chr	start	end	copy number	status	genotype	uncertainty	somatic/germline	precentageOfGermline	WilcoxonRankSumTestPvalue	KolmogorovSmirnovPvalue
1	819486	917412	2	neutral	AA	30.5493	germline	1	0.855507252535454	0.880524358181296
1	2839854	2865624	2	neutral	AA	4.07851	somatic	0	0.115405063738088	0.0627430325838212
1	3025398	3043437	2	neutral	AA	8.58398	somatic	0	0.736384429383603	0.801845882590175
1	5664246	5669400	2	neutral	AA	1.64692	somatic	0	0.332285256809214	0.714713593695248
1	5669400	5674554	3	gain	AAB	1.36114	somatic	0	0.0143150041315462	0.0366485683295046
1	11766582	11825853	2	neutral	AA	100	somatic	0	0.403820316768666	0.447742660181734
1	16611342	16637112	8	gain	AAAAABBB	4.59085	germline	1	0.000107571063557586	9.08382241372463e-05
1	16722153	16724730	4	gain	AAAB	58.8397	germline	1	0.0832829453133412	0.270068882570637
1	31431669	31434246	4	gain	AAAA	7.77203	germline	1	0.0832829453133412	0.270068882570637
1	49447476	49532517	1	loss	A	-1	germline	1	5.23251607049719e-20	0
1	55663200	55668354	0	loss	-	-1	germline	1	0.0143081843677507	0.0366349779853743
1	61646994	61654725	1	loss	A	-1	somatic	0	0.00271809003363044	0.00499122884576708
1	65107905	65365605	2	neutral	AA	21.832	somatic	0	0.941294099481013	0.170037283684861
1	72290004	72346698	1	loss	A	-1	germline	1	1.43339225429052e-15	0
1	79113900	79137093	2	neutral	AA	72.1056	somatic	0	0.422483799231101	0.856354990100476
1	86110455	86141379	2	neutral	AA	100	somatic	0	0.917618666969228	0.701987483190475
1	88143708	88164324	2	neutral	AA	54.5678	somatic	0	0.441875891669515	0.313904345420854
1	98851143	98907837	2	neutral	AA	100	somatic	0	0.053226311860529	0.163974143789189
1	99299541	99410352	2	neutral	AA	45.985	somatic	0	0.820233215347895	0.324202229932894
1	103561899	103616016	3	gain	AAB	16.799	germline	1	9.26774875427656e-09	5.63293522937158e-10
1	110836770	110844501	1	loss	A	-1	somatic	0	0.00271331557377107	0.00497546258170267
1	112163925	112264428	2	neutral	AA	100	somatic	0	0.345360560432192	0.678358575772126
1	119748036	119794422	2	neutral	AA	54.5687	somatic	0	0.0365650675550817	0.0590162572478443
1	125069541	125074695	3	gain	-	-1	germline	1	0.0158992891982915	0.0414583440360684
1	125079849	125082426	11	gain	-	-1	germline	1	0.0832708707818557	0.270047912337969
1	125082426	125085003	5	gain	-	-1	germline	1	0.083280403188857	0.270064467686034
1	125149428	125157159	4	gain	-	-1	germline	1	0.00270159568579263	0.00495974197934179
1	125162313	125164890	6	gain	-	-1	germline	1	0.083278496636744	0.270061156557155
1	151695105	152483667	2	neutral	AA	100	somatic	0	0.00613932853094896	0.0222072028016312
1	152581593	152612517	1	loss	A	-1	germline	1	2.06564428707587e-09	9.56760226600295e-11
1	162693741	162832899	2	neutral	AA	26.1337	somatic	0	0.226137801497357	0.231182526862451
1	166152075	166355658	2	neutral	AA	37.7206	somatic	0	0.096661879264858	0.0698868986008035
1	169257360	169272822	1	loss	A	-1	germline	1	2.22185419954239e-05	1.23979778381411e-05
1	177898041	177934119	2	neutral	AA	100	somatic	0	0.0841305054992472	0.141067930023223
1	191610258	191842188	2	neutral	AA	100	somatic	0	0.283789213206456	0.408274581719417
1	202882056	202936173	2	neutral	AA	36.5206	somatic	0	0.0196737261667476	0.106882246008228
1	222199248	222206979	1	loss	A	-1	somatic	0	0.0027997215174927	0.00528361565683155
1	228067077	228072231	1	loss	A	-1	somatic	0	0.0143115938913135	0.0366422256200822
1	229675125	229685433	1	loss	A	-1	somatic	0	0.000543385168231053	0.000697279730768052
1	234775008	234777585	4	gain	AAAB	96.0068	germline	1	0.0832829453133412	0.270068882570637
1	234777585	234782739	7	gain	AAAAABB	6.07369	germline	1	0.0143092873704866	0.0366361858373847
1	235035285	235277523	2	neutral	AA	45.4059	somatic	0	2.30354794460054e-10	2.14747053473019e-09
1	236097009	236099586	6	gain	AAAABB	20.8691	germline	1	0.0832772256216447	0.270058949154365
1	238156032	238212726	2	neutral	AA	54.568	somatic	0	0.125362791806098	0.173682669512147
1	244467105	244487721	2	neutral	AA	100	somatic	0	0.312236615877776	0.614092744246824
1	246371508	246384393	2	neutral	AA	100	somatic	0	0.358108464020637	0.659294589107929
2	3180018	3182595	7	gain	-	-1	germline	1	0.083274683638588	0.270054534388296
2	35750721	35766183	1	loss	A	-1	germline	1	2.21865366038142e-05	1.23420167743582e-05
2	59394696	59405004	1	loss	A	-1	somatic	0	0.000586894495786138	0.000783560254304039
2	61719150	61739766	1	loss	A	-1	germline	1	9.82892593234009e-07	2.41394200517497e-07
2	63842598	64035873	2	neutral	AA	100	somatic	0	0.885166692054609	0.434313302477983
2	76276623	76335894	2	neutral	AA	36.3786	germline	1	0.171114484141596	0.192247294452579
2	82095489	82139298	2	neutral	AA	54.5678	germline	1	0.957735208350834	0.981248998726043
2	89772372	89790411	5	gain	-	-1	germline	1	2.21121715271179e-05	1.22978480082692e-05
2	89790411	89792988	3	gain	-	-1	germline	1	0.0834171315167252	0.270301842421196
2	89792988	89795565	3	gain	AAA	100	germline	1	0.0835291932489984	0.270496271789489
2	89795565	89826489	4	gain	AAAB	6.70444	germline	1	9.2407981487652e-09	5.61127477816115e-10
2	89826489	89841951	22	gain	AAAAAAAAAAAAAAAAAAAAAA	5.25665	germline	1	2.20976714548578e-05	1.22914637240568e-05
2	89841951	89852259	4	gain	AABB	12.3975	germline	1	0.000532430956418923	0.00067127927463595
2	91411344	91413921	4	gain	-	-1	germline	1	0.0832829453133412	0.270068882570637
2	100371573	100397343	2	neutral	AA	100	somatic	0	0.687672298935169	0.859804315695206
2	116588634	116640174	2	neutral	AA	100	somatic	0	0.0418694907375914	0.034298524902641
2	117039609	117044763	1	loss	A	-1	somatic	0	0.0143541728913794	0.0367756243962006
2	117302463	117328233	2	neutral	AA	54.5678	somatic	0	0.230649803123646	0.181503951469185
2	125685444	125693175	1	loss	A	-1	somatic	0	0.0027077245327477	0.0049702377926939
2	132243909	132246486	4	gain	AABB	1.04335	somatic	0	0.0832829453133412	0.270068882570637
2	135802746	135869748	2	neutral	AA	54.5678	somatic	0	0.897468992379546	0.920549558421237
2	146105592	146118477	1	loss	A	-1	germline	1	0.000108398618516142	9.15370824585704e-05
2	147564174	147571905	2	neutral	AA	100	germline	1	0.32817500119863	0.653173146644958
2	169440327	169453212	2	neutral	AA	54.5678	germline	1	0.105463836174651	0.108996106758827
2	169463520	169468674	1	loss	A	-1	germline	1	0.0144784263610217	0.0371496307832709
2	169566600	169587216	2	neutral	AA	54.5678	somatic	0	0.0263635065674558	0.0554657805363798
2	183928221	183938529	1	loss	A	-1	somatic	0	0.000545830913314988	0.000702850556063339
2	196122585	196187010	2	neutral	AA	100	somatic	0	0.700612037453197	0.659086062344984
2	208033479	208079865	2	neutral	AA	54.5678	somatic	0	0.305315915313161	0.28469865283876
2	213870384	213883269	2	neutral	AA	100	somatic	0	0.898408917655123	0.817545271506877
2	214849644	214893453	2	neutral	AA	36.6027	somatic	0	0.0844859956321494	0.14307556979272
2	215076420	215089305	2	neutral	AA	54.5678	germline	1	0.691067132483934	0.982633908961409
2	216710238	216841665	2	neutral	AA	54.39	somatic	0	0.00306717155458851	0.00513598641483393
2	219186735	219191889	0	loss	-	-1	germline	1	0.0143086857233327	0.0366382996622402
2	235187328	235274946	2	neutral	AA	22.7934	somatic	0	0.625119064906979	0.32756091886969
3	976683	992145	2	neutral	AA	27.2839	germline	1	0.617229425421187	0.79650766041416
3	1419927	1440543	2	neutral	AA	100	somatic	0	0.0940975830024638	0.219201966719812
3	11596500	11617116	2	neutral	AA	65.1442	germline	1	0.788319897683062	0.669941278184381
3	23832096	23868174	2	neutral	AA	92.7255	somatic	0	0.305911931004079	0.66586585879071
3	31179123	31184277	2	neutral	AA	13.642	somatic	0	0.878312597684747	0.98838100558037
3	39775995	39781149	2	neutral	AA	54.5678	somatic	0	0.942453649311593	0.862077324685727
3	43739421	43744575	2	neutral	AA	100	somatic	0	0.793110739439509	0.901878531294254
3	45151617	45159348	2	neutral	AA	100	germline	1	0.638332948563203	0.491858893648921
3	53472750	53480481	2	neutral	AA	100	somatic	0	0.425187494186793	0.689983404776759
3	53841261	53913417	2	neutral	AA	54.5873	germline	1	0.795979797056774	0.987962808537012
3	61644417	61654725	1	loss	A	-1	germline	1	0.000534192648209017	0.000675262945238897
3	64499733	64533234	2	neutral	AA	36.744	somatic	0	0.00940928709220074	0.00717765825051919
