007	0.92269580123067
15	70636280	70668928	2	neutral	AA	100	somatic	0	0.42598394462155	0.133826312412991
15	71415168	71422164	1	loss	A	-1	germline	1	0.0145356051761886	0.0372394104777913
15	76592208	76601536	1	loss	A	-1	germline	1	0.00409568290406869	0.00739811921591227
15	81689960	81743596	2	neutral	AA	36.5691	somatic	0	0.0933519705002191	0.198433660665386
15	85966848	85978508	1	loss	A	-1	germline	1	0.00149899203547221	0.00163403994658595
15	88954140	88972796	2	neutral	AA	38.0069	somatic	0	0.00324250836898486	0.00938260158754156
15	91437720	91440052	0	loss	-	-1	germline	1	0.0832799076648591	0.270063663817313
15	93452568	93466560	2	neutral	AA	54.5681	somatic	0	0.732578435342179	0.824754945885153
16	594660	606320	2	neutral	AA	100	somatic	0	0.968137204023316	0.995573623722936
16	846516	848848	4	gain	AABB	18.3308	somatic	0	0.0832781974100355	0.270060693593732
16	1737340	1797972	2	neutral	AA	19.4489	somatic	0	0.742111136228727	0.76610289539057
16	3092232	3094564	2	neutral	AA	100	somatic	0	0.147175744439555	0.367760705343027
16	6235768	6259088	2	neutral	AA	27.4577	somatic	0	0.337283447375142	0.286700105920214
16	6531932	6534264	2	neutral	AA	100	somatic	0	0.532331841241052	0.743807792428471
16	9246380	9251044	2	neutral	AA	100	somatic	0	0.328813355935832	0.782351033696885
16	10351748	10354080	2	neutral	AA	100	somatic	0	0.149638730370911	0.371126200898908
16	10829808	10860124	2	neutral	AA	100	somatic	0	0.448466566947845	0.202643064354224
16	11457116	11471108	2	neutral	AA	100	somatic	0	0.273043480252416	0.298827937571819
16	13632872	13642200	2	neutral	AA	100	somatic	0	0.355434018554917	0.453634340227066
16	19383584	19425560	2	neutral	AA	54.5678	somatic	0	0.16245666988481	0.217823688042251
16	19497852	19595796	2	neutral	AA	100	somatic	0	4.27502740515818e-05	0.000241414692995656
16	21130252	21144244	2	neutral	AA	27.8398	somatic	0	0.0151657062462284	0.0239351162296781
16	21202544	21223532	2	neutral	AA	100	somatic	0	0.382604327029177	0.22642906150446
16	21557008	21582660	3	gain	AAB	2.96985	germline	1	9.42723801998045e-09	5.83676107446252e-10
16	22394196	22424512	2	neutral	AA	100	somatic	0	0.00255629604967902	0.00180616745282125
16	22613404	22699688	3	gain	AAB	1.33878	germline	1	1.38031517084265e-24	0
16	23168420	23173084	2	neutral	AA	54.6578	somatic	0	0.147117726343471	0.214156590848793
16	24688884	24728528	2	neutral	AA	54.5678	somatic	0	1.44937967834231e-06	5.7854491297693e-07
16	24959396	24961728	1	loss	A	-1	somatic	0	0.124794604842444	0.336036787936698
16	25176272	25180936	2	neutral	AA	54.5683	somatic	0	0.82895854705765	0.977629317489504
16	25327852	25332516	1	loss	A	-1	germline	1	0.0143352231688127	0.0366939358846381
16	27867400	27872064	2	neutral	AA	36.3787	somatic	0	0.37537649981172	0.707533813449732
16	28608976	28611308	4	gain	AAAB	20.8573	germline	1	0.0832787674918155	0.270061683665607
16	29851932	29863592	2	neutral	AA	54.5678	somatic	0	0.806621284334209	0.748189083148363
16	29900904	29903236	2	neutral	AA	100	somatic	0	0.874894227737593	0.927313116343123
16	31129868	31136864	2	neutral	AA	100	somatic	0	0.713122919275425	0.985859302102214
