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Harmonizing lipidomics: NIST interlaboratory comparison exercise for lipidomics using SRM 1950–Metabolites in Frozen Human Plasma

Harmonizing lipidomics: NIST interlaboratory comparison exercise for lipidomics using SRM 1950–Metabolites in Frozen Human Plasma
Harmonizing lipidomics: NIST interlaboratory comparison exercise for lipidomics using SRM 1950–Metabolites in Frozen Human Plasma
As the lipidomics field continues to advance, self-evaluation within the community is critical. Here, we performed an interlaboratory comparison exercise for lipidomics using Standard Reference Material (SRM) 1950-Metabolites in Frozen Human Plasma, a commercially available reference material. The interlaboratory study comprised 31 diverse laboratories, with each laboratory using a different lipidomics workflow. A total of 1,527 unique lipids were measured across all laboratories and consensus location estimates and associated uncertainties were determined for 339 of these lipids measured at the sum composition level by five or more participating laboratories. These evaluated lipids detected in SRM 1950 serve as community-wide benchmarks for intra- and interlaboratory quality control and method validation. These analyses were performed using nonstandardized laboratory-independent workflows. The consensus locations were also compared with a previous examination of SRM 1950 by the LIPID MAPS consortium. While the central theme of the interlaboratory study was to provide values to help harmonize lipids, lipid mediators, and precursor measurements across the community, it was also initiated to stimulate a discussion regarding areas in need of improvement
0022-2275
2275-2288
Bowden, John A.
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Heckert, Alan
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Ulmer, Candice Z.
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Jones, Christina M.
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Asara, John M.
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Bowden, John A.
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Heckert, Alan
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Bamba, Takeshi
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Leadley, Michael
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Monnin, Cian
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Schuhmann, Kai
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Bowden, John A., Heckert, Alan, Ulmer, Candice Z., Jones, Christina M., Koelmel, Jeremy P., Abdullah, Laila, Ahonen, Linda, Alnouti, Yazen, Armando, Aaron M., Asara, John M., Bamba, Takeshi, Barr, John R., Bergquist, Jonas, Borchers, Christoph H., Brandsma, Joost, Breitkopf, Susanne B., Cajka, Tomas, Cazenave-gassiot, Amaury, Checa, Antonio, Cinel, Michelle A., Colas, Romain A., Cremers, Serge, Dennis, Edward A., Evans, James E., Fauland, Alexander, Fiehn, Oliver, Gardner, Michael S., Garrett, Timothy J., Gotlinger, Katherine H., Han, Jun, Huang, Yingying, Neo, Aveline Huipeng, Hyötyläinen, Tuulia, Izumi, Yoshihiro, Jiang, Hongfeng, Jiang, Houli, Jiang, Jiang, Kachman, Maureen, Kiyonami, Reiko, Klavins, Kristaps, Klose, Christian, Köfeler, Harald C., Kolmert, Johan, Koal, Therese, Koster, Grielof, Kuklenyik, Zsuzsanna, Kurland, Irwin J., Leadley, Michael, Lin, Karen, Maddipati, Krishna Rao, Mcdougall, Danielle, Meikle, Peter J., Mellett, Natalie A., Monnin, Cian, Moseley, M. Arthur, Nandakumar, Renu, Oresic, Matej, Patterson, Rainey, Peake, David, Pierce, Jason S., Post, Martin, Postle, Anthony D., Pugh, Rebecca, Qiu, Yunping, Quehenberger, Oswald, Ramrup, Parsram, Rees, Jon, Rembiesa, Barbara, Reynaud, Denis, Roth, Mary R., Sales, Susanne, Schuhmann, Kai, Schwartzman, Michal Laniado, Serhan, Charles N., Shevchenko, Andrej, Somerville, Stephen E., St. John-williams, Lisa, Surma, Michal A., Takeda, Hiroaki, Thakare, Rhishikesh, Thompson, J. Will, Torta, Federico, Triebl, Alexander, Trötzmüller, Martin, Ubhayasekera, S. J. Kumari, Vuckovic, Dajana, Weir, Jacquelyn M., Welti, Ruth, Wenk, Markus R., Wheelock, Craig E., Yao, Libin, Yuan, Min, Zhao, Xueqing Heather and Zhou, Senlin (2017) Harmonizing lipidomics: NIST interlaboratory comparison exercise for lipidomics using SRM 1950–Metabolites in Frozen Human Plasma. Journal of Lipid Research, 58 (12), 2275-2288. (doi:10.1194/jlr.M079012).