3	68689935	68700243	1	loss	A	-1	germline	1	0.0144560496713819	0.037080606428714
3	77776437	77938788	2	neutral	AA	1.06722	somatic	0	0.0843160977652941	0.356441105940767
3	86004798	86115609	2	neutral	AA	81.18	somatic	0	0.654105860453483	0.769651876493876
3	86540814	86615547	2	neutral	AA	21.8271	somatic	0	0.75718205448062	0.968698165728656
3	87324222	87329376	2	neutral	AA	100	somatic	0	0.962861998302246	0.991131412770976
3	90398583	93818262	2	neutral	AA	6.04149	somatic	0	0.0508574320169108	0.0491600538902116
3	99178422	99183576	1	loss	A	-1	germline	1	0.0143390968104988	0.036730808356667
3	125507631	125517939	1	loss	A	-1	germline	1	0.000536638965746696	0.00067638768756384
3	129141201	129236550	2	neutral	AA	16.363	somatic	0	5.88627058652725e-08	3.25717652871482e-06
3	129795759	129800913	2	neutral	AA	54.5678	somatic	0	0.140908168660746	0.173775219238217
3	130607514	130643592	2	neutral	AA	54.5678	somatic	0	0.214438146002364	0.345262987647515
3	144399618	144438273	2	neutral	AA	100	somatic	0	0.166241765047503	0.545319738332262
3	146170017	146190633	2	neutral	AA	100	somatic	0	0.0425607649805809	0.200506997926224
3	146190633	146193210	1	loss	A	-1	somatic	0	0.0847325498700544	0.272577275733945
3	157178961	157287195	2	neutral	AA	68.4882	somatic	0	0.507895143819113	0.31852714646075
3	158140182	158253570	2	neutral	AA	100	germline	1	0.730375037836098	0.927619622404756
3	158995746	159049863	2	neutral	AA	100	somatic	0	0.713727550043874	0.705449144048214
3	159609072	159632265	2	neutral	AA	54.5681	somatic	0	0.237554840723774	0.344996608848467
3	162794244	162907632	1	loss	A	-1	germline	1	7.23285771431411e-30	0
3	163046790	163051944	0	loss	-	-1	germline	1	0.0143069811775778	0.036634072119232
3	166585011	166693245	2	neutral	AA	100	somatic	0	0.560574154676013	0.760443096411266
3	169221282	169234167	2	neutral	AA	100	somatic	0	0.777960059778795	0.641156845098771
3	169357863	169414557	2	neutral	AA	27.2853	somatic	0	0.00399088271061703	0.00559573824811765
3	171218457	171221034	1	loss	A	-1	somatic	0	0.0850986072931862	0.273207850902861
3	186512952	186523260	2	neutral	AA	100	somatic	0	0.960637685257829	0.986467829389991
3	190082097	190092405	1	loss	A	-1	germline	1	0.000548312320908407	0.00069730266532253
3	192695175	192700329	2	neutral	AA	100	somatic	0	0.22007197933755	0.55501021686573
3	193156458	193169343	1	loss	A	-1	germline	1	0.000114156757398923	0.000104739134452747
3	195900963	196024659	2	neutral	AA	37.3834	somatic	0	0.577249870832482	0.541050698776335
4	126273	134004	1	loss	A	-1	germline	1	0.0143092873704866	0.0366361858373838
4	554055	556632	4	gain	-	-1	somatic	0	0.0832835808542838	0.270069986300019
4	7862427	7865004	4	gain	-	-1	somatic	0	0.0832829453133412	0.270068882570637
4	40293972	40296549	4	gain	-	-1	germline	1	0.0832835808542838	0.270069986300019
4	42760161	42767892	1	loss	A	-1	somatic	0	0.00271527951900176	0.00498826918767559
4	46200456	46203033	0	loss	-	-1	germline	1	0.0832657871928656	0.270039083121914
4	63200925	63203502	0	loss	-	-1	germline	1	0.0832657871928656	0.270039083121914
4	63827136	63850329	1	loss	A	-1	germline	1	9.87995002992143e-07	2.42564328400974e-07
4	68517276	68622933	1	loss	A	-1	germline	1	1.13495096300974e-20	0
4	69295530	69365109	1	loss	A	-1	germline	1	9.77752800864319e-07	2.30186746108529e-07
4	70620108	70625262	1	loss	A	-1	germline	1	0.0145879634318299	0.0374804192662582
4	134511669	134514246	0	loss	-	-1	germline	1	0.0832651517619189	0.270037979484724
4	137168556	137178864	1	loss	A	-1	germline	1	0.000535927785981613	0.000678586547097404
4	160956843	160964574	1	loss	A	-1	germline	1	0.014313098320712	0.0366488703872446
4	163948740	163961625	3	gain	-	-1	germline	1	0.000107804930221321	9.10462220830022e-05
4	165080043	165085197	1	loss	A	-1	germline	1	0.0143182144241989	0.0366546098981912
4	186170211	186177942	1	loss	A	-1	germline	1	0.0147220683051462	0.0378830628442549
5	757638	778254	4	gain	-	-1	germline	1	0.00270137638035863	0.00495937407440783
5	12810267	12820575	0	loss	-	-1	germline	1	0.0143064798746813	0.0366325623858791
5	46270035	46275189	1	loss	A	-1	somatic	0	0.014358597859714	0.0367120482748244
5	50936982	50944713	1	loss	A	-1	germline	1	0.0143394986579914	0.0367096282298091
5	52908387	52913541	1	loss	A	-1	somatic	0	0.0155925264045404	0.0405102322204061
5	84651873	84659604	0	loss	-	-1	germline	1	0.0143068809157589	0.0366325623858791
5	86417118	86422272	1	loss	A	-1	somatic	0	0.0177948426063291	0.0473029951046766
5	86917056	86922210	1	loss	A	-1	germline	1	0.0143371881705573	0.0367250584082622
5	91202607	91207761	1	loss	A	-1	germline	1	0.0143504528263267	0.036733229623188
5	118536846	118542000	1	loss	A	-1	germline	1	0.014948460988115	0.0385693811140176
5	119619186	119626917	1	loss	A	-1	somatic	0	0.00289132546196883	0.00550342246339919
5	135776976	135784707	1	loss	A	-1	somatic	0	0.00311539562568739	0.00640490803499916
5	137516451	137521605	1	loss	A	-1	somatic	0	0.0143751015251834	0.0368304982198495
5	141196407	141335565	2	neutral	AA	40.6129	somatic	0	0.273100049344498	0.706018901501879
5	141389682	141479877	2	neutral	AA	54.5678	somatic	0	0.0733966418946061	0.178775126633091
5	141536571	141541725	2	neutral	AA	54.5678	somatic	0	0.0694808873553286	0.176772385533536
5	145474227	145530921	2	neutral	AA	54.5873	somatic	0	0.0460499159848061	0.117123298047337
5	147597675	147613137	2	neutral	AA	65.1443	somatic	0	0.876303828923617	0.824889031706687
5	149654121	149746893	2	neutral	AA	20.7766	somatic	0	0.384294193461922	0.260717550317941
5	151208052	151316286	2	neutral	AA	54.5728	germline	1	0.268737458489667	0.519334632065515
5	151318863	154120062	2	neutral	AA	100	somatic	0	4.0523067879541e-13	2.85086843021531e-10
5	154524651	154965318	2	neutral	AA	11.2873	somatic	0	6.63450907032106e-08	4.87741586584489e-05
5	154965318	156104352	2	neutral	AA	100	somatic	0	0.00109406331498641	9.52259608467676e-05
5	156622329	157828365	2	neutral	AA	100	somatic	0	0.462709852721616	0.529467737121972
5	157828365	157941753	2	neutral	AA	54.5683	somatic	0	8.51637219026142e-06	0.000171991265076499
5	158209761	158451999	2	neutral	AA	54.5678	germline	1	0.000355034704420794	0.00395881191771708
5	158598888	159882234	2	neutral	AA	18.7959	somatic	0	2.923985871371e-07	0.000169984576647186
5	160212090	160235283	2	neutral	AA	54.7479	germline	1	0.00345610163096614	0.0114438929444681
5	161807253	162265959	2	neutral	AA	54.5678	germline	1	0.57944187578223	0.758657045396343
5	162330384	162598392	2	neutral	AA	100	germline	1	0.123849015077819	0.143060308501452
5	162600969	162941133	2	neutral	AA	53.7118	germline	1	0.522550222201283	0.827397687836895
5	163021020	163247796	2	neutral	AA	100	germline	1	0.657019333659024	0.562721685607321
5	163281297	165394437	2	neutral	AA	7.6713	germline	1	0.3384976673863	0.108842442659197
5	166244847	166262886	2	neutral	AA	100	germline	1	0.80606315919022	0.767348816377197
5	166865904	166871058	2	neutral	AA	100	somatic	0	0.777313373121056	0.752774421222527
5	167041140	167102988	2	neutral	AA	54.8373	somatic	0	0.726112547062333	0.451810317952813
5	167716314	167834856	2	neutral	AA	100	somatic	0	0.715411265947024	0.557117298207123
5	169728951	169811415	2	neutral	AA	54.5678	somatic	0	0.0858056914813788	0.169373732513369
5	171834360	171836937	2	neutral	AA	100	somatic	0	0.245653709932458	0.488219967377494
5	176622426	176630157	2	neutral	AA	54.568	germline	1	0.386673342513667	0.338203567444857
5	178583523	178586100	5	gain	AAABB	12.2159	germline	1	0.0832816742432419	0.27006667512175
5	178681449	178686603	1	loss	A	-1	somatic	0	0.0143601066466253	0.0367465490851653
5	180889938	181041981	2	neutral	AA	100	somatic	0	0.844473979931808	0.881652519902129
5	181041981	181047135	3	gain	AAB	100	somatic	0	0.0150568240500581	0.0388895442743932
6	296355	381396	4	gain	AAAB	28.029	germline	1	5.26632966225849e-22	0
6	8872611	8944767	2	neutral	AA	36.514	somatic	0	0.945413038944815	0.938337441790497
6	14743017	14763633	2	neutral	AA	54.5679	somatic	0	0.560073061736114	0.824766077781155
6	16389720	16402605	3	gain	AAB	12.7334	germline	1	0.000108140515457835	9.14390864226178e-05
6	21992118	22017888	2	neutral	AA	54.5685	somatic	0	0.0907219472014943	0.248155989254339
6	32488239	32493393	1	loss	A	-1	germline	1	0.0143306603074349	0.0366869470945143