16	34061192	34065856	9	gain	AAAAAABBB	1.75675	germline	1	0.0143075871763403	0.0366345738380648
16	34075184	34084512	2	neutral	AA	28.7121	germline	1	0.00320983747133516	0.00571922495664312
16	34084512	34086844	8	gain	AAAAAAAA	11.7868	germline	1	0.0832724967661019	0.270050793020701
16	34096172	34098504	9	gain	AAAAAAAAA	6.00828	germline	1	0.0832702165970405	0.270046832865675
16	34098504	34100836	4	gain	AABB	8.78309	germline	1	0.0832827581527909	0.270068614242922
16	35231856	35521024	3	gain	AAB	4.1206	germline	1	1.24786531495206e-77	0
16	35521024	35523356	3	gain	-	-1	germline	1	0.0833010031471242	0.27010029853538
16	35987424	36006080	2	neutral	AA	5.28307	somatic	0	0.0836101172925672	0.15135962478824
16	36034064	36090032	2	neutral	AA	15.2573	somatic	0	0.867754437289911	0.293257964708612
16	36122680	36127344	4	gain	-	-1	germline	1	0.0143110053675152	0.0366402624445979
16	48995320	49016308	2	neutral	AA	36.3789	somatic	0	0.713236728128561	0.526977992218476
16	50560092	50576416	2	neutral	AA	100	somatic	0	0.511183387067425	0.777400735216194
16	54407892	54410224	2	neutral	AA	100	somatic	0	0.218146847064999	0.45703420025167
16	58612488	58617152	1	loss	A	-1	germline	1	0.0143196440067852	0.0366524549182613
16	60883856	60886188	1	loss	A	-1	somatic	0	0.108135370750786	0.310862595435864
16	61016780	61021444	2	neutral	AA	36.3787	somatic	0	0.90326907981465	0.910864433118536
16	68040764	68087404	2	neutral	AA	54.5679	somatic	0	0.0151638204926094	0.0420116936328984
16	68544476	68551472	2	neutral	AA	100	somatic	0	0.0560446862550761	0.092089056589477
16	68556136	68614436	2	neutral	AA	100	somatic	0	0.000706562577334738	0.00189057687893379
16	70151224	70162884	3	gain	AAB	2.2252	germline	1	0.000107913751905707	9.12886897063148e-05
16	71545760	71550424	2	neutral	AA	100	somatic	0	0.156944394855573	0.428918683053321
16	75008780	75020440	2	neutral	AA	54.5678	somatic	0	0.0877225949340535	0.107104082751238
16	78984840	78987172	2	neutral	AA	100	somatic	0	0.289116545507962	0.534405398600806
16	79315984	79322980	2	neutral	AA	100	somatic	0	0.295543605005502	0.447434235708692
16	79978272	79980604	2	neutral	AA	100	somatic	0	0.318409773803018	0.56376513029163
16	81053324	81055656	2	neutral	AA	100	somatic	0	0.528183244542432	0.740826168621451
16	86675776	86678108	2	neutral	AA	41.2053	somatic	0	0.704499657004959	0.851493068173775
16	87408024	87415020	2	neutral	AA	27.2841	somatic	0	0.132795881507156	0.24241579272769
16	87501304	87568932	2	neutral	AA	23.1799	somatic	0	0.155782710438031	0.130160370810079
16	88634656	88639320	2	neutral	AA	55.5916	somatic	0	0.279736867417692	0.354981499628679
17	12814340	12826000	2	neutral	AA	54.5678	somatic	0	0.539217534215697	0.690372144371397
17	13168804	13201452	2	neutral	AA	36.3786	somatic	0	0.787111146780682	0.574408321085052
17	14994760	15134680	2	neutral	AA	42.9619	somatic	0	0.12959562792556	0.135897090077708
17	20754800	20761796	1	loss	A	-1	somatic	0	0.00788785129125907	0.00980957977043384
17	21291160	21305152	4	gain	AABB	0.221408	germline	1	2.21105831845891e-05	1.22982413832684e-05