Record type: Article

Abstract

As the lipidomics field continues to advance, self-evaluation within the community is critical. Here, we performed an interlaboratory comparison exercise for lipidomics using Standard Reference Material (SRM) 1950-Metabolites in Frozen Human Plasma, a commercially available reference material. The interlaboratory study comprised 31 diverse laboratories, with each laboratory using a different lipidomics workflow. A total of 1,527 unique lipids were measured across all laboratories and consensus location estimates and associated uncertainties were determined for 339 of these lipids measured at the sum composition level by five or more participating laboratories. These evaluated lipids detected in SRM 1950 serve as community-wide benchmarks for intra- and interlaboratory quality control and method validation. These analyses were performed using nonstandardized laboratory-independent workflows. The consensus locations were also compared with a previous examination of SRM 1950 by the LIPID MAPS consortium. While the central theme of the interlaboratory study was to provide values to help harmonize lipids, lipid mediators, and precursor measurements across the community, it was also initiated to stimulate a discussion regarding areas in need of improvement

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Accepted/In Press date: 6 October 2017
e-pub ahead of print date: 6 October 2017
Published date: 1 December 2017

Identifiers

Local EPrints ID: 419525
URI: https://eprints.soton.ac.uk/id/eprint/419525
ISSN: 0022-2275
PURE UUID: 4e817a42-4c1f-4336-9496-0cf98335b257
ORCID for Anthony D. Postle: ORCID iD orcid.org/0000-0001-7361-0756

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Date deposited: 13 Apr 2018 16:30
Last modified: 14 Mar 2019 05:09

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Contributors

Author: John A. Bowden
Author: Alan Heckert
Author: Candice Z. Ulmer
Author: Christina M. Jones
Author: Jeremy P. Koelmel
Author: Laila Abdullah
Author: Linda Ahonen
Author: Yazen Alnouti
Author: Aaron M. Armando
Author: John M. Asara
Author: Takeshi Bamba
Author: John R. Barr
Author: Jonas Bergquist
Author: Christoph H. Borchers
Author: Joost Brandsma
Author: Susanne B. Breitkopf
Author: Tomas Cajka
Author: Amaury Cazenave-gassiot
Author: Antonio Checa
Author: Michelle A. Cinel
Author: Romain A. Colas
Author: Serge Cremers
Author: Edward A. Dennis
Author: James E. Evans
Author: Alexander Fauland
Author: Oliver Fiehn
Author: Michael S. Gardner
Author: Timothy J. Garrett
Author: Katherine H. Gotlinger
Author: Jun Han
Author: Yingying Huang
Author: Aveline Huipeng Neo
Author: Tuulia Hyötyläinen
Author: Yoshihiro Izumi
Author: Hongfeng Jiang
Author: Houli Jiang
Author: Jiang Jiang
Author: Maureen Kachman
Author: Reiko Kiyonami
Author: Kristaps Klavins
Author: Christian Klose
Author: Harald C. Köfeler
Author: Johan Kolmert
Author: Therese Koal
Author: Grielof Koster
Author: Zsuzsanna Kuklenyik
Author: Irwin J. Kurland
Author: Michael Leadley
Author: Karen Lin
Author: Krishna Rao Maddipati
Author: Danielle Mcdougall
Author: Peter J. Meikle
Author: Natalie A. Mellett
Author: Cian Monnin
Author: M. Arthur Moseley
Author: Renu Nandakumar
Author: Matej Oresic
Author: Rainey Patterson
Author: David Peake
Author: Jason S. Pierce
Author: Martin Post
Author: Rebecca Pugh
Author: Yunping Qiu
Author: Oswald Quehenberger
Author: Parsram Ramrup
Author: Jon Rees
Author: Barbara Rembiesa
Author: Denis Reynaud
Author: Mary R. Roth
Author: Susanne Sales
Author: Kai Schuhmann
Author: Michal Laniado Schwartzman
Author: Charles N. Serhan
Author: Andrej Shevchenko
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Author: Lisa St. John-williams
Author: Michal A. Surma
Author: Hiroaki Takeda
Author: Rhishikesh Thakare
Author: J. Will Thompson
Author: Federico Torta
Author: Alexander Triebl
Author: Martin Trötzmüller
Author: S. J. Kumari Ubhayasekera
Author: Dajana Vuckovic
Author: Jacquelyn M. Weir
Author: Ruth Welti
Author: Markus R. Wenk
Author: Craig E. Wheelock
Author: Libin Yao
Author: Min Yuan
Author: Xueqing Heather Zhao
Author: Senlin Zhou

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