6	32498547	32666052	1	loss	A	-1	germline	1	2.59839593203455e-15	0
6	33660774	33838587	2	neutral	AA	29.5476	somatic	0	2.43750440074055e-05	0.000353070463108729
6	35786799	35799684	3	gain	AAB	3.46636	germline	1	0.000109426826856342	9.52847964829084e-05
6	38209179	38219487	2	neutral	AA	100	somatic	0	0.92138457260353	0.879835386245061
6	40301703	40332627	2	neutral	AA	100	somatic	0	0.0195809199410114	0.04985119087908
6	49517055	49527363	2	neutral	AA	100	somatic	0	0.971094309147333	0.704271311492056
6	54062883	54070614	1	loss	A	-1	somatic	0	0.00277356944391108	0.0051432450643818
6	55959555	55982748	1	loss	A	-1	germline	1	2.13314735326913e-07	3.71454523806491e-08
6	60229644	60239952	3	gain	-	-1	germline	1	0.000535128758482049	0.000677145928795309
6	68519853	68532738	3	gain	AAB	7.00757	germline	1	0.000108166724709615	9.14805341148961e-05
6	78255759	78327915	1	loss	A	-1	germline	1	5.19054664159009e-20	0
6	94764021	94851639	1	loss	A	-1	germline	1	1.12776506328541e-20	0
6	107950530	107960838	2	neutral	AA	100	somatic	0	0.0359357803603	0.0823925247686407
6	119260983	119317677	2	neutral	AA	100	germline	1	0.172795471360111	0.422732987459055
6	122397192	122600775	2	neutral	AA	67.9651	somatic	0	0.579232199912123	0.942321212509771
6	133102050	133333980	2	neutral	AA	70.4857	somatic	0	0.000299135287168149	0.00280163298917646
6	151184859	151192590	1	loss	A	-1	somatic	0	0.00273275499017077	0.0050134157088596
6	157312965	157315542	7	gain	AAAAABB	6.32515	germline	1	0.0832759546222594	0.270056741764745
7	3803652	4084545	2	neutral	AA	11.7174	somatic	0	0.145481812506409	0.186255750219021
7	9761676	9766830	1	loss	A	-1	somatic	0	0.0143607102005437	0.0367947160047087
7	54395316	54397893	1	loss	A	-1	germline	1	0.0832727771925441	0.270051223348312
7	57443907	57446484	0	loss	-	-1	somatic	0	0.0832708707818557	0.270047912337966
7	57485139	57498024	3	gain	AAB	2.37309	somatic	0	0.000107870979300398	9.10724881667546e-05
7	57820149	57992808	2	neutral	AA	0.974569	germline	1	0.126700978508244	0.157454370272327
7	57992808	58008270	1	loss	A	-1	germline	1	0.000114208573207362	0.000105688185414565
7	58008270	58026309	2	neutral	AA	100	somatic	0	0.212523208406647	0.0673372844428047
7	58062387	61046553	2	neutral	AA	-1	somatic	0	2.53873715311721e-15	1.18127729820117e-13
7	61046553	61056861	3	gain	-	-1	germline	1	0.00053263232113366	0.000671677755201161
7	61056861	61963965	2	neutral	AA	2.66953	germline	1	0.00327125604771539	0.00950335898634125
7	62296398	62347938	3	gain	AAB	0.476869	germline	1	2.95191716221195e-09	1.03439956600226e-09
7	62347938	62358246	2	neutral	AA	3.01159	somatic	0	0.00119914882375502	0.00285408312753888
7	62402055	62407209	5	gain	-	-1	germline	1	0.0143111927336994	0.0366398096024703
7	62438133	62456172	3	gain	AAB	16.3264	germline	1	4.89032984974513e-06	2.16525920959665e-06
7	62518020	62533482	2	neutral	AA	7.69302	germline	1	0.0516444658537549	0.0419621061822721
7	62541213	62546367	1	loss	A	-1	somatic	0	0.0144309249835836	0.0370049919827322
7	65795964	65821734	3	gain	AAB	0.201562	germline	1	4.3503833926837e-08	4.15248535556856e-09
7	68398734	68452851	2	neutral	AA	22.7157	somatic	0	0.153349402386024	0.460387970511224
7	70955118	70962849	1	loss	A	-1	somatic	0	0.00273087178291037	0.00503525768814717
7	71790066	72408546	2	neutral	AA	21.9014	somatic	0	1.51800702062092e-13	1.59026902757375e-10
7	76106541	76160658	2	neutral	AA	15.6319	somatic	0	0.0541791413680641	0.102204645985164
7	86015106	86311461	2	neutral	AA	70.5676	somatic	0	0.237011709099091	0.367649602778077
7	89141007	91024794	2	neutral	AA	35.7675	somatic	0	0.000239878170100538	0.000961160891651103
7	93697143	93702297	1	loss	A	-1	somatic	0	0.014356888070249	0.0367386779834029
7	100729776	100745238	1	loss	A	-1	germline	1	0.000108706760519951	9.27284786832461e-05
7	100948821	100956552	3	gain	AAB	1.3375	germline	1	0.00270267417415561	0.00496194993437371
7	100956552	100959129	14	gain	AAAAAAAAAAAAAB	6.63659	germline	1	0.0832695998610384	0.270045705014201
7	100959129	100969437	4	gain	AABB	0.292861	germline	1	0.000532660588526127	0.000671976761141613
7	100969437	100972014	3	gain	AAB	4.48488	germline	1	0.0833102771216553	0.27011634590732
7	100972014	100977168	3	gain	AAB	2.14086	germline	1	0.0210601734666124	0.0575270460990391
7	100977168	101283831	2	neutral	AA	4.30492	somatic	0	6.07244091217278e-10	5.43903511118771e-09
7	102080124	102085278	1	loss	A	-1	germline	1	0.0143115938913135	0.0366467560287994
7	115434138	115465062	2	neutral	AA	54.5678	somatic	0	0.937192486959344	0.968527754796271
7	116977761	117031878	2	neutral	AA	35.6723	somatic	0	0.698757941634272	0.355451406913563
7	143126580	143196159	1	loss	A	-1	germline	1	4.88472481626878e-18	0
7	143848140	143850717	4	gain	-	-1	germline	1	0.0832829453133412	0.270068882570637
7	152401203	152408934	9	gain	AAAAAABBB	6.63685	germline	1	0.00270049932128467	0.00495857703286873
7	154599384	154609692	1	loss	A	-1	germline	1	0.000538137090064629	0.000682858188201463
7	155802843	155862114	2	neutral	AA	27.2859	germline	1	0.122180831920992	0.109386354637392
7	156369783	156403284	2	neutral	AA	100	somatic	0	0.502214165967045	0.834346506520669
7	158596311	158622081	1	loss	A	-1	germline	1	2.05251180148029e-07	3.08550386352024e-08
7	158877204	158910705	2	neutral	AA	62.9456	somatic	0	0.246334347121757	0.266205117160005
7	158910705	158931321	2	neutral	AA	28.791	somatic	0	0.38294662939148	0.505500915829624
8	644250	646827	0	loss	-	-1	germline	1	0.0832651517619189	0.270037979484724
8	6112644	6115221	0	loss	-	-1	germline	1	0.0832651517619189	0.270037979484724
8	25208214	25213368	0	loss	-	-1	germline	1	0.0143088862699045	0.0366398096024694
8	27782637	27867678	2	neutral	AA	100	somatic	0	0.185708279158699	0.410749113736639
8	42332379	42337533	0	loss	-	-1	germline	1	0.0143072819667534	0.036634072119232
8	43236906	43242060	11	gain	AAAAAAABBBB	2.41479	germline	1	0.0143077832944425	0.0366343740724361
8	53215050	53220204	2	neutral	AA	100	germline	1	0.224566391589123	0.348981859179079
8	64976478	65025441	2	neutral	AA	100	somatic	0	0.615254752231952	0.940907840927067
8	70702572	70720611	1	loss	A	-1	germline	1	4.63431394395482e-06	1.67918087445873e-06
8	71560713	71619984	2	neutral	AA	100	somatic	0	0.124563566146882	0.166580227322295
8	84448290	84530754	2	neutral	AA	54.5679	somatic	0	0.0572340240373909	0.108370303778606
8	104546313	104548890	1	loss	A	-1	somatic	0	0.0832823097763272	0.270067778844544
8	111280014	111285168	1	loss	A	-1	germline	1	0.0143773167037825	0.0368447589326625
8	119023899	119036784	2	neutral	AA	100	germline	1	0.152136773444844	0.452657927457183
8	144123879	144126456	6	gain	AAAABB	8.08823	germline	1	0.0832778611272301	0.270060052854113
9	6700200	6710508	1	loss	A	-1	somatic	0	0.000533420798509041	0.000672608405741681
9	15815049	15817626	0	loss	-	-1	germline	1	0.0832657871928656	0.270039083121914
9	23363082	23375967	1	loss	A	-1	germline	1	0.000108433407512766	9.16578299263726e-05
9	29091753	29099484	1	loss	A	-1	germline	1	0.014390916438615	0.0368824061255553
9	40912452	40915029	6	gain	-	-1	germline	1	0.0832772256216447	0.270058949154365
9	40922760	40925337	5	gain	-	-1	germline	1	0.0832791321501865	0.270062260263489
9	40925337	40927914	6	gain	-	-1	germline	1	0.0832772256216447	0.270058949154365
9	42386496	42389073	6	gain	AAAABB	16.6852	somatic	0	0.0832778611272301	0.270060052854113
9	60518268	68622933	2	neutral	AA	5.73143	somatic	0	0.056960240254753	0.189723825481264
9	68793015	68808477	2	neutral	AA	100	somatic	0	0.501731334488119	0.45739328654844
9	69122871	69128025	1	loss	A	-1	somatic	0	0.0143295558515569	0.0366669978382352
9	71787489	71808105	2	neutral	AA	100	somatic	0	0.348159125665952	0.66778794320708
9	73403268	73413576	1	loss	A	-1	germline	1	0.000544700558823853	0.00070095826569061
9	73568196	73575927	2	neutral	AA	100	somatic	0	0.610634578377189	0.599486375100109
9	75395289	75397866	2	neutral	AA	100	somatic	0	0.320752980764093	0.566063335759756
9	78047022	78049599	2	neutral	AA	100	somatic	0	0.141528535972065	0.359960400722425
9	81353313	81355890	0	loss	-	-1	germline	1	0.0832651517619189	0.270037979484724
9	82585119	82683045	2	neutral	AA	100	somatic	0	0.0368123352917475	0.0485759249786994
