Exploring healthy retinal aging with deep learning
Exploring healthy retinal aging with deep learning
Purpose: To study the individual course of retinal changes caused by healthy aging using deep learning. Design: Retrospective analysis of a large data set of retinal OCT images. Participants: A total of 85 709 adults between the age of 40 and 75 years of whom OCT images were acquired in the scope of the UK Biobank population study. Methods: We created a counterfactual generative adversarial network (GAN), a type of neural network that learns from cross-sectional, retrospective data. It then synthesizes high-resolution counterfactual OCT images and longitudinal time series. These counterfactuals allow visualization and analysis of hypothetical scenarios in which certain characteristics of the imaged subject, such as age or sex, are altered, whereas other attributes, crucially the subject's identity and image acquisition settings, remain fixed. Main Outcome Measures: Using our counterfactual GAN, we investigated subject-specific changes in the retinal layer structure as a function of age and sex. In particular, we measured changes in the retinal nerve fiber layer (RNFL), combined ganglion cell layer plus inner plexiform layer (GCIPL), inner nuclear layer to the inner boundary of the retinal pigment epithelium (INL-RPE), and retinal pigment epithelium (RPE). Results: Our counterfactual GAN is able to smoothly visualize the individual course of retinal aging. Across all counterfactual images, the RNFL, GCIPL, INL-RPE, and RPE changed by −0.1 μm ± 0.1 μm, −0.5 μm ± 0.2 μm, −0.2 μm ± 0.1 μm, and 0.1 μm ± 0.1 μm, respectively, per decade of age. These results agree well with previous studies based on the same cohort from the UK Biobank population study. Beyond population-wide average measures, our counterfactual GAN allows us to explore whether the retinal layers of a given eye will increase in thickness, decrease in thickness, or stagnate as a subject ages. Conclusion: This study demonstrates how counterfactual GANs can aid research into retinal aging by generating high-resolution, high-fidelity OCT images, and longitudinal time series. Ultimately, we envision that they will enable clinical experts to derive and explore hypotheses for potential imaging biomarkers for healthy and pathologic aging that can be refined and tested in prospective clinical trials. Financial Disclosure(s): Proprietary or commercial disclosure may be found after the references.
Aging, retina, retinal aging, Biomarker discovery, Deep learning, Machine learning, Retina
Lotery, Andrew
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Menten, Martin
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Holland, Robbie
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Leingang, Oliver
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Bogunovic, Hrvoje
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Hagag, Ahmed M.
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Kaye, Rebecca
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Riedl, Sophie
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Traber, Ghislaine
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Hassan, osama
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Pawlowski, Nick
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Glocker, Ben
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Fritsche, Lars G.
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Scholl, Hendrik P.N.
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Sivaprasad, Sobha
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Schmidt-Erfurth, Ursula
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Rueckert, Daniel
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September 2023
Lotery, Andrew
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Menten, Martin
a76b276b-c622-44f9-9541-2bf00e6d75c3
Holland, Robbie
3a5df307-ca67-4d04-a0d3-f483569cba29
Leingang, Oliver
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Bogunovic, Hrvoje
d94f0d97-5a27-44d7-912d-9e043c2d449b
Hagag, Ahmed M.
25260e22-2a8b-423b-a8ec-8304e2a83fc7
Kaye, Rebecca
5736c211-ec31-441c-ac72-db1191ca935c
Riedl, Sophie
2a16668f-5046-4305-a936-753987cc55aa
Traber, Ghislaine
d045af04-898f-4251-b5b3-4e191a8e55aa
Hassan, osama
ab43303c-1971-4e36-b79f-524e6d63ad6a
Pawlowski, Nick
636b99cf-75ab-49c2-8096-07ca1fd811d0
Glocker, Ben
deb8c4db-2b1f-4c45-98b3-0d3069a21482
Fritsche, Lars G.
bf863a60-5c27-4732-ada8-792dda69f03b
Scholl, Hendrik P.N.
