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Optimizing plankton image classification with metadata-enhanced representation learning

Optimizing plankton image classification with metadata-enhanced representation learning
Optimizing plankton image classification with metadata-enhanced representation learning

Automated camera-based sensors are widely used in vessel-based research to monitor plankton and marine particles. However, current methods suffer from the costly and time-consuming requirement of annotating data for fully supervised learning, especially in plankton grouping tasks characterized by long-tailed datasets. In response, we propose a novel self-supervised learning framework that significantly reduces reliance on expensive human annotations by leveraging crucial metadata such as water depth and location. The method comprises three major steps: self-supervised training, innovative sampling, and final classification. It identifies key sample subsets from an unlabeled dataset using a hierarchical clustering approach and incorporates an innovative balancing representative subsampling strategy that addresses the challenge of dataset imbalance and enhances generalizability across diverse plankton classes. Our approach prioritizes discerning representation features observed in images that exhibit correlations with the patterns found in their associated metadata. Furthermore, our method introduces a novel grouping based on the visual perspective selection method, enabling the identification of balanced subset views that depart from traditional class-based categorization. Our experimental results showcase a significant enhancement in image classification accuracy, with a 23% improvement over methods that do not utilize metadata, and attains a macro F1-score of 54% for ten populated species from a severely long-tailed dataset. This is achieved with a mere 0.3% of the entire dataset used for annotation.
1939-1404
17117-17133
Masoudi, Mojtaba
713121f9-973d-4146-ab2a-ca773347fe35
Giering, Sarah L.C.
fa349d1b-7c28-482b-b379-824e2688bbb4
Eftekhari, Noushin
748e8125-6d33-42d9-95fe-9654a63d4839
Massot‐Campos, Miquel
6d2b0c16-899c-4f69-8c8d-9434188a30b8
Irisson, Jean Olivier
2cc0745a-4c7f-416c-ace0-9ec57a872296
Thornton, Blair
8293beb5-c083-47e3-b5f0-d9c3cee14be9
Masoudi, Mojtaba
713121f9-973d-4146-ab2a-ca773347fe35
Giering, Sarah L.C.
fa349d1b-7c28-482b-b379-824e2688bbb4
Eftekhari, Noushin
748e8125-6d33-42d9-95fe-9654a63d4839
Massot‐Campos, Miquel
6d2b0c16-899c-4f69-8c8d-9434188a30b8
Irisson, Jean Olivier
2cc0745a-4c7f-416c-ace0-9ec57a872296
Thornton, Blair
8293beb5-c083-47e3-b5f0-d9c3cee14be9

Masoudi, Mojtaba, Giering, Sarah L.C., Eftekhari, Noushin, Massot‐Campos, Miquel, Irisson, Jean Olivier and Thornton, Blair (2024) Optimizing plankton image classification with metadata-enhanced representation learning. IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing, 17, 17117-17133. (doi:10.1109/JSTARS.2024.3424498).

Record type: Article

Abstract


Automated camera-based sensors are widely used in vessel-based research to monitor plankton and marine particles. However, current methods suffer from the costly and time-consuming requirement of annotating data for fully supervised learning, especially in plankton grouping tasks characterized by long-tailed datasets. In response, we propose a novel self-supervised learning framework that significantly reduces reliance on expensive human annotations by leveraging crucial metadata such as water depth and location. The method comprises three major steps: self-supervised training, innovative sampling, and final classification. It identifies key sample subsets from an unlabeled dataset using a hierarchical clustering approach and incorporates an innovative balancing representative subsampling strategy that addresses the challenge of dataset imbalance and enhances generalizability across diverse plankton classes. Our approach prioritizes discerning representation features observed in images that exhibit correlations with the patterns found in their associated metadata. Furthermore, our method introduces a novel grouping based on the visual perspective selection method, enabling the identification of balanced subset views that depart from traditional class-based categorization. Our experimental results showcase a significant enhancement in image classification accuracy, with a 23% improvement over methods that do not utilize metadata, and attains a macro F1-score of 54% for ten populated species from a severely long-tailed dataset. This is achieved with a mere 0.3% of the entire dataset used for annotation.

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More information

Accepted/In Press date: 2 July 2024
e-pub ahead of print date: 11 July 2024
Published date: 11 July 2024

Identifiers

Local EPrints ID: 509106
URI: http://eprints.soton.ac.uk/id/eprint/509106
ISSN: 1939-1404
PURE UUID: 501c82d9-2c67-40ca-963c-c12c60bb1e27

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Date deposited: 11 Feb 2026 17:45
Last modified: 12 Feb 2026 05:01

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Contributors

Author: Mojtaba Masoudi
Author: Sarah L.C. Giering
Author: Noushin Eftekhari
Author: Miquel Massot‐Campos
Author: Jean Olivier Irisson
Author: Blair Thornton

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