9	87033021	87172179	2	neutral	AA	73.5411	germline	1	0.666535640839236	0.678498377966313
9	103012998	103015575	0	loss	-	-1	germline	1	0.0832670580665435	0.270041290406172
9	109991514	110037900	2	neutral	AA	27.3044	somatic	0	0.284959988501931	0.472714593337992
9	110262099	110267253	1	loss	A	-1	somatic	0	0.0143344762782395	0.0366742510148601
9	110878002	110880579	2	neutral	AA	100	somatic	0	0.27051231518011	0.515023618568096
9	112465434	112470588	2	neutral	AA	100	somatic	0	0.0724590594778427	0.113768327217802
9	118925973	118931127	2	neutral	AA	100	germline	1	0.228034020557212	0.457353302375386
9	119894925	119967081	2	neutral	AA	28.6194	germline	1	0.0996624072478203	0.0812977320864102
9	122435847	122459040	2	neutral	AA	100	somatic	0	0.882851719157774	0.949326327323461
9	124002663	124033587	2	neutral	AA	36.3791	somatic	0	0.255723608297341	0.314386650945962
9	128669610	128672187	1	loss	A	-1	somatic	0	0.084232985496274	0.271714875715727
9	128672187	128674764	2	neutral	AA	100	somatic	0	0.331284092039951	0.576247618273116
9	129386016	129445287	2	neutral	AA	0.209379	somatic	0	0.00176471886374617	0.00275528303908457
9	130401354	130411662	2	neutral	AA	54.5704	somatic	0	0.537232564310541	0.766830316576857
9	137325753	137328330	6	gain	AAAABB	6.10278	germline	1	0.0832778611272301	0.270060052854113
9	137330907	137333484	2	neutral	AA	100	somatic	0	0.477712695119749	0.703023616297795
10	131427	342741	2	neutral	AA	36.6177	somatic	0	0.219506385030334	0.285813754984304
10	1636395	1662165	2	neutral	AA	36.3786	somatic	0	0.0749895250001508	0.0968542316478205
10	4246896	4249473	1	loss	A	-1	somatic	0	0.0832829453133412	0.270068882570634
10	5847213	5852367	1	loss	A	-1	germline	1	0.0143301582727276	0.0367035787278691
10	6396114	6447654	2	neutral	AA	100	somatic	0	0.255631264165675	0.417598235027925
10	9751368	9764253	2	neutral	AA	100	germline	1	0.762441552268123	0.877144643436894
10	21030897	21097899	2	neutral	AA	100	somatic	0	0.669616487377698	0.861140403105112
10	26568870	26659065	2	neutral	AA	0.407148	somatic	0	0.0270553892891512	0.122789883036689
10	26865225	27241467	2	neutral	AA	3.92817	somatic	0	2.1053163888561e-05	0.000185172414475021
10	30156054	30241095	2	neutral	AA	54.6179	germline	1	0.34867706559698	0.378888294965627
10	33459768	33495846	2	neutral	AA	100	somatic	0	0.723118654528511	0.96128573351156
10	33575733	33580887	2	neutral	AA	100	germline	1	0.984926475044199	0.957117107807132
10	38484918	38791581	3	gain	AAB	0.768055	somatic	0	1.96903839128294e-18	0
10	39252864	39265749	1	loss	A	-1	germline	1	0.000369187894834253	0.0030803651206095
10	39340482	39353367	1	loss	A	-1	germline	1	0.000108064047043639	9.14334358469437e-05
10	41837595	41842749	2	neutral	AA	8.09583	germline	1	0.0164513467723408	0.0428227075264552
10	41858211	41878827	17	gain	AAAAAAAAAAABBBBBB	3.40959	germline	1	0.000532116686692961	0.000671024805871334
10	41881404	41883981	65	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1.45357	germline	1	0.0832670580665435	0.270041290406175
10	42298878	42316917	3	gain	AAB	1.86678	somatic	0	1.7049247422441e-05	7.69297330920349e-05
10	42316917	42322071	3	gain	AAB	13.5975	somatic	0	0.014321425351903	0.0366555162086486
10	46514850	46558659	5	gain	AAABB	0.639686	germline	1	1.97544513472494e-11	1.87516668859189e-13
10	47326605	47334336	2	neutral	AA	100	germline	1	0.977660382697628	0.998522360170263
10	55825551	55887399	2	neutral	AA	100	somatic	0	0.579482000237561	0.843601935666232
10	56750694	56766156	1	loss	A	-1	germline	1	0.000361671484191497	0.000484143156522787
10	58000539	58010847	2	neutral	AA	100	germline	1	0.586270927809294	0.825462792919631
10	65540841	65553726	1	loss	A	28.8977	germline	1	0.0155228164444956	0.0280097546249126
10	67942605	67947759	2	neutral	AA	100	somatic	0	0.527522013169742	0.813898239411447
10	69517152	69530037	1	loss	A	-1	germline	1	0.00514693683157533	0.00350297327354909
10	79325214	81366198	2	neutral	AA	100	somatic	0	0.0173397863021379	0.0549103549369757
10	106270326	106272903	0	loss	-	-1	germline	1	0.0832657871928656	0.270039083121914
10	114524457	114545073	2	neutral	AA	100	somatic	0	0.206943753765507	0.205093060436314
10	115779456	115849035	2	neutral	AA	54.5678	somatic	0	0.0962243746150425	0.0545130468401802
10	117016416	117067956	2	neutral	AA	36.3989	somatic	0	0.460294611508273	0.502733431759106
10	128463450	128466027	3	gain	AAA	14.3216	somatic	0	0.0832880297508856	0.270077712497887
10	131622852	131625429	0	loss	-	-1	germline	1	0.0832708707818557	0.270047912337966
10	131733663	132004248	2	neutral	AA	10.1808	somatic	0	0.685863376085883	0.919271217294591
10	133109781	133112358	5	gain	AAABB	89.4703	germline	1	0.0832823097763272	0.270067778844547
10	133315941	133318518	1	loss	A	-1	somatic	0	0.0832772256216447	0.270058949154361
11	10202343	10212651	1	loss	A	-1	germline	1	0.000558258503801007	0.000738951064814586
11	28986096	28991250	1	loss	A	-1	germline	1	0.0143765111494591	0.0367986566219436
11	54756096	54779289	1	loss	A	-1	germline	1	9.82397618132972e-07	2.35431233508443e-07
11	55119453	55124607	1	loss	A	-1	germline	1	0.0143299574631886	0.0366851331334533
11	57933537	57959307	2	neutral	AA	54.5678	somatic	0	0.911182173206114	0.984371815779551
11	61002744	61033668	2	neutral	AA	54.5678	germline	1	0.327612316830158	0.344469027289278
11	61466604	61469181	2	neutral	AA	100	somatic	0	0.143627504926856	0.362876633763496
11	66942729	66947883	1	loss	A	-1	somatic	0	0.0144707277664133	0.0371227406970469
11	69042984	69089370	2	neutral	AA	42.9323	somatic	0	0.0319951522322036	0.0587876236882283
11	69277491	69303261	2	neutral	AA	6.66674	somatic	0	0.00127230241652459	0.00775783996439217
11	70444872	70465488	1	loss	A	-1	germline	1	4.64955464811118e-06	1.70047219427705e-06
11	83365950	83670036	2	neutral	AA	17.0277	somatic	0	0.00844926911041692	0.00282402126548975
11	86164572	86265075	2	neutral	AA	41.6974	germline	1	0.464417835342258	0.595238536465338
11	93624987	93694566	2	neutral	AA	100	somatic	0	0.0224098372207745	0.0163493757874815
11	93856917	93859494	2	neutral	AA	100	somatic	0	0.115245175776701	0.321800307343818
11	93949689	93954843	1	loss	A	-1	somatic	0	0.0143666463392809	0.0367386779834029
11	103409856	103453665	2	neutral	AA	36.538	somatic	0	0.164823632343555	0.178098950960958
11	104396847	104402001	1	loss	A	-1	germline	1	0.0143473366698109	0.0367320189724738
11	107507286	107548518	2	neutral	AA	45.3095	somatic	0	0.822700309659699	0.432388929138916
11	109455498	109460652	2	neutral	AA	100	somatic	0	0.295786401021809	0.282683314748795
11	110022438	110156442	2	neutral	AA	100	somatic	0	0.297821798885177	0.169418994247051
11	111514521	111839223	2	neutral	AA	79.0623	somatic	0	0.618349901998818	0.52846334316568
11	111937149	111962919	2	neutral	AA	100	somatic	0	0.0822595686484884	0.211913611285802
11	121593168	121600899	2	neutral	AA	100	somatic	0	0.424325203144508	0.324543769984424
11	122142069	122147223	2	neutral	AA	100	somatic	0	0.101464889703433	0.158235354380499
11	123226986	123247602	2	neutral	AA	36.385	somatic	0	0.781120377030991	0.33023171945861
11	130803366	130816251	2	neutral	AA	54.8373	somatic	0	0.202036124910564	0.208111253149642
11	131264649	131267226	1	loss	A	-1	germline	1	0.0832759546222594	0.270056741764741
12	860718	889065	2	neutral	AA	54.5681	somatic	0	0.337344798037993	0.798526038337705
12	2254875	2257452	6	gain	AAAABB	100	germline	1	0.083278496636744	0.270061156557155
12	6094605	6308496	2	neutral	AA	42.9599	somatic	0	7.64057999697479e-05	2.57341143780065e-05
12	10354386	10480659	2	neutral	AA	54.6331	somatic	0	0.214474209818136	0.270642623899161
12	15611466	15621774	2	neutral	AA	100	somatic	0	0.604813594455489	0.804664888924361
12	21188094	21244788	3	gain	AAB	8.11076	germline	1	4.39931137336069e-14	1.11022302462516e-16
12	30083898	30091629	1	loss	A	-1	somatic	0	0.00275408807803308	0.00508171092829612
12	34676112	34686420	2	neutral	AA	8.741	somatic	0	0.377313972233944	0.446998839809017
12	37719549	37724703	3	gain	AAA	100	somatic	0	0.014322328539755	0.0366558183164909
12	37724703	37745319	2	neutral	AA	30.2936	somatic	0	0.948578862479042	0.809892448578306
12	39708993	39714147	1	loss	A	-1	germline	1	0.0145934211518096	0.0374930509449094
12	42025716	42383919	2	neutral	AA	1.28702	somatic	0	8.78916594222238e-06	0.000182905324624838