2c38ca3c-90a8-455d-a22c-b52508a9890e
Sivaprasad, Sobha
7cd590d6-18f0-4ae1-8ace-4b35833c2f03
Schmidt-Erfurth, Ursula
af993078-6680-4d2a-bc50-ebf6abc3857f
Rueckert, Daniel
3c5b51eb-7e44-4a00-ba79-cafb7ab3d970
Lotery, Andrew, Menten, Martin, Holland, Robbie, Leingang, Oliver, Bogunovic, Hrvoje, Hagag, Ahmed M., Kaye, Rebecca, Riedl, Sophie, Traber, Ghislaine, Hassan, osama, Pawlowski, Nick, Glocker, Ben, Fritsche, Lars G., Scholl, Hendrik P.N., Sivaprasad, Sobha, Schmidt-Erfurth, Ursula and Rueckert, Daniel
(2023)
Exploring healthy retinal aging with deep learning.
Ophthalmology Science, 3 (3), [100294].
(doi:10.1016/j.xops.2023.100294).
Abstract
Purpose: To study the individual course of retinal changes caused by healthy aging using deep learning. Design: Retrospective analysis of a large data set of retinal OCT images. Participants: A total of 85 709 adults between the age of 40 and 75 years of whom OCT images were acquired in the scope of the UK Biobank population study. Methods: We created a counterfactual generative adversarial network (GAN), a type of neural network that learns from cross-sectional, retrospective data. It then synthesizes high-resolution counterfactual OCT images and longitudinal time series. These counterfactuals allow visualization and analysis of hypothetical scenarios in which certain characteristics of the imaged subject, such as age or sex, are altered, whereas other attributes, crucially the subject's identity and image acquisition settings, remain fixed. Main Outcome Measures: Using our counterfactual GAN, we investigated subject-specific changes in the retinal layer structure as a function of age and sex. In particular, we measured changes in the retinal nerve fiber layer (RNFL), combined ganglion cell layer plus inner plexiform layer (GCIPL), inner nuclear layer to the inner boundary of the retinal pigment epithelium (INL-RPE), and retinal pigment epithelium (RPE). Results: Our counterfactual GAN is able to smoothly visualize the individual course of retinal aging. Across all counterfactual images, the RNFL, GCIPL, INL-RPE, and RPE changed by −0.1 μm ± 0.1 μm, −0.5 μm ± 0.2 μm, −0.2 μm ± 0.1 μm, and 0.1 μm ± 0.1 μm, respectively, per decade of age. These results agree well with previous studies based on the same cohort from the UK Biobank population study. Beyond population-wide average measures, our counterfactual GAN allows us to explore whether the retinal layers of a given eye will increase in thickness, decrease in thickness, or stagnate as a subject ages. Conclusion: This study demonstrates how counterfactual GANs can aid research into retinal aging by generating high-resolution, high-fidelity OCT images, and longitudinal time series. Ultimately, we envision that they will enable clinical experts to derive and explore hypotheses for potential imaging biomarkers for healthy and pathologic aging that can be refined and tested in prospective clinical trials. Financial Disclosure(s): Proprietary or commercial disclosure may be found after the references.
Text
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Accepted/In Press date: 17 February 2023
e-pub ahead of print date: 1 March 2023
Published date: September 2023
Additional Information:
Funding Information:
D.R.: Grant – EU Commision, Innovate UK, German Federal Ministry of Education and Research, Engineering and Physical Sciences Research Council, German Research Foundation; Consultant – HeartFlow, IXICO.
Publisher Copyright:
© 2023 American Academy of Ophthalmology
Keywords:
Aging, retina, retinal aging, Biomarker discovery, Deep learning, Machine learning, Retina
Identifiers
Local EPrints ID: 476645
URI: http://eprints.soton.ac.uk/id/eprint/476645
PURE UUID: f6824709-b4b6-4d5d-9d8a-6d85a8edfe34
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Date deposited: 10 May 2023 17:06
Last modified: 17 Mar 2024 04:01
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Contributors
Author:
Martin Menten
Author:
Robbie Holland
Author:
Oliver Leingang
Author:
Hrvoje Bogunovic
Author:
Ahmed M. Hagag
Author:
Rebecca Kaye
Author:
Sophie Riedl
Author:
Ghislaine Traber
Author:
osama Hassan
Author:
Nick Pawlowski
Author:
Ben Glocker
Author:
Lars G. Fritsche
Author:
Hendrik P.N. Scholl
Author:
Sobha Sivaprasad
Author:
Ursula Schmidt-Erfurth
Author:
Daniel Rueckert
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