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Evidence that the Ser192Tyr/Arg402Gln in cis Tyrosinase gene haplotype is a disease-causing allele in oculocutaneous albinism type 1B (OCA1B)

Evidence that the Ser192Tyr/Arg402Gln in cis Tyrosinase gene haplotype is a disease-causing allele in oculocutaneous albinism type 1B (OCA1B)
Evidence that the Ser192Tyr/Arg402Gln in cis Tyrosinase gene haplotype is a disease-causing allele in oculocutaneous albinism type 1B (OCA1B)
Oculocutaneous albinism type 1 (OCA1) is caused by pathogenic variants in the TYR (tyrosinase) gene which encodes the critical and rate-limiting enzyme in melanin synthesis. It is the most common OCA subtype found in Caucasians, accounting for ~50% of cases worldwide. The apparent 'missing heritability' in OCA is well described, with ~25-30% of clinically diagnosed individuals lacking two clearly pathogenic variants. Here we undertook empowered genetic studies in an extensive multigenerational Amish family, alongside a review of previously published literature, a retrospective analysis of in-house datasets, and tyrosinase activity studies. Together this provides irrefutable evidence of the pathogenicity of two common TYR variants, p.(Ser192Tyr) and p.(Arg402Gln) when inherited in cis alongside a pathogenic TYR variant in trans. We also show that homozygosity for the p.(Ser192Tyr)/p.(Arg402Gln) TYR haplotype results in a very mild, but fully penetrant, albinism phenotype. Together these data underscore the importance of including the TYR p.(Ser192Tyr)/p.(Arg402Gln) in cis haplotype as a pathogenic allele causative of OCA, which would likely increase molecular diagnoses in this missing heritability albinism cohort by 25-50%.
2
Lin, Siying
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Sanchez-Bretano, Aida
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Leslie, Joseph S
87a08ee0-8585-4ace-b4ed-57718cc3b743
Williams, Katie B
0378058f-50a8-470a-8679-9f830691ab61
Lee, Helena
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Thomas, Nicholas
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Callaway, Jonathan L
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Deline, James
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Ratnayaka, J. Arjuna
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Baralle, Diana
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Schmitt, Melanie A
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Norman, Chelsea S
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Hammond, Sheri
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Harlalka, V. Gaurav
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Ennis, Sarah
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Cross, Harold E.
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Wenger, Olivia
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Crosby, Andrew H.
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Baple, Emma L.
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Self, James
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Lin, Siying
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Sanchez-Bretano, Aida
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Leslie, Joseph S
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Williams, Katie B
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Lee, Helena
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Thomas, Nicholas
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Callaway, Jonathan L
4a05f8f5-b2f9-4301-ba81-6b05121274a5
Deline, James
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Ratnayaka, J. Arjuna
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Baralle, Diana
faac16e5-7928-4801-9811-8b3a9ea4bb91
Schmitt, Melanie A
ce24a27d-6d00-4be7-8f04-061cfb46511b
Norman, Chelsea S
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Hammond, Sheri
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Harlalka, V. Gaurav
34769fa4-7571-4d82-8cc3-1a8456dd113b
Ennis, Sarah
7b57f188-9d91-4beb-b217-09856146f1e9
Cross, Harold E.
aca7de15-2441-4961-9f01-5c1973d56b79
Wenger, Olivia
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Crosby, Andrew H.
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Baple, Emma L.
3069a362-2742-42a5-a7a7-e92a9af6fa88
Self, James
0f6efc58-ae24-4667-b8d6-6fafa849e389

Lin, Siying, Sanchez-Bretano, Aida, Leslie, Joseph S, Williams, Katie B, Lee, Helena, Thomas, Nicholas, Callaway, Jonathan L, Deline, James, Ratnayaka, J. Arjuna, Baralle, Diana, Schmitt, Melanie A, Norman, Chelsea S, Hammond, Sheri, Harlalka, V. Gaurav, Ennis, Sarah, Cross, Harold E., Wenger, Olivia, Crosby, Andrew H., Baple, Emma L. and Self, James (2022) Evidence that the Ser192Tyr/Arg402Gln in cis Tyrosinase gene haplotype is a disease-causing allele in oculocutaneous albinism type 1B (OCA1B). npj Genomic Medicine, 7 (1), 2, [2]. (doi:10.1038/s41525-021-00275-9).