12	45509820	45517551	1	loss	A	-1	germline	1	0.00286639855822985	0.00549607502187466
12	56593497	56861505	2	neutral	AA	30.0972	somatic	0	1.54823664363161e-13	6.72758515563032e-11
12	59541585	59551893	1	loss	A	-1	germline	1	0.00053699844559058	0.000676443413473837
12	60126564	60131718	1	loss	A	-1	germline	1	0.0143238339644965	0.0366836215591784
12	60234798	60265722	2	neutral	AA	100	germline	1	0.190916546109446	0.38489060911774
12	64494579	64510041	2	neutral	AA	54.5685	somatic	0	0.336756877959823	0.593441114537516
12	73743432	73815588	2	neutral	AA	100	somatic	0	0.199604268734356	0.213191703236356
12	74810310	74887620	2	neutral	AA	100	somatic	0	0.261466999996904	0.369005453021279
12	78992781	79067514	2	neutral	AA	88.1435	somatic	0	0.939278707840321	0.993643969947126
12	83667459	83760231	2	neutral	AA	27.329	germline	1	0.05213720228011	0.121464837182572
12	84054009	84061740	1	loss	A	-1	germline	1	0.00270605842620834	0.00496907058662277
12	90091920	90097074	1	loss	A	-1	somatic	0	0.0143133992233314	0.0366509848524208
12	94034730	94042461	2	neutral	AA	100	somatic	0	0.0179217888661323	0.044080066663433
12	99400044	99407775	1	loss	A	-1	germline	1	0.00271775924694933	0.00499579480551138
12	124000086	124113474	2	neutral	AA	27.2843	germline	1	0.800791594521947	0.965343344075452
12	128834538	128850000	2	neutral	AA	27.2839	somatic	0	0.104908739687173	0.221727035451339
12	130257042	130267350	2	neutral	AA	100	somatic	0	0.891949703922983	0.918855336369351
12	130643592	130648746	3	gain	AAB	100	germline	1	0.0143159069621735	0.0366521931661585
12	132983508	133004124	2	neutral	AA	100	somatic	0	0.0348189703471898	0.121770069959608
13	18232275	18234852	1	loss	A	-1	germline	1	0.0834024960862157	0.270276441574199
13	27937257	27955296	3	gain	AAB	4.65797	germline	1	4.8725144235641e-06	2.12266555510432e-06
13	33560271	33570579	1	loss	A	-1	germline	1	0.000541717272602761	0.000690715285493693
13	35956881	35959458	3	gain	AAB	12.5472	somatic	0	0.0832937500436748	0.27008764641793
13	36701634	36729981	2	neutral	AA	13.642	somatic	0	0.296771059466085	0.585680766202957
13	36830484	36840792	2	neutral	AA	100	somatic	0	0.379327890271723	0.579549505453131
13	37497927	37510812	1	loss	A	-1	germline	1	0.000108556318240904	9.16238544164116e-05
13	38482341	38487495	1	loss	A	-1	germline	1	0.014315405383402	0.0366546098981912
13	45414471	45432510	1	loss	A	11.3634	somatic	0	9.53285531297976e-06	1.99481098073218e-05
13	48957846	48963000	1	loss	A	-1	germline	1	0.0143923274305984	0.036820184969553
13	50493738	50501469	1	loss	A	-1	germline	1	0.014325339528816	0.036687249428987
13	63028266	63043728	3	gain	AAB	0.855737	germline	1	0.000108705692861173	9.32893627484388e-05
13	63059190	63069498	3	gain	AAB	0.598188	germline	1	0.000532766603698294	0.000672065379455855
13	64767741	64770318	0	loss	-	-1	germline	1	0.0832676935092748	0.270042394053239
13	69684657	69700119	2	neutral	AA	93.0928	somatic	0	0.00189821199307324	0.00348335272942779
13	82590273	82598004	1	loss	A	-1	germline	1	0.00274797478732812	0.00506080855817803
13	90210462	90213039	0	loss	-	-1	germline	1	0.0832695998610384	0.270045705014197
13	94547553	94604247	2	neutral	AA	27.3776	somatic	0	0.0505809534785706	0.0766397358582853
13	97877037	97882191	1	loss	A	-1	somatic	0	0.0147221711281888	0.0378320995126969
13	98601174	98606328	1	loss	A	-1	germline	1	0.0143431157324575	0.0367407969810732
13	109019985	109025139	1	loss	A	-1	somatic	0	0.0154566091367663	0.0400937543038894
13	109215837	109220991	1	loss	A	-1	somatic	0	0.0163434957017217	0.0427888110177043
14	0	16093365	3	gain	AAB	-1	somatic	0	NA	NA
14	16093365	16095942	8	gain	-	-1	germline	1	0.0832734126706303	0.270052327025017
14	16095942	18487398	3	gain	AAB	-1	somatic	0	NA	NA
14	18489975	18660057	3	gain	AAB	-1	germline	1	NA	NA
14	18660057	19956288	3	gain	AAB	0.347513	germline	1	9.30586060767257e-34	0
14	20329953	20332530	2	neutral	AA	100	germline	1	0.147703131101145	0.368490684790002
14	20664963	20667540	2	neutral	AA	100	somatic	0	0.625146299330317	0.80575963172379
14	22378668	22417323	2	neutral	AA	100	somatic	0	0.220362551599804	0.304526107571079
14	25677228	25679805	2	neutral	AA	100	germline	1	0.27294067250473	0.517589645170485
14	34016400	34018977	2	neutral	AA	100	germline	1	0.102164323583811	0.301454805122198
14	36724827	36740289	2	neutral	AA	100	somatic	0	0.383952942869725	0.225061635894153
14	38987433	39129168	2	neutral	AA	38.9391	somatic	0	0.00338176243224577	0.0458984605641035
14	39296673	39312135	2	neutral	AA	54.6578	somatic	0	0.0498474534382955	0.283044703030538
14	39397176	39531180	2	neutral	AA	100	somatic	0	0.947981244844331	0.91387178305641
14	41141805	41201076	1	loss	A	-1	germline	1	9.69811693072349e-15	0
14	49550556	49589211	2	neutral	AA	54.5681	somatic	0	0.304863753156536	0.222042014460095
14	49589211	49746408	2	neutral	AA	62.7166	somatic	0	2.80814111459263e-12	1.19556931021947e-09
14	51934281	51962628	2	neutral	AA	54.5678	germline	1	0.0234909492893523	0.0385801764307209
14	56737809	56753271	2	neutral	AA	100	somatic	0	0.948961375558541	0.618387346340907
14	57817572	57830457	2	neutral	AA	100	somatic	0	0.791482966264288	0.823506833803231
14	58008270	58010847	2	neutral	AA	100	germline	1	0.253565683649769	0.496851111710712
14	59234922	59237499	2	neutral	AA	100	somatic	0	0.223852964989629	0.463632229946634
14	61729458	61732035	2	neutral	AA	100	somatic	0	0.310140964290093	0.555647948971904
14	61979427	61984581	2	neutral	AA	100	somatic	0	0.362609395648846	0.492060065647815
14	62000043	62007774	2	neutral	AA	100	somatic	0	0.333872915735305	0.852830989912635
14	64839897	64883706	2	neutral	AA	56.6349	somatic	0	0.172009444786474	0.163750894189152
14	70715457	70841730	2	neutral	AA	54.5873	germline	1	0.462619424502429	0.384587509412858
14	72088998	72091575	2	neutral	AA	100	somatic	0	0.310661907156351	0.556135939839058
14	73565619	73568196	1	loss	A	-1	somatic	0	0.0833579662684443	0.270199145367155
14	76457013	76462167	2	neutral	AA	54.5679	somatic	0	0.633807024190716	0.962282732708889
14	79639608	79647339	1	loss	A	-1	somatic	0	0.0027125633780236	0.00497546258170267
14	84012777	84157089	2	neutral	AA	15.6616	somatic	0	0.391492910831099	0.0908383458000709
14	86414541	86417118	2	neutral	AA	100	somatic	0	0.337970090406652	0.582648600959763
14	89499210	89514672	2	neutral	AA	36.3787	somatic	0	0.504807684887962	0.529469250973781
14	89885760	89888337	2	neutral	AA	100	somatic	0	0.999434716207521	0.963824687019662
14	94575900	94588785	2	neutral	AA	100	somatic	0	0.045173365716097	0.0617171773469594
14	97802304	97871883	2	neutral	AA	100	somatic	0	0.776223176894101	0.801661555167101
14	98008464	98029080	2	neutral	AA	24.2581	somatic	0	0.695557211316111	0.729387302085761
14	99345927	99351081	2	neutral	AA	63.356	somatic	0	0.467321738804753	0.87646756374151
14	99717015	99719592	2	neutral	AA	100	somatic	0	0.497751714647917	0.718334537676292
14	99925752	99928329	6	gain	AAAABB	33.1962	germline	1	0.0832778611272301	0.270060052854113
14	100673082	100706583	2	neutral	AA	22.7311	somatic	0	0.93555955758651	0.856796199483666
14	101711613	101727075	1	loss	A	79.4749	somatic	0	0.000205924817189308	0.000902191429316135
14	103368624	103371201	2	neutral	AA	100	germline	1	0.0896700334170023	0.28099043552739
14	104203572	104255112	2	neutral	AA	11.3889	somatic	0	0.359588375804596	0.281599891498399
15	0	17080356	4	gain	AAAB	-1	somatic	0	NA	NA
15	17080356	17082933	11	gain	-	-1	germline	1	0.0832708707818557	0.270047912337969
15	17082933	20340261	4	gain	AAAB	-1	somatic	0	0.804091707574092	0.999605555921064
15	20340261	20342838	6	gain	AAABBB	100	germline	1	0.0832765901199878	0.270057845457909
15	20342838	20672694	4	gain	AAAB	0.670492	germline	1	9.5345726771948e-15	0
15	26957997	26963151	2	neutral	AA	100	somatic	0	0.0272585454411373	0.0594539704825418
15	39080205	39087936	2	neutral	AA	100	germline	1	0.839617364628945	0.893896884193442
15	42175182	42188067	2	neutral	AA	100	somatic	0	0.462286762538455	0.507858264893076
15	45187695	45216042	2	neutral	AA	100	somatic	0	0.0259893277498169	0.0673950538962866
15	52274445	52472874	2	neutral	AA	89.012	somatic	0	0.65133512543794	0.920045487210215
15	55789473	55797204	1	loss	A	-1	somatic	0	0.00272382951733852	0.00501353956534178
