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Exploring healthy retinal aging with deep learning

Exploring healthy retinal aging with deep learning
Exploring healthy retinal aging with deep learning
Purpose
To study the individual course of retinal changes caused by healthy aging using deep learning.

Design
Retrospective analysis of a large dataset of retinal optical coherence tomography (OCT) images.

Participants
Eighty-five thousand seven hundred and nine adults between the age of 40 and 75 years of whom OCT images were acquired in the scope of the UK Biobank population study.

Methods
We created a counterfactual generative adversarial network (GAN), a type of neural network, that learns from cross-sectional, retrospective data. It then synthesizes high-resolution counterfactual OCT images and longitudinal time series. These counterfactuals allow visualization and analysis of hypothetical scenarios in which certain characteristics of the imaged subject, such as age or sex, are altered while other attributes, crucially the subject’s identity and image acquisition settings, remain fixed.

Main Outcome Measures
Using our counterfactual GAN, we investigated subject-specific changes to the retinal layer structure as a function of age and sex. In particular, we measured changes to the retinal nerve fiber layer (RNFL), combined ganglion cell layer plus inner plexiform layer (GCIPL), inner nuclear layer to inner boundary of retinal pigment epithelium (INL-RPE) and retinal pigment epithelium (RPE).

Results
Our counterfactual GAN is able to smoothly visualize the individual course of retinal aging. Across all counterfactual images, the RNFL, GCIPL, INL-RPE and RPE changed by −0.1μm ± 0.1μm, −0.5μm ± 0.2μm, −0.2μm ± 0.1μm and 0.1μm ± 0.1μm, respectively, per decade of age. These results agree well with previous studies based on the same cohort from the UK Biobank population study. Beyond population-wide average measures, our counterfactual GAN allows us to explore whether the retinal layers of a given eye will increase in thickness, decrease in thickness or stagnate as a subject ages.

Conclusions
This study demonstrates how counterfactual GANs can aid research into retinal aging by generating high-resolution, high-fidelity OCT images and longitudinal time series. Ultimately, we envision that they will enable clinical experts to derive and explore hypotheses for potential imaging biomarkers for healthy and pathological aging that can be refined and tested in prospective clinical trials.
retina, Aging, retinal aging
Lotery, Andrew
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Menten, Martin
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Holland, Robbie
3a5df307-ca67-4d04-a0d3-f483569cba29
Leingang, Oliver
523e1226-ff2d-48bb-b77a-fcc1f7cb3fc7
Bogunovic, Hrvoje
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Hagag, Ahmed M.
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Kaye, Rebecca
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Riedl, Sophie
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Traber, Ghislaine
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Hassan, osama
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Pawlowski, Nick
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Glocker, Ben
deb8c4db-2b1f-4c45-98b3-0d3069a21482
Fritsche, Lars G.
bf863a60-5c27-4732-ada8-792dda69f03b
Scholl, Hendrik P.N.
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Sivaprasad, Sobha
7cd590d6-18f0-4ae1-8ace-4b35833c2f03
Schmidt-Erfurth, Ursula
af993078-6680-4d2a-bc50-ebf6abc3857f
Rueckert, Daniel
3c5b51eb-7e44-4a00-ba79-cafb7ab3d970
Lotery, Andrew
5ecc2d2d-d0b4-468f-ad2c-df7156f8e514
Menten, Martin
a76b276b-c622-44f9-9541-2bf00e6d75c3
Holland, Robbie
3a5df307-ca67-4d04-a0d3-f483569cba29
Leingang, Oliver
523e1226-ff2d-48bb-b77a-fcc1f7cb3fc7
Bogunovic, Hrvoje
d94f0d97-5a27-44d7-912d-9e043c2d449b
Hagag, Ahmed M.
25260e22-2a8b-423b-a8ec-8304e2a83fc7
Kaye, Rebecca
5736c211-ec31-441c-ac72-db1191ca935c
Riedl, Sophie
2a16668f-5046-4305-a936-753987cc55aa
Traber, Ghislaine
d045af04-898f-4251-b5b3-4e191a8e55aa
Hassan, osama
ab43303c-1971-4e36-b79f-524e6d63ad6a
Pawlowski, Nick
636b99cf-75ab-49c2-8096-07ca1fd811d0
Glocker, Ben
deb8c4db-2b1f-4c45-98b3-0d3069a21482
Fritsche, Lars G.
bf863a60-5c27-4732-ada8-792dda69f03b
Scholl, Hendrik P.N.
2c38ca3c-90a8-455d-a22c-b52508a9890e
Sivaprasad, Sobha
7cd590d6-18f0-4ae1-8ace-4b35833c2f03
Schmidt-Erfurth, Ursula
af993078-6680-4d2a-bc50-ebf6abc3857f
Rueckert, Daniel
3c5b51eb-7e44-4a00-ba79-cafb7ab3d970

