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Assimilation of soil moisture and canopy cover data improves maize simulation using an under-calibrated crop model

Assimilation of soil moisture and canopy cover data improves maize simulation using an under-calibrated crop model
Assimilation of soil moisture and canopy cover data improves maize simulation using an under-calibrated crop model
Parameter calibration is normally required prior to crop model simulation, which can be a time-consuming and data-intensive task. Meanwhile, the growth stages of different hybrids/cultivars of the same crop often show some similarities, which implies that phenological parameters calibrated for one hybrid/cultivar may be useful for the simulation of another. In this study, a data assimilation framework is proposed to reduce the requirement for parameter calibration for maize simulation using AquaCrop. The phenological parameters were uniformly scaled from previous research performed in a different location for a different maize hybrid, and other parameters were taken from default settings in the model documentation. To constrain simulation uncertainties, soil moisture and canopy cover observations were assimilated both separately and jointly in order to update model states. The methodology was tested across a rain-fed field in Nebraska for 6 growing seasons. The results suggested that the under-calibrated model with uniformly scaled phenological parameters captured the temporal dynamics of crop growth, but may lead to large estimation bias. Data assimilation effectively improved model performance, and the joint assimilation outperformed single-variable assimilation. When soil moisture and canopy cover were jointly assimilated, the overall yield estimates (RMSE = 1.24 t/ha, nRMSE = 11.48%, R 2 = 0.695) were improved over the no-assimilation case (RMSE = 2.01 t/ha, nRMSE = 18.61%, R 2 = 0.338). Sensitivity analyses suggested that the improvement was still evident with temporally sparse soil moisture observations and a small ensemble size. Further testing using observations within 90 days after planting demonstrated that the method was able to predict yield around 3 months before harvest (RMSE = 1.7 t/ha, nRMSE = 15.74%). This study indicated that maize yield can be estimated and predicted accurately by monitoring the soil moisture and canopy status, which has potential for regional applications using remote sensing data.
AquaCrop, Calibration, Canopy cover, Data assimilation, Soil moisture, Yield prediction
0378-3774
Lu, Yang
6d9d9d4f-3177-4265-b03b-34d7129ec95c
Chibarabada, Tendai
fe379c2f-a348-4fc7-8373-f48123fade2c
Ziliani, Matteo G.
b2ce8a81-7b89-4277-b446-55a7261e1002
Onema, Jean-Marie Kileshye
98162ae8-5ab5-43a8-93d0-20ccba91fe4f
McCabe, Matthew F.
2756fe3d-e073-45a2-889f-ef34e9cd629c
Sheffield, Justin
dd66575b-a4dc-4190-ad95-df2d6aaaaa6b
Lu, Yang
6d9d9d4f-3177-4265-b03b-34d7129ec95c
Chibarabada, Tendai
fe379c2f-a348-4fc7-8373-f48123fade2c
Ziliani, Matteo G.
b2ce8a81-7b89-4277-b446-55a7261e1002
Onema, Jean-Marie Kileshye
98162ae8-5ab5-43a8-93d0-20ccba91fe4f
McCabe, Matthew F.
2756fe3d-e073-45a2-889f-ef34e9cd629c
Sheffield, Justin
dd66575b-a4dc-4190-ad95-df2d6aaaaa6b

Lu, Yang, Chibarabada, Tendai, Ziliani, Matteo G., Onema, Jean-Marie Kileshye, McCabe, Matthew F. and Sheffield, Justin (2021) Assimilation of soil moisture and canopy cover data improves maize simulation using an under-calibrated crop model. Agricultural Water Management, 252, [106884]. (doi:10.1016/j.agwat.2021.106884).

Record type: Article

Abstract

Parameter calibration is normally required prior to crop model simulation, which can be a time-consuming and data-intensive task. Meanwhile, the growth stages of different hybrids/cultivars of the same crop often show some similarities, which implies that phenological parameters calibrated for one hybrid/cultivar may be useful for the simulation of another. In this study, a data assimilation framework is proposed to reduce the requirement for parameter calibration for maize simulation using AquaCrop. The phenological parameters were uniformly scaled from previous research performed in a different location for a different maize hybrid, and other parameters were taken from default settings in the model documentation. To constrain simulation uncertainties, soil moisture and canopy cover observations were assimilated both separately and jointly in order to update model states. The methodology was tested across a rain-fed field in Nebraska for 6 growing seasons. The results suggested that the under-calibrated model with uniformly scaled phenological parameters captured the temporal dynamics of crop growth, but may lead to large estimation bias. Data assimilation effectively improved model performance, and the joint assimilation outperformed single-variable assimilation. When soil moisture and canopy cover were jointly assimilated, the overall yield estimates (RMSE = 1.24 t/ha, nRMSE = 11.48%, R 2 = 0.695) were improved over the no-assimilation case (RMSE = 2.01 t/ha, nRMSE = 18.61%, R 2 = 0.338). Sensitivity analyses suggested that the improvement was still evident with temporally sparse soil moisture observations and a small ensemble size. Further testing using observations within 90 days after planting demonstrated that the method was able to predict yield around 3 months before harvest (RMSE = 1.7 t/ha, nRMSE = 15.74%). This study indicated that maize yield can be estimated and predicted accurately by monitoring the soil moisture and canopy status, which has potential for regional applications using remote sensing data.

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Accepted/In Press date: 22 March 2021
Published date: 30 June 2021
Keywords: AquaCrop, Calibration, Canopy cover, Data assimilation, Soil moisture, Yield prediction

Identifiers

Local EPrints ID: 448313
URI: http://eprints.soton.ac.uk/id/eprint/448313
ISSN: 0378-3774
PURE UUID: 0c3db41e-7f62-4bd2-aad5-45e41b43fa69
ORCID for Justin Sheffield: ORCID iD orcid.org/0000-0003-2400-0630

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Date deposited: 20 Apr 2021 16:30
Last modified: 17 Mar 2024 03:40

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Contributors

Author: Yang Lu
Author: Tendai Chibarabada
Author: Matteo G. Ziliani
Author: Jean-Marie Kileshye Onema
Author: Matthew F. McCabe

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