15	59232345	59250384	2	neutral	AA	62.232	somatic	0	0.945772513380135	0.993964048028358
15	60525999	60544038	2	neutral	AA	54.5777	germline	1	0.812930685406032	0.986590426935636
15	65102751	65118213	2	neutral	AA	54.5678	somatic	0	0.607653489423024	0.961705948373834
15	71416401	71421555	1	loss	A	-1	somatic	0	0.0143275479423214	0.0366724376030307
15	72679131	72710055	2	neutral	AA	54.5693	somatic	0	0.0054959215759139	0.0154663255556494
15	75683913	75768954	2	neutral	AA	54.5678	somatic	0	0.245075780364088	0.376212950106349
15	76591017	76601325	1	loss	A	-1	germline	1	0.00273033657774904	0.00502680842433778
15	79356138	79441179	2	neutral	AA	37.4494	somatic	0	0.0797994972153592	0.0245876188721463
15	79680840	79688571	2	neutral	AA	100	somatic	0	0.994232324920438	0.793888687501781
16	845256	847833	3	gain	AAB	49.0969	germline	1	0.083287394182442	0.270076608745457
16	1023069	1025646	4	gain	AABB	100	germline	1	0.0832842163991551	0.270071090032694
16	3875808	3924771	2	neutral	AA	100	somatic	0	8.40777408758468e-09	4.00209180240196e-08
16	11588769	11591346	1	loss	A	-1	somatic	0	0.0832829453133412	0.270068882570634
16	21133977	21139131	2	neutral	AA	54.5678	somatic	0	0.189832838373706	0.389831000939464
16	21559182	21582375	4	gain	AABB	5.06985	germline	1	2.03843627002424e-07	3.05091447660999e-08
16	22615752	22636368	4	gain	AABB	26.5379	germline	1	9.64963596468411e-07	2.25359935268621e-07
16	22636368	22693062	4	gain	AAAB	2.71164	germline	1	2.07649383647844e-15	0
16	22693062	22698216	4	gain	AABB	11.4556	germline	1	0.0143118947660336	0.0366401115970494
16	23035803	23038380	1	loss	A	-1	germline	1	0.083274048152645	0.270053430705006
16	25821540	25834425	2	neutral	AA	56.1367	somatic	0	0.264939084639012	0.587828912807712
16	30581259	31032234	2	neutral	AA	52.6466	somatic	0	9.12855540631028e-10	3.34022824510782e-07
16	34062786	34065363	11	gain	AAAAAAABBBB	29.5273	germline	1	0.0832702353194829	0.270046808674439
16	34075671	34083402	3	gain	AAB	78.3	germline	1	0.00575937288911339	0.0189338778150676
16	34083402	34085979	6	gain	AAAAAA	18.7818	germline	1	0.0832778611272301	0.270060052854113
16	34085979	34096287	2	neutral	AA	16.7697	germline	1	0.00196813355518907	0.00897647395960655
16	34096287	34098864	8	gain	AAAAAABB	31.955	germline	1	0.083274683638588	0.270054534388296
16	34173597	34176174	5	gain	AAABB	1.14056	germline	1	0.0832791321501865	0.270062260263489
16	34191636	34212252	3	gain	AAB	2.08225	somatic	0	0.00179898555771723	0.0205560510350907
16	34900311	34902888	4	gain	-	-1	somatic	0	0.0832835808542838	0.270069986300019
16	34902888	34959582	3	gain	AAA	100	somatic	0	7.47308806512656e-07	8.82596998486029e-07
16	35992959	36008421	3	gain	AAA	11.8531	germline	1	2.21481017561196e-05	1.23161063356747e-05
16	36023883	36088308	2	neutral	AA	47.2197	germline	1	0.230261344582529	0.400678401572563
16	36121809	36126963	4	gain	-	-1	germline	1	0.0143115938913135	0.0366401115970494
16	46401462	46404039	15	gain	AAAAAAAAAAAAAAA	6.66441	germline	1	0.0832695998610384	0.270045705014201
16	46404039	46468464	2	neutral	AA	0.703433	germline	1	2.84337910124486e-07	8.20766828946162e-08
16	57691299	57693876	1	loss	A	-1	somatic	0	0.0833026489094629	0.270103099712552
16	62121162	62126316	2	neutral	AA	36.3786	somatic	0	0.875777689690972	0.875012505141401
16	65321796	65324373	1	loss	A	-1	somatic	0	0.0832772256216447	0.270058949154361
16	70151094	70163979	3	gain	AAB	2.85652	germline	1	0.000107715630437215	9.09412296957735e-05
16	72542550	72588936	2	neutral	AA	37.3195	somatic	0	0.442289623115591	0.236868983511728
16	72661092	72671400	2	neutral	AA	100	somatic	0	0.72366164753966	0.442874051143386
16	74109366	74111943	1	loss	A	-1	somatic	0	0.0832848519479551	0.270072193768658
16	77054877	77060031	1	loss	A	-1	somatic	0	0.014392025064902	0.0368793688147342
16	78338223	78351108	1	loss	A	-1	germline	1	0.000108123518066078	9.13995393582168e-05
16	89591982	89653830	2	neutral	AA	8.10262	somatic	0	0.00557402091687225	0.0428982447439297
17	2989320	3004782	2	neutral	AA	100	somatic	0	0.143707323208659	0.208062882849769
17	3004782	3033129	2	neutral	AA	41.3718	somatic	0	0.568063302207255	0.32247569148005
17	8542755	8547909	2	neutral	AA	100	somatic	0	0.345347950845209	0.621365794696202
17	13804989	13882299	2	neutral	AA	21.8271	somatic	0	0.670054972577344	0.651213194956911
17	14575512	14590974	2	neutral	AA	44.5846	somatic	0	0.181382607264171	0.406885764471535
17	19770744	19822284	2	neutral	AA	55.0709	somatic	0	0.0613707789806847	0.162833042811197
17	21291174	21304059	4	gain	AABB	0.279395	germline	1	0.000107616882003549	9.08606886197427e-05
17	21675147	21855537	3	gain	-	-1	germline	1	2.04145670369766e-07	3.07134924160124e-08
17	21855537	21858114	5	gain	-	-1	germline	1	0.0832810387140852	0.270065571402246
17	21883884	21968925	0	loss	-	-1	germline	1	2.55733154094053e-23	0
17	21976656	21981810	11	gain	-	-1	germline	1	0.0143077832944425	0.036634072119233
17	22126122	22128699	4	gain	-	-1	germline	1	0.0832829453133412	0.270068882570637
17	22128699	22146738	6	gain	AAAABB	0.299421	germline	1	4.59741501748823e-06	1.66437732984637e-06
17	22149315	22159623	5	gain	AAABB	1.57551	germline	1	0.00270126673374192	0.00495931275935091
17	26782761	26842032	3	gain	-	-1	somatic	0	3.48152656889661e-15	1.11022302462516e-16
17	26842032	26847186	1	loss	A	-1	somatic	0	0.0147882626953876	0.0379804947609693
17	26847186	26878110	3	gain	-	-1	germline	1	4.65757984713374e-06	2.81451340455874e-07
17	26937381	26939958	12	gain	AAAAAAAABBBB	4.81602	germline	1	0.0832695998610384	0.270045705014201
17	30318405	30516834	2	neutral	AA	36.0211	somatic	0	0.153592097492323	0.232607622180839
17	35047200	35057508	2	neutral	AA	54.5678	somatic	0	0.649793505486717	0.562706100671465
17	39232248	39270903	2	neutral	AA	100	somatic	0	0.261773954710208	0.285238950272579
17	42376188	42399381	2	neutral	AA	25.3039	somatic	0	0.0217987906056224	0.0495890972809694
17	46973556	47099829	2	neutral	AA	27.3017	somatic	0	0.027908541895915	0.13429283525478
17	57010971	57016125	1	loss	A	-1	germline	1	0.0143120953522802	0.0366476621693499
17	57410406	57423291	2	neutral	AA	100	somatic	0	0.51142766356188	0.770946234526423
17	60739890	60760506	2	neutral	AA	100	somatic	0	0.0180717503865109	0.099432294732859
17	61116132	61172826	2	neutral	AA	59.8741	somatic	0	0.601617010744684	0.679908109930605
17	70045437	70104708	2	neutral	AA	18.6675	somatic	0	0.0469514450454089	0.0476002727882716
17	71169009	71215395	2	neutral	AA	46.131	somatic	0	0.92883972078709	0.965571056794917
17	72818289	72826020	1	loss	A	-1	germline	1	0.0143096884809868	0.0366401115970484
17	75835956	75884919	2	neutral	AA	27.3227	germline	1	0.460607141788538	0.715932298668851
17	78374301	78384609	3	gain	AAB	8.75883	germline	1	0.000533413722132177	0.000672785809513576
17	80742564	80745141	4	gain	AAAA	5.06184	germline	1	0.0832835808542838	0.270069986300019
17	82159914	82172799	2	neutral	AA	36.3786	somatic	0	0.556741769358337	0.43515248390705
18	2491959	2504844	2	neutral	AA	100	germline	1	0.651946104449982	0.799854909303731
18	5306043	5308620	0	loss	-	-1	germline	1	0.0832708707818557	0.270047912337966
18	8583987	8596872	2	neutral	AA	56.1452	somatic	0	0.518090621141305	0.457945317912605
18	9027231	9058155	2	neutral	AA	24.5706	germline	1	0.396322809216332	0.530130021487966
18	12037167	12122208	2	neutral	AA	2.7751	germline	1	0.506801786317687	0.760248951668156
18	12364446	12408255	2	neutral	AA	100	somatic	0	1.72092781689358e-05	8.5873179295759e-05
18	13588521	13611714	2	neutral	AA	27.2892	somatic	0	0.955219161694753	0.508400733404217
18	21347868	21391677	2	neutral	AA	54.5678	somatic	0	0.000357501431171901	0.00229601289183579
18	23352774	23357928	2	neutral	AA	54.5678	somatic	0	0.327671442996487	0.303943332921567
18	24043410	24105258	2	neutral	AA	100	somatic	0	0.00158525249829156	0.00390020083891307
18	24409344	24414498	1	loss	A	-1	somatic	0	0.0164270429073461	0.0430578564287006
18	24414498	24435114	2	neutral	AA	100	somatic	0	0.547429894806373	0.778430797920856
18	29594268	29596845	0	loss	-	-1	germline	1	0.0832721417183863	0.270050119674904
18	29998857	30140592	2	neutral	AA	8.10567	germline	1	0.0734813212966669	0.0530833453795857