17	21675940	21855504	3	gain	-	-1	somatic	0	0.000119799724445242	3.75697350253335e-05
17	21855504	21857836	5	gain	-	-1	germline	1	0.0832759171145278	0.270056733332726
17	21967440	21981432	14	gain	-	-1	germline	1	0.00270009916926436	0.0049578616831033
17	22126016	22158664	5	gain	AAABB	0.299275	germline	1	4.24547734534524e-10	1.02327035733651e-11
17	26783020	26804008	3	gain	-	-1	germline	1	3.61288487902938e-07	4.76209418454054e-07
17	26808672	26829660	4	gain	-	-1	germline	1	9.82875913118622e-07	2.47158856825358e-07
17	26829660	26843652	3	gain	-	-1	somatic	0	0.000134942135142788	0.000487478895591975
17	26843652	26845984	1	loss	A	-1	somatic	0	0.0855245019413091	0.273940131819028
17	26845984	26878632	3	gain	-	-1	somatic	0	2.37445804578247e-07	1.33593690676559e-06
17	26936932	26939264	11	gain	AAAAAAABBBB	20.7047	germline	1	0.0832679364785563	0.27004287275304
17	31262792	31321092	2	neutral	AA	36.3861	somatic	0	1.54747075444569e-05	0.000242556116792803
17	31325756	31363068	2	neutral	AA	100	somatic	0	3.35150866771767e-06	1.03062584706493e-05
17	33102740	33119064	2	neutral	AA	100	somatic	0	0.384056788639663	0.785085155974775
17	34870396	34931028	2	neutral	AA	100	somatic	0	0.851785970795908	0.863025771529114
17	41432644	41439640	1	loss	A	-1	somatic	0	0.00572713843011571	0.00897260317185455
17	47689400	47703392	2	neutral	AA	100	germline	1	0.0330060246874972	0.11413950954505
17	49202868	49368440	2	neutral	AA	35.6315	somatic	0	7.5969726194543e-14	9.19375686692092e-13
17	49373104	49436068	2	neutral	AA	100	somatic	0	2.66870716325191e-07	1.04905657494214e-08
17	62306376	62371672	2	neutral	AA	38.3655	somatic	0	0.000815422161418979	0.000766508652901399
17	62765780	62793764	2	neutral	AA	54.573	somatic	0	0.000872625691009121	0.00287033089941091
17	64666360	64706004	2	neutral	AA	54.5678	somatic	0	3.47195216760185e-06	3.12266052704402e-06
17	80020248	80031908	2	neutral	AA	52.1116	somatic	0	0.136704038472137	0.317294040395107
18	5305300	5309964	1	loss	A	-1	germline	1	0.0293443657347341	0.0566522137942145
18	24938408	24940740	1	loss	A	-1	somatic	0	0.10327077340231	0.303213583688232
18	29593080	29597744	1	loss	A	-1	germline	1	0.0214951013320108	0.0522163554476267
18	41283396	41290392	1	loss	A	-1	germline	1	0.0238401335273163	0.062900823585991
18	47980900	47999556	2	neutral	AA	32.6109	somatic	0	0.516205020657975	0.789616772940732
18	49820848	49825512	2	neutral	AA	3.24393	somatic	0	0.776604018064432	0.988179375926576
18	51956960	52229804	2	neutral	AA	18.1993	somatic	0	9.17891912547823e-06	7.96452409813631e-05
18	52791816	52796480	2	neutral	AA	99.734	somatic	0	0.141305590180925	0.465698126049941
18	57395184	57397516	2	neutral	AA	100	somatic	0	0.774657952989549	0.886441769589477
18	59218808	59228136	2	neutral	AA	15.5996	somatic	0	0.805954706137859	0.925639746740129
18	62238748	62241080	2	neutral	AA	100	somatic	0	0.730442106150699	0.865024886673586
18	63472376	63474708	2	neutral	AA	36.3915	somatic	0	0.976245895676423	0.958194626973331
18	64379524	64384188	2	neutral	AA	100	somatic	0	0.0705412598975802	0.103403114871596
