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Tmn blocks phage spread via plasmolysis and triggers synergistic defence responses

Tmn blocks phage spread via plasmolysis and triggers synergistic defence responses
Tmn blocks phage spread via plasmolysis and triggers synergistic defence responses

Membrane-associated phage defences remain poorly understood. Here we characterise Tmn, a YobI-family transmembrane P-loop NTPase that protects bacteria from phage infection by establishing a plasmolysis-associated antiviral state. Upon recognising phage T2 RIIB protein, Tmn enhances ATP turnover and selectively exports Mg 2+, causing rapid cytoplasmic collapse that arrests phage replication without detectable membrane depolarisation or gross leakage of the cell content. Cryo-electron microscopy shows that Tmn assembles into a decameric membrane complex with extended cytosolic arms, an uncommon architecture among P-loop NTPases. The cytosolic arms, including a solenoid-like repeat domain, mediate trigger interaction and determine specificity. In addition to its primary defence function, Tmn-driven ATP collapse activates otherwise silent ATP-depletion-sensing defences, including Gabija and Septu type I, providing a mechanistic basis for synergy among defence systems and limiting secondary phage spread. These findings demonstrate that Tmn is a membrane-integrated sensor-effector that couples phage recognition to metabolic collapse and coordinated multi-layered immunity.

bioRxiv
Wu, Yi
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Zhang, Zhiying
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Garushyants, Sofya K.
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Li, Ruizhe
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Doherty, Regan
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Milton, James A.
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Cooper, Matthew J.
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Gençay, Yilmaz Emre
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Amen, Triana
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Bakshi, Somenath
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Patel, Dinshaw J.
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Koonin, Eugene V.
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Nobrega, Franklin L.
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Wu, Yi
9ee1023a-7e89-4260-9030-5c8b9fb2e1d8
Zhang, Zhiying
c36dad67-2c40-48ab-8886-ae6590a5a219
Garushyants, Sofya K.
de07b7b5-3368-4dcc-a64a-22dd974cac78
Li, Ruizhe
d5434f14-e2fc-4719-a05b-4b2bbfc7cee6
Doherty, Regan
b1cfe485-4322-4344-a652-b5c1f8db3fb4
Milton, James A.
9e183221-d0d4-4ddb-aeba-0fdde9d31230
Cooper, Matthew J.
54f7bff0-1f8c-4835-8358-71eef8529e7a
Gençay, Yilmaz Emre
cb911b99-a620-4d93-a49a-05392d9c65da
Amen, Triana
388dc540-e819-4d07-8f1e-ee0f3949a54b
Bakshi, Somenath
1b7bc808-8fb1-4e1e-8065-bf76c7541197
Patel, Dinshaw J.
2832eb71-9e70-46a9-bd9e-f5095bdbf59d
Koonin, Eugene V.
50994a87-40cf-4509-8f39-e2f5975e649b
Nobrega, Franklin L.
6532795d-88a4-4f05-9b26-6af5b8f21a0d

[Unknown type: UNSPECIFIED]

Record type: UNSPECIFIED

Abstract

Membrane-associated phage defences remain poorly understood. Here we characterise Tmn, a YobI-family transmembrane P-loop NTPase that protects bacteria from phage infection by establishing a plasmolysis-associated antiviral state. Upon recognising phage T2 RIIB protein, Tmn enhances ATP turnover and selectively exports Mg 2+, causing rapid cytoplasmic collapse that arrests phage replication without detectable membrane depolarisation or gross leakage of the cell content. Cryo-electron microscopy shows that Tmn assembles into a decameric membrane complex with extended cytosolic arms, an uncommon architecture among P-loop NTPases. The cytosolic arms, including a solenoid-like repeat domain, mediate trigger interaction and determine specificity. In addition to its primary defence function, Tmn-driven ATP collapse activates otherwise silent ATP-depletion-sensing defences, including Gabija and Septu type I, providing a mechanistic basis for synergy among defence systems and limiting secondary phage spread. These findings demonstrate that Tmn is a membrane-integrated sensor-effector that couples phage recognition to metabolic collapse and coordinated multi-layered immunity.

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2026.03.01.708804v1.full - Author's Original
Available under License Creative Commons Attribution.
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Published date: 2 March 2026

Identifiers

Local EPrints ID: 511702
URI: http://eprints.soton.ac.uk/id/eprint/511702
PURE UUID: b1571814-253a-4123-a2f0-91abcfe9ee24
ORCID for Regan Doherty: ORCID iD orcid.org/0000-0002-8451-8303
ORCID for James A. Milton: ORCID iD orcid.org/0000-0003-4245-5532
ORCID for Matthew J. Cooper: ORCID iD orcid.org/0000-0002-2130-2759
ORCID for Triana Amen: ORCID iD orcid.org/0000-0003-4808-7806
ORCID for Franklin L. Nobrega: ORCID iD orcid.org/0000-0002-8238-1083

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Date deposited: 28 May 2026 16:46
Last modified: 29 May 2026 02:17

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Contributors

Author: Yi Wu
Author: Zhiying Zhang
Author: Sofya K. Garushyants
Author: Ruizhe Li
Author: Regan Doherty ORCID iD
Author: James A. Milton ORCID iD
Author: Yilmaz Emre Gençay
Author: Triana Amen ORCID iD
Author: Somenath Bakshi
Author: Dinshaw J. Patel
Author: Eugene V. Koonin

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