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Omics biomarkers and an approach for their practical implementation to delineate health status for personalized nutrition strategies

Omics biomarkers and an approach for their practical implementation to delineate health status for personalized nutrition strategies
Omics biomarkers and an approach for their practical implementation to delineate health status for personalized nutrition strategies
Personalized nutrition (PN) has gained much attention as a tool for empowerment of consumers to promote changes in dietary behavior, optimizing health status and preventing diet related diseases. Generalized implementation of PN faces different obstacles, one of the most relevant being metabolic characterization of the individual. Although omics technologies allow for assessment the dynamics of metabolism with unprecedented detail, its translatability as affordable and simple PN protocols is still difficult due to the complexity of metabolic regulation and to different technical and economical constrains. In this work, we propose a conceptual framework that considers the dysregulation of a few overarching processes, namely Carbohydrate metabolism, lipid metabolism, inflammation, oxidative stress and microbiota-derived metabolites, as the basis of the onset of several non-communicable diseases. These processes can be assessed and characterized by specific sets of proteomic, metabolomic and genetic markers that minimize operational constrains and maximize the information obtained at the individual level. Current machine learning and data analysis methodologies allow the development of algorithms to integrate omics and genetic markers. Reduction of dimensionality of variables facilitates the implementation of omics and genetic information in digital tools. This framework is exemplified by presenting the EU-Funded project PREVENTOMICS as a use case.
biomarkers, diet, health, omics, personalized nutrition
1040-8398
Keijer, Jaap
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Escote, Xavier
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Galmes, Sebastià
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Palou-March, Andreu
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Serra, Francisca
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Adnan Aldubayan, Mona
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Pigsborg, Kristina
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Magkos, Faidon
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Baker, Ella J.
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Calder, Philip C.
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Góralska, Joanna
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Razny, Urszula
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Malczewska-Malec, Malgorzata
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Suñol, David
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Galofré, Mar
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Rodríguez, Miguel A
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Canela, Núria
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Malcic, Radu G.
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Bosch, Montserrat
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Favari, Claudia
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Mena, Pedro
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Del Rio, Daniele
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Caimari, Antoni
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Gutierrez, Biotza
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del Bas, Josep M.
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PREVENTONOMICS Consortium
Keijer, Jaap
6a96a6de-537e-448a-b3af-1cec3135693e
Escote, Xavier
71c7eca6-acbc-40e3-bd2f-81b35e287dc0
Galmes, Sebastià
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Palou-March, Andreu
36b9e451-19de-402a-8181-106ccf122b91
Serra, Francisca
979ca07e-855a-4da9-8071-13104dcf3939
Adnan Aldubayan, Mona
3b07140d-d3c7-462c-972e-0a10ab577b95
Pigsborg, Kristina
ee03b8b8-7575-48a4-9546-4f4b8fc361a0
Magkos, Faidon
b8937389-4a24-41d1-aac4-c6fff4e937ae
Baker, Ella J.
7cd5b762-d7d7-4584-b9a7-dba555085440
Calder, Philip C.
1797e54f-378e-4dcb-80a4-3e30018f07a6
Góralska, Joanna
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Razny, Urszula
5e552f7c-6332-4b9b-b4cc-b27a75c7d889
Malczewska-Malec, Malgorzata
f45f91dc-fbd2-4a77-a110-b2666792ad25
Suñol, David
5d1d7067-9c8e-4206-90e9-51c4a86cc8b6
Galofré, Mar
58773ce2-58f1-4ab8-b36d-2f275fd34d55
Rodríguez, Miguel A
352b9d83-fbd6-4de4-b716-c6de2970a572
Canela, Núria
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Malcic, Radu G.
cc4ccee4-9805-4e80-a623-0df919cc8930
Bosch, Montserrat
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Favari, Claudia
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Mena, Pedro
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Del Rio, Daniele
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Caimari, Antoni
ceba1de1-db82-4084-b238-c12c5037e89c
Gutierrez, Biotza
10fabf39-2211-41f9-9ac4-741ca4578676
del Bas, Josep M.
4d4b5546-78d7-4692-b09a-9f48e68b5fc1

Keijer, Jaap, Escote, Xavier, Galmes, Sebastià, Palou-March, Andreu, Serra, Francisca, Adnan Aldubayan, Mona, Pigsborg, Kristina, Magkos, Faidon, Baker, Ella J., Calder, Philip C., Góralska, Joanna, Razny, Urszula, Malczewska-Malec, Malgorzata, Suñol, David, Galofré, Mar, Rodríguez, Miguel A, Canela, Núria, Malcic, Radu G., Bosch, Montserrat, Favari, Claudia, Mena, Pedro, Del Rio, Daniele, Caimari, Antoni, Gutierrez, Biotza and del Bas, Josep M. , PREVENTONOMICS Consortium (2023) Omics biomarkers and an approach for their practical implementation to delineate health status for personalized nutrition strategies. Critical Reviews in Food Science and Nutrition. (doi:10.1080/10408398.2023.2198605).

Record type: Review

Abstract

Personalized nutrition (PN) has gained much attention as a tool for empowerment of consumers to promote changes in dietary behavior, optimizing health status and preventing diet related diseases. Generalized implementation of PN faces different obstacles, one of the most relevant being metabolic characterization of the individual. Although omics technologies allow for assessment the dynamics of metabolism with unprecedented detail, its translatability as affordable and simple PN protocols is still difficult due to the complexity of metabolic regulation and to different technical and economical constrains. In this work, we propose a conceptual framework that considers the dysregulation of a few overarching processes, namely Carbohydrate metabolism, lipid metabolism, inflammation, oxidative stress and microbiota-derived metabolites, as the basis of the onset of several non-communicable diseases. These processes can be assessed and characterized by specific sets of proteomic, metabolomic and genetic markers that minimize operational constrains and maximize the information obtained at the individual level. Current machine learning and data analysis methodologies allow the development of algorithms to integrate omics and genetic markers. Reduction of dimensionality of variables facilitates the implementation of omics and genetic information in digital tools. This framework is exemplified by presenting the EU-Funded project PREVENTOMICS as a use case.

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More information

e-pub ahead of print date: 19 April 2023
Keywords: biomarkers, diet, health, omics, personalized nutrition

Identifiers

Local EPrints ID: 477012
URI: http://eprints.soton.ac.uk/id/eprint/477012
ISSN: 1040-8398
PURE UUID: 86069750-07f7-49f5-a327-8ab4641d463c
ORCID for Ella J. Baker: ORCID iD orcid.org/0000-0003-1008-5506
ORCID for Philip C. Calder: ORCID iD orcid.org/0000-0002-6038-710X

Catalogue record

Date deposited: 23 May 2023 16:47
Last modified: 17 Mar 2024 03:55

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Contributors

Author: Jaap Keijer
Author: Xavier Escote
Author: Sebastià Galmes
Author: Andreu Palou-March
Author: Francisca Serra
Author: Mona Adnan Aldubayan
Author: Kristina Pigsborg
Author: Faidon Magkos
Author: Ella J. Baker ORCID iD
Author: Joanna Góralska
Author: Urszula Razny
Author: Malgorzata Malczewska-Malec
Author: David Suñol
Author: Mar Galofré
Author: Miguel A Rodríguez
Author: Núria Canela
Author: Radu G. Malcic
Author: Montserrat Bosch
Author: Claudia Favari
Author: Pedro Mena
Author: Daniele Del Rio
Author: Antoni Caimari
Author: Biotza Gutierrez
Author: Josep M. del Bas
Corporate Author: PREVENTONOMICS Consortium

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