18	64545096	64547428	1	loss	A	-1	germline	1	0.0890041808832819	0.279866448768659
18	64717664	64738652	2	neutral	AA	54.5678	somatic	0	0.267494069246799	0.577217834954114
18	66422356	66522632	2	neutral	AA	36.3786	somatic	0	0.0728077697759648	0.278716663694027
18	67042668	67075316	2	neutral	AA	94.336	somatic	0	0.858521259403236	0.417672741787932
18	68390564	68427876	2	neutral	AA	100	somatic	0	0.626551976461606	0.792555887505405
18	69610200	69621860	2	neutral	AA	100	somatic	0	0.226778666845045	0.299575275537017
18	71760304	71774296	1	loss	A	-1	germline	1	6.12553684643644e-05	4.45529558895652e-05
18	72305992	72333976	2	neutral	AA	54.5782	somatic	0	0.991367688622441	0.94621170122018
18	74241552	74264872	2	neutral	AA	36.3873	somatic	0	0.884642116532233	0.959873474875703
18	74614672	74619336	3	gain	-	-1	somatic	0	0.0143445507963327	0.0366952921645396
18	74959808	74964472	2	neutral	AA	54.5678	somatic	0	0.92889033521686	0.811025237308414
18	78404172	78406504	2	neutral	AA	36.3915	somatic	0	0.9414352432337	0.948747800352348
18	79518868	79523532	1	loss	A	-1	germline	1	0.0292653821509735	0.0562631383389064
19	3819816	3875784	2	neutral	AA	47.6262	somatic	0	0.000272817643590065	0.00310093020454227
19	6706832	6718492	2	neutral	AA	36.7139	somatic	0	0.00549165272486522	0.00647302040691622
19	7448408	7450740	8	gain	AAAAABBB	6.05732	germline	1	0.0832724967661019	0.270050793020701
19	7450740	7453072	6	gain	AAAABB	12.4481	germline	1	0.083275347048554	0.270055743274098
19	8880256	8910572	2	neutral	AA	0.960586	germline	1	0.00960348370396436	0.0528855178521633
19	12583472	12585804	0	loss	-	-1	germline	1	0.0832673664568378	0.270041882731512
19	13840420	13854412	2	neutral	AA	54.5678	somatic	0	0.0229347032675522	0.012479887119652
19	14136584	14159904	2	neutral	AA	27.2973	somatic	0	0.25469190257559	0.259999451505641
19	15615072	15636060	2	neutral	AA	27.5358	somatic	0	0.0940633870665166	0.107092902890064
19	18975484	19017460	2	neutral	AA	100	somatic	0	0.00830180863205941	0.0579972803465579
19	23336324	23438932	2	neutral	AA	25.17	somatic	0	0.0149678013246882	0.0525990871592833
19	24329756	24388056	4	gain	AABB	0.349324	germline	1	4.72810218419274e-18	0
19	24388056	24404380	4	gain	AABB	1.87729	germline	1	0.000532390307958144	0.000671401652372228
19	27338036	27340368	5	gain	AAABB	4.17818	germline	1	0.083276487183663	0.270057723394003
19	27345032	27347364	4	gain	AAAB	72.5445	germline	1	0.0832776273314167	0.270059703524506
19	27347364	27380012	6	gain	AAAABB	0.149848	germline	1	1.97620429813887e-09	7.55965290366589e-11
19	27380012	27382344	2	neutral	AA	21.2088	germline	1	0.450416454775089	0.681384155930063
19	27382344	27389340	5	gain	AAABB	1.31223	germline	1	0.00270080385985186	0.00495868655478304
19	27389340	27391672	3	gain	AAB	4.80899	germline	1	0.0832844684834858	0.270071584530085
19	27391672	27398668	6	gain	AAAABB	0.535273	germline	1	0.00270078746979016	0.00495863155942411
19	27398668	27401000	3	gain	AAB	2.89042	germline	1	0.0835882173139816	0.270598692544903
19	28611308	28618304	2	neutral	AA	5.38129	somatic	0	0.422312903093427	0.33341875933623