18	33588618	33614388	2	neutral	AA	100	somatic	0	0.269269482421782	0.17908848390298
18	34508607	34516338	2	neutral	AA	100	somatic	0	0.652736219797792	0.992857066260253
18	36567630	36570207	2	neutral	AA	100	somatic	0	0.188744572553495	0.421795007491672
18	39335328	39348213	2	neutral	AA	100	somatic	0	0.297689078889926	0.598539642036491
18	40680522	40685676	1	loss	A	-1	germline	1	0.0143519608583014	0.0367047885584777
18	40871220	40873797	1	loss	A	-1	somatic	0	0.0836956001324701	0.270784789525959
18	41079957	41105727	2	neutral	AA	100	somatic	0	0.499539447548219	0.832886393959957
18	41283540	41288694	0	loss	-	-1	germline	1	0.0143090868189558	0.0366398096024694
18	41347965	41350542	1	loss	A	-1	somatic	0	0.0833032845722016	0.270104203544006
18	41469084	41479392	2	neutral	AA	54.5678	somatic	0	0.43742072526964	0.51780381432656
18	41489700	41497431	2	neutral	AA	36.3786	somatic	0	0.773671703075068	0.946800195618485
18	44074431	44079585	1	loss	A	-1	somatic	0	0.0203054152208309	0.0550474502871595
18	46069029	46081914	2	neutral	AA	54.5678	somatic	0	0.41189325462009	0.633565323410725
18	46244265	46257150	2	neutral	AA	54.5686	somatic	0	0.0981778549607086	0.137040361448694
18	48646029	48666645	2	neutral	AA	54.5678	somatic	0	0.707558218015293	0.416435353727216
18	50730822	50735976	2	neutral	AA	100	somatic	0	0.241373975577182	0.495977292229415
18	51127680	51153450	2	neutral	AA	55.4286	somatic	0	0.36818434992292	0.744903938145668
18	53580984	53632524	2	neutral	AA	46.8827	somatic	0	0.0164798963416152	0.00767935608663328
18	57278979	57281556	0	loss	-	-1	germline	1	0.0832676935092748	0.270042394053239
18	58044348	58064964	2	neutral	AA	100	somatic	0	0.21164285629774	0.312405813925301
18	58564902	58572633	2	neutral	AA	54.5678	germline	1	0.549747447961351	0.857983015182692
18	62005197	62007774	1	loss	A	-1	germline	1	0.0832829453133412	0.270068882570634
18	63329775	63358122	2	neutral	AA	100	somatic	0	0.31820788741334	0.367099013881091
18	63724056	63757557	2	neutral	AA	23.3675	somatic	0	0.94525355405707	0.89132645786234
18	66056241	66063972	1	loss	A	-1	germline	1	0.00272128953523638	0.00499888208038879
18	66380943	66411867	2	neutral	AA	100	somatic	0	0.430470170086621	0.202738096948569
18	68599740	68610048	2	neutral	AA	100	germline	1	0.839478091415502	0.938445464854185
18	69079062	69089370	1	loss	A	-1	germline	1	0.000535288475126904	0.000676320822152632
18	69540345	69550653	1	loss	A	-1	germline	1	0.000536984204499136	0.000676789010189416
18	70697418	70707726	2	neutral	AA	100	germline	1	0.346982741282651	0.291530483568006
18	74266563	74269140	2	neutral	AA	100	somatic	0	0.0846133891152465	0.272372872461562
18	77554815	77557392	1	loss	A	-1	somatic	0	0.0854322005871092	0.273781514471735
18	78474804	78490266	2	neutral	AA	21.9306	somatic	0	0.95849042604455	0.988399729540983
18	79518489	79523643	1	loss	A	-1	somatic	0	0.0149975126910039	0.0386152031579824
19	3213519	3252174	2	neutral	AA	9.95377	somatic	0	0.00060555407005508	0.0059983807268259
19	6166761	6223455	2	neutral	AA	50.5557	somatic	0	0.0107796737994462	0.0111746074711582
19	7450107	7452684	14	gain	AAAAAAAAABBBBB	9.51403	germline	1	0.0832695998610384	0.270045705014201
19	8437098	8444829	2	neutral	AA	100	somatic	0	0.0471086613431746	0.0687450830978222
19	8656143	8988576	2	neutral	AA	0.718103	somatic	0	7.88078564571429e-08	4.22534104049799e-06
19	11217681	11220258	1	loss	A	-1	somatic	0	0.0846133891152465	0.272371761879172
19	14508510	14511087	2	neutral	AA	100	germline	1	0.0873945502476313	0.277138397764039
19	15183684	15206877	2	neutral	AA	54.7239	somatic	0	0.000445021594903316	0.00162697977272441
19	16041825	16070172	2	neutral	AA	98.6078	somatic	0	0.000579653463049645	0.00502524442950025
19	17198898	17206629	2	neutral	AA	54.5787	germline	1	0.368662996385366	0.359492014879774
19	21368484	21383946	2	neutral	AA	15.5908	germline	1	0.0269017169681323	0.040796502809066
19	21383946	21564336	2	neutral	AA	0.918441	germline	1	0.00248168440201756	0.0016875680766445
19	21564336	21577221	3	gain	AAB	0.953731	germline	1	0.000533431413238351	0.000673284992828815
19	21577221	21618453	2	neutral	AA	16.6558	somatic	0	0.074471847768617	0.140975381665912
19	24236685	24246993	2	neutral	AA	54.5678	somatic	0	0.239564663289355	0.416400466476631
19	24352650	24404190	4	gain	AABB	0.607296	germline	1	9.26999195234528e-13	3.44169137633799e-15
19	27336816	27347124	3	gain	AAB	1.05719	germline	1	0.000981721185463653	0.00294165280090053
19	27347124	27380625	6	gain	AAAABB	0.157914	germline	1	9.23104884860232e-09	5.58614932089085e-10
19	27380625	27383202	3	gain	AAB	4.08807	germline	1	0.0833140914399342	0.270122969182508
19	27383202	27398664	6	gain	AAAABB	0.250354	germline	1	2.21108790740241e-05	1.22972398443055e-05
19	27576477	27648633	2	neutral	AA	100	somatic	0	0.173493048547119	0.206368098544659
19	29511804	29514381	0	loss	-	-1	germline	1	0.0832702353194829	0.270046808674435
19	34320486	34506030	2	neutral	AA	66.952	somatic	0	8.65751517796234e-10	1.7374370830936e-09
19	35361594	35369325	1	loss	A	-1	germline	1	0.00271406796009776	0.00497810762742246
19	35606409	35647641	2	neutral	AA	54.85	somatic	0	0.516470839691575	0.870217556290974
19	40724331	40732062	2	neutral	AA	100	somatic	0	0.530291812975564	0.663646997539506
19	41708745	41719053	2	neutral	AA	100	somatic	0	0.0675165573637611	0.0980303795108881
19	45079461	45084615	2	neutral	AA	100	somatic	0	0.0312748430198041	0.0830265055302106
19	48653760	48671799	2	neutral	AA	12.7094	somatic	0	0.0772000011153967	0.0241121210851484
19	48934653	48939807	2	neutral	AA	54.5678	somatic	0	0.248910028895005	0.364881602007583
19	50586510	50599395	2	neutral	AA	52.1904	somatic	0	0.0255623377382	0.0361578607598511
19	53769105	53787144	2	neutral	AA	44.0883	somatic	0	0.00824801688875736	0.0175619727958204
19	58173198	58191237	2	neutral	AA	72.5185	somatic	0	0.0621687981938522	0.0216873322247159
20	64425	67002	6	gain	-	-1	germline	1	0.0832778611272301	0.270060052854113
20	306663	316971	2	neutral	AA	100	somatic	0	0.371141461828669	0.132551901828091
20	865872	876180	2	neutral	AA	100	somatic	0	0.398181606914492	0.685838069011088
20	1407042	1409619	1	loss	A	-1	somatic	0	0.0833503345193854	0.270185896208906
20	1582278	1613202	1	loss	A	-1	germline	1	2.06494451092959e-07	3.09593185532364e-08
20	2234259	2236836	3	gain	AAB	100	germline	1	0.0832962924981767	0.270092061579113
20	10753821	10761552	2	neutral	AA	54.5678	somatic	0	0.105187779636326	0.283188171862414
20	14619321	14663130	2	neutral	AA	54.5704	somatic	0	0.140776515275367	0.0816206334724432
20	15686199	15701661	2	neutral	AA	100	somatic	0	0.358502682938344	0.373644769993683
20	20175333	20211411	2	neutral	AA	100	somatic	0	0.290132677443565	0.183520590166734
20	22528134	22538442	2	neutral	AA	55.0715	somatic	0	0.755017915939052	0.769958868233524
20	23942907	24043410	2	neutral	AA	79.7897	somatic	0	0.0854000807655778	0.14582028697359
20	25862772	25867926	2	neutral	AA	5.74399	somatic	0	0.541997803013159	0.834721333119359
20	26334363	26380749	2	neutral	AA	25.707	somatic	0	0.463877631335764	0.548349443267417
20	28779936	28787667	7	gain	-	-1	germline	1	0.0143095882024319	0.0366382996622411
20	28803129	28823745	10	gain	-	-1	germline	1	4.59563530794493e-06	1.66408926727257e-06
20	28870131	28872708	7	gain	-	-1	germline	1	0.0832759546222594	0.270056741764745
20	28942287	28944864	4	gain	-	-1	germline	1	0.0832829453133412	0.270068882570637
20	29205141	29259258	1	loss	A	-1	somatic	0	0.000152393483103676	0.000226471158969788
20	29408724	29411301	4	gain	-	-1	germline	1	0.0832829453133412	0.270068882570637
20	29885469	29893200	6	gain	-	-1	germline	1	0.0143100896014053	0.0366386016459315
20	31166238	31168815	5	gain	-	-1	germline	1	0.083280403188857	0.270064467686034
20	31168815	31184277	3	gain	-	-1	somatic	0	2.25735871857735e-05	1.29810513121997e-05
20	31184277	31189431	15	gain	-	-1	germline	1	0.0143086857233327	0.0366373937242365
20	31189431	31240971	3	gain	AAA	12.7049	germline	1	1.88074346429924e-06	2.0481874285494e-06
20	31240971	31243548	38	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	13.7129	germline	1	0.0832683289559344	0.270043497703603
20	31243548	31246125	2	neutral	AA	43.924	somatic	0	0.100505151825347	0.298802272964081