Lotery, Andrew, Menten, Martin, Holland, Robbie, Leingang, Oliver, Bogunovic, Hrvoje, Hagag, Ahmed M., Kaye, Rebecca, Riedl, Sophie, Traber, Ghislaine, Hassan, osama, Pawlowski, Nick, Glocker, Ben, Fritsche, Lars G., Scholl, Hendrik P.N., Sivaprasad, Sobha, Schmidt-Erfurth, Ursula and Rueckert, Daniel (2023) Exploring healthy retinal aging with deep learning. Ophthalmology Science, 3 (3), [100294]. (doi:10.1016/j.xops.2023.100294).

Record type: Article

Abstract

Purpose
To study the individual course of retinal changes caused by healthy aging using deep learning.

Design
Retrospective analysis of a large dataset of retinal optical coherence tomography (OCT) images.

Participants
Eighty-five thousand seven hundred and nine adults between the age of 40 and 75 years of whom OCT images were acquired in the scope of the UK Biobank population study.

Methods
We created a counterfactual generative adversarial network (GAN), a type of neural network, that learns from cross-sectional, retrospective data. It then synthesizes high-resolution counterfactual OCT images and longitudinal time series. These counterfactuals allow visualization and analysis of hypothetical scenarios in which certain characteristics of the imaged subject, such as age or sex, are altered while other attributes, crucially the subject’s identity and image acquisition settings, remain fixed.

Main Outcome Measures
Using our counterfactual GAN, we investigated subject-specific changes to the retinal layer structure as a function of age and sex. In particular, we measured changes to the retinal nerve fiber layer (RNFL), combined ganglion cell layer plus inner plexiform layer (GCIPL), inner nuclear layer to inner boundary of retinal pigment epithelium (INL-RPE) and retinal pigment epithelium (RPE).

Results
Our counterfactual GAN is able to smoothly visualize the individual course of retinal aging. Across all counterfactual images, the RNFL, GCIPL, INL-RPE and RPE changed by −0.1μm ± 0.1μm, −0.5μm ± 0.2μm, −0.2μm ± 0.1μm and 0.1μm ± 0.1μm, respectively, per decade of age. These results agree well with previous studies based on the same cohort from the UK Biobank population study. Beyond population-wide average measures, our counterfactual GAN allows us to explore whether the retinal layers of a given eye will increase in thickness, decrease in thickness or stagnate as a subject ages.

Conclusions
This study demonstrates how counterfactual GANs can aid research into retinal aging by generating high-resolution, high-fidelity OCT images and longitudinal time series. Ultimately, we envision that they will enable clinical experts to derive and explore hypotheses for potential imaging biomarkers for healthy and pathological aging that can be refined and tested in prospective clinical trials.

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Accepted/In Press date: 17 February 2023
e-pub ahead of print date: 1 March 2023
Published date: 14 April 2023
Keywords: retina, Aging, retinal aging

Identifiers

Local EPrints ID: 476645
URI: http://eprints.soton.ac.uk/id/eprint/476645
PURE UUID: f6824709-b4b6-4d5d-9d8a-6d85a8edfe34
ORCID for Andrew Lotery: ORCID iD orcid.org/0000-0001-5541-4305
ORCID for Rebecca Kaye: ORCID iD orcid.org/0000-0002-1504-3201

Catalogue record

Date deposited: 10 May 2023 17:06
Last modified: 11 May 2023 01:54

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Contributors

Author: Andrew Lotery ORCID iD
Author: Martin Menten
Author: Robbie Holland
Author: Oliver Leingang
Author: Hrvoje Bogunovic
Author: Ahmed M. Hagag
Author: Rebecca Kaye ORCID iD
Author: Sophie Riedl
Author: Ghislaine Traber
Author: osama Hassan
Author: Nick Pawlowski
Author: Ben Glocker
Author: Lars G. Fritsche
Author: Hendrik P.N. Scholl
Author: Sobha Sivaprasad
Author: Ursula Schmidt-Erfurth
Author: Daniel Rueckert

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