19	32538396	32615352	2	neutral	AA	40.189	somatic	0	1.61219738943192e-05	0.000118543151341299
19	35579324	35586320	2	neutral	AA	54.5678	germline	1	0.0510745251021989	0.0977784438574358
19	35922128	35931456	2	neutral	AA	100	somatic	0	0.0489690120724164	0.112591031677083
19	36348884	36355880	1	loss	A	-1	somatic	0	0.00374676184662882	0.0078894885316857
19	46283204	46301860	2	neutral	AA	36.3786	somatic	0	0.00494997834643451	0.00637814934923486
19	49394092	49415080	2	neutral	AA	100	somatic	0	0.0845791913411301	0.0198565192459791
19	49622628	49624960	2	neutral	AA	54.5678	somatic	0	0.201762079679853	0.437648406618214
19	50592740	50609064	2	neutral	AA	25.6083	somatic	0	0.234623938107248	0.534660467545197
19	54011452	54018448	2	neutral	AA	36.3793	somatic	0	0.112808212038536	0.26441576951988
19	56117248	56121912	2	neutral	AA	100	somatic	0	0.675367862843247	0.949023298010564
20	60632	62964	8	gain	-	-1	germline	1	0.083271356675249	0.270048812937889
20	65296	67628	4	gain	-	-1	germline	1	0.0832776273314167	0.270059703524506
20	15768984	15785308	1	loss	A	-1	germline	1	1.75323652201346e-05	8.70590162471707e-06
20	22081708	22084040	0	loss	-	-1	germline	1	0.0832947310651645	0.270089406753831
20	26353932	26363260	1	loss	A	-1	germline	1	0.000930690879853655	0.00162746879872955
20	28781544	28786208	9	gain	-	-1	germline	1	0.0143079469520192	0.0366345738380648
20	28786208	28788540	5	gain	-	-1	germline	1	0.0832776273314167	0.270059703524506
20	28802532	28804864	4	gain	-	-1	germline	1	0.0832793375767567	0.270062673740132
20	28804864	28832848	8	gain	-	-1	germline	1	2.03602600874044e-07	3.04837856068829e-08
20	28870160	28872492	8	gain	-	-1	germline	1	0.0832719267190949	0.27004980297797
20	29264268	29376204	3	gain	-	-1	germline	1	2.76061401257605e-11	4.40758540776187e-14
20	29408852	29411184	5	gain	-	-1	germline	1	0.083276487183663	0.270057723394003
20	29891576	29893908	6	gain	-	-1	germline	1	0.0832759171145278	0.270056733332726
20	30938644	30943308	5	gain	-	-1	germline	1	0.0143097459501232	0.0366372826019387
20	31066904	31073900	49	gain	-	-1	germline	1	0.0143064179604972	0.0366321361003979
20	31164848	31167180	5	gain	-	-1	germline	1	0.0832759171145278	0.270056733332726
20	31183504	31188168	19	gain	-	-1	germline	1	0.0143068676489234	0.0366326778076138
20	31188168	31239472	3	gain	-	-1	germline	1	9.74253699663034e-07	2.34717634328696e-07
20	31239472	31244136	24	gain	-	-1	germline	1	0.0143068676489234	0.0366326778076138
20	37151092	37193068	2	neutral	AA	55.1768	somatic	0	0.00934151599156266	0.0294440048629058
20	37193068	37232712	2	neutral	AA	54.5678	somatic	0	0.0854217288431717	0.0581865723704977
20	38291440	39114636	2	neutral	AA	6.35468	somatic	0	0.0255099178244544	0.0228590762992749
20	39114636	40457868	2	neutral	AA	11.5605	germline	1	3.70315275663077e-12	3.46390216510173e-09
20	40558144	40970908	2	neutral	AA	27.2955	germline	1	3.65140954459044e-07	4.083438088609e-05
20	41705488	41712484	1	loss	A	-1	somatic	0	0.00967895009779995	0.0151721693596253
20	48344692	48386668	2	neutral	AA	36.3902	somatic	0	0.625784283446617	0.375927562098534