Record type: Article

Abstract

Oculocutaneous albinism type 1 (OCA1) is caused by pathogenic variants in the TYR (tyrosinase) gene which encodes the critical and rate-limiting enzyme in melanin synthesis. It is the most common OCA subtype found in Caucasians, accounting for ~50% of cases worldwide. The apparent 'missing heritability' in OCA is well described, with ~25-30% of clinically diagnosed individuals lacking two clearly pathogenic variants. Here we undertook empowered genetic studies in an extensive multigenerational Amish family, alongside a review of previously published literature, a retrospective analysis of in-house datasets, and tyrosinase activity studies. Together this provides irrefutable evidence of the pathogenicity of two common TYR variants, p.(Ser192Tyr) and p.(Arg402Gln) when inherited in cis alongside a pathogenic TYR variant in trans. We also show that homozygosity for the p.(Ser192Tyr)/p.(Arg402Gln) TYR haplotype results in a very mild, but fully penetrant, albinism phenotype. Together these data underscore the importance of including the TYR p.(Ser192Tyr)/p.(Arg402Gln) in cis haplotype as a pathogenic allele causative of OCA, which would likely increase molecular diagnoses in this missing heritability albinism cohort by 25-50%.

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Lin et al OCA paper Fig 1 3 Nov 2021 - Accepted Manuscript
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Lin et al OCA paper Supplemental material 3 Nov 2021 - Accepted Manuscript
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Lin et al OCA paper Table 1 3 Nov 2021 - Accepted Manuscript
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More information

Accepted/In Press date: 19 November 2021
Published date: 13 January 2022
Additional Information: Funding Information: We would like to thank family members for their involvement in this study, and to acknowledge Dr. Caroline Wright for her assistance with this work and helpful comments on the manuscript. The work was supported by University of Exeter Vice Chancellor Scholarship (S.L.), the Gift of Sight Appeal (J.E.S., H.L., J.A.R., A.S.B., C.S.N.), MRC (Proximity to Discovery and Confidence in Concept grants MC_PC_18047, MC_PC_15054, MC_PC_15047 to University of Exeter, E.L.B. and A.H.C., G1001931 to E.L.B. and G1002279 to A.H.C.). Publisher Copyright: © 2022, The Author(s).

Identifiers

Local EPrints ID: 454189
URI: http://eprints.soton.ac.uk/id/eprint/454189
PURE UUID: dc3283fb-8ff7-417a-a379-bf7224f6c93e
ORCID for Helena Lee: ORCID iD orcid.org/0000-0002-2573-9536
ORCID for J. Arjuna Ratnayaka: ORCID iD orcid.org/0000-0002-1027-6938
ORCID for Diana Baralle: ORCID iD orcid.org/0000-0003-3217-4833
ORCID for Sarah Ennis: ORCID iD orcid.org/0000-0003-2648-0869
ORCID for James Self: ORCID iD orcid.org/0000-0002-1030-9963

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Date deposited: 02 Feb 2022 17:33
Last modified: 17 Mar 2024 03:38

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Contributors

Author: Siying Lin
Author: Aida Sanchez-Bretano
Author: Joseph S Leslie
Author: Katie B Williams
Author: Helena Lee ORCID iD
Author: Nicholas Thomas
Author: Jonathan L Callaway
Author: James Deline
Author: Diana Baralle ORCID iD
Author: Melanie A Schmitt
Author: Chelsea S Norman
Author: Sheri Hammond
Author: V. Gaurav Harlalka
Author: Sarah Ennis ORCID iD
Author: Harold E. Cross
Author: Olivia Wenger
Author: Andrew H. Crosby
Author: Emma L. Baple
Author: James Self ORCID iD

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