20	33431421	33547386	2	neutral	AA	100	somatic	0	1.33725689900414e-11	3.91472587679687e-09
20	34418412	34433874	2	neutral	AA	54.5678	somatic	0	0.459773317767824	0.710583695577089
20	35047200	35060085	2	neutral	AA	27.4273	somatic	0	0.478223743978697	0.874272069483228
20	36196542	36250659	2	neutral	AA	54.5678	somatic	0	0.0671529327405087	0.272547904882305
20	37057260	37183533	2	neutral	AA	36.3819	germline	1	3.73540889714924e-06	1.36871244279524e-05
20	38848275	38853429	2	neutral	AA	54.5873	somatic	0	0.282931683425506	0.685342451096715
20	46218495	46226226	2	neutral	AA	56.4051	somatic	0	0.599906365519311	0.580390324239175
20	46422078	46442694	2	neutral	AA	37.3066	somatic	0	0.232053853196285	0.381748517818149
20	46751934	46790589	2	neutral	AA	3.68259	somatic	0	0.386628005671633	0.8714085522353
20	49779909	49782486	2	neutral	AA	100	somatic	0	0.187199849230681	0.41988021334328
20	51125103	51127680	2	neutral	AA	100	somatic	0	0.14262050031751	0.361485478086448
20	52539876	52563069	2	neutral	AA	100	germline	1	0.11957399248316	0.290364388360488
20	62079930	62159817	2	neutral	AA	14.2017	somatic	0	0.466009100553923	0.573948279355011
21	8988576	8996307	8	gain	AAAAABBB	9.36058	germline	1	0.0027005723996014	0.00495851572684491
21	10519314	10521891	3	gain	AAB	32.777	germline	1	0.0836063063890499	0.270630001156989
21	10650741	10653318	4	gain	AAAB	14.2438	germline	1	0.0832829453133412	0.270068882570637
21	10653318	10661049	6	gain	AAAABB	2.62763	germline	1	0.00270097436264525	0.00495906750607256
21	10661049	10691973	4	gain	AAAB	1.4509	germline	1	9.2346302601541e-09	5.58766810598854e-10
21	10691973	10694550	45	gain	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBB	100	germline	1	0.0832670580665435	0.270041290406175
21	10694550	10704858	4	gain	AAAB	2.36698	germline	1	0.000532406232310119	0.000671257143326387
21	10704858	10707435	7	gain	AAAAAAA	2.60995	germline	1	0.0832759546222594	0.270056741764745
21	10707435	10715166	5	gain	AAAAB	5.86101	germline	1	0.00270124845970118	0.00495919013132207
21	10715166	10720320	6	gain	AAAABB	3.28239	germline	1	0.0143096884809868	0.0366373937242365
21	10720320	10738359	5	gain	AAAAB	2.09894	germline	1	4.59854250832963e-06	1.66456939820758e-06
21	15745470	15815049	2	neutral	AA	69.5548	somatic	0	0.579832394271198	0.846474414787441
21	16969545	16974699	1	loss	A	-1	germline	1	0.0144180490015991	0.0368654000028394
21	18698712	18711597	2	neutral	AA	57.4817	somatic	0	0.0170490552912843	0.0531482072284518
21	23368236	23373390	2	neutral	AA	100	somatic	0	0.103948180831048	0.252964646447595
21	24437691	24468615	2	neutral	AA	100	somatic	0	0.418305697255871	0.277688937047205
21	25370565	25373142	2	neutral	AA	100	somatic	0	0.54528970178055	0.753020153111093
21	27553284	27555861	2	neutral	AA	100	somatic	0	0.214410509812001	0.452710083582899
21	28236189	28238766	2	neutral	AA	100	somatic	0	0.141226757542482	0.359539077778269
21	29836506	29839083	2	neutral	AA	100	somatic	0	0.371622002529659	0.613906651117166
21	30207594	30210171	2	neutral	AA	100	somatic	0	0.746406003223169	0.873031878072578
21	30323559	30326136	2	neutral	AA	100	somatic	0	0.111992571096587	0.316829563171943
21	30699801	30702378	2	neutral	AA	100	somatic	0	0.857610824587209	0.921023226529273
21	31127583	31130160	2	neutral	AA	100	somatic	0	0.14213988184856	0.360833675275635
21	31155930	31181700	2	neutral	AA	100	somatic	0	0.094579602808042	0.0709461855207716
21	31784718	31787295	3	gain	AAA	26.7445	germline	1	0.0832899364797891	0.270081023774934
21	31947069	31954800	2	neutral	AA	36.3876	somatic	0	0.960680140489273	0.89310450390274
21	34163289	34165866	2	neutral	AA	100	somatic	0	0.205228046817052	0.441812894392859
21	34660650	34717344	2	neutral	AA	60.3276	germline	1	0.391930697807837	0.270589430609532
21	34825578	34828155	2	neutral	AA	100	somatic	0	0.52227332891328	0.736540876188726
21	37461849	37513389	2	neutral	AA	44.2333	somatic	0	0.57200250098719	0.6480455003687
21	37665432	37668009	2	neutral	AA	100	somatic	0	0.232977487367293	0.474008114575024
21	38180832	38183409	2	neutral	AA	100	somatic	0	0.195567807963498	0.430177475633593
21	39294096	39306981	2	neutral	AA	54.5679	somatic	0	0.178299539721174	0.379470543152792
21	40286241	40288818	2	neutral	AA	100	somatic	0	0.225920760946693	0.466036735972669
21	41804094	41806671	3	gain	AAB	28.6503	germline	1	0.0833020132506535	0.270101995884394
21	42608118	42631311	2	neutral	AA	28.9306	somatic	0	0.600865854332406	0.439271663932744
21	42749853	42752430	2	neutral	AA	100	somatic	0	0.816606741228466	0.904818876620337
21	43334832	43337409	3	gain	AAB	22.9833	germline	1	0.0832924788399974	0.270085438857094
21	44471289	44484174	2	neutral	AA	54.5678	somatic	0	0.0170274533375248	0.0727335778789879
21	45112962	45231504	2	neutral	AA	6.89124	somatic	0	0.0199494581906429	0.0383029639930055
21	45507243	45538167	2	neutral	AA	19.66	somatic	0	0.891643059139688	0.983421584012228
21	45795867	45798444	4	gain	AAAB	7.51215	germline	1	0.0832835808542838	0.270069986300019
21	46045836	46050990	2	neutral	AA	3.99816	somatic	0	0.0296001455655498	0.0847853868321955
22	11619693	11630001	4	gain	AABB	21.1141	germline	1	0.014311995058847	0.0366404135938064
22	12691725	12694302	12	gain	AAAAAAAAAAAA	100	germline	1	0.0832695998610384	0.270045705014201
22	22901799	22904376	3	gain	AAB	14.9283	germline	1	0.0832880297508856	0.270077712497887
22	29120100	29122677	4	gain	AAAA	18.4724	somatic	0	0.0832854875006837	0.270073297507921
22	34709613	34722498	2	neutral	AA	100	somatic	0	0.764820077817427	0.96684226315313
22	36415587	36436203	2	neutral	AA	36.3994	germline	1	0.0226931973740932	0.105151619473066
22	36745443	36753174	1	loss	A	-1	germline	1	0.0143654388137288	0.0367374671755953
22	39977001	39982155	2	neutral	AA	54.5678	somatic	0	0.96157569290583	0.950965453259716
22	41685552	41726784	2	neutral	AA	54.5873	somatic	0	0.0200582168526408	0.0635487253899273
22	41989638	42002523	2	neutral	AA	18.1893	somatic	0	0.381405020383589	0.688114282577427
22	42520500	42551424	3	gain	AAB	7.33952	germline	1	2.22046243463508e-05	1.23765433103218e-05
22	45326853	45329430	3	gain	AAB	11.2966	germline	1	0.0832899364797891	0.270081023774934
22	46025220	46035528	2	neutral	AA	36.3786	somatic	0	0.166560647527067	0.120941934007142
X	5135961	5141115	1	loss	A	-1	somatic	0	0.0144108832398863	0.0369316410542567
X	5241618	5246772	1	loss	A	-1	somatic	0	0.0143631246399715	0.0367650216920363
X	15021333	15023910	1	loss	A	-1	somatic	0	0.083274048152645	0.270053430705006
X	24092373	24097527	1	loss	A	-1	somatic	0	0.0143396995854627	0.0367162836894582
X	26084394	26086971	0	loss	-	-1	somatic	0	0.0832676935092748	0.270042394053239
X	50225730	50228307	0	loss	-	-1	somatic	0	0.0832651517619189	0.270037979484724
X	52364640	52506375	2	neutral	AA	100	germline	1	0.103867180177684	0.0826165627727611
X	57696453	57699030	1	loss	A	-1	somatic	0	0.0832753191284595	0.27005563807487
X	58487592	58497900	1	loss	A	-1	germline	1	0.00271294862521063	0.00498734462446226
X	62566983	62657178	2	neutral	AA	2.28606	germline	1	0.17636542117952	0.189600258683164
X	67903950	67911681	1	loss	A	-1	somatic	0	0.00303712641187983	0.00609988854209575
X	79577760	79603530	2	neutral	AA	100	somatic	0	0.36913091742226	0.406399657489416
X	88427178	88504488	2	neutral	AA	100	somatic	0	0.192285129425834	0.552250638757286
X	100642158	100683390	2	neutral	AA	27.2843	somatic	0	0.672169170125257	0.978346683369317
X	101443605	103293891	2	neutral	AA	17.4847	somatic	0	0.430763403419966	0.268083893534185
X	104005143	104048952	3	gain	AAB	6.15483	germline	1	4.26384464908697e-10	1.0282108497961e-11
X	108772593	108777747	1	loss	A	-1	somatic	0	0.0144958628338876	0.0371973414365177
X	114805350	114807927	1	loss	A	-1	somatic	0	0.0832778611272301	0.27006005285411
X	126772938	126780669	1	loss	A	-1	somatic	0	0.00299047655433068	0.00592424539142167
X	134212737	134220468	1	loss	A	-1	somatic	0	0.00383045160979631	0.00919867333169389
X	135552777	135604317	2	neutral	AA	54.6088	somatic	0	0.454038231292263	0.610103782036332
X	137539644	137609223	2	neutral	AA	54.568	somatic	0	0.00582169824740804	0.00267447630247797
X	144546507	144556815	1	loss	A	-1	germline	1	0.000537709166645036	0.000679503782025193
X	145340223	145342800	0	loss	-	-1	germline	1	0.0832657871928656	0.270039083121914