20	50676692	50697680	2	neutral	AA	100	germline	1	0.000389125458411587	0.00163910875384299
20	54030108	54041768	1	loss	A	-1	germline	1	0.000295194881725887	0.000231334532123428
20	56063612	56135904	2	neutral	AA	54.6384	somatic	0	0.970903710079391	0.495211274629787
20	56275824	56280488	2	neutral	AA	36.3786	somatic	0	0.571070315171329	0.620304565381864
20	57099020	57101352	2	neutral	AA	100	somatic	0	0.744391893170979	0.871977642614323
20	58516876	58547192	2	neutral	AA	22.7007	somatic	0	0.32876989542779	0.31131887008762
20	58827032	58831696	2	neutral	AA	12.3219	somatic	0	0.941200257899867	0.98330938775933
20	60312516	60405796	2	neutral	AA	10.8982	somatic	0	0.62697198601672	0.632232946690746
20	61543812	61567132	2	neutral	AA	20.0324	somatic	0	0.420524333321967	0.697619750906367
20	62374004	62383332	2	neutral	AA	100	somatic	0	0.327481995469431	0.482870467537944
20	62464952	62469616	2	neutral	AA	54.5678	somatic	0	0.144408858707621	0.469490225716062
20	62765780	62779772	2	neutral	AA	30.1989	somatic	0	0.744706033453629	0.828035050604828
20	63913124	63931780	2	neutral	AA	54.5678	somatic	0	0.9875247836158	0.987241646680327
20	64088024	64090356	4	gain	AAAB	22.8871	germline	1	0.0832838983700928	0.270070594431714
20	64092688	64095020	1	loss	A	-1	germline	1	0.0833323692957282	0.270154762252171
21	8989860	8996856	9	gain	AAAAAABBB	0.626761	germline	1	0.00270036136008603	0.00495852157038368
21	10414712	10417044	14	gain	AAAAAAAAAABBBB	29.8829	germline	1	0.0832679364785563	0.27004287275304
21	10652576	10661904	5	gain	AAAAA	8.50975	germline	1	0.000532257258314793	0.000671163414440068
21	10661904	10692220	4	gain	AAAB	1.01836	germline	1	1.97649676728641e-09	7.55998597057328e-11
21	10692220	10694552	52	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBBBB	100	germline	1	0.083266226422884	0.270039902696384
21	10694552	10703880	4	gain	AAAB	2.77319	germline	1	0.000532323779263066	0.000671232892315632
21	10703880	10708544	7	gain	AAAAAAB	45.3088	germline	1	0.0143092062297422	0.0366364699543771
21	10708544	10715540	4	gain	AAAB	4.53563	germline	1	0.00270091859282867	0.00495879654717835
21	10715540	10722536	6	gain	AAAABB	1.02142	germline	1	0.00270068913132856	0.00495863155942411
21	10722536	10738860	5	gain	AAAAB	3.79382	germline	1	4.59723587556712e-06	1.66415525970631e-06
21	10752852	10755184	12	gain	AAAAAAABBBBB	50.0034	germline	1	0.0832679364785563	0.27004287275304
21	16193408	16195740	2	neutral	AA	100	somatic	0	0.380296238175059	0.621734519733964
21	16969964	16974628	1	loss	A	-1	somatic	0	0.0212419045446953	0.0535841802376748
21	18448452	18649004	2	neutral	AA	27.3725	somatic	0	0.0218245785462933	0.109539741529408
21	20586896	20589228	1	loss	A	-1	somatic	0	0.0833449184335695	0.270176549983125
21	21787876	21797204	2	neutral	AA	36.4723	germline	1	0.82544970450586	0.941005876544207
21	23730432	23777072	2	neutral	AA	58.8583	somatic	0	0.00111902615804495	0.00782157864837862
21	24238808	24255132	2	neutral	AA	100	somatic	0	0.318714902019191	0.375706932108913
21	26290968	26300296	2	neutral	AA	36.9582	somatic	0	0.0213453998034042	0.0495649499973817
