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TIGRE v3: efficient and easy to use iterative computed tomographic reconstruction toolbox for real datasets

TIGRE v3: efficient and easy to use iterative computed tomographic reconstruction toolbox for real datasets
TIGRE v3: efficient and easy to use iterative computed tomographic reconstruction toolbox for real datasets
Computed Tomography (CT) has been widely adopted in medicine and it is increasingly being used in scientific and industrial applications. Parallelly, research in different mathematical areas concerning discrete inverse problems has led to the development of new sophisticated numerical solvers that can be applied in the context of CT. The Tomographic Iterative GPU-based Reconstruction (TIGRE) toolbox was born almost a decade ago precisely in the gap between mathematics and high performance computing for real CT data, providing user-friendly open-source software tools for image reconstruction. However, since its inception, the tools' features and codebase have had over a twenty-fold increase, and are now including greater geometric flexibility, a variety of modern algorithms for image reconstruction, high-performance computing features and support for other CT modalities, like proton CT. The purpose of this work is two-fold: first, it provides a structured overview of the current version of the TIGRE toolbox, providing appropriate descriptions and references, and serving as a comprehensive and peer-reviewed guide for the user; second, it is an opportunity to illustrate the performance of several of the available solvers showcasing real CT acquisitions, which are typically not be openly available to algorithm developers.
CBCT, inverse problems, medical imaging, software, tomography
2631-8695
Biguri, Ander
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Sadakane, Tomoyuki
d2109be8-cd37-4a47-a7fa-09037d4ff856
Lindroos, Reuben
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Liu, Yi
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Sabaté Landman, Malena
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Du, Yi
9e6ed0dd-8eea-4390-93d8-95aefda6d4c6
Lohvithee, Manasavee
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Kaser, Stefanie
99dd303b-1c51-4bc3-ac50-9b94438ac80b
Hatamikia, Sepideh
e9720a7c-832c-4fc3-96dd-fa5c093c8839
Bryll, Robert
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Valat, Emilien
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Wonglee, Sarinrat
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Blumensath, Thomas
470d9055-0373-457e-bf80-4389f8ec4ead
Schönlieb, Carola-Bibiane
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Biguri, Ander
8c9306b0-48a0-40fd-891f-03c9ed80cb77
Sadakane, Tomoyuki
d2109be8-cd37-4a47-a7fa-09037d4ff856
Lindroos, Reuben
82909dc6-cec1-45a7-bf78-12c4f0409c73
Liu, Yi
2e3764c0-9e13-45fe-bee7-f9adba7d9733
Sabaté Landman, Malena
28aff6de-e8d4-42af-ab4a-706bda8ee206
Du, Yi
9e6ed0dd-8eea-4390-93d8-95aefda6d4c6
Lohvithee, Manasavee
ae1e564a-a10b-44f0-9876-b13784cc71f8
Kaser, Stefanie
99dd303b-1c51-4bc3-ac50-9b94438ac80b
Hatamikia, Sepideh
e9720a7c-832c-4fc3-96dd-fa5c093c8839
Bryll, Robert
2676e59b-5ddf-43f5-97d2-6eada1506ebf
Valat, Emilien
7aef60eb-d285-4e17-afc3-1689767d62cf
Wonglee, Sarinrat
235bce24-d640-4951-910d-b1edd74eb8a7
Blumensath, Thomas
470d9055-0373-457e-bf80-4389f8ec4ead
Schönlieb, Carola-Bibiane
418527c2-3375-4c0d-919f-ce89a6989bc9

Biguri, Ander, Sadakane, Tomoyuki, Lindroos, Reuben, Liu, Yi, Sabaté Landman, Malena, Du, Yi, Lohvithee, Manasavee, Kaser, Stefanie, Hatamikia, Sepideh, Bryll, Robert, Valat, Emilien, Wonglee, Sarinrat, Blumensath, Thomas and Schönlieb, Carola-Bibiane (2025) TIGRE v3: efficient and easy to use iterative computed tomographic reconstruction toolbox for real datasets. Engineering Research Express, 7 (1), [015011]. (doi:10.1088/2631-8695/adbb3a).

Record type: Article

Abstract

Computed Tomography (CT) has been widely adopted in medicine and it is increasingly being used in scientific and industrial applications. Parallelly, research in different mathematical areas concerning discrete inverse problems has led to the development of new sophisticated numerical solvers that can be applied in the context of CT. The Tomographic Iterative GPU-based Reconstruction (TIGRE) toolbox was born almost a decade ago precisely in the gap between mathematics and high performance computing for real CT data, providing user-friendly open-source software tools for image reconstruction. However, since its inception, the tools' features and codebase have had over a twenty-fold increase, and are now including greater geometric flexibility, a variety of modern algorithms for image reconstruction, high-performance computing features and support for other CT modalities, like proton CT. The purpose of this work is two-fold: first, it provides a structured overview of the current version of the TIGRE toolbox, providing appropriate descriptions and references, and serving as a comprehensive and peer-reviewed guide for the user; second, it is an opportunity to illustrate the performance of several of the available solvers showcasing real CT acquisitions, which are typically not be openly available to algorithm developers.

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More information

Accepted/In Press date: 27 February 2025
e-pub ahead of print date: 7 March 2025
Published date: 31 March 2025
Keywords: CBCT, inverse problems, medical imaging, software, tomography

Identifiers

Local EPrints ID: 500080
URI: http://eprints.soton.ac.uk/id/eprint/500080
ISSN: 2631-8695
PURE UUID: 880eca23-4db0-4334-b2d2-3563d1f0baa3
ORCID for Thomas Blumensath: ORCID iD orcid.org/0000-0002-7489-265X

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Date deposited: 15 Apr 2025 16:34
Last modified: 22 Aug 2025 02:01

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Contributors

Author: Ander Biguri
Author: Tomoyuki Sadakane
Author: Reuben Lindroos
Author: Yi Liu
Author: Malena Sabaté Landman
Author: Yi Du
Author: Manasavee Lohvithee
Author: Stefanie Kaser
Author: Sepideh Hatamikia
Author: Robert Bryll
Author: Emilien Valat
Author: Sarinrat Wonglee
Author: Carola-Bibiane Schönlieb

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