21	26855312	26878632	2	neutral	AA	43.4935	somatic	0	0.54287644744622	0.409057850903639
21	27079184	27086180	1	loss	A	-1	germline	1	0.00310371411299814	0.00562263156800313
21	28394432	28464392	2	neutral	AA	100	somatic	0	0.482534533693392	0.564946346218549
21	29712012	29735332	2	neutral	AA	54.5678	somatic	0	0.362222211668715	0.249669489895958
21	31178840	31211488	2	neutral	AA	54.5678	somatic	0	0.187548341030709	0.33325197735642
21	36626392	36649712	2	neutral	AA	54.5678	somatic	0	0.0616271478089272	0.0889700570126556
21	37155756	37172080	2	neutral	AA	54.568	somatic	0	0.374031651149808	0.172326109481234
21	39091316	39203252	2	neutral	AA	54.5678	somatic	0	0.769845610137024	0.450584260783665
21	39203252	39380484	2	neutral	AA	25.4273	somatic	0	2.20475561284812e-13	1.87042603627674e-11
21	39982140	40000796	2	neutral	AA	100	germline	1	0.126986018895548	0.241203661309432
21	41472288	41476952	1	loss	A	-1	somatic	0	0.0274954097218488	0.055248037171939
21	41805764	41808096	3	gain	AAB	80.9722	somatic	0	0.0833038542199368	0.270105249451161
21	42024972	42036632	2	neutral	AA	41.0829	somatic	0	0.08840152827277	0.282905767018522
21	42157896	42162560	2	neutral	AA	100	somatic	0	0.953326784315885	0.872192018089376
21	42568328	42598644	2	neutral	AA	40.4392	germline	1	0.521463393524668	0.370440283898941
21	42852832	42901804	1	loss	A	-1	germline	1	8.18552753980299e-15	1.11022302462516e-16
21	43274924	43279588	2	neutral	AA	39.1466	somatic	0	0.746722197360368	0.828218576895065
21	43279588	43281920	1	loss	A	-1	somatic	0	0.106226808995721	0.307878992997857
21	43281920	43300576	2	neutral	AA	19.3483	somatic	0	0.238222938302682	0.132011994419887
21	43335556	43337888	4	gain	AAAA	5.38122	germline	1	0.0832827581527909	0.270068614242922
21	45553288	45555620	1	loss	A	-1	somatic	0	0.0833209623167891	0.270134956336885
21	45795816	45798148	4	gain	AAAB	5.5362	germline	1	0.0832833282598611	0.270069604335993
22	21958112	22219296	3	gain	AAB	0.204108	somatic	0	8.8769063318952e-68	0
22	23037828	23042492	2	neutral	AA	100	somatic	0	0.81220601092637	0.983957423720359
22	29119684	29122016	4	gain	AAAB	16.6631	germline	1	0.0832787674918155	0.270061683665607
22	31948400	31950732	1	loss	A	-1	somatic	0	0.127884261744253	0.340548634751064
22	33765028	33797676	2	neutral	AA	54.5787	germline	1	0.419389793060873	0.846597435962804
22	34089176	34114828	2	neutral	AA	37.555	somatic	0	0.197833461428376	0.332351044985515
22	36749988	36752320	0	loss	-	-1	germline	1	0.0832816179481343	0.270066634064734
22	42519356	42554336	3	gain	AAB	8.84251	germline	1	5.94408890204064e-07	1.42630449462278e-06
22	42559000	42570660	1	loss	A	-1	germline	1	0.000991935894932536	0.00120610515685382
22	45327084	45329416	4	gain	AABB	17.314	germline	1	0.0832787674918155	0.270061683665607
22	49545672	49671600	2	neutral	AA	16.1845	germline	1	0.000374329926063376	0.00460610798600525
22	50630052	50644044	3	gain	AAB	3.38123	germline	1	0.000107818043040023	9.10898279925521e-05
X	5137396	5142060	0	loss	-	-1	germline	1	0.0148439909523446	0.0382553504329899
X	78268916	78271248	3	gain	-	-1	germline	1	0.0834516479198232	0.270361797476605
X	126776848	126779180	0	loss	-	-1	somatic	0	0.083266226422884	0.27003990269639
X	155192268	155194600	0	loss	-	-1	germline	1	0.0832656564106485	0.270038912682804
Y	3845468	3852464	2	gain	-	-1	germline	1	0.220324941123061	0.534080116425323
Y	10118548	10144200	2	gain	AB	2.48606	germline	1	0.120817905181455	0.0878890249412059
Y	10652576	10752852	2	gain	-	-1	germline	1	0.000187392295380844	0.00069930277829644
Y	10752852	10759848	4	gain	-	-1	germline	1	0.00270134478287876	0.00495940154533026
Y	10759848	10762180	7	gain	-	-1	germline	1	0.0832742069260897	0.270053763164791
Y	10762180	10794828	3	gain	-	-1	somatic	0	9.09556425682718e-10	9.62515400715347e-10
Y	10794828	10797160	7	gain	-	-1	germline	1	0.08327306681627	0.270051783066081
Y	10797160	10799492	3	gain	-	-1	germline	1	0.0832975819640852	0.270094357523879
Y	10799492	10801824	5	gain	-	-1	germline	1	0.0832770572559592	0.27005871345793
Y	10801824	10902100	2	gain	-	-1	somatic	0	0.800066657489229	0.0653629000388548
Y	10925420	10927752	5	gain	-	-1	germline	1	0.0832776273314167	0.270059703524506
Y	10927752	10955736	2	gain	-	-1	somatic	0	0.0453089343889897	0.140249113454668
Y	10958068	10974392	3	gain	-	-1	germline	1	0.000533249540331002	0.000672932233250045
Y	10974392	10986052	2	gain	-	-1	germline	1	0.75608721800081	0.658188861576087
Y	10986052	10988384	9	gain	-	-1	germline	1	0.0832702165970405	0.270046832865675
Y	10988384	10997712	2	gain	-	-1	germline	1	0.0253249423400375	0.0292725061790406
Y	10997712	11000044	10	gain	-	-1	germline	1	0.0832685065034358	0.270043862777225
Y	11000044	11011704	2	gain	-	-1	germline	1	0.571867067777824	0.544834393000143
Y	11014036	11016368	9	gain	-	-1	germline	1	0.0832702165970405	0.270046832865675
Y	11016368	11039688	2	gain	AA	8.42645	somatic	0	0.926526243248558	0.258539480124601
Y	11291544	11314864	26	gain	AAAAAAAAAAAAAAAABBBBBBBBBB	37.9235	somatic	0	2.03539526392079e-07	3.04817571183946e-08
Y	11314864	11321860	5	gain	AAABB	1.39536	germline	1	0.0143097459501232	0.0366372826019387
Y	11321860	11333520	9	gain	AAAAAABBB	1.09484	germline	1	0.00270037774778481	0.00495863155942411
Y	11529408	11534072	11	gain	AAAAAAAAAAB	2.76622	somatic	0	0.0143082167890155	0.0366364699543771
Y	11643676	11646008	5	gain	-	-1	somatic	0	0.0832776273314167	0.270059703524506
Y	11685652	11692648	4	gain	AAAB	36.8326	germline	1	0.00270303375514159	0.00496556537931525
Y	11692648	11715968	2	gain	AB	6.3945	somatic	0	1.55707284405743e-05	2.25294652307362e-05
Y	11715968	11718300	5	gain	AAAAA	7.2183	germline	1	0.0832776273314167	0.270059703524506
Y	11720632	11725296	21	gain	AAAAAAAAAAAAAABBBBBBB	100	germline	1	0.0143068676489234	0.0366326778076138
Y	11725296	11746284	2	gain	AA	15.7824	germline	1	0.636224615960577	0.10970149531435
Y	11746284	11748616	13	gain	AAAAAAAABBBBB	7.4457	germline	1	0.0832679364785563	0.27004287275304
Y	26636104	26654760	2	gain	AB	78.2601	somatic	0	0.041216206810098	0.0974027564406187
Y	56826176	56851828	13	gain	AAAAAAAAABBBB	2.25515	somatic	0	9.63770497258871e-07	2.25183